Search results for the GEO ID: GSE30195  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM747424 | GPL570 |
|
no U2AF1 mutation 3 rep
|
CD34+ purified MDS bone marrow
|
upn: 127804
genotype: no U2AF1 mutation
disease state: Myelodysplastic syndrome
cell type: CD34+ purified MDS bone marrow
age on study: 64
race: White
banking date: 8/3/2005
diagnosis date: 2005-08-03
duration of disease (month): 0
Sex: male
fab: RA
bone marrow myeloblast(%): 2
wbc (x10^3/mcl): 2.3
platelet (x10^3/mcl): 195
hemoglobin (g/dl): 8.9
anc (x10^3/mcl): 1.4
iPSs: 0.5
cytogenetic risk group: Good
cytogenetics: 46, XY[20]
|
|
| Sample_geo_accession | GSM747424
| | Sample_status | Public on Nov 23 2011
| | Sample_submission_date | Jun 24 2011
| | Sample_last_update_date | Nov 23 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | CD34+ cells were purified using the autoMACS system (Miltenyi)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA isolated using TRI Reagent (Sigma, St. Louis, MO) was purified with an RNeasy mini kit (Qiagen, Valencia, CA).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Chips labeled with biotin according to Manufacturer's protocol
| | Sample_hyb_protocol | Chips hybridized according to Manufacturer's protocol
| | Sample_scan_protocol | standard Affymetrix protocol using GS3000
| | Sample_data_processing | Data corrected to 1500 Baseline
| | Sample_platform_id | GPL570
| | Sample_contact_name | Rekha,,Meyer
| | Sample_contact_email | rmeyer@pathbox.wustl.edu
| | Sample_contact_phone | 314 362 8853
| | Sample_contact_institute | Washington University School of Medicine
| | Sample_contact_address | 4320 Forest Park Av
| | Sample_contact_city | St Louis
| | Sample_contact_state | MO
| | Sample_contact_zip/postal_code | 63128
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM747nnn/GSM747424/suppl/GSM747424_13681.CEL.gz
| | Sample_series_id | GSE30195
| | Sample_data_row_count | 54675
| | |
|
GSM747425 | GPL570 |
|
U2AF1 mutation 1 rep
|
CD34+ purified MDS bone marrow
|
upn: 300813
genotype: U2AF1 mutation
disease state: Myelodysplastic syndrome
cell type: CD34+ purified MDS bone marrow
age on study: 41
race: White
banking date: 7/12/2005
diagnosis date: 2005-04-26
duration of disease (month): 3
Sex: female
fab: RA
bone marrow myeloblast(%): 2
wbc (x10^3/mcl): 2.7
platelet (x10^3/mcl): 243
hemoglobin (g/dl): 12.2
anc (x10^3/mcl): 1.2
iPSs: 0
cytogenetic risk group: Good
cytogenetics: 46, XX[20]
|
|
| Sample_geo_accession | GSM747425
| | Sample_status | Public on Nov 23 2011
| | Sample_submission_date | Jun 24 2011
| | Sample_last_update_date | Nov 23 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | CD34+ cells were purified using the autoMACS system (Miltenyi)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA isolated using TRI Reagent (Sigma, St. Louis, MO) was purified with an RNeasy mini kit (Qiagen, Valencia, CA).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Chips labeled with biotin according to Manufacturer's protocol
| | Sample_hyb_protocol | Chips hybridized according to Manufacturer's protocol
| | Sample_scan_protocol | standard Affymetrix protocol using GS3000
| | Sample_data_processing | Data corrected to 1500 Baseline
| | Sample_platform_id | GPL570
| | Sample_contact_name | Rekha,,Meyer
| | Sample_contact_email | rmeyer@pathbox.wustl.edu
| | Sample_contact_phone | 314 362 8853
| | Sample_contact_institute | Washington University School of Medicine
| | Sample_contact_address | 4320 Forest Park Av
| | Sample_contact_city | St Louis
| | Sample_contact_state | MO
| | Sample_contact_zip/postal_code | 63128
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM747nnn/GSM747425/suppl/GSM747425_13664.CEL.gz
| | Sample_series_id | GSE30195
| | Sample_data_row_count | 54675
| | |
|
GSM747426 | GPL570 |
|
U2AF1 mutation 17 rep
|
CD34+ purified MDS bone marrow
|
upn: 321864
genotype: U2AF1 mutation
disease state: Myelodysplastic syndrome
cell type: CD34+ purified MDS bone marrow
age on study: 63
race: White
banking date: 10/3/2005
diagnosis date: 2005-10-03
duration of disease (month): 0
Sex: female
fab: RAEB
bone marrow myeloblast(%): 12
wbc (x10^3/mcl): 1.9
platelet (x10^3/mcl): 56
hemoglobin (g/dl): 9.8
anc (x10^3/mcl): 0.3
iPSs: 2.5
cytogenetic risk group: Intermediate
cytogenetics: 47,XX,+8[20]
|
|
| Sample_geo_accession | GSM747426
| | Sample_status | Public on Nov 23 2011
| | Sample_submission_date | Jun 24 2011
| | Sample_last_update_date | Nov 23 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | CD34+ cells were purified using the autoMACS system (Miltenyi)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA isolated using TRI Reagent (Sigma, St. Louis, MO) was purified with an RNeasy mini kit (Qiagen, Valencia, CA).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Chips labeled with biotin according to Manufacturer's protocol
| | Sample_hyb_protocol | Chips hybridized according to Manufacturer's protocol
| | Sample_scan_protocol | standard Affymetrix protocol using GS3000
| | Sample_data_processing | Data corrected to 1500 Baseline
| | Sample_platform_id | GPL570
| | Sample_contact_name | Rekha,,Meyer
| | Sample_contact_email | rmeyer@pathbox.wustl.edu
| | Sample_contact_phone | 314 362 8853
| | Sample_contact_institute | Washington University School of Medicine
| | Sample_contact_address | 4320 Forest Park Av
| | Sample_contact_city | St Louis
| | Sample_contact_state | MO
| | Sample_contact_zip/postal_code | 63128
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM747nnn/GSM747426/suppl/GSM747426_13667.CEL.gz
| | Sample_series_id | GSE30195
| | Sample_data_row_count | 54675
| | |
|
GSM747427 | GPL570 |
|
no U2AF1 mutation 12 rep
|
CD34+ purified MDS bone marrow
|
upn: 350460
genotype: no U2AF1 mutation
disease state: Myelodysplastic syndrome
cell type: CD34+ purified MDS bone marrow
age on study: 30
race: Black
banking date: 11/17/2006
diagnosis date: 2006-11-17
duration of disease (month): 0
Sex: male
fab: RA
bone marrow myeloblast(%): 4
wbc (x10^3/mcl): 2.1
platelet (x10^3/mcl): 37
hemoglobin (g/dl): 7.5
anc (x10^3/mcl): 1.6
iPSs: 0.5
cytogenetic risk group: Good
cytogenetics: 46, XY[20]
|
|
| Sample_geo_accession | GSM747427
| | Sample_status | Public on Nov 23 2011
| | Sample_submission_date | Jun 24 2011
| | Sample_last_update_date | Nov 23 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | CD34+ cells were purified using the autoMACS system (Miltenyi)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA isolated using TRI Reagent (Sigma, St. Louis, MO) was purified with an RNeasy mini kit (Qiagen, Valencia, CA).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Chips labeled with biotin according to Manufacturer's protocol
| | Sample_hyb_protocol | Chips hybridized according to Manufacturer's protocol
| | Sample_scan_protocol | standard Affymetrix protocol using GS3000
| | Sample_data_processing | Data corrected to 1500 Baseline
| | Sample_platform_id | GPL570
| | Sample_contact_name | Rekha,,Meyer
| | Sample_contact_email | rmeyer@pathbox.wustl.edu
| | Sample_contact_phone | 314 362 8853
| | Sample_contact_institute | Washington University School of Medicine
| | Sample_contact_address | 4320 Forest Park Av
| | Sample_contact_city | St Louis
| | Sample_contact_state | MO
| | Sample_contact_zip/postal_code | 63128
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM747nnn/GSM747427/suppl/GSM747427_13675.CEL.gz
| | Sample_series_id | GSE30195
| | Sample_data_row_count | 54675
| | |
|
GSM747428 | GPL570 |
|
no U2AF1 mutation 10 rep
|
CD34+ purified MDS bone marrow
|
upn: 372440
genotype: no U2AF1 mutation
disease state: Myelodysplastic syndrome
cell type: CD34+ purified MDS bone marrow
age on study: 59
race: White
banking date: 5/5/2006
diagnosis date: 5/5/2006
duration of disease (month): 0
Sex: male
fab: RA
bone marrow myeloblast(%): 2
wbc (x10^3/mcl): 2.9
platelet (x10^3/mcl): 123
hemoglobin (g/dl): 13.8
anc (x10^3/mcl): 1.4
iPSs: 0
cytogenetic risk group: Good
cytogenetics: 46,XY[20]
|
|
| Sample_geo_accession | GSM747428
| | Sample_status | Public on Nov 23 2011
| | Sample_submission_date | Jun 24 2011
| | Sample_last_update_date | Nov 23 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | CD34+ cells were purified using the autoMACS system (Miltenyi)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA isolated using TRI Reagent (Sigma, St. Louis, MO) was purified with an RNeasy mini kit (Qiagen, Valencia, CA).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Chips labeled with biotin according to Manufacturer's protocol
| | Sample_hyb_protocol | Chips hybridized according to Manufacturer's protocol
| | Sample_scan_protocol | standard Affymetrix protocol using GS3000
| | Sample_data_processing | Data corrected to 1500 Baseline
| | Sample_platform_id | GPL570
| | Sample_contact_name | Rekha,,Meyer
| | Sample_contact_email | rmeyer@pathbox.wustl.edu
| | Sample_contact_phone | 314 362 8853
| | Sample_contact_institute | Washington University School of Medicine
| | Sample_contact_address | 4320 Forest Park Av
| | Sample_contact_city | St Louis
| | Sample_contact_state | MO
| | Sample_contact_zip/postal_code | 63128
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM747nnn/GSM747428/suppl/GSM747428_13670.CEL.gz
| | Sample_series_id | GSE30195
| | Sample_data_row_count | 54675
| | |
|
GSM747429 | GPL570 |
|
no U2AF1 mutation 9 rep
|
CD34+ purified MDS bone marrow
|
upn: 421452
genotype: no U2AF1 mutation
disease state: Myelodysplastic syndrome
cell type: CD34+ purified MDS bone marrow
age on study: 33
race: White
banking date: 11/4/2005
diagnosis date: 2005-09-30
duration of disease (month): 2
Sex: female
fab: RAEB
bone marrow myeloblast(%): 10
wbc (x10^3/mcl): 3.3
platelet (x10^3/mcl): 22
hemoglobin (g/dl): 8.3
anc (x10^3/mcl): 0.9
iPSs: 1
cytogenetic risk group: Good
cytogenetics: 46,XX[20]
|
|
| Sample_geo_accession | GSM747429
| | Sample_status | Public on Nov 23 2011
| | Sample_submission_date | Jun 24 2011
| | Sample_last_update_date | Nov 23 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | CD34+ cells were purified using the autoMACS system (Miltenyi)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA isolated using TRI Reagent (Sigma, St. Louis, MO) was purified with an RNeasy mini kit (Qiagen, Valencia, CA).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Chips labeled with biotin according to Manufacturer's protocol
| | Sample_hyb_protocol | Chips hybridized according to Manufacturer's protocol
| | Sample_scan_protocol | standard Affymetrix protocol using GS3000
| | Sample_data_processing | Data corrected to 1500 Baseline
| | Sample_platform_id | GPL570
| | Sample_contact_name | Rekha,,Meyer
| | Sample_contact_email | rmeyer@pathbox.wustl.edu
| | Sample_contact_phone | 314 362 8853
| | Sample_contact_institute | Washington University School of Medicine
| | Sample_contact_address | 4320 Forest Park Av
| | Sample_contact_city | St Louis
| | Sample_contact_state | MO
| | Sample_contact_zip/postal_code | 63128
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM747nnn/GSM747429/suppl/GSM747429_13668.CEL.gz
| | Sample_series_id | GSE30195
| | Sample_data_row_count | 54675
| | |
|
GSM747430 | GPL570 |
|
no U2AF1 mutation 5 rep
|
CD34+ purified MDS bone marrow
|
upn: 431137
genotype: no U2AF1 mutation
disease state: Myelodysplastic syndrome
cell type: CD34+ purified MDS bone marrow
age on study: 54
race: White
banking date: 8/29/2006
diagnosis date: 2006-07-05
duration of disease (month): 1
Sex: male
fab: RAEB
bone marrow myeloblast(%): 7
wbc (x10^3/mcl): 6.5
platelet (x10^3/mcl): 8
hemoglobin (g/dl): 8.2
anc (x10^3/mcl): 4.6
iPSs: 2
cytogenetic risk group: Poor
cytogenetics: 46,XY,add(3)(q25),del(3)(p13),del(5)(q15q31),-6,+8,add(12)(p11.2),add(15)(p11.1), -18,+22[cp4]/44,sl,-8,-20,-22,+mar[cp5]/44,sl1,-del(3),-7,+2mar[cp5]/43,sl1,add(X)(q28),-add(12p),+12,-mar[cp6]
|
|
| Sample_geo_accession | GSM747430
| | Sample_status | Public on Nov 23 2011
| | Sample_submission_date | Jun 24 2011
| | Sample_last_update_date | Nov 23 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | CD34+ cells were purified using the autoMACS system (Miltenyi)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA isolated using TRI Reagent (Sigma, St. Louis, MO) was purified with an RNeasy mini kit (Qiagen, Valencia, CA).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Chips labeled with biotin according to Manufacturer's protocol
| | Sample_hyb_protocol | Chips hybridized according to Manufacturer's protocol
| | Sample_scan_protocol | standard Affymetrix protocol using GS3000
| | Sample_data_processing | Data corrected to 1500 Baseline
| | Sample_platform_id | GPL570
| | Sample_contact_name | Rekha,,Meyer
| | Sample_contact_email | rmeyer@pathbox.wustl.edu
| | Sample_contact_phone | 314 362 8853
| | Sample_contact_institute | Washington University School of Medicine
| | Sample_contact_address | 4320 Forest Park Av
| | Sample_contact_city | St Louis
| | Sample_contact_state | MO
| | Sample_contact_zip/postal_code | 63128
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM747nnn/GSM747430/suppl/GSM747430_13674.CEL.gz
| | Sample_series_id | GSE30195
| | Sample_data_row_count | 54675
| | |
|
GSM747431 | GPL570 |
|
no U2AF1 mutation 14 rep
|
CD34+ purified MDS bone marrow
|
upn: 497942
genotype: no U2AF1 mutation
disease state: Myelodysplastic syndrome
cell type: CD34+ purified MDS bone marrow
age on study: 47
race: White
banking date: 1/18/2006
diagnosis date: 2006-01-18
duration of disease (month): 0
Sex: male
fab: RA
bone marrow myeloblast(%): 0
wbc (x10^3/mcl): 4.1
platelet (x10^3/mcl): 24
hemoglobin (g/dl): 8.6
anc (x10^3/mcl): 1.6
iPSs: 1
cytogenetic risk group: Intermediate
cytogenetics: 46,XY,der(1;22)(q10;q10)[4]/46,XY[16]
|
|
| Sample_geo_accession | GSM747431
| | Sample_status | Public on Nov 23 2011
| | Sample_submission_date | Jun 24 2011
| | Sample_last_update_date | Nov 23 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | CD34+ cells were purified using the autoMACS system (Miltenyi)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA isolated using TRI Reagent (Sigma, St. Louis, MO) was purified with an RNeasy mini kit (Qiagen, Valencia, CA).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Chips labeled with biotin according to Manufacturer's protocol
| | Sample_hyb_protocol | Chips hybridized according to Manufacturer's protocol
| | Sample_scan_protocol | standard Affymetrix protocol using GS3000
| | Sample_data_processing | Data corrected to 1500 Baseline
| | Sample_platform_id | GPL570
| | Sample_contact_name | Rekha,,Meyer
| | Sample_contact_email | rmeyer@pathbox.wustl.edu
| | Sample_contact_phone | 314 362 8853
| | Sample_contact_institute | Washington University School of Medicine
| | Sample_contact_address | 4320 Forest Park Av
| | Sample_contact_city | St Louis
| | Sample_contact_state | MO
| | Sample_contact_zip/postal_code | 63128
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM747nnn/GSM747431/suppl/GSM747431_13682.CEL.gz
| | Sample_series_id | GSE30195
| | Sample_data_row_count | 54675
| | |
|
GSM747432 | GPL570 |
|
no U2AF1 mutation 11 rep
|
CD34+ purified MDS bone marrow
|
upn: 667720
genotype: no U2AF1 mutation
disease state: Myelodysplastic syndrome
cell type: CD34+ purified MDS bone marrow
age on study: 65
race: White
banking date: 5/9/2006
diagnosis date: 2006-05-01
duration of disease (month): 0
Sex: female
fab: RAEB
bone marrow myeloblast(%): 10
wbc (x10^3/mcl): 5.1
platelet (x10^3/mcl): 61
hemoglobin (g/dl): 8.8
anc (x10^3/mcl): 2.3
iPSs: 1
cytogenetic risk group: Good
cytogenetics: 46,XX[20]
|
|
| Sample_geo_accession | GSM747432
| | Sample_status | Public on Nov 23 2011
| | Sample_submission_date | Jun 24 2011
| | Sample_last_update_date | Nov 23 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | CD34+ cells were purified using the autoMACS system (Miltenyi)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA isolated using TRI Reagent (Sigma, St. Louis, MO) was purified with an RNeasy mini kit (Qiagen, Valencia, CA).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Chips labeled with biotin according to Manufacturer's protocol
| | Sample_hyb_protocol | Chips hybridized according to Manufacturer's protocol
| | Sample_scan_protocol | standard Affymetrix protocol using GS3000
| | Sample_data_processing | Data corrected to 1500 Baseline
| | Sample_platform_id | GPL570
| | Sample_contact_name | Rekha,,Meyer
| | Sample_contact_email | rmeyer@pathbox.wustl.edu
| | Sample_contact_phone | 314 362 8853
| | Sample_contact_institute | Washington University School of Medicine
| | Sample_contact_address | 4320 Forest Park Av
| | Sample_contact_city | St Louis
| | Sample_contact_state | MO
| | Sample_contact_zip/postal_code | 63128
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM747nnn/GSM747432/suppl/GSM747432_13671.CEL.gz
| | Sample_series_id | GSE30195
| | Sample_data_row_count | 54675
| | |
|
GSM747433 | GPL570 |
|
no U2AF1 mutation 8 rep
|
CD34+ purified MDS bone marrow
|
upn: 703653
genotype: no U2AF1 mutation
disease state: Myelodysplastic syndrome
cell type: CD34+ purified MDS bone marrow
age on study: 20
race: White
banking date: 2/2/2005
diagnosis date: 2005-02-02
duration of disease (month): 0
Sex: female
fab: RA
bone marrow myeloblast(%): 0
wbc (x10^3/mcl): 3
platelet (x10^3/mcl): 27
hemoglobin (g/dl): 8.4
anc (x10^3/mcl): 0.6
iPSs: 0.5
cytogenetic risk group: Good
cytogenetics: 46,XX[20]
|
|
| Sample_geo_accession | GSM747433
| | Sample_status | Public on Nov 23 2011
| | Sample_submission_date | Jun 24 2011
| | Sample_last_update_date | Nov 23 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | CD34+ cells were purified using the autoMACS system (Miltenyi)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA isolated using TRI Reagent (Sigma, St. Louis, MO) was purified with an RNeasy mini kit (Qiagen, Valencia, CA).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Chips labeled with biotin according to Manufacturer's protocol
| | Sample_hyb_protocol | Chips hybridized according to Manufacturer's protocol
| | Sample_scan_protocol | standard Affymetrix protocol using GS3000
| | Sample_data_processing | Data corrected to 1500 Baseline
| | Sample_platform_id | GPL570
| | Sample_contact_name | Rekha,,Meyer
| | Sample_contact_email | rmeyer@pathbox.wustl.edu
| | Sample_contact_phone | 314 362 8853
| | Sample_contact_institute | Washington University School of Medicine
| | Sample_contact_address | 4320 Forest Park Av
| | Sample_contact_city | St Louis
| | Sample_contact_state | MO
| | Sample_contact_zip/postal_code | 63128
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM747nnn/GSM747433/suppl/GSM747433_13663.CEL.gz
| | Sample_series_id | GSE30195
| | Sample_data_row_count | 54675
| | |
|
GSM747434 | GPL570 |
|
no U2AF1 mutation 20 rep
|
CD34+ purified MDS bone marrow
|
upn: 705782
genotype: no U2AF1 mutation
disease state: Myelodysplastic syndrome
cell type: CD34+ purified MDS bone marrow
age on study: 34
race: White
banking date: 8/4/2006
diagnosis date: 2006-08-04
duration of disease (month): 0
Sex: male
fab: RAEB
bone marrow myeloblast(%): 5
wbc (x10^3/mcl): 3.3
platelet (x10^3/mcl): 28
hemoglobin (g/dl): 9.7
anc (x10^3/mcl): 1.7
iPSs: 1
cytogenetic risk group: Good
cytogenetics: 46,XY[20]
|
|
| Sample_geo_accession | GSM747434
| | Sample_status | Public on Nov 23 2011
| | Sample_submission_date | Jun 24 2011
| | Sample_last_update_date | Nov 23 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | CD34+ cells were purified using the autoMACS system (Miltenyi)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA isolated using TRI Reagent (Sigma, St. Louis, MO) was purified with an RNeasy mini kit (Qiagen, Valencia, CA).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Chips labeled with biotin according to Manufacturer's protocol
| | Sample_hyb_protocol | Chips hybridized according to Manufacturer's protocol
| | Sample_scan_protocol | standard Affymetrix protocol using GS3000
| | Sample_data_processing | Data corrected to 1500 Baseline
| | Sample_platform_id | GPL570
| | Sample_contact_name | Rekha,,Meyer
| | Sample_contact_email | rmeyer@pathbox.wustl.edu
| | Sample_contact_phone | 314 362 8853
| | Sample_contact_institute | Washington University School of Medicine
| | Sample_contact_address | 4320 Forest Park Av
| | Sample_contact_city | St Louis
| | Sample_contact_state | MO
| | Sample_contact_zip/postal_code | 63128
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM747nnn/GSM747434/suppl/GSM747434_13673.CEL.gz
| | Sample_series_id | GSE30195
| | Sample_data_row_count | 54675
| | |
|
GSM747435 | GPL570 |
|
U2AF1 mutation 3 rep
|
CD34+ purified MDS bone marrow
|
upn: 843623
genotype: U2AF1 mutation
disease state: Myelodysplastic syndrome
cell type: CD34+ purified MDS bone marrow
age on study: 59
race: White
banking date: 3/3/2003
diagnosis date: 2003-03-03
duration of disease (month): 0
Sex: male
fab: RAEB
bone marrow myeloblast(%): 6
wbc (x10^3/mcl): 0.7
platelet (x10^3/mcl): 64
hemoglobin (g/dl): 9.7
anc (x10^3/mcl): 0.4
iPSs: 1
cytogenetic risk group: Good
cytogenetics: 46,XY,del(20)(q11.2q13.3)[2]/46,XY[18]
|
|
| Sample_geo_accession | GSM747435
| | Sample_status | Public on Nov 23 2011
| | Sample_submission_date | Jun 24 2011
| | Sample_last_update_date | Nov 23 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | CD34+ cells were purified using the autoMACS system (Miltenyi)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA isolated using TRI Reagent (Sigma, St. Louis, MO) was purified with an RNeasy mini kit (Qiagen, Valencia, CA).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Chips labeled with biotin according to Manufacturer's protocol
| | Sample_hyb_protocol | Chips hybridized according to Manufacturer's protocol
| | Sample_scan_protocol | standard Affymetrix protocol using GS3000
| | Sample_data_processing | Data corrected to 1500 Baseline
| | Sample_platform_id | GPL570
| | Sample_contact_name | Rekha,,Meyer
| | Sample_contact_email | rmeyer@pathbox.wustl.edu
| | Sample_contact_phone | 314 362 8853
| | Sample_contact_institute | Washington University School of Medicine
| | Sample_contact_address | 4320 Forest Park Av
| | Sample_contact_city | St Louis
| | Sample_contact_state | MO
| | Sample_contact_zip/postal_code | 63128
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM747nnn/GSM747435/suppl/GSM747435_13662.CEL.gz
| | Sample_series_id | GSE30195
| | Sample_data_row_count | 54675
| | |
|
GSM747436 | GPL570 |
|
U2AF1 mutation 18 rep
|
CD34+ purified MDS bone marrow
|
upn: 917011
genotype: U2AF1 mutation
disease state: Myelodysplastic syndrome
cell type: CD34+ purified MDS bone marrow
age on study: 80
race: White
banking date: 6/2/2006
diagnosis date: 2006-06-02
duration of disease (month): 0
Sex: male
fab: RA
bone marrow myeloblast(%): 0
wbc (x10^3/mcl): 3.3
platelet (x10^3/mcl): 107
hemoglobin (g/dl): 8.2
anc (x10^3/mcl): 0.5
iPSs: 0.5
cytogenetic risk group: Good
cytogenetics: 46,XY,del(20)(q11.2)[12]/46,XY[8]
|
|
| Sample_geo_accession | GSM747436
| | Sample_status | Public on Nov 23 2011
| | Sample_submission_date | Jun 24 2011
| | Sample_last_update_date | Nov 23 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | CD34+ cells were purified using the autoMACS system (Miltenyi)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA isolated using TRI Reagent (Sigma, St. Louis, MO) was purified with an RNeasy mini kit (Qiagen, Valencia, CA).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Chips labeled with biotin according to Manufacturer's protocol
| | Sample_hyb_protocol | Chips hybridized according to Manufacturer's protocol
| | Sample_scan_protocol | standard Affymetrix protocol using GS3000
| | Sample_data_processing | Data corrected to 1500 Baseline
| | Sample_platform_id | GPL570
| | Sample_contact_name | Rekha,,Meyer
| | Sample_contact_email | rmeyer@pathbox.wustl.edu
| | Sample_contact_phone | 314 362 8853
| | Sample_contact_institute | Washington University School of Medicine
| | Sample_contact_address | 4320 Forest Park Av
| | Sample_contact_city | St Louis
| | Sample_contact_state | MO
| | Sample_contact_zip/postal_code | 63128
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM747nnn/GSM747436/suppl/GSM747436_13672.CEL.gz
| | Sample_series_id | GSE30195
| | Sample_data_row_count | 54675
| | |
|
GSM747437 | GPL570 |
|
U2AF1 mutation 15 rep
|
CD34+ purified MDS bone marrow
|
upn: 937954
genotype: U2AF1 mutation
disease state: Myelodysplastic syndrome
cell type: CD34+ purified MDS bone marrow
age on study: 50
race: White
banking date: 9/20/2005
diagnosis date: 2005-09-12
duration of disease (month): 0
Sex: male
fab: RAEB
bone marrow myeloblast(%): 12
wbc (x10^3/mcl): 1.2
platelet (x10^3/mcl): 35
hemoglobin (g/dl): 9.9
anc (x10^3/mcl): 0.3
iPSs: 3
cytogenetic risk group: Poor
cytogenetics: 47,XY,+8[1]/47,idem,del(16)(q12.1)[13]/48,idem,+Y,del(16)(q11.1)[5]/46,XY[1]
|
|
| Sample_geo_accession | GSM747437
| | Sample_status | Public on Nov 23 2011
| | Sample_submission_date | Jun 24 2011
| | Sample_last_update_date | Nov 23 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | CD34+ cells were purified using the autoMACS system (Miltenyi)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA isolated using TRI Reagent (Sigma, St. Louis, MO) was purified with an RNeasy mini kit (Qiagen, Valencia, CA).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Chips labeled with biotin according to Manufacturer's protocol
| | Sample_hyb_protocol | Chips hybridized according to Manufacturer's protocol
| | Sample_scan_protocol | standard Affymetrix protocol using GS3000
| | Sample_data_processing | Data corrected to 1500 Baseline
| | Sample_platform_id | GPL570
| | Sample_contact_name | Rekha,,Meyer
| | Sample_contact_email | rmeyer@pathbox.wustl.edu
| | Sample_contact_phone | 314 362 8853
| | Sample_contact_institute | Washington University School of Medicine
| | Sample_contact_address | 4320 Forest Park Av
| | Sample_contact_city | St Louis
| | Sample_contact_state | MO
| | Sample_contact_zip/postal_code | 63128
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM747nnn/GSM747437/suppl/GSM747437_13665.CEL.gz
| | Sample_series_id | GSE30195
| | Sample_data_row_count | 54675
| | |
|
GSM747438 | GPL570 |
|
U2AF1 mutation 16 rep
|
CD34+ purified MDS bone marrow
|
upn: 989739
genotype: U2AF1 mutation
disease state: Myelodysplastic syndrome
cell type: CD34+ purified MDS bone marrow
age on study: 71
race: White
banking date: 9/30/2005
diagnosis date: 2005-08-15
duration of disease (month): 1
Sex: male
fab: RAEB
bone marrow myeloblast(%): 18
wbc (x10^3/mcl): 1.2
platelet (x10^3/mcl): 52
hemoglobin (g/dl): 11
anc (x10^3/mcl): 0.2
iPSs: 3
cytogenetic risk group: Poor
cytogenetics: 46,XY,del(7)(q21)[8]/46,XY[12]
|
|
| Sample_geo_accession | GSM747438
| | Sample_status | Public on Nov 23 2011
| | Sample_submission_date | Jun 24 2011
| | Sample_last_update_date | Nov 23 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | CD34+ cells were purified using the autoMACS system (Miltenyi)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA isolated using TRI Reagent (Sigma, St. Louis, MO) was purified with an RNeasy mini kit (Qiagen, Valencia, CA).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Chips labeled with biotin according to Manufacturer's protocol
| | Sample_hyb_protocol | Chips hybridized according to Manufacturer's protocol
| | Sample_scan_protocol | standard Affymetrix protocol using GS3000
| | Sample_data_processing | Data corrected to 1500 Baseline
| | Sample_platform_id | GPL570
| | Sample_contact_name | Rekha,,Meyer
| | Sample_contact_email | rmeyer@pathbox.wustl.edu
| | Sample_contact_phone | 314 362 8853
| | Sample_contact_institute | Washington University School of Medicine
| | Sample_contact_address | 4320 Forest Park Av
| | Sample_contact_city | St Louis
| | Sample_contact_state | MO
| | Sample_contact_zip/postal_code | 63128
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM747nnn/GSM747438/suppl/GSM747438_13666.CEL.gz
| | Sample_series_id | GSE30195
| | Sample_data_row_count | 54675
| | |
|
GSM747439 | GPL570 |
|
RNA control rep3
|
CD34+ purified control bone marrow
|
genotype: control
disease state: control
cell type: CD34+ purified control bone marrow
age on study: unknown
race: unknown
banking date: unknown
diagnosis date: unknown
duration of disease (month): unknown
Sex: unknown
fab: unknown
bone marrow myeloblast(%): unknown
wbc (x10^3/mcl): unknown
platelet (x10^3/mcl): unknown
hemoglobin (g/dl): unknown
anc (x10^3/mcl): unknown
iPSs: unknown
cytogenetic risk group: unknown
cytogenetics: unknown
|
|
| Sample_geo_accession | GSM747439
| | Sample_status | Public on Nov 23 2011
| | Sample_submission_date | Jun 24 2011
| | Sample_last_update_date | Nov 23 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | CD34+ cells were purified using the autoMACS system (Miltenyi)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA isolated using TRI Reagent (Sigma, St. Louis, MO) was purified with an RNeasy mini kit (Qiagen, Valencia, CA).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Chips labeled with biotin according to Manufacturer's protocol
| | Sample_hyb_protocol | Chips hybridized according to Manufacturer's protocol
| | Sample_scan_protocol | standard Affymetrix protocol using GS3000
| | Sample_data_processing | Data corrected to 1500 Baseline
| | Sample_platform_id | GPL570
| | Sample_contact_name | Rekha,,Meyer
| | Sample_contact_email | rmeyer@pathbox.wustl.edu
| | Sample_contact_phone | 314 362 8853
| | Sample_contact_institute | Washington University School of Medicine
| | Sample_contact_address | 4320 Forest Park Av
| | Sample_contact_city | St Louis
| | Sample_contact_state | MO
| | Sample_contact_zip/postal_code | 63128
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM747nnn/GSM747439/suppl/GSM747439_13676.CEL.gz
| | Sample_series_id | GSE30195
| | Sample_data_row_count | 54675
| | |
|
GSM747440 | GPL570 |
|
RNA control rep4
|
CD34+ purified control bone marrow
|
genotype: control
disease state: control
cell type: CD34+ purified control bone marrow
age on study: unknown
race: unknown
banking date: unknown
diagnosis date: unknown
duration of disease (month): unknown
Sex: unknown
fab: unknown
bone marrow myeloblast(%): unknown
wbc (x10^3/mcl): unknown
platelet (x10^3/mcl): unknown
hemoglobin (g/dl): unknown
anc (x10^3/mcl): unknown
iPSs: unknown
cytogenetic risk group: unknown
cytogenetics: unknown
|
|
| Sample_geo_accession | GSM747440
| | Sample_status | Public on Nov 23 2011
| | Sample_submission_date | Jun 24 2011
| | Sample_last_update_date | Nov 23 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | CD34+ cells were purified using the autoMACS system (Miltenyi)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA isolated using TRI Reagent (Sigma, St. Louis, MO) was purified with an RNeasy mini kit (Qiagen, Valencia, CA).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Chips labeled with biotin according to Manufacturer's protocol
| | Sample_hyb_protocol | Chips hybridized according to Manufacturer's protocol
| | Sample_scan_protocol | standard Affymetrix protocol using GS3000
| | Sample_data_processing | Data corrected to 1500 Baseline
| | Sample_platform_id | GPL570
| | Sample_contact_name | Rekha,,Meyer
| | Sample_contact_email | rmeyer@pathbox.wustl.edu
| | Sample_contact_phone | 314 362 8853
| | Sample_contact_institute | Washington University School of Medicine
| | Sample_contact_address | 4320 Forest Park Av
| | Sample_contact_city | St Louis
| | Sample_contact_state | MO
| | Sample_contact_zip/postal_code | 63128
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM747nnn/GSM747440/suppl/GSM747440_13678.CEL.gz
| | Sample_series_id | GSE30195
| | Sample_data_row_count | 54675
| | |
|
GSM747441 | GPL570 |
|
RNA control rep5
|
CD34+ purified control bone marrow
|
genotype: control
disease state: control
cell type: CD34+ purified control bone marrow
age on study: unknown
race: unknown
banking date: unknown
diagnosis date: unknown
duration of disease (month): unknown
Sex: unknown
fab: unknown
bone marrow myeloblast(%): unknown
wbc (x10^3/mcl): unknown
platelet (x10^3/mcl): unknown
hemoglobin (g/dl): unknown
anc (x10^3/mcl): unknown
iPSs: unknown
cytogenetic risk group: unknown
cytogenetics: unknown
|
|
| Sample_geo_accession | GSM747441
| | Sample_status | Public on Nov 23 2011
| | Sample_submission_date | Jun 24 2011
| | Sample_last_update_date | Nov 23 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | CD34+ cells were purified using the autoMACS system (Miltenyi)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA isolated using TRI Reagent (Sigma, St. Louis, MO) was purified with an RNeasy mini kit (Qiagen, Valencia, CA).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Chips labeled with biotin according to Manufacturer's protocol
| | Sample_hyb_protocol | Chips hybridized according to Manufacturer's protocol
| | Sample_scan_protocol | standard Affymetrix protocol using GS3000
| | Sample_data_processing | Data corrected to 1500 Baseline
| | Sample_platform_id | GPL570
| | Sample_contact_name | Rekha,,Meyer
| | Sample_contact_email | rmeyer@pathbox.wustl.edu
| | Sample_contact_phone | 314 362 8853
| | Sample_contact_institute | Washington University School of Medicine
| | Sample_contact_address | 4320 Forest Park Av
| | Sample_contact_city | St Louis
| | Sample_contact_state | MO
| | Sample_contact_zip/postal_code | 63128
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM747nnn/GSM747441/suppl/GSM747441_13679.CEL.gz
| | Sample_series_id | GSE30195
| | Sample_data_row_count | 54675
| | |
|
GSM747442 | GPL570 |
|
RNA control rep6
|
CD34+ purified control bone marrow
|
genotype: control
disease state: control
cell type: CD34+ purified control bone marrow
age on study: unknown
race: unknown
banking date: unknown
diagnosis date: unknown
duration of disease (month): unknown
Sex: unknown
fab: unknown
bone marrow myeloblast(%): unknown
wbc (x10^3/mcl): unknown
platelet (x10^3/mcl): unknown
hemoglobin (g/dl): unknown
anc (x10^3/mcl): unknown
iPSs: unknown
cytogenetic risk group: unknown
cytogenetics: unknown
|
|
| Sample_geo_accession | GSM747442
| | Sample_status | Public on Nov 23 2011
| | Sample_submission_date | Jun 24 2011
| | Sample_last_update_date | Nov 23 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | CD34+ cells were purified using the autoMACS system (Miltenyi)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA isolated using TRI Reagent (Sigma, St. Louis, MO) was purified with an RNeasy mini kit (Qiagen, Valencia, CA).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Chips labeled with biotin according to Manufacturer's protocol
| | Sample_hyb_protocol | Chips hybridized according to Manufacturer's protocol
| | Sample_scan_protocol | standard Affymetrix protocol using GS3000
| | Sample_data_processing | Data corrected to 1500 Baseline
| | Sample_platform_id | GPL570
| | Sample_contact_name | Rekha,,Meyer
| | Sample_contact_email | rmeyer@pathbox.wustl.edu
| | Sample_contact_phone | 314 362 8853
| | Sample_contact_institute | Washington University School of Medicine
| | Sample_contact_address | 4320 Forest Park Av
| | Sample_contact_city | St Louis
| | Sample_contact_state | MO
| | Sample_contact_zip/postal_code | 63128
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM747nnn/GSM747442/suppl/GSM747442_13680.CEL.gz
| | Sample_series_id | GSE30195
| | Sample_data_row_count | 54675
| | |
|
| |
| |
Make groups for comparisons |
(2 groups will be compared at a time) |
|
| Select GSMs and click on "Add groups" |
Enter the group name here: |
|
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|
