Search results for the GEO ID: GSE30248  |
(Click on the check boxes provided under "Select for analysis", to initiate grouping) |
(Once the selection is made, click on "Add groups" in "Make groups for comparison", to make a group. Scroll down) |
|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM749434 | GPL1261 |
|
WT, Rep1
|
Wild Type mouse spleen B-cells
|
genotype: Wild Type
|
Gene expression data from WT FVB mouse B-cells
|
| Sample_geo_accession | GSM749434
| | Sample_status | Public on Dec 03 2012
| | Sample_submission_date | Jun 27 2011
| | Sample_last_update_date | Dec 03 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | B-cells were isolated from mice spleens using B-cell isolation kit (MACs, Miltenyi). Total RNA was extracted using Trizol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | 1ug RNA was used to generate cRNA according to the manufacturer’s protocol in the Affymetrix GeneChip® Expression Analysis Technical Manual.
| | Sample_hyb_protocol | 15ug of labeled and fragmented cRNA was hybridized at 45C for 16 hours at 60rpm to Mouse Genome 430_2 chips. GeneChips were then washed and stained on the Affymetrix Fluidics Station 450 according to the manufacturer’s protocol
| | Sample_scan_protocol | GeneChips were scanned with the Affymetrix GeneChip Scanner 3000 7G. Raw data files were generated and processed with Affymetrix AGCC software.
| | Sample_data_processing | The data was used using Bioconductor and GCRMA normalization.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Sukhinder,,Sandhu
| | Sample_contact_email | sukhinder.sandhu@osumc.edu
| | Sample_contact_institute | The Ohio State University
| | Sample_contact_address | 460 W 12th Ave
| | Sample_contact_city | Columbus
| | Sample_contact_state | OH
| | Sample_contact_zip/postal_code | 43210
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM749nnn/GSM749434/suppl/GSM749434.CEL.gz
| | Sample_series_id | GSE30248
| | Sample_data_row_count | 45101
| | |
|
GSM749435 | GPL1261 |
|
WT, Rep2
|
Wild Type mouse spleen B-cells
|
genotype: Wild Type
|
Gene expression data from WT FVB mouse B-cells
|
| Sample_geo_accession | GSM749435
| | Sample_status | Public on Dec 03 2012
| | Sample_submission_date | Jun 27 2011
| | Sample_last_update_date | Dec 03 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | B-cells were isolated from mice spleens using B-cell isolation kit (MACs, Miltenyi). Total RNA was extracted using Trizol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | 1ug RNA was used to generate cRNA according to the manufacturer’s protocol in the Affymetrix GeneChip® Expression Analysis Technical Manual.
| | Sample_hyb_protocol | 15ug of labeled and fragmented cRNA was hybridized at 45C for 16 hours at 60rpm to Mouse Genome 430_2 chips. GeneChips were then washed and stained on the Affymetrix Fluidics Station 450 according to the manufacturer’s protocol
| | Sample_scan_protocol | GeneChips were scanned with the Affymetrix GeneChip Scanner 3000 7G. Raw data files were generated and processed with Affymetrix AGCC software.
| | Sample_data_processing | The data was used using Bioconductor and GCRMA normalization.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Sukhinder,,Sandhu
| | Sample_contact_email | sukhinder.sandhu@osumc.edu
| | Sample_contact_institute | The Ohio State University
| | Sample_contact_address | 460 W 12th Ave
| | Sample_contact_city | Columbus
| | Sample_contact_state | OH
| | Sample_contact_zip/postal_code | 43210
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM749nnn/GSM749435/suppl/GSM749435.CEL.gz
| | Sample_series_id | GSE30248
| | Sample_data_row_count | 45101
| | |
|
GSM749436 | GPL1261 |
|
WT, Rep3
|
Wild Type mouse spleen B-cells
|
genotype: Wild Type
|
Gene expression data from WT FVB mouse B-cells
|
| Sample_geo_accession | GSM749436
| | Sample_status | Public on Dec 03 2012
| | Sample_submission_date | Jun 27 2011
| | Sample_last_update_date | Dec 03 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | B-cells were isolated from mice spleens using B-cell isolation kit (MACs, Miltenyi). Total RNA was extracted using Trizol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | 1ug RNA was used to generate cRNA according to the manufacturer’s protocol in the Affymetrix GeneChip® Expression Analysis Technical Manual.
| | Sample_hyb_protocol | 15ug of labeled and fragmented cRNA was hybridized at 45C for 16 hours at 60rpm to Mouse Genome 430_2 chips. GeneChips were then washed and stained on the Affymetrix Fluidics Station 450 according to the manufacturer’s protocol
| | Sample_scan_protocol | GeneChips were scanned with the Affymetrix GeneChip Scanner 3000 7G. Raw data files were generated and processed with Affymetrix AGCC software.
| | Sample_data_processing | The data was used using Bioconductor and GCRMA normalization.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Sukhinder,,Sandhu
| | Sample_contact_email | sukhinder.sandhu@osumc.edu
| | Sample_contact_institute | The Ohio State University
| | Sample_contact_address | 460 W 12th Ave
| | Sample_contact_city | Columbus
| | Sample_contact_state | OH
| | Sample_contact_zip/postal_code | 43210
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM749nnn/GSM749436/suppl/GSM749436.CEL.gz
| | Sample_series_id | GSE30248
| | Sample_data_row_count | 45101
| | |
|
GSM749437 | GPL1261 |
|
WT, Rep4
|
Wild Type mouse spleen B-cells
|
genotype: Wild Type
|
Gene expression data from WT FVB mouse B-cells
|
| Sample_geo_accession | GSM749437
| | Sample_status | Public on Dec 03 2012
| | Sample_submission_date | Jun 27 2011
| | Sample_last_update_date | Dec 03 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | B-cells were isolated from mice spleens using B-cell isolation kit (MACs, Miltenyi). Total RNA was extracted using Trizol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | 1ug RNA was used to generate cRNA according to the manufacturer’s protocol in the Affymetrix GeneChip® Expression Analysis Technical Manual.
| | Sample_hyb_protocol | 15ug of labeled and fragmented cRNA was hybridized at 45C for 16 hours at 60rpm to Mouse Genome 430_2 chips. GeneChips were then washed and stained on the Affymetrix Fluidics Station 450 according to the manufacturer’s protocol
| | Sample_scan_protocol | GeneChips were scanned with the Affymetrix GeneChip Scanner 3000 7G. Raw data files were generated and processed with Affymetrix AGCC software.
| | Sample_data_processing | The data was used using Bioconductor and GCRMA normalization.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Sukhinder,,Sandhu
| | Sample_contact_email | sukhinder.sandhu@osumc.edu
| | Sample_contact_institute | The Ohio State University
| | Sample_contact_address | 460 W 12th Ave
| | Sample_contact_city | Columbus
| | Sample_contact_state | OH
| | Sample_contact_zip/postal_code | 43210
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM749nnn/GSM749437/suppl/GSM749437.CEL.gz
| | Sample_series_id | GSE30248
| | Sample_data_row_count | 45101
| | |
|
GSM749438 | GPL1261 |
|
TG, Rep1
|
Eu-miR-155 Transgenic mouse spleen B-cells
|
genotype: Transgenic
|
Gene expression data from TG FVB mouse B-cells
|
| Sample_geo_accession | GSM749438
| | Sample_status | Public on Dec 03 2012
| | Sample_submission_date | Jun 27 2011
| | Sample_last_update_date | Dec 03 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | B-cells were isolated from mice spleens using B-cell isolation kit (MACs, Miltenyi). Total RNA was extracted using Trizol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | 1ug RNA was used to generate cRNA according to the manufacturer’s protocol in the Affymetrix GeneChip® Expression Analysis Technical Manual.
| | Sample_hyb_protocol | 15ug of labeled and fragmented cRNA was hybridized at 45C for 16 hours at 60rpm to Mouse Genome 430_2 chips. GeneChips were then washed and stained on the Affymetrix Fluidics Station 450 according to the manufacturer’s protocol
| | Sample_scan_protocol | GeneChips were scanned with the Affymetrix GeneChip Scanner 3000 7G. Raw data files were generated and processed with Affymetrix AGCC software.
| | Sample_data_processing | The data was used using Bioconductor and GCRMA normalization.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Sukhinder,,Sandhu
| | Sample_contact_email | sukhinder.sandhu@osumc.edu
| | Sample_contact_institute | The Ohio State University
| | Sample_contact_address | 460 W 12th Ave
| | Sample_contact_city | Columbus
| | Sample_contact_state | OH
| | Sample_contact_zip/postal_code | 43210
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM749nnn/GSM749438/suppl/GSM749438.CEL.gz
| | Sample_series_id | GSE30248
| | Sample_data_row_count | 45101
| | |
|
GSM749439 | GPL1261 |
|
TG, Rep2
|
Eu-miR-155 Transgenic mouse spleen B-cells
|
genotype: Transgenic
|
Gene expression data from TG FVB mouse B-cells
|
| Sample_geo_accession | GSM749439
| | Sample_status | Public on Dec 03 2012
| | Sample_submission_date | Jun 27 2011
| | Sample_last_update_date | Dec 03 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | B-cells were isolated from mice spleens using B-cell isolation kit (MACs, Miltenyi). Total RNA was extracted using Trizol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | 1ug RNA was used to generate cRNA according to the manufacturer’s protocol in the Affymetrix GeneChip® Expression Analysis Technical Manual.
| | Sample_hyb_protocol | 15ug of labeled and fragmented cRNA was hybridized at 45C for 16 hours at 60rpm to Mouse Genome 430_2 chips. GeneChips were then washed and stained on the Affymetrix Fluidics Station 450 according to the manufacturer’s protocol
| | Sample_scan_protocol | GeneChips were scanned with the Affymetrix GeneChip Scanner 3000 7G. Raw data files were generated and processed with Affymetrix AGCC software.
| | Sample_data_processing | The data was used using Bioconductor and GCRMA normalization.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Sukhinder,,Sandhu
| | Sample_contact_email | sukhinder.sandhu@osumc.edu
| | Sample_contact_institute | The Ohio State University
| | Sample_contact_address | 460 W 12th Ave
| | Sample_contact_city | Columbus
| | Sample_contact_state | OH
| | Sample_contact_zip/postal_code | 43210
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM749nnn/GSM749439/suppl/GSM749439.CEL.gz
| | Sample_series_id | GSE30248
| | Sample_data_row_count | 45101
| | |
|
GSM749440 | GPL1261 |
|
TG, Rep3
|
Eu-miR-155 Transgenic mouse spleen B-cells
|
genotype: Transgenic
|
Gene expression data from TG FVB mouse B-cells
|
| Sample_geo_accession | GSM749440
| | Sample_status | Public on Dec 03 2012
| | Sample_submission_date | Jun 27 2011
| | Sample_last_update_date | Dec 03 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | B-cells were isolated from mice spleens using B-cell isolation kit (MACs, Miltenyi). Total RNA was extracted using Trizol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | 1ug RNA was used to generate cRNA according to the manufacturer’s protocol in the Affymetrix GeneChip® Expression Analysis Technical Manual.
| | Sample_hyb_protocol | 15ug of labeled and fragmented cRNA was hybridized at 45C for 16 hours at 60rpm to Mouse Genome 430_2 chips. GeneChips were then washed and stained on the Affymetrix Fluidics Station 450 according to the manufacturer’s protocol
| | Sample_scan_protocol | GeneChips were scanned with the Affymetrix GeneChip Scanner 3000 7G. Raw data files were generated and processed with Affymetrix AGCC software.
| | Sample_data_processing | The data was used using Bioconductor and GCRMA normalization.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Sukhinder,,Sandhu
| | Sample_contact_email | sukhinder.sandhu@osumc.edu
| | Sample_contact_institute | The Ohio State University
| | Sample_contact_address | 460 W 12th Ave
| | Sample_contact_city | Columbus
| | Sample_contact_state | OH
| | Sample_contact_zip/postal_code | 43210
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM749nnn/GSM749440/suppl/GSM749440.CEL.gz
| | Sample_series_id | GSE30248
| | Sample_data_row_count | 45101
| | |
|
| |
| |
Make groups for comparisons |
(2 groups will be compared at a time) |
|
| Select GSMs and click on "Add groups" |
Enter the group name here: |
|
|
|
