Search results for the GEO ID: GSE30375  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM753651 | GPL3921 |
|
1A
|
1-CD34+/CD38-
|
sample #: 1
cell source: AML
leukemia stem cells (lsc): LSC+
sorted fraction: CD34+/CD38-
|
|
| Sample_geo_accession | GSM753651
| | Sample_status | Public on Aug 28 2011
| | Sample_submission_date | Jul 01 2011
| | Sample_last_update_date | Oct 20 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | Standard protocol for primary human tissue
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | TriZol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | RNA was amplified using the Ovation Biotin RNA Amplification and Labeling System (NuGEN, San Carlos, CA). Biotinylated cRNA were prepared according to the standard Affymetrix protocol from Nugen amplified RNA.
| | Sample_hyb_protocol | The cDNA was fragmented, labeled and hybridized to Affymetrix HT_HG-U133A microarrays (Affymetrix, Santa Clara, CA)
| | Sample_scan_protocol | standard Affymetrix protocol
| | Sample_data_processing | Data was normalized by robust multichip average using GeneSpring GX (Agilent).
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Kolja,,Eppert
| | Sample_contact_institute | University Health Network
| | Sample_contact_address | 101 College St., rm 8-301
| | Sample_contact_city | Toronto
| | Sample_contact_state | Ontario
| | Sample_contact_zip/postal_code | M5G 1L7
| | Sample_contact_country | Canada
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM753nnn/GSM753651/suppl/GSM753651.CEL.gz
| | Sample_series_id | GSE30375
| | Sample_series_id | GSE30377
| | Sample_data_row_count | 22215
| | |
|
GSM753652 | GPL3921 |
|
1C
|
1-CD34+/CD38+
|
sample #: 1
cell source: AML
leukemia stem cells (lsc): LSC+
sorted fraction: CD34+/CD38+
|
|
| Sample_geo_accession | GSM753652
| | Sample_status | Public on Aug 28 2011
| | Sample_submission_date | Jul 01 2011
| | Sample_last_update_date | Oct 20 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | Standard protocol for primary human tissue
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | TriZol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | RNA was amplified using the Ovation Biotin RNA Amplification and Labeling System (NuGEN, San Carlos, CA). Biotinylated cRNA were prepared according to the standard Affymetrix protocol from Nugen amplified RNA.
| | Sample_hyb_protocol | The cDNA was fragmented, labeled and hybridized to Affymetrix HT_HG-U133A microarrays (Affymetrix, Santa Clara, CA)
| | Sample_scan_protocol | standard Affymetrix protocol
| | Sample_data_processing | Data was normalized by robust multichip average using GeneSpring GX (Agilent).
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Kolja,,Eppert
| | Sample_contact_institute | University Health Network
| | Sample_contact_address | 101 College St., rm 8-301
| | Sample_contact_city | Toronto
| | Sample_contact_state | Ontario
| | Sample_contact_zip/postal_code | M5G 1L7
| | Sample_contact_country | Canada
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM753nnn/GSM753652/suppl/GSM753652.CEL.gz
| | Sample_series_id | GSE30375
| | Sample_series_id | GSE30377
| | Sample_data_row_count | 22215
| | |
|
GSM753653 | GPL3921 |
|
1E
|
1-CD34-/CD38+
|
sample #: 1
cell source: AML
leukemia stem cells (lsc): LSC-
sorted fraction: CD34-/CD38+
|
|
| Sample_geo_accession | GSM753653
| | Sample_status | Public on Aug 28 2011
| | Sample_submission_date | Jul 01 2011
| | Sample_last_update_date | Oct 20 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | Standard protocol for primary human tissue
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | TriZol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | RNA was amplified using the Ovation Biotin RNA Amplification and Labeling System (NuGEN, San Carlos, CA). Biotinylated cRNA were prepared according to the standard Affymetrix protocol from Nugen amplified RNA.
| | Sample_hyb_protocol | The cDNA was fragmented, labeled and hybridized to Affymetrix HT_HG-U133A microarrays (Affymetrix, Santa Clara, CA)
| | Sample_scan_protocol | standard Affymetrix protocol
| | Sample_data_processing | Data was normalized by robust multichip average using GeneSpring GX (Agilent).
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Kolja,,Eppert
| | Sample_contact_institute | University Health Network
| | Sample_contact_address | 101 College St., rm 8-301
| | Sample_contact_city | Toronto
| | Sample_contact_state | Ontario
| | Sample_contact_zip/postal_code | M5G 1L7
| | Sample_contact_country | Canada
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM753nnn/GSM753653/suppl/GSM753653.CEL.gz
| | Sample_series_id | GSE30375
| | Sample_series_id | GSE30377
| | Sample_data_row_count | 22215
| | |
|
GSM753654 | GPL3921 |
|
1G
|
1-CD34-/CD38-
|
sample #: 1
cell source: AML
leukemia stem cells (lsc): LSC-
sorted fraction: CD34-/CD38-
|
|
| Sample_geo_accession | GSM753654
| | Sample_status | Public on Aug 28 2011
| | Sample_submission_date | Jul 01 2011
| | Sample_last_update_date | Oct 20 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | Standard protocol for primary human tissue
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | TriZol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | RNA was amplified using the Ovation Biotin RNA Amplification and Labeling System (NuGEN, San Carlos, CA). Biotinylated cRNA were prepared according to the standard Affymetrix protocol from Nugen amplified RNA.
| | Sample_hyb_protocol | The cDNA was fragmented, labeled and hybridized to Affymetrix HT_HG-U133A microarrays (Affymetrix, Santa Clara, CA)
| | Sample_scan_protocol | standard Affymetrix protocol
| | Sample_data_processing | Data was normalized by robust multichip average using GeneSpring GX (Agilent).
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Kolja,,Eppert
| | Sample_contact_institute | University Health Network
| | Sample_contact_address | 101 College St., rm 8-301
| | Sample_contact_city | Toronto
| | Sample_contact_state | Ontario
| | Sample_contact_zip/postal_code | M5G 1L7
| | Sample_contact_country | Canada
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM753nnn/GSM753654/suppl/GSM753654.CEL.gz
| | Sample_series_id | GSE30375
| | Sample_series_id | GSE30377
| | Sample_data_row_count | 22215
| | |
|
GSM753655 | GPL3921 |
|
1H
|
1-Unsorted
|
sample #: 1
cell source: AML
leukemia stem cells (lsc): N/A
sorted fraction: Unsorted
|
|
| Sample_geo_accession | GSM753655
| | Sample_status | Public on Aug 28 2011
| | Sample_submission_date | Jul 01 2011
| | Sample_last_update_date | Oct 20 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | Standard protocol for primary human tissue
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | TriZol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | RNA was amplified using the Ovation Biotin RNA Amplification and Labeling System (NuGEN, San Carlos, CA). Biotinylated cRNA were prepared according to the standard Affymetrix protocol from Nugen amplified RNA.
| | Sample_hyb_protocol | The cDNA was fragmented, labeled and hybridized to Affymetrix HT_HG-U133A microarrays (Affymetrix, Santa Clara, CA)
| | Sample_scan_protocol | standard Affymetrix protocol
| | Sample_data_processing | Data was normalized by robust multichip average using GeneSpring GX (Agilent).
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Kolja,,Eppert
| | Sample_contact_institute | University Health Network
| | Sample_contact_address | 101 College St., rm 8-301
| | Sample_contact_city | Toronto
| | Sample_contact_state | Ontario
| | Sample_contact_zip/postal_code | M5G 1L7
| | Sample_contact_country | Canada
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM753nnn/GSM753655/suppl/GSM753655.CEL.gz
| | Sample_series_id | GSE30375
| | Sample_series_id | GSE30377
| | Sample_data_row_count | 22215
| | |
|
GSM753656 | GPL3921 |
|
2A
|
2-CD34+/CD38-
|
sample #: 2
cell source: AML
leukemia stem cells (lsc): LSC+
sorted fraction: CD34+/CD38-
|
|
| Sample_geo_accession | GSM753656
| | Sample_status | Public on Aug 28 2011
| | Sample_submission_date | Jul 01 2011
| | Sample_last_update_date | Oct 20 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | Standard protocol for primary human tissue
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | TriZol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | RNA was amplified using the Ovation Biotin RNA Amplification and Labeling System (NuGEN, San Carlos, CA). Biotinylated cRNA were prepared according to the standard Affymetrix protocol from Nugen amplified RNA.
| | Sample_hyb_protocol | The cDNA was fragmented, labeled and hybridized to Affymetrix HT_HG-U133A microarrays (Affymetrix, Santa Clara, CA)
| | Sample_scan_protocol | standard Affymetrix protocol
| | Sample_data_processing | Data was normalized by robust multichip average using GeneSpring GX (Agilent).
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Kolja,,Eppert
| | Sample_contact_institute | University Health Network
| | Sample_contact_address | 101 College St., rm 8-301
| | Sample_contact_city | Toronto
| | Sample_contact_state | Ontario
| | Sample_contact_zip/postal_code | M5G 1L7
| | Sample_contact_country | Canada
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM753nnn/GSM753656/suppl/GSM753656.CEL.gz
| | Sample_series_id | GSE30375
| | Sample_series_id | GSE30377
| | Sample_data_row_count | 22215
| | |
|
GSM753657 | GPL3921 |
|
2C
|
2-CD34+/CD38+
|
sample #: 2
cell source: AML
leukemia stem cells (lsc): LSC+
sorted fraction: CD34+/CD38+
|
|
| Sample_geo_accession | GSM753657
| | Sample_status | Public on Aug 28 2011
| | Sample_submission_date | Jul 01 2011
| | Sample_last_update_date | Oct 20 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | Standard protocol for primary human tissue
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | TriZol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | RNA was amplified using the Ovation Biotin RNA Amplification and Labeling System (NuGEN, San Carlos, CA). Biotinylated cRNA were prepared according to the standard Affymetrix protocol from Nugen amplified RNA.
| | Sample_hyb_protocol | The cDNA was fragmented, labeled and hybridized to Affymetrix HT_HG-U133A microarrays (Affymetrix, Santa Clara, CA)
| | Sample_scan_protocol | standard Affymetrix protocol
| | Sample_data_processing | Data was normalized by robust multichip average using GeneSpring GX (Agilent).
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Kolja,,Eppert
| | Sample_contact_institute | University Health Network
| | Sample_contact_address | 101 College St., rm 8-301
| | Sample_contact_city | Toronto
| | Sample_contact_state | Ontario
| | Sample_contact_zip/postal_code | M5G 1L7
| | Sample_contact_country | Canada
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM753nnn/GSM753657/suppl/GSM753657.CEL.gz
| | Sample_series_id | GSE30375
| | Sample_series_id | GSE30377
| | Sample_data_row_count | 22215
| | |
|
GSM753658 | GPL3921 |
|
2E
|
2-CD34-/CD38+
|
sample #: 2
cell source: AML
leukemia stem cells (lsc): LSC-
sorted fraction: CD34-/CD38+
|
|
| Sample_geo_accession | GSM753658
| | Sample_status | Public on Aug 28 2011
| | Sample_submission_date | Jul 01 2011
| | Sample_last_update_date | Oct 20 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | Standard protocol for primary human tissue
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | TriZol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | RNA was amplified using the Ovation Biotin RNA Amplification and Labeling System (NuGEN, San Carlos, CA). Biotinylated cRNA were prepared according to the standard Affymetrix protocol from Nugen amplified RNA.
| | Sample_hyb_protocol | The cDNA was fragmented, labeled and hybridized to Affymetrix HT_HG-U133A microarrays (Affymetrix, Santa Clara, CA)
| | Sample_scan_protocol | standard Affymetrix protocol
| | Sample_data_processing | Data was normalized by robust multichip average using GeneSpring GX (Agilent).
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Kolja,,Eppert
| | Sample_contact_institute | University Health Network
| | Sample_contact_address | 101 College St., rm 8-301
| | Sample_contact_city | Toronto
| | Sample_contact_state | Ontario
| | Sample_contact_zip/postal_code | M5G 1L7
| | Sample_contact_country | Canada
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM753nnn/GSM753658/suppl/GSM753658.CEL.gz
| | Sample_series_id | GSE30375
| | Sample_series_id | GSE30377
| | Sample_data_row_count | 22215
| | |
|
GSM753659 | GPL3921 |
|
2G
|
2-CD34-/CD38-
|
sample #: 2
cell source: AML
leukemia stem cells (lsc): LSC-
sorted fraction: CD34-/CD38-
|
|
| Sample_geo_accession | GSM753659
| | Sample_status | Public on Aug 28 2011
| | Sample_submission_date | Jul 01 2011
| | Sample_last_update_date | Oct 20 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | Standard protocol for primary human tissue
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | TriZol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | RNA was amplified using the Ovation Biotin RNA Amplification and Labeling System (NuGEN, San Carlos, CA). Biotinylated cRNA were prepared according to the standard Affymetrix protocol from Nugen amplified RNA.
| | Sample_hyb_protocol | The cDNA was fragmented, labeled and hybridized to Affymetrix HT_HG-U133A microarrays (Affymetrix, Santa Clara, CA)
| | Sample_scan_protocol | standard Affymetrix protocol
| | Sample_data_processing | Data was normalized by robust multichip average using GeneSpring GX (Agilent).
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Kolja,,Eppert
| | Sample_contact_institute | University Health Network
| | Sample_contact_address | 101 College St., rm 8-301
| | Sample_contact_city | Toronto
| | Sample_contact_state | Ontario
| | Sample_contact_zip/postal_code | M5G 1L7
| | Sample_contact_country | Canada
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM753nnn/GSM753659/suppl/GSM753659.CEL.gz
| | Sample_series_id | GSE30375
| | Sample_series_id | GSE30377
| | Sample_data_row_count | 22215
| | |
|
GSM753660 | GPL3921 |
|
2H
|
2-Unsorted
|
sample #: 2
cell source: AML
leukemia stem cells (lsc): N/A
sorted fraction: Unsorted
|
|
| Sample_geo_accession | GSM753660
| | Sample_status | Public on Aug 28 2011
| | Sample_submission_date | Jul 01 2011
| | Sample_last_update_date | Oct 20 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | Standard protocol for primary human tissue
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | TriZol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | RNA was amplified using the Ovation Biotin RNA Amplification and Labeling System (NuGEN, San Carlos, CA). Biotinylated cRNA were prepared according to the standard Affymetrix protocol from Nugen amplified RNA.
| | Sample_hyb_protocol | The cDNA was fragmented, labeled and hybridized to Affymetrix HT_HG-U133A microarrays (Affymetrix, Santa Clara, CA)
| | Sample_scan_protocol | standard Affymetrix protocol
| | Sample_data_processing | Data was normalized by robust multichip average using GeneSpring GX (Agilent).
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Kolja,,Eppert
| | Sample_contact_institute | University Health Network
| | Sample_contact_address | 101 College St., rm 8-301
| | Sample_contact_city | Toronto
| | Sample_contact_state | Ontario
| | Sample_contact_zip/postal_code | M5G 1L7
| | Sample_contact_country | Canada
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM753nnn/GSM753660/suppl/GSM753660.CEL.gz
| | Sample_series_id | GSE30375
| | Sample_series_id | GSE30377
| | Sample_data_row_count | 22215
| | |
|
GSM753661 | GPL3921 |
|
3A
|
3-CD34+/CD38-
|
sample #: 3
cell source: AML
leukemia stem cells (lsc): LSC+
sorted fraction: CD34+/CD38-
|
|
| Sample_geo_accession | GSM753661
| | Sample_status | Public on Aug 28 2011
| | Sample_submission_date | Jul 01 2011
| | Sample_last_update_date | Oct 20 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | Standard protocol for primary human tissue
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | TriZol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | RNA was amplified using the Ovation Biotin RNA Amplification and Labeling System (NuGEN, San Carlos, CA). Biotinylated cRNA were prepared according to the standard Affymetrix protocol from Nugen amplified RNA.
| | Sample_hyb_protocol | The cDNA was fragmented, labeled and hybridized to Affymetrix HT_HG-U133A microarrays (Affymetrix, Santa Clara, CA)
| | Sample_scan_protocol | standard Affymetrix protocol
| | Sample_data_processing | Data was normalized by robust multichip average using GeneSpring GX (Agilent).
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Kolja,,Eppert
| | Sample_contact_institute | University Health Network
| | Sample_contact_address | 101 College St., rm 8-301
| | Sample_contact_city | Toronto
| | Sample_contact_state | Ontario
| | Sample_contact_zip/postal_code | M5G 1L7
| | Sample_contact_country | Canada
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM753nnn/GSM753661/suppl/GSM753661.CEL.gz
| | Sample_series_id | GSE30375
| | Sample_series_id | GSE30377
| | Sample_data_row_count | 22215
| | |
|
GSM753662 | GPL3921 |
|
3C
|
3-CD34+/CD38+
|
sample #: 3
cell source: AML
leukemia stem cells (lsc): LSC+
sorted fraction: CD34+/CD38+
|
|
| Sample_geo_accession | GSM753662
| | Sample_status | Public on Aug 28 2011
| | Sample_submission_date | Jul 01 2011
| | Sample_last_update_date | Oct 20 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | Standard protocol for primary human tissue
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | TriZol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | RNA was amplified using the Ovation Biotin RNA Amplification and Labeling System (NuGEN, San Carlos, CA). Biotinylated cRNA were prepared according to the standard Affymetrix protocol from Nugen amplified RNA.
| | Sample_hyb_protocol | The cDNA was fragmented, labeled and hybridized to Affymetrix HT_HG-U133A microarrays (Affymetrix, Santa Clara, CA)
| | Sample_scan_protocol | standard Affymetrix protocol
| | Sample_data_processing | Data was normalized by robust multichip average using GeneSpring GX (Agilent).
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Kolja,,Eppert
| | Sample_contact_institute | University Health Network
| | Sample_contact_address | 101 College St., rm 8-301
| | Sample_contact_city | Toronto
| | Sample_contact_state | Ontario
| | Sample_contact_zip/postal_code | M5G 1L7
| | Sample_contact_country | Canada
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM753nnn/GSM753662/suppl/GSM753662.CEL.gz
| | Sample_series_id | GSE30375
| | Sample_series_id | GSE30377
| | Sample_data_row_count | 22215
| | |
|
GSM753663 | GPL3921 |
|
3E
|
3-CD34-/CD38+
|
sample #: 3
cell source: AML
leukemia stem cells (lsc): LSC+
sorted fraction: CD34-/CD38+
|
|
| Sample_geo_accession | GSM753663
| | Sample_status | Public on Aug 28 2011
| | Sample_submission_date | Jul 01 2011
| | Sample_last_update_date | Oct 20 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | Standard protocol for primary human tissue
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | TriZol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | RNA was amplified using the Ovation Biotin RNA Amplification and Labeling System (NuGEN, San Carlos, CA). Biotinylated cRNA were prepared according to the standard Affymetrix protocol from Nugen amplified RNA.
| | Sample_hyb_protocol | The cDNA was fragmented, labeled and hybridized to Affymetrix HT_HG-U133A microarrays (Affymetrix, Santa Clara, CA)
| | Sample_scan_protocol | standard Affymetrix protocol
| | Sample_data_processing | Data was normalized by robust multichip average using GeneSpring GX (Agilent).
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Kolja,,Eppert
| | Sample_contact_institute | University Health Network
| | Sample_contact_address | 101 College St., rm 8-301
| | Sample_contact_city | Toronto
| | Sample_contact_state | Ontario
| | Sample_contact_zip/postal_code | M5G 1L7
| | Sample_contact_country | Canada
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM753nnn/GSM753663/suppl/GSM753663.CEL.gz
| | Sample_series_id | GSE30375
| | Sample_series_id | GSE30377
| | Sample_data_row_count | 22215
| | |
|
GSM753664 | GPL3921 |
|
3G
|
3-CD34-/CD38-
|
sample #: 3
cell source: AML
leukemia stem cells (lsc): LSC+
sorted fraction: CD34-/CD38-
|
|
| Sample_geo_accession | GSM753664
| | Sample_status | Public on Aug 28 2011
| | Sample_submission_date | Jul 01 2011
| | Sample_last_update_date | Oct 20 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | Standard protocol for primary human tissue
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | TriZol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | RNA was amplified using the Ovation Biotin RNA Amplification and Labeling System (NuGEN, San Carlos, CA). Biotinylated cRNA were prepared according to the standard Affymetrix protocol from Nugen amplified RNA.
| | Sample_hyb_protocol | The cDNA was fragmented, labeled and hybridized to Affymetrix HT_HG-U133A microarrays (Affymetrix, Santa Clara, CA)
| | Sample_scan_protocol | standard Affymetrix protocol
| | Sample_data_processing | Data was normalized by robust multichip average using GeneSpring GX (Agilent).
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Kolja,,Eppert
| | Sample_contact_institute | University Health Network
| | Sample_contact_address | 101 College St., rm 8-301
| | Sample_contact_city | Toronto
| | Sample_contact_state | Ontario
| | Sample_contact_zip/postal_code | M5G 1L7
| | Sample_contact_country | Canada
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM753nnn/GSM753664/suppl/GSM753664.CEL.gz
| | Sample_series_id | GSE30375
| | Sample_series_id | GSE30377
| | Sample_data_row_count | 22215
| | |
|
GSM753665 | GPL3921 |
|
3H
|
3-Unsorted
|
sample #: 3
cell source: AML
leukemia stem cells (lsc): N/A
sorted fraction: Unsorted
|
|
| Sample_geo_accession | GSM753665
| | Sample_status | Public on Aug 28 2011
| | Sample_submission_date | Jul 01 2011
| | Sample_last_update_date | Oct 20 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | Standard protocol for primary human tissue
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | TriZol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | RNA was amplified using the Ovation Biotin RNA Amplification and Labeling System (NuGEN, San Carlos, CA). Biotinylated cRNA were prepared according to the standard Affymetrix protocol from Nugen amplified RNA.
| | Sample_hyb_protocol | The cDNA was fragmented, labeled and hybridized to Affymetrix HT_HG-U133A microarrays (Affymetrix, Santa Clara, CA)
| | Sample_scan_protocol | standard Affymetrix protocol
| | Sample_data_processing | Data was normalized by robust multichip average using GeneSpring GX (Agilent).
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Kolja,,Eppert
| | Sample_contact_institute | University Health Network
| | Sample_contact_address | 101 College St., rm 8-301
| | Sample_contact_city | Toronto
| | Sample_contact_state | Ontario
| | Sample_contact_zip/postal_code | M5G 1L7
| | Sample_contact_country | Canada
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM753nnn/GSM753665/suppl/GSM753665.CEL.gz
| | Sample_series_id | GSE30375
| | Sample_series_id | GSE30377
| | Sample_data_row_count | 22215
| | |
|
GSM753666 | GPL3921 |
|
4A
|
4-CD34+/CD38-
|
sample #: 4
cell source: AML
leukemia stem cells (lsc): LSC+
sorted fraction: CD34+/CD38-
|
|
| Sample_geo_accession | GSM753666
| | Sample_status | Public on Aug 28 2011
| | Sample_submission_date | Jul 01 2011
| | Sample_last_update_date | Oct 20 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | Standard protocol for primary human tissue
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | TriZol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | RNA was amplified using the Ovation Biotin RNA Amplification and Labeling System (NuGEN, San Carlos, CA). Biotinylated cRNA were prepared according to the standard Affymetrix protocol from Nugen amplified RNA.
| | Sample_hyb_protocol | The cDNA was fragmented, labeled and hybridized to Affymetrix HT_HG-U133A microarrays (Affymetrix, Santa Clara, CA)
| | Sample_scan_protocol | standard Affymetrix protocol
| | Sample_data_processing | Data was normalized by robust multichip average using GeneSpring GX (Agilent).
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Kolja,,Eppert
| | Sample_contact_institute | University Health Network
| | Sample_contact_address | 101 College St., rm 8-301
| | Sample_contact_city | Toronto
| | Sample_contact_state | Ontario
| | Sample_contact_zip/postal_code | M5G 1L7
| | Sample_contact_country | Canada
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM753nnn/GSM753666/suppl/GSM753666.CEL.gz
| | Sample_series_id | GSE30375
| | Sample_series_id | GSE30377
| | Sample_data_row_count | 22215
| | |
|
GSM753667 | GPL3921 |
|
4C
|
4-CD34+/CD38+
|
sample #: 4
cell source: AML
leukemia stem cells (lsc): LSC+
sorted fraction: CD34+/CD38+
|
|
| Sample_geo_accession | GSM753667
| | Sample_status | Public on Aug 28 2011
| | Sample_submission_date | Jul 01 2011
| | Sample_last_update_date | Oct 20 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | Standard protocol for primary human tissue
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | TriZol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | RNA was amplified using the Ovation Biotin RNA Amplification and Labeling System (NuGEN, San Carlos, CA). Biotinylated cRNA were prepared according to the standard Affymetrix protocol from Nugen amplified RNA.
| | Sample_hyb_protocol | The cDNA was fragmented, labeled and hybridized to Affymetrix HT_HG-U133A microarrays (Affymetrix, Santa Clara, CA)
| | Sample_scan_protocol | standard Affymetrix protocol
| | Sample_data_processing | Data was normalized by robust multichip average using GeneSpring GX (Agilent).
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Kolja,,Eppert
| | Sample_contact_institute | University Health Network
| | Sample_contact_address | 101 College St., rm 8-301
| | Sample_contact_city | Toronto
| | Sample_contact_state | Ontario
| | Sample_contact_zip/postal_code | M5G 1L7
| | Sample_contact_country | Canada
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM753nnn/GSM753667/suppl/GSM753667.CEL.gz
| | Sample_series_id | GSE30375
| | Sample_series_id | GSE30377
| | Sample_data_row_count | 22215
| | |
|
GSM753668 | GPL3921 |
|
4E
|
4-CD34-/CD38+
|
sample #: 4
cell source: AML
leukemia stem cells (lsc): LSC-
sorted fraction: CD34-/CD38+
|
|
| Sample_geo_accession | GSM753668
| | Sample_status | Public on Aug 28 2011
| | Sample_submission_date | Jul 01 2011
| | Sample_last_update_date | Oct 20 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | Standard protocol for primary human tissue
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | TriZol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | RNA was amplified using the Ovation Biotin RNA Amplification and Labeling System (NuGEN, San Carlos, CA). Biotinylated cRNA were prepared according to the standard Affymetrix protocol from Nugen amplified RNA.
| | Sample_hyb_protocol | The cDNA was fragmented, labeled and hybridized to Affymetrix HT_HG-U133A microarrays (Affymetrix, Santa Clara, CA)
| | Sample_scan_protocol | standard Affymetrix protocol
| | Sample_data_processing | Data was normalized by robust multichip average using GeneSpring GX (Agilent).
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Kolja,,Eppert
| | Sample_contact_institute | University Health Network
| | Sample_contact_address | 101 College St., rm 8-301
| | Sample_contact_city | Toronto
| | Sample_contact_state | Ontario
| | Sample_contact_zip/postal_code | M5G 1L7
| | Sample_contact_country | Canada
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM753nnn/GSM753668/suppl/GSM753668.CEL.gz
| | Sample_series_id | GSE30375
| | Sample_series_id | GSE30377
| | Sample_data_row_count | 22215
| | |
|
GSM753669 | GPL3921 |
|
4G
|
4-CD34-/CD38-
|
sample #: 4
cell source: AML
leukemia stem cells (lsc): LSC+
sorted fraction: CD34-/CD38-
|
|
| Sample_geo_accession | GSM753669
| | Sample_status | Public on Aug 28 2011
| | Sample_submission_date | Jul 01 2011
| | Sample_last_update_date | Oct 20 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | Standard protocol for primary human tissue
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | TriZol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | RNA was amplified using the Ovation Biotin RNA Amplification and Labeling System (NuGEN, San Carlos, CA). Biotinylated cRNA were prepared according to the standard Affymetrix protocol from Nugen amplified RNA.
| | Sample_hyb_protocol | The cDNA was fragmented, labeled and hybridized to Affymetrix HT_HG-U133A microarrays (Affymetrix, Santa Clara, CA)
| | Sample_scan_protocol | standard Affymetrix protocol
| | Sample_data_processing | Data was normalized by robust multichip average using GeneSpring GX (Agilent).
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Kolja,,Eppert
| | Sample_contact_institute | University Health Network
| | Sample_contact_address | 101 College St., rm 8-301
| | Sample_contact_city | Toronto
| | Sample_contact_state | Ontario
| | Sample_contact_zip/postal_code | M5G 1L7
| | Sample_contact_country | Canada
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM753nnn/GSM753669/suppl/GSM753669.CEL.gz
| | Sample_series_id | GSE30375
| | Sample_series_id | GSE30377
| | Sample_data_row_count | 22215
| | |
|
GSM753670 | GPL3921 |
|
4H
|
4-Unsorted
|
sample #: 4
cell source: AML
leukemia stem cells (lsc): N/A
sorted fraction: Unsorted
|
|
| Sample_geo_accession | GSM753670
| | Sample_status | Public on Aug 28 2011
| | Sample_submission_date | Jul 01 2011
| | Sample_last_update_date | Oct 20 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | Standard protocol for primary human tissue
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | TriZol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | RNA was amplified using the Ovation Biotin RNA Amplification and Labeling System (NuGEN, San Carlos, CA). Biotinylated cRNA were prepared according to the standard Affymetrix protocol from Nugen amplified RNA.
| | Sample_hyb_protocol | The cDNA was fragmented, labeled and hybridized to Affymetrix HT_HG-U133A microarrays (Affymetrix, Santa Clara, CA)
| | Sample_scan_protocol | standard Affymetrix protocol
| | Sample_data_processing | Data was normalized by robust multichip average using GeneSpring GX (Agilent).
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Kolja,,Eppert
| | Sample_contact_institute | University Health Network
| | Sample_contact_address | 101 College St., rm 8-301
| | Sample_contact_city | Toronto
| | Sample_contact_state | Ontario
| | Sample_contact_zip/postal_code | M5G 1L7
| | Sample_contact_country | Canada
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM753nnn/GSM753670/suppl/GSM753670.CEL.gz
| | Sample_series_id | GSE30375
| | Sample_series_id | GSE30377
| | Sample_data_row_count | 22215
| | |
|
GSM753671 | GPL3921 |
|
5A
|
5-CD34+/CD38-
|
sample #: 5
cell source: AML
leukemia stem cells (lsc): LSC+
sorted fraction: CD34+/CD38-
|
|
| Sample_geo_accession | GSM753671
| | Sample_status | Public on Aug 28 2011
| | Sample_submission_date | Jul 01 2011
| | Sample_last_update_date | Oct 20 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | Standard protocol for primary human tissue
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | TriZol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | RNA was amplified using the Ovation Biotin RNA Amplification and Labeling System (NuGEN, San Carlos, CA). Biotinylated cRNA were prepared according to the standard Affymetrix protocol from Nugen amplified RNA.
| | Sample_hyb_protocol | The cDNA was fragmented, labeled and hybridized to Affymetrix HT_HG-U133A microarrays (Affymetrix, Santa Clara, CA)
| | Sample_scan_protocol | standard Affymetrix protocol
| | Sample_data_processing | Data was normalized by robust multichip average using GeneSpring GX (Agilent).
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Kolja,,Eppert
| | Sample_contact_institute | University Health Network
| | Sample_contact_address | 101 College St., rm 8-301
| | Sample_contact_city | Toronto
| | Sample_contact_state | Ontario
| | Sample_contact_zip/postal_code | M5G 1L7
| | Sample_contact_country | Canada
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM753nnn/GSM753671/suppl/GSM753671.CEL.gz
| | Sample_series_id | GSE30375
| | Sample_series_id | GSE30377
| | Sample_data_row_count | 22215
| | |
|
GSM753672 | GPL3921 |
|
5C
|
5-CD34+/CD38+
|
sample #: 5
cell source: AML
leukemia stem cells (lsc): LSC+
sorted fraction: CD34+/CD38+
|
|
| Sample_geo_accession | GSM753672
| | Sample_status | Public on Aug 28 2011
| | Sample_submission_date | Jul 01 2011
| | Sample_last_update_date | Oct 20 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | Standard protocol for primary human tissue
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | TriZol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | RNA was amplified using the Ovation Biotin RNA Amplification and Labeling System (NuGEN, San Carlos, CA). Biotinylated cRNA were prepared according to the standard Affymetrix protocol from Nugen amplified RNA.
| | Sample_hyb_protocol | The cDNA was fragmented, labeled and hybridized to Affymetrix HT_HG-U133A microarrays (Affymetrix, Santa Clara, CA)
| | Sample_scan_protocol | standard Affymetrix protocol
| | Sample_data_processing | Data was normalized by robust multichip average using GeneSpring GX (Agilent).
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Kolja,,Eppert
| | Sample_contact_institute | University Health Network
| | Sample_contact_address | 101 College St., rm 8-301
| | Sample_contact_city | Toronto
| | Sample_contact_state | Ontario
| | Sample_contact_zip/postal_code | M5G 1L7
| | Sample_contact_country | Canada
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM753nnn/GSM753672/suppl/GSM753672.CEL.gz
| | Sample_series_id | GSE30375
| | Sample_series_id | GSE30377
| | Sample_data_row_count | 22215
| | |
|
GSM753673 | GPL3921 |
|
5E
|
5-CD34-/CD38+
|
sample #: 5
cell source: AML
leukemia stem cells (lsc): LSC-
sorted fraction: CD34-/CD38+
|
|
| Sample_geo_accession | GSM753673
| | Sample_status | Public on Aug 28 2011
| | Sample_submission_date | Jul 01 2011
| | Sample_last_update_date | Oct 20 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | Standard protocol for primary human tissue
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | TriZol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | RNA was amplified using the Ovation Biotin RNA Amplification and Labeling System (NuGEN, San Carlos, CA). Biotinylated cRNA were prepared according to the standard Affymetrix protocol from Nugen amplified RNA.
| | Sample_hyb_protocol | The cDNA was fragmented, labeled and hybridized to Affymetrix HT_HG-U133A microarrays (Affymetrix, Santa Clara, CA)
| | Sample_scan_protocol | standard Affymetrix protocol
| | Sample_data_processing | Data was normalized by robust multichip average using GeneSpring GX (Agilent).
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Kolja,,Eppert
| | Sample_contact_institute | University Health Network
| | Sample_contact_address | 101 College St., rm 8-301
| | Sample_contact_city | Toronto
| | Sample_contact_state | Ontario
| | Sample_contact_zip/postal_code | M5G 1L7
| | Sample_contact_country | Canada
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM753nnn/GSM753673/suppl/GSM753673.CEL.gz
| | Sample_series_id | GSE30375
| | Sample_series_id | GSE30377
| | Sample_data_row_count | 22215
| | |
|
GSM753674 | GPL3921 |
|
5G
|
5-CD34-/CD38-
|
sample #: 5
cell source: AML
leukemia stem cells (lsc): LSC-
sorted fraction: CD34-/CD38-
|
|
| Sample_geo_accession | GSM753674
| | Sample_status | Public on Aug 28 2011
| | Sample_submission_date | Jul 01 2011
| | Sample_last_update_date | Oct 20 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | Standard protocol for primary human tissue
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | TriZol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | RNA was amplified using the Ovation Biotin RNA Amplification and Labeling System (NuGEN, San Carlos, CA). Biotinylated cRNA were prepared according to the standard Affymetrix protocol from Nugen amplified RNA.
| | Sample_hyb_protocol | The cDNA was fragmented, labeled and hybridized to Affymetrix HT_HG-U133A microarrays (Affymetrix, Santa Clara, CA)
| | Sample_scan_protocol | standard Affymetrix protocol
| | Sample_data_processing | Data was normalized by robust multichip average using GeneSpring GX (Agilent).
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Kolja,,Eppert
| | Sample_contact_institute | University Health Network
| | Sample_contact_address | 101 College St., rm 8-301
| | Sample_contact_city | Toronto
| | Sample_contact_state | Ontario
| | Sample_contact_zip/postal_code | M5G 1L7
| | Sample_contact_country | Canada
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM753nnn/GSM753674/suppl/GSM753674.CEL.gz
| | Sample_series_id | GSE30375
| | Sample_series_id | GSE30377
| | Sample_data_row_count | 22215
| | |
|
GSM753675 | GPL3921 |
|
5H
|
5-Unsorted
|
sample #: 5
cell source: AML
leukemia stem cells (lsc): N/A
sorted fraction: Unsorted
|
|
| Sample_geo_accession | GSM753675
| | Sample_status | Public on Aug 28 2011
| | Sample_submission_date | Jul 01 2011
| | Sample_last_update_date | Oct 20 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | Standard protocol for primary human tissue
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | TriZol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | RNA was amplified using the Ovation Biotin RNA Amplification and Labeling System (NuGEN, San Carlos, CA). Biotinylated cRNA were prepared according to the standard Affymetrix protocol from Nugen amplified RNA.
| | Sample_hyb_protocol | The cDNA was fragmented, labeled and hybridized to Affymetrix HT_HG-U133A microarrays (Affymetrix, Santa Clara, CA)
| | Sample_scan_protocol | standard Affymetrix protocol
| | Sample_data_processing | Data was normalized by robust multichip average using GeneSpring GX (Agilent).
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Kolja,,Eppert
| | Sample_contact_institute | University Health Network
| | Sample_contact_address | 101 College St., rm 8-301
| | Sample_contact_city | Toronto
| | Sample_contact_state | Ontario
| | Sample_contact_zip/postal_code | M5G 1L7
| | Sample_contact_country | Canada
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM753nnn/GSM753675/suppl/GSM753675.CEL.gz
| | Sample_series_id | GSE30375
| | Sample_series_id | GSE30377
| | Sample_data_row_count | 22215
| | |
|
GSM753676 | GPL3921 |
|
6A
|
6-CD34+/CD38-
|
sample #: 6
cell source: AML
leukemia stem cells (lsc): LSC+
sorted fraction: CD34+/CD38-
|
|
| Sample_geo_accession | GSM753676
| | Sample_status | Public on Aug 28 2011
| | Sample_submission_date | Jul 01 2011
| | Sample_last_update_date | Oct 20 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | Standard protocol for primary human tissue
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | TriZol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | RNA was amplified using the Ovation Biotin RNA Amplification and Labeling System (NuGEN, San Carlos, CA). Biotinylated cRNA were prepared according to the standard Affymetrix protocol from Nugen amplified RNA.
| | Sample_hyb_protocol | The cDNA was fragmented, labeled and hybridized to Affymetrix HT_HG-U133A microarrays (Affymetrix, Santa Clara, CA)
| | Sample_scan_protocol | standard Affymetrix protocol
| | Sample_data_processing | Data was normalized by robust multichip average using GeneSpring GX (Agilent).
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Kolja,,Eppert
| | Sample_contact_institute | University Health Network
| | Sample_contact_address | 101 College St., rm 8-301
| | Sample_contact_city | Toronto
| | Sample_contact_state | Ontario
| | Sample_contact_zip/postal_code | M5G 1L7
| | Sample_contact_country | Canada
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM753nnn/GSM753676/suppl/GSM753676.CEL.gz
| | Sample_series_id | GSE30375
| | Sample_series_id | GSE30377
| | Sample_data_row_count | 22215
| | |
|
GSM753677 | GPL3921 |
|
6C
|
6-CD34+/CD38+
|
sample #: 6
cell source: AML
leukemia stem cells (lsc): LSC+
sorted fraction: CD34+/CD38+
|
|
| Sample_geo_accession | GSM753677
| | Sample_status | Public on Aug 28 2011
| | Sample_submission_date | Jul 01 2011
| | Sample_last_update_date | Oct 20 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | Standard protocol for primary human tissue
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | TriZol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | RNA was amplified using the Ovation Biotin RNA Amplification and Labeling System (NuGEN, San Carlos, CA). Biotinylated cRNA were prepared according to the standard Affymetrix protocol from Nugen amplified RNA.
| | Sample_hyb_protocol | The cDNA was fragmented, labeled and hybridized to Affymetrix HT_HG-U133A microarrays (Affymetrix, Santa Clara, CA)
| | Sample_scan_protocol | standard Affymetrix protocol
| | Sample_data_processing | Data was normalized by robust multichip average using GeneSpring GX (Agilent).
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Kolja,,Eppert
| | Sample_contact_institute | University Health Network
| | Sample_contact_address | 101 College St., rm 8-301
| | Sample_contact_city | Toronto
| | Sample_contact_state | Ontario
| | Sample_contact_zip/postal_code | M5G 1L7
| | Sample_contact_country | Canada
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM753nnn/GSM753677/suppl/GSM753677.CEL.gz
| | Sample_series_id | GSE30375
| | Sample_series_id | GSE30377
| | Sample_data_row_count | 22215
| | |
|
GSM753678 | GPL3921 |
|
6E
|
6-CD34-/CD38+
|
sample #: 6
cell source: AML
leukemia stem cells (lsc): LSC-
sorted fraction: CD34-/CD38+
|
|
| Sample_geo_accession | GSM753678
| | Sample_status | Public on Aug 28 2011
| | Sample_submission_date | Jul 01 2011
| | Sample_last_update_date | Oct 20 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | Standard protocol for primary human tissue
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | TriZol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | RNA was amplified using the Ovation Biotin RNA Amplification and Labeling System (NuGEN, San Carlos, CA). Biotinylated cRNA were prepared according to the standard Affymetrix protocol from Nugen amplified RNA.
| | Sample_hyb_protocol | The cDNA was fragmented, labeled and hybridized to Affymetrix HT_HG-U133A microarrays (Affymetrix, Santa Clara, CA)
| | Sample_scan_protocol | standard Affymetrix protocol
| | Sample_data_processing | Data was normalized by robust multichip average using GeneSpring GX (Agilent).
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Kolja,,Eppert
| | Sample_contact_institute | University Health Network
| | Sample_contact_address | 101 College St., rm 8-301
| | Sample_contact_city | Toronto
| | Sample_contact_state | Ontario
| | Sample_contact_zip/postal_code | M5G 1L7
| | Sample_contact_country | Canada
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM753nnn/GSM753678/suppl/GSM753678.CEL.gz
| | Sample_series_id | GSE30375
| | Sample_series_id | GSE30377
| | Sample_data_row_count | 22215
| | |
|
GSM753679 | GPL3921 |
|
6G
|
6-CD34-/CD38-
|
sample #: 6
cell source: AML
leukemia stem cells (lsc): LSC-
sorted fraction: CD34-/CD38-
|
|
| Sample_geo_accession | GSM753679
| | Sample_status | Public on Aug 28 2011
| | Sample_submission_date | Jul 01 2011
| | Sample_last_update_date | Oct 20 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | Standard protocol for primary human tissue
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | TriZol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | RNA was amplified using the Ovation Biotin RNA Amplification and Labeling System (NuGEN, San Carlos, CA). Biotinylated cRNA were prepared according to the standard Affymetrix protocol from Nugen amplified RNA.
| | Sample_hyb_protocol | The cDNA was fragmented, labeled and hybridized to Affymetrix HT_HG-U133A microarrays (Affymetrix, Santa Clara, CA)
| | Sample_scan_protocol | standard Affymetrix protocol
| | Sample_data_processing | Data was normalized by robust multichip average using GeneSpring GX (Agilent).
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Kolja,,Eppert
| | Sample_contact_institute | University Health Network
| | Sample_contact_address | 101 College St., rm 8-301
| | Sample_contact_city | Toronto
| | Sample_contact_state | Ontario
| | Sample_contact_zip/postal_code | M5G 1L7
| | Sample_contact_country | Canada
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM753nnn/GSM753679/suppl/GSM753679.CEL.gz
| | Sample_series_id | GSE30375
| | Sample_series_id | GSE30377
| | Sample_data_row_count | 22215
| | |
|
GSM753680 | GPL3921 |
|
6H
|
6-Unsorted
|
sample #: 6
cell source: AML
leukemia stem cells (lsc): N/A
sorted fraction: Unsorted
|
|
| Sample_geo_accession | GSM753680
| | Sample_status | Public on Aug 28 2011
| | Sample_submission_date | Jul 01 2011
| | Sample_last_update_date | Oct 20 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | Standard protocol for primary human tissue
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | TriZol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | RNA was amplified using the Ovation Biotin RNA Amplification and Labeling System (NuGEN, San Carlos, CA). Biotinylated cRNA were prepared according to the standard Affymetrix protocol from Nugen amplified RNA.
| | Sample_hyb_protocol | The cDNA was fragmented, labeled and hybridized to Affymetrix HT_HG-U133A microarrays (Affymetrix, Santa Clara, CA)
| | Sample_scan_protocol | standard Affymetrix protocol
| | Sample_data_processing | Data was normalized by robust multichip average using GeneSpring GX (Agilent).
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Kolja,,Eppert
| | Sample_contact_institute | University Health Network
| | Sample_contact_address | 101 College St., rm 8-301
| | Sample_contact_city | Toronto
| | Sample_contact_state | Ontario
| | Sample_contact_zip/postal_code | M5G 1L7
| | Sample_contact_country | Canada
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM753nnn/GSM753680/suppl/GSM753680.CEL.gz
| | Sample_series_id | GSE30375
| | Sample_series_id | GSE30377
| | Sample_data_row_count | 22215
| | |
|
GSM753681 | GPL3921 |
|
7A
|
7-CD34+/CD38-
|
sample #: 7
cell source: AML
leukemia stem cells (lsc): LSC+
sorted fraction: CD34+/CD38-
|
|
| Sample_geo_accession | GSM753681
| | Sample_status | Public on Aug 28 2011
| | Sample_submission_date | Jul 01 2011
| | Sample_last_update_date | Oct 20 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | Standard protocol for primary human tissue
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | TriZol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | RNA was amplified using the Ovation Biotin RNA Amplification and Labeling System (NuGEN, San Carlos, CA). Biotinylated cRNA were prepared according to the standard Affymetrix protocol from Nugen amplified RNA.
| | Sample_hyb_protocol | The cDNA was fragmented, labeled and hybridized to Affymetrix HT_HG-U133A microarrays (Affymetrix, Santa Clara, CA)
| | Sample_scan_protocol | standard Affymetrix protocol
| | Sample_data_processing | Data was normalized by robust multichip average using GeneSpring GX (Agilent).
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Kolja,,Eppert
| | Sample_contact_institute | University Health Network
| | Sample_contact_address | 101 College St., rm 8-301
| | Sample_contact_city | Toronto
| | Sample_contact_state | Ontario
| | Sample_contact_zip/postal_code | M5G 1L7
| | Sample_contact_country | Canada
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM753nnn/GSM753681/suppl/GSM753681.CEL.gz
| | Sample_series_id | GSE30375
| | Sample_series_id | GSE30377
| | Sample_data_row_count | 22215
| | |
|
GSM753682 | GPL3921 |
|
7C
|
7-CD34+/CD38+
|
sample #: 7
cell source: AML
leukemia stem cells (lsc): N/A
sorted fraction: CD34+/CD38+
|
|
| Sample_geo_accession | GSM753682
| | Sample_status | Public on Aug 28 2011
| | Sample_submission_date | Jul 01 2011
| | Sample_last_update_date | Oct 20 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | Standard protocol for primary human tissue
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | TriZol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | RNA was amplified using the Ovation Biotin RNA Amplification and Labeling System (NuGEN, San Carlos, CA). Biotinylated cRNA were prepared according to the standard Affymetrix protocol from Nugen amplified RNA.
| | Sample_hyb_protocol | The cDNA was fragmented, labeled and hybridized to Affymetrix HT_HG-U133A microarrays (Affymetrix, Santa Clara, CA)
| | Sample_scan_protocol | standard Affymetrix protocol
| | Sample_data_processing | Data was normalized by robust multichip average using GeneSpring GX (Agilent).
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Kolja,,Eppert
| | Sample_contact_institute | University Health Network
| | Sample_contact_address | 101 College St., rm 8-301
| | Sample_contact_city | Toronto
| | Sample_contact_state | Ontario
| | Sample_contact_zip/postal_code | M5G 1L7
| | Sample_contact_country | Canada
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM753nnn/GSM753682/suppl/GSM753682.CEL.gz
| | Sample_series_id | GSE30375
| | Sample_series_id | GSE30377
| | Sample_data_row_count | 22215
| | |
|
GSM753683 | GPL3921 |
|
7E
|
7-CD34-/CD38+
|
sample #: 7
cell source: AML
leukemia stem cells (lsc): N/A
sorted fraction: CD34-/CD38+
|
|
| Sample_geo_accession | GSM753683
| | Sample_status | Public on Aug 28 2011
| | Sample_submission_date | Jul 01 2011
| | Sample_last_update_date | Oct 20 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | Standard protocol for primary human tissue
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | TriZol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | RNA was amplified using the Ovation Biotin RNA Amplification and Labeling System (NuGEN, San Carlos, CA). Biotinylated cRNA were prepared according to the standard Affymetrix protocol from Nugen amplified RNA.
| | Sample_hyb_protocol | The cDNA was fragmented, labeled and hybridized to Affymetrix HT_HG-U133A microarrays (Affymetrix, Santa Clara, CA)
| | Sample_scan_protocol | standard Affymetrix protocol
| | Sample_data_processing | Data was normalized by robust multichip average using GeneSpring GX (Agilent).
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Kolja,,Eppert
| | Sample_contact_institute | University Health Network
| | Sample_contact_address | 101 College St., rm 8-301
| | Sample_contact_city | Toronto
| | Sample_contact_state | Ontario
| | Sample_contact_zip/postal_code | M5G 1L7
| | Sample_contact_country | Canada
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM753nnn/GSM753683/suppl/GSM753683.CEL.gz
| | Sample_series_id | GSE30375
| | Sample_series_id | GSE30377
| | Sample_data_row_count | 22215
| | |
|
GSM753684 | GPL3921 |
|
7G
|
7-CD34-/CD38-
|
sample #: 7
cell source: AML
leukemia stem cells (lsc): LSC+
sorted fraction: CD34-/CD38-
|
|
| Sample_geo_accession | GSM753684
| | Sample_status | Public on Aug 28 2011
| | Sample_submission_date | Jul 01 2011
| | Sample_last_update_date | Oct 20 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | Standard protocol for primary human tissue
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | TriZol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | RNA was amplified using the Ovation Biotin RNA Amplification and Labeling System (NuGEN, San Carlos, CA). Biotinylated cRNA were prepared according to the standard Affymetrix protocol from Nugen amplified RNA.
| | Sample_hyb_protocol | The cDNA was fragmented, labeled and hybridized to Affymetrix HT_HG-U133A microarrays (Affymetrix, Santa Clara, CA)
| | Sample_scan_protocol | standard Affymetrix protocol
| | Sample_data_processing | Data was normalized by robust multichip average using GeneSpring GX (Agilent).
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Kolja,,Eppert
| | Sample_contact_institute | University Health Network
| | Sample_contact_address | 101 College St., rm 8-301
| | Sample_contact_city | Toronto
| | Sample_contact_state | Ontario
| | Sample_contact_zip/postal_code | M5G 1L7
| | Sample_contact_country | Canada
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM753nnn/GSM753684/suppl/GSM753684.CEL.gz
| | Sample_series_id | GSE30375
| | Sample_series_id | GSE30377
| | Sample_data_row_count | 22215
| | |
|
GSM753685 | GPL3921 |
|
8A
|
8-CD34+/CD38-
|
sample #: 8
cell source: AML
leukemia stem cells (lsc): LSC+
sorted fraction: CD34+/CD38-
|
|
| Sample_geo_accession | GSM753685
| | Sample_status | Public on Aug 28 2011
| | Sample_submission_date | Jul 01 2011
| | Sample_last_update_date | Oct 20 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | Standard protocol for primary human tissue
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | TriZol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | RNA was amplified using the Ovation Biotin RNA Amplification and Labeling System (NuGEN, San Carlos, CA). Biotinylated cRNA were prepared according to the standard Affymetrix protocol from Nugen amplified RNA.
| | Sample_hyb_protocol | The cDNA was fragmented, labeled and hybridized to Affymetrix HT_HG-U133A microarrays (Affymetrix, Santa Clara, CA)
| | Sample_scan_protocol | standard Affymetrix protocol
| | Sample_data_processing | Data was normalized by robust multichip average using GeneSpring GX (Agilent).
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Kolja,,Eppert
| | Sample_contact_institute | University Health Network
| | Sample_contact_address | 101 College St., rm 8-301
| | Sample_contact_city | Toronto
| | Sample_contact_state | Ontario
| | Sample_contact_zip/postal_code | M5G 1L7
| | Sample_contact_country | Canada
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM753nnn/GSM753685/suppl/GSM753685.CEL.gz
| | Sample_series_id | GSE30375
| | Sample_series_id | GSE30377
| | Sample_data_row_count | 22215
| | |
|
GSM753686 | GPL3921 |
|
8C
|
8-CD34+/CD38+
|
sample #: 8
cell source: AML
leukemia stem cells (lsc): LSC-
sorted fraction: CD34+/CD38+
|
|
| Sample_geo_accession | GSM753686
| | Sample_status | Public on Aug 28 2011
| | Sample_submission_date | Jul 01 2011
| | Sample_last_update_date | Oct 20 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | Standard protocol for primary human tissue
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | TriZol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | RNA was amplified using the Ovation Biotin RNA Amplification and Labeling System (NuGEN, San Carlos, CA). Biotinylated cRNA were prepared according to the standard Affymetrix protocol from Nugen amplified RNA.
| | Sample_hyb_protocol | The cDNA was fragmented, labeled and hybridized to Affymetrix HT_HG-U133A microarrays (Affymetrix, Santa Clara, CA)
| | Sample_scan_protocol | standard Affymetrix protocol
| | Sample_data_processing | Data was normalized by robust multichip average using GeneSpring GX (Agilent).
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Kolja,,Eppert
| | Sample_contact_institute | University Health Network
| | Sample_contact_address | 101 College St., rm 8-301
| | Sample_contact_city | Toronto
| | Sample_contact_state | Ontario
| | Sample_contact_zip/postal_code | M5G 1L7
| | Sample_contact_country | Canada
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM753nnn/GSM753686/suppl/GSM753686.CEL.gz
| | Sample_series_id | GSE30375
| | Sample_series_id | GSE30377
| | Sample_data_row_count | 22215
| | |
|
GSM753687 | GPL3921 |
|
8E
|
8-CD34-/CD38+
|
sample #: 8
cell source: AML
leukemia stem cells (lsc): LSC-
sorted fraction: CD34-/CD38+
|
|
| Sample_geo_accession | GSM753687
| | Sample_status | Public on Aug 28 2011
| | Sample_submission_date | Jul 01 2011
| | Sample_last_update_date | Oct 20 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | Standard protocol for primary human tissue
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | TriZol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | RNA was amplified using the Ovation Biotin RNA Amplification and Labeling System (NuGEN, San Carlos, CA). Biotinylated cRNA were prepared according to the standard Affymetrix protocol from Nugen amplified RNA.
| | Sample_hyb_protocol | The cDNA was fragmented, labeled and hybridized to Affymetrix HT_HG-U133A microarrays (Affymetrix, Santa Clara, CA)
| | Sample_scan_protocol | standard Affymetrix protocol
| | Sample_data_processing | Data was normalized by robust multichip average using GeneSpring GX (Agilent).
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Kolja,,Eppert
| | Sample_contact_institute | University Health Network
| | Sample_contact_address | 101 College St., rm 8-301
| | Sample_contact_city | Toronto
| | Sample_contact_state | Ontario
| | Sample_contact_zip/postal_code | M5G 1L7
| | Sample_contact_country | Canada
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM753nnn/GSM753687/suppl/GSM753687.CEL.gz
| | Sample_series_id | GSE30375
| | Sample_series_id | GSE30377
| | Sample_data_row_count | 22215
| | |
|
GSM753688 | GPL3921 |
|
8G
|
8-CD34-/CD38-
|
sample #: 8
cell source: AML
leukemia stem cells (lsc): LSC-
sorted fraction: CD34-/CD38-
|
|
| Sample_geo_accession | GSM753688
| | Sample_status | Public on Aug 28 2011
| | Sample_submission_date | Jul 01 2011
| | Sample_last_update_date | Oct 20 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | Standard protocol for primary human tissue
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | TriZol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | RNA was amplified using the Ovation Biotin RNA Amplification and Labeling System (NuGEN, San Carlos, CA). Biotinylated cRNA were prepared according to the standard Affymetrix protocol from Nugen amplified RNA.
| | Sample_hyb_protocol | The cDNA was fragmented, labeled and hybridized to Affymetrix HT_HG-U133A microarrays (Affymetrix, Santa Clara, CA)
| | Sample_scan_protocol | standard Affymetrix protocol
| | Sample_data_processing | Data was normalized by robust multichip average using GeneSpring GX (Agilent).
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Kolja,,Eppert
| | Sample_contact_institute | University Health Network
| | Sample_contact_address | 101 College St., rm 8-301
| | Sample_contact_city | Toronto
| | Sample_contact_state | Ontario
| | Sample_contact_zip/postal_code | M5G 1L7
| | Sample_contact_country | Canada
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM753nnn/GSM753688/suppl/GSM753688.CEL.gz
| | Sample_series_id | GSE30375
| | Sample_series_id | GSE30377
| | Sample_data_row_count | 22215
| | |
|
GSM753689 | GPL3921 |
|
8H
|
8-Unsorted
|
sample #: 8
cell source: AML
leukemia stem cells (lsc): N/A
sorted fraction: Unsorted
|
|
| Sample_geo_accession | GSM753689
| | Sample_status | Public on Aug 28 2011
| | Sample_submission_date | Jul 01 2011
| | Sample_last_update_date | Oct 20 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | Standard protocol for primary human tissue
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | TriZol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | RNA was amplified using the Ovation Biotin RNA Amplification and Labeling System (NuGEN, San Carlos, CA). Biotinylated cRNA were prepared according to the standard Affymetrix protocol from Nugen amplified RNA.
| | Sample_hyb_protocol | The cDNA was fragmented, labeled and hybridized to Affymetrix HT_HG-U133A microarrays (Affymetrix, Santa Clara, CA)
| | Sample_scan_protocol | standard Affymetrix protocol
| | Sample_data_processing | Data was normalized by robust multichip average using GeneSpring GX (Agilent).
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Kolja,,Eppert
| | Sample_contact_institute | University Health Network
| | Sample_contact_address | 101 College St., rm 8-301
| | Sample_contact_city | Toronto
| | Sample_contact_state | Ontario
| | Sample_contact_zip/postal_code | M5G 1L7
| | Sample_contact_country | Canada
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM753nnn/GSM753689/suppl/GSM753689.CEL.gz
| | Sample_series_id | GSE30375
| | Sample_series_id | GSE30377
| | Sample_data_row_count | 22215
| | |
|
GSM753690 | GPL3921 |
|
9A
|
9-CD34+/CD38-
|
sample #: 9
cell source: AML
leukemia stem cells (lsc): LSC+
sorted fraction: CD34+/CD38-
|
|
| Sample_geo_accession | GSM753690
| | Sample_status | Public on Aug 28 2011
| | Sample_submission_date | Jul 01 2011
| | Sample_last_update_date | Oct 20 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | Standard protocol for primary human tissue
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | TriZol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | RNA was amplified using the Ovation Biotin RNA Amplification and Labeling System (NuGEN, San Carlos, CA). Biotinylated cRNA were prepared according to the standard Affymetrix protocol from Nugen amplified RNA.
| | Sample_hyb_protocol | The cDNA was fragmented, labeled and hybridized to Affymetrix HT_HG-U133A microarrays (Affymetrix, Santa Clara, CA)
| | Sample_scan_protocol | standard Affymetrix protocol
| | Sample_data_processing | Data was normalized by robust multichip average using GeneSpring GX (Agilent).
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Kolja,,Eppert
| | Sample_contact_institute | University Health Network
| | Sample_contact_address | 101 College St., rm 8-301
| | Sample_contact_city | Toronto
| | Sample_contact_state | Ontario
| | Sample_contact_zip/postal_code | M5G 1L7
| | Sample_contact_country | Canada
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM753nnn/GSM753690/suppl/GSM753690.CEL.gz
| | Sample_series_id | GSE30375
| | Sample_series_id | GSE30377
| | Sample_data_row_count | 22215
| | |
|
GSM753691 | GPL3921 |
|
9C
|
9-CD34+/CD38+
|
sample #: 9
cell source: AML
leukemia stem cells (lsc): N/A
sorted fraction: CD34+/CD38+
|
|
| Sample_geo_accession | GSM753691
| | Sample_status | Public on Aug 28 2011
| | Sample_submission_date | Jul 01 2011
| | Sample_last_update_date | Oct 20 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | Standard protocol for primary human tissue
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | TriZol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | RNA was amplified using the Ovation Biotin RNA Amplification and Labeling System (NuGEN, San Carlos, CA). Biotinylated cRNA were prepared according to the standard Affymetrix protocol from Nugen amplified RNA.
| | Sample_hyb_protocol | The cDNA was fragmented, labeled and hybridized to Affymetrix HT_HG-U133A microarrays (Affymetrix, Santa Clara, CA)
| | Sample_scan_protocol | standard Affymetrix protocol
| | Sample_data_processing | Data was normalized by robust multichip average using GeneSpring GX (Agilent).
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Kolja,,Eppert
| | Sample_contact_institute | University Health Network
| | Sample_contact_address | 101 College St., rm 8-301
| | Sample_contact_city | Toronto
| | Sample_contact_state | Ontario
| | Sample_contact_zip/postal_code | M5G 1L7
| | Sample_contact_country | Canada
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM753nnn/GSM753691/suppl/GSM753691.CEL.gz
| | Sample_series_id | GSE30375
| | Sample_series_id | GSE30377
| | Sample_data_row_count | 22215
| | |
|
GSM753692 | GPL3921 |
|
9E
|
9-CD34-/CD38+
|
sample #: 9
cell source: AML
leukemia stem cells (lsc): N/A
sorted fraction: CD34-/CD38+
|
|
| Sample_geo_accession | GSM753692
| | Sample_status | Public on Aug 28 2011
| | Sample_submission_date | Jul 01 2011
| | Sample_last_update_date | Oct 20 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | Standard protocol for primary human tissue
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | TriZol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | RNA was amplified using the Ovation Biotin RNA Amplification and Labeling System (NuGEN, San Carlos, CA). Biotinylated cRNA were prepared according to the standard Affymetrix protocol from Nugen amplified RNA.
| | Sample_hyb_protocol | The cDNA was fragmented, labeled and hybridized to Affymetrix HT_HG-U133A microarrays (Affymetrix, Santa Clara, CA)
| | Sample_scan_protocol | standard Affymetrix protocol
| | Sample_data_processing | Data was normalized by robust multichip average using GeneSpring GX (Agilent).
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Kolja,,Eppert
| | Sample_contact_institute | University Health Network
| | Sample_contact_address | 101 College St., rm 8-301
| | Sample_contact_city | Toronto
| | Sample_contact_state | Ontario
| | Sample_contact_zip/postal_code | M5G 1L7
| | Sample_contact_country | Canada
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM753nnn/GSM753692/suppl/GSM753692.CEL.gz
| | Sample_series_id | GSE30375
| | Sample_series_id | GSE30377
| | Sample_data_row_count | 22215
| | |
|
GSM753693 | GPL3921 |
|
9G
|
9-CD34-/CD38-
|
sample #: 9
cell source: AML
leukemia stem cells (lsc): N/A
sorted fraction: CD34-/CD38-
|
|
| Sample_geo_accession | GSM753693
| | Sample_status | Public on Aug 28 2011
| | Sample_submission_date | Jul 01 2011
| | Sample_last_update_date | Oct 20 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | Standard protocol for primary human tissue
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | TriZol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | RNA was amplified using the Ovation Biotin RNA Amplification and Labeling System (NuGEN, San Carlos, CA). Biotinylated cRNA were prepared according to the standard Affymetrix protocol from Nugen amplified RNA.
| | Sample_hyb_protocol | The cDNA was fragmented, labeled and hybridized to Affymetrix HT_HG-U133A microarrays (Affymetrix, Santa Clara, CA)
| | Sample_scan_protocol | standard Affymetrix protocol
| | Sample_data_processing | Data was normalized by robust multichip average using GeneSpring GX (Agilent).
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Kolja,,Eppert
| | Sample_contact_institute | University Health Network
| | Sample_contact_address | 101 College St., rm 8-301
| | Sample_contact_city | Toronto
| | Sample_contact_state | Ontario
| | Sample_contact_zip/postal_code | M5G 1L7
| | Sample_contact_country | Canada
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM753nnn/GSM753693/suppl/GSM753693.CEL.gz
| | Sample_series_id | GSE30375
| | Sample_series_id | GSE30377
| | Sample_data_row_count | 22215
| | |
|
GSM753694 | GPL3921 |
|
9H
|
9-Unsorted
|
sample #: 9
cell source: AML
leukemia stem cells (lsc): N/A
sorted fraction: Unsorted
|
|
| Sample_geo_accession | GSM753694
| | Sample_status | Public on Aug 28 2011
| | Sample_submission_date | Jul 01 2011
| | Sample_last_update_date | Oct 20 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | Standard protocol for primary human tissue
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | TriZol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | RNA was amplified using the Ovation Biotin RNA Amplification and Labeling System (NuGEN, San Carlos, CA). Biotinylated cRNA were prepared according to the standard Affymetrix protocol from Nugen amplified RNA.
| | Sample_hyb_protocol | The cDNA was fragmented, labeled and hybridized to Affymetrix HT_HG-U133A microarrays (Affymetrix, Santa Clara, CA)
| | Sample_scan_protocol | standard Affymetrix protocol
| | Sample_data_processing | Data was normalized by robust multichip average using GeneSpring GX (Agilent).
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Kolja,,Eppert
| | Sample_contact_institute | University Health Network
| | Sample_contact_address | 101 College St., rm 8-301
| | Sample_contact_city | Toronto
| | Sample_contact_state | Ontario
| | Sample_contact_zip/postal_code | M5G 1L7
| | Sample_contact_country | Canada
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM753nnn/GSM753694/suppl/GSM753694.CEL.gz
| | Sample_series_id | GSE30375
| | Sample_series_id | GSE30377
| | Sample_data_row_count | 22215
| | |
|
GSM753695 | GPL3921 |
|
10A
|
10-CD34+/CD38-
|
sample #: 10
cell source: AML
leukemia stem cells (lsc): LSC+
sorted fraction: CD34+/CD38-
|
|
| Sample_geo_accession | GSM753695
| | Sample_status | Public on Aug 28 2011
| | Sample_submission_date | Jul 01 2011
| | Sample_last_update_date | Oct 20 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | Standard protocol for primary human tissue
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | TriZol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | RNA was amplified using the Ovation Biotin RNA Amplification and Labeling System (NuGEN, San Carlos, CA). Biotinylated cRNA were prepared according to the standard Affymetrix protocol from Nugen amplified RNA.
| | Sample_hyb_protocol | The cDNA was fragmented, labeled and hybridized to Affymetrix HT_HG-U133A microarrays (Affymetrix, Santa Clara, CA)
| | Sample_scan_protocol | standard Affymetrix protocol
| | Sample_data_processing | Data was normalized by robust multichip average using GeneSpring GX (Agilent).
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Kolja,,Eppert
| | Sample_contact_institute | University Health Network
| | Sample_contact_address | 101 College St., rm 8-301
| | Sample_contact_city | Toronto
| | Sample_contact_state | Ontario
| | Sample_contact_zip/postal_code | M5G 1L7
| | Sample_contact_country | Canada
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM753nnn/GSM753695/suppl/GSM753695.CEL.gz
| | Sample_series_id | GSE30375
| | Sample_series_id | GSE30377
| | Sample_data_row_count | 22215
| | |
|
GSM753696 | GPL3921 |
|
10C
|
10-CD34+/CD38+
|
sample #: 10
cell source: AML
leukemia stem cells (lsc): N/A
sorted fraction: CD34+/CD38+
|
|
| Sample_geo_accession | GSM753696
| | Sample_status | Public on Aug 28 2011
| | Sample_submission_date | Jul 01 2011
| | Sample_last_update_date | Oct 20 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | Standard protocol for primary human tissue
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | TriZol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | RNA was amplified using the Ovation Biotin RNA Amplification and Labeling System (NuGEN, San Carlos, CA). Biotinylated cRNA were prepared according to the standard Affymetrix protocol from Nugen amplified RNA.
| | Sample_hyb_protocol | The cDNA was fragmented, labeled and hybridized to Affymetrix HT_HG-U133A microarrays (Affymetrix, Santa Clara, CA)
| | Sample_scan_protocol | standard Affymetrix protocol
| | Sample_data_processing | Data was normalized by robust multichip average using GeneSpring GX (Agilent).
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Kolja,,Eppert
| | Sample_contact_institute | University Health Network
| | Sample_contact_address | 101 College St., rm 8-301
| | Sample_contact_city | Toronto
| | Sample_contact_state | Ontario
| | Sample_contact_zip/postal_code | M5G 1L7
| | Sample_contact_country | Canada
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM753nnn/GSM753696/suppl/GSM753696.CEL.gz
| | Sample_series_id | GSE30375
| | Sample_series_id | GSE30377
| | Sample_data_row_count | 22215
| | |
|
GSM753697 | GPL3921 |
|
10E
|
10-CD34-/CD38+
|
sample #: 10
cell source: AML
leukemia stem cells (lsc): N/A
sorted fraction: CD34-/CD38+
|
|
| Sample_geo_accession | GSM753697
| | Sample_status | Public on Aug 28 2011
| | Sample_submission_date | Jul 01 2011
| | Sample_last_update_date | Oct 20 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | Standard protocol for primary human tissue
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | TriZol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | RNA was amplified using the Ovation Biotin RNA Amplification and Labeling System (NuGEN, San Carlos, CA). Biotinylated cRNA were prepared according to the standard Affymetrix protocol from Nugen amplified RNA.
| | Sample_hyb_protocol | The cDNA was fragmented, labeled and hybridized to Affymetrix HT_HG-U133A microarrays (Affymetrix, Santa Clara, CA)
| | Sample_scan_protocol | standard Affymetrix protocol
| | Sample_data_processing | Data was normalized by robust multichip average using GeneSpring GX (Agilent).
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Kolja,,Eppert
| | Sample_contact_institute | University Health Network
| | Sample_contact_address | 101 College St., rm 8-301
| | Sample_contact_city | Toronto
| | Sample_contact_state | Ontario
| | Sample_contact_zip/postal_code | M5G 1L7
| | Sample_contact_country | Canada
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM753nnn/GSM753697/suppl/GSM753697.CEL.gz
| | Sample_series_id | GSE30375
| | Sample_series_id | GSE30377
| | Sample_data_row_count | 22215
| | |
|
GSM753698 | GPL3921 |
|
10G
|
10-CD34-/CD38-
|
sample #: 10
cell source: AML
leukemia stem cells (lsc): N/A
sorted fraction: CD34-/CD38-
|
|
| Sample_geo_accession | GSM753698
| | Sample_status | Public on Aug 28 2011
| | Sample_submission_date | Jul 01 2011
| | Sample_last_update_date | Oct 20 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | Standard protocol for primary human tissue
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | TriZol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | RNA was amplified using the Ovation Biotin RNA Amplification and Labeling System (NuGEN, San Carlos, CA). Biotinylated cRNA were prepared according to the standard Affymetrix protocol from Nugen amplified RNA.
| | Sample_hyb_protocol | The cDNA was fragmented, labeled and hybridized to Affymetrix HT_HG-U133A microarrays (Affymetrix, Santa Clara, CA)
| | Sample_scan_protocol | standard Affymetrix protocol
| | Sample_data_processing | Data was normalized by robust multichip average using GeneSpring GX (Agilent).
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Kolja,,Eppert
| | Sample_contact_institute | University Health Network
| | Sample_contact_address | 101 College St., rm 8-301
| | Sample_contact_city | Toronto
| | Sample_contact_state | Ontario
| | Sample_contact_zip/postal_code | M5G 1L7
| | Sample_contact_country | Canada
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM753nnn/GSM753698/suppl/GSM753698.CEL.gz
| | Sample_series_id | GSE30375
| | Sample_series_id | GSE30377
| | Sample_data_row_count | 22215
| | |
|
GSM753699 | GPL3921 |
|
10H
|
10-Unsorted
|
sample #: 10
cell source: AML
leukemia stem cells (lsc): N/A
sorted fraction: Unsorted
|
|
| Sample_geo_accession | GSM753699
| | Sample_status | Public on Aug 28 2011
| | Sample_submission_date | Jul 01 2011
| | Sample_last_update_date | Oct 20 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | Standard protocol for primary human tissue
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | TriZol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | RNA was amplified using the Ovation Biotin RNA Amplification and Labeling System (NuGEN, San Carlos, CA). Biotinylated cRNA were prepared according to the standard Affymetrix protocol from Nugen amplified RNA.
| | Sample_hyb_protocol | The cDNA was fragmented, labeled and hybridized to Affymetrix HT_HG-U133A microarrays (Affymetrix, Santa Clara, CA)
| | Sample_scan_protocol | standard Affymetrix protocol
| | Sample_data_processing | Data was normalized by robust multichip average using GeneSpring GX (Agilent).
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Kolja,,Eppert
| | Sample_contact_institute | University Health Network
| | Sample_contact_address | 101 College St., rm 8-301
| | Sample_contact_city | Toronto
| | Sample_contact_state | Ontario
| | Sample_contact_zip/postal_code | M5G 1L7
| | Sample_contact_country | Canada
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM753nnn/GSM753699/suppl/GSM753699.CEL.gz
| | Sample_series_id | GSE30375
| | Sample_series_id | GSE30377
| | Sample_data_row_count | 22215
| | |
|
GSM753700 | GPL3921 |
|
11A
|
11-CD34+/CD38-
|
sample #: 11
cell source: AML
leukemia stem cells (lsc): LSC+
sorted fraction: CD34+/CD38-
|
|
| Sample_geo_accession | GSM753700
| | Sample_status | Public on Aug 28 2011
| | Sample_submission_date | Jul 01 2011
| | Sample_last_update_date | Oct 20 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | Standard protocol for primary human tissue
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | TriZol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | RNA was amplified using the Ovation Biotin RNA Amplification and Labeling System (NuGEN, San Carlos, CA). Biotinylated cRNA were prepared according to the standard Affymetrix protocol from Nugen amplified RNA.
| | Sample_hyb_protocol | The cDNA was fragmented, labeled and hybridized to Affymetrix HT_HG-U133A microarrays (Affymetrix, Santa Clara, CA)
| | Sample_scan_protocol | standard Affymetrix protocol
| | Sample_data_processing | Data was normalized by robust multichip average using GeneSpring GX (Agilent).
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Kolja,,Eppert
| | Sample_contact_institute | University Health Network
| | Sample_contact_address | 101 College St., rm 8-301
| | Sample_contact_city | Toronto
| | Sample_contact_state | Ontario
| | Sample_contact_zip/postal_code | M5G 1L7
| | Sample_contact_country | Canada
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM753nnn/GSM753700/suppl/GSM753700.CEL.gz
| | Sample_series_id | GSE30375
| | Sample_series_id | GSE30377
| | Sample_data_row_count | 22215
| | |
|
GSM753701 | GPL3921 |
|
11C
|
11-CD34+/CD38+
|
sample #: 11
cell source: AML
leukemia stem cells (lsc): LSC+
sorted fraction: CD34+/CD38+
|
|
| Sample_geo_accession | GSM753701
| | Sample_status | Public on Aug 28 2011
| | Sample_submission_date | Jul 01 2011
| | Sample_last_update_date | Oct 20 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | Standard protocol for primary human tissue
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | TriZol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | RNA was amplified using the Ovation Biotin RNA Amplification and Labeling System (NuGEN, San Carlos, CA). Biotinylated cRNA were prepared according to the standard Affymetrix protocol from Nugen amplified RNA.
| | Sample_hyb_protocol | The cDNA was fragmented, labeled and hybridized to Affymetrix HT_HG-U133A microarrays (Affymetrix, Santa Clara, CA)
| | Sample_scan_protocol | standard Affymetrix protocol
| | Sample_data_processing | Data was normalized by robust multichip average using GeneSpring GX (Agilent).
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Kolja,,Eppert
| | Sample_contact_institute | University Health Network
| | Sample_contact_address | 101 College St., rm 8-301
| | Sample_contact_city | Toronto
| | Sample_contact_state | Ontario
| | Sample_contact_zip/postal_code | M5G 1L7
| | Sample_contact_country | Canada
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM753nnn/GSM753701/suppl/GSM753701.CEL.gz
| | Sample_series_id | GSE30375
| | Sample_series_id | GSE30377
| | Sample_data_row_count | 22215
| | |
|
GSM753702 | GPL3921 |
|
11E
|
11-CD34-/CD38+
|
sample #: 11
cell source: AML
leukemia stem cells (lsc): LSC-
sorted fraction: CD34-/CD38+
|
|
| Sample_geo_accession | GSM753702
| | Sample_status | Public on Aug 28 2011
| | Sample_submission_date | Jul 01 2011
| | Sample_last_update_date | Oct 20 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | Standard protocol for primary human tissue
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | TriZol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | RNA was amplified using the Ovation Biotin RNA Amplification and Labeling System (NuGEN, San Carlos, CA). Biotinylated cRNA were prepared according to the standard Affymetrix protocol from Nugen amplified RNA.
| | Sample_hyb_protocol | The cDNA was fragmented, labeled and hybridized to Affymetrix HT_HG-U133A microarrays (Affymetrix, Santa Clara, CA)
| | Sample_scan_protocol | standard Affymetrix protocol
| | Sample_data_processing | Data was normalized by robust multichip average using GeneSpring GX (Agilent).
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Kolja,,Eppert
| | Sample_contact_institute | University Health Network
| | Sample_contact_address | 101 College St., rm 8-301
| | Sample_contact_city | Toronto
| | Sample_contact_state | Ontario
| | Sample_contact_zip/postal_code | M5G 1L7
| | Sample_contact_country | Canada
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM753nnn/GSM753702/suppl/GSM753702.CEL.gz
| | Sample_series_id | GSE30375
| | Sample_series_id | GSE30377
| | Sample_data_row_count | 22215
| | |
|
GSM753703 | GPL3921 |
|
11G
|
11-CD34-/CD38-
|
sample #: 11
cell source: AML
leukemia stem cells (lsc): LSC-
sorted fraction: CD34-/CD38-
|
|
| Sample_geo_accession | GSM753703
| | Sample_status | Public on Aug 28 2011
| | Sample_submission_date | Jul 01 2011
| | Sample_last_update_date | Oct 20 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | Standard protocol for primary human tissue
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | TriZol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | RNA was amplified using the Ovation Biotin RNA Amplification and Labeling System (NuGEN, San Carlos, CA). Biotinylated cRNA were prepared according to the standard Affymetrix protocol from Nugen amplified RNA.
| | Sample_hyb_protocol | The cDNA was fragmented, labeled and hybridized to Affymetrix HT_HG-U133A microarrays (Affymetrix, Santa Clara, CA)
| | Sample_scan_protocol | standard Affymetrix protocol
| | Sample_data_processing | Data was normalized by robust multichip average using GeneSpring GX (Agilent).
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Kolja,,Eppert
| | Sample_contact_institute | University Health Network
| | Sample_contact_address | 101 College St., rm 8-301
| | Sample_contact_city | Toronto
| | Sample_contact_state | Ontario
| | Sample_contact_zip/postal_code | M5G 1L7
| | Sample_contact_country | Canada
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM753nnn/GSM753703/suppl/GSM753703.CEL.gz
| | Sample_series_id | GSE30375
| | Sample_series_id | GSE30377
| | Sample_data_row_count | 22215
| | |
|
GSM753704 | GPL3921 |
|
11H
|
11-Unsorted
|
sample #: 11
cell source: AML
leukemia stem cells (lsc): N/A
sorted fraction: Unsorted
|
|
| Sample_geo_accession | GSM753704
| | Sample_status | Public on Aug 28 2011
| | Sample_submission_date | Jul 01 2011
| | Sample_last_update_date | Oct 20 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | Standard protocol for primary human tissue
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | TriZol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | RNA was amplified using the Ovation Biotin RNA Amplification and Labeling System (NuGEN, San Carlos, CA). Biotinylated cRNA were prepared according to the standard Affymetrix protocol from Nugen amplified RNA.
| | Sample_hyb_protocol | The cDNA was fragmented, labeled and hybridized to Affymetrix HT_HG-U133A microarrays (Affymetrix, Santa Clara, CA)
| | Sample_scan_protocol | standard Affymetrix protocol
| | Sample_data_processing | Data was normalized by robust multichip average using GeneSpring GX (Agilent).
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Kolja,,Eppert
| | Sample_contact_institute | University Health Network
| | Sample_contact_address | 101 College St., rm 8-301
| | Sample_contact_city | Toronto
| | Sample_contact_state | Ontario
| | Sample_contact_zip/postal_code | M5G 1L7
| | Sample_contact_country | Canada
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM753nnn/GSM753704/suppl/GSM753704.CEL.gz
| | Sample_series_id | GSE30375
| | Sample_series_id | GSE30377
| | Sample_data_row_count | 22215
| | |
|
GSM753705 | GPL3921 |
|
12A
|
12-CD34+/CD38-
|
sample #: 12
cell source: AML
leukemia stem cells (lsc): LSC+
sorted fraction: CD34+/CD38-
|
|
| Sample_geo_accession | GSM753705
| | Sample_status | Public on Aug 28 2011
| | Sample_submission_date | Jul 01 2011
| | Sample_last_update_date | Oct 20 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | Standard protocol for primary human tissue
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | TriZol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | RNA was amplified using the Ovation Biotin RNA Amplification and Labeling System (NuGEN, San Carlos, CA). Biotinylated cRNA were prepared according to the standard Affymetrix protocol from Nugen amplified RNA.
| | Sample_hyb_protocol | The cDNA was fragmented, labeled and hybridized to Affymetrix HT_HG-U133A microarrays (Affymetrix, Santa Clara, CA)
| | Sample_scan_protocol | standard Affymetrix protocol
| | Sample_data_processing | Data was normalized by robust multichip average using GeneSpring GX (Agilent).
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Kolja,,Eppert
| | Sample_contact_institute | University Health Network
| | Sample_contact_address | 101 College St., rm 8-301
| | Sample_contact_city | Toronto
| | Sample_contact_state | Ontario
| | Sample_contact_zip/postal_code | M5G 1L7
| | Sample_contact_country | Canada
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM753nnn/GSM753705/suppl/GSM753705.CEL.gz
| | Sample_series_id | GSE30375
| | Sample_series_id | GSE30377
| | Sample_data_row_count | 22215
| | |
|
GSM753706 | GPL3921 |
|
12C
|
12-CD34+/CD38+
|
sample #: 12
cell source: AML
leukemia stem cells (lsc): LSC-
sorted fraction: CD34+/CD38+
|
|
| Sample_geo_accession | GSM753706
| | Sample_status | Public on Aug 28 2011
| | Sample_submission_date | Jul 01 2011
| | Sample_last_update_date | Oct 20 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | Standard protocol for primary human tissue
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | TriZol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | RNA was amplified using the Ovation Biotin RNA Amplification and Labeling System (NuGEN, San Carlos, CA). Biotinylated cRNA were prepared according to the standard Affymetrix protocol from Nugen amplified RNA.
| | Sample_hyb_protocol | The cDNA was fragmented, labeled and hybridized to Affymetrix HT_HG-U133A microarrays (Affymetrix, Santa Clara, CA)
| | Sample_scan_protocol | standard Affymetrix protocol
| | Sample_data_processing | Data was normalized by robust multichip average using GeneSpring GX (Agilent).
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Kolja,,Eppert
| | Sample_contact_institute | University Health Network
| | Sample_contact_address | 101 College St., rm 8-301
| | Sample_contact_city | Toronto
| | Sample_contact_state | Ontario
| | Sample_contact_zip/postal_code | M5G 1L7
| | Sample_contact_country | Canada
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM753nnn/GSM753706/suppl/GSM753706.CEL.gz
| | Sample_series_id | GSE30375
| | Sample_series_id | GSE30377
| | Sample_data_row_count | 22215
| | |
|
GSM753707 | GPL3921 |
|
12E
|
12-CD34-/CD38+
|
sample #: 12
cell source: AML
leukemia stem cells (lsc): LSC-
sorted fraction: CD34-/CD38+
|
|
| Sample_geo_accession | GSM753707
| | Sample_status | Public on Aug 28 2011
| | Sample_submission_date | Jul 01 2011
| | Sample_last_update_date | Oct 20 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | Standard protocol for primary human tissue
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | TriZol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | RNA was amplified using the Ovation Biotin RNA Amplification and Labeling System (NuGEN, San Carlos, CA). Biotinylated cRNA were prepared according to the standard Affymetrix protocol from Nugen amplified RNA.
| | Sample_hyb_protocol | The cDNA was fragmented, labeled and hybridized to Affymetrix HT_HG-U133A microarrays (Affymetrix, Santa Clara, CA)
| | Sample_scan_protocol | standard Affymetrix protocol
| | Sample_data_processing | Data was normalized by robust multichip average using GeneSpring GX (Agilent).
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Kolja,,Eppert
| | Sample_contact_institute | University Health Network
| | Sample_contact_address | 101 College St., rm 8-301
| | Sample_contact_city | Toronto
| | Sample_contact_state | Ontario
| | Sample_contact_zip/postal_code | M5G 1L7
| | Sample_contact_country | Canada
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM753nnn/GSM753707/suppl/GSM753707.CEL.gz
| | Sample_series_id | GSE30375
| | Sample_series_id | GSE30377
| | Sample_data_row_count | 22215
| | |
|
GSM753708 | GPL3921 |
|
12G
|
12-CD34-/CD38-
|
sample #: 12
cell source: AML
leukemia stem cells (lsc): LSC-
sorted fraction: CD34-/CD38-
|
|
| Sample_geo_accession | GSM753708
| | Sample_status | Public on Aug 28 2011
| | Sample_submission_date | Jul 01 2011
| | Sample_last_update_date | Oct 20 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | Standard protocol for primary human tissue
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | TriZol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | RNA was amplified using the Ovation Biotin RNA Amplification and Labeling System (NuGEN, San Carlos, CA). Biotinylated cRNA were prepared according to the standard Affymetrix protocol from Nugen amplified RNA.
| | Sample_hyb_protocol | The cDNA was fragmented, labeled and hybridized to Affymetrix HT_HG-U133A microarrays (Affymetrix, Santa Clara, CA)
| | Sample_scan_protocol | standard Affymetrix protocol
| | Sample_data_processing | Data was normalized by robust multichip average using GeneSpring GX (Agilent).
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Kolja,,Eppert
| | Sample_contact_institute | University Health Network
| | Sample_contact_address | 101 College St., rm 8-301
| | Sample_contact_city | Toronto
| | Sample_contact_state | Ontario
| | Sample_contact_zip/postal_code | M5G 1L7
| | Sample_contact_country | Canada
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM753nnn/GSM753708/suppl/GSM753708.CEL.gz
| | Sample_series_id | GSE30375
| | Sample_series_id | GSE30377
| | Sample_data_row_count | 22215
| | |
|
GSM753709 | GPL3921 |
|
12H
|
12-Unsorted
|
sample #: 12
cell source: AML
leukemia stem cells (lsc): N/A
sorted fraction: Unsorted
|
|
| Sample_geo_accession | GSM753709
| | Sample_status | Public on Aug 28 2011
| | Sample_submission_date | Jul 01 2011
| | Sample_last_update_date | Oct 20 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | Standard protocol for primary human tissue
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | TriZol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | RNA was amplified using the Ovation Biotin RNA Amplification and Labeling System (NuGEN, San Carlos, CA). Biotinylated cRNA were prepared according to the standard Affymetrix protocol from Nugen amplified RNA.
| | Sample_hyb_protocol | The cDNA was fragmented, labeled and hybridized to Affymetrix HT_HG-U133A microarrays (Affymetrix, Santa Clara, CA)
| | Sample_scan_protocol | standard Affymetrix protocol
| | Sample_data_processing | Data was normalized by robust multichip average using GeneSpring GX (Agilent).
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Kolja,,Eppert
| | Sample_contact_institute | University Health Network
| | Sample_contact_address | 101 College St., rm 8-301
| | Sample_contact_city | Toronto
| | Sample_contact_state | Ontario
| | Sample_contact_zip/postal_code | M5G 1L7
| | Sample_contact_country | Canada
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM753nnn/GSM753709/suppl/GSM753709.CEL.gz
| | Sample_series_id | GSE30375
| | Sample_series_id | GSE30377
| | Sample_data_row_count | 22215
| | |
|
GSM753710 | GPL3921 |
|
13A
|
13-CD34+/CD38-
|
sample #: 13
cell source: AML
leukemia stem cells (lsc): LSC+
sorted fraction: CD34+/CD38-
|
|
| Sample_geo_accession | GSM753710
| | Sample_status | Public on Aug 28 2011
| | Sample_submission_date | Jul 01 2011
| | Sample_last_update_date | Oct 20 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | Standard protocol for primary human tissue
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | TriZol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | RNA was amplified using the Ovation Biotin RNA Amplification and Labeling System (NuGEN, San Carlos, CA). Biotinylated cRNA were prepared according to the standard Affymetrix protocol from Nugen amplified RNA.
| | Sample_hyb_protocol | The cDNA was fragmented, labeled and hybridized to Affymetrix HT_HG-U133A microarrays (Affymetrix, Santa Clara, CA)
| | Sample_scan_protocol | standard Affymetrix protocol
| | Sample_data_processing | Data was normalized by robust multichip average using GeneSpring GX (Agilent).
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Kolja,,Eppert
| | Sample_contact_institute | University Health Network
| | Sample_contact_address | 101 College St., rm 8-301
| | Sample_contact_city | Toronto
| | Sample_contact_state | Ontario
| | Sample_contact_zip/postal_code | M5G 1L7
| | Sample_contact_country | Canada
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM753nnn/GSM753710/suppl/GSM753710.CEL.gz
| | Sample_series_id | GSE30375
| | Sample_series_id | GSE30377
| | Sample_data_row_count | 22215
| | |
|
GSM753711 | GPL3921 |
|
13C
|
13-CD34+/CD38+
|
sample #: 13
cell source: AML
leukemia stem cells (lsc): LSC+
sorted fraction: CD34+/CD38+
|
|
| Sample_geo_accession | GSM753711
| | Sample_status | Public on Aug 28 2011
| | Sample_submission_date | Jul 01 2011
| | Sample_last_update_date | Oct 20 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | Standard protocol for primary human tissue
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | TriZol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | RNA was amplified using the Ovation Biotin RNA Amplification and Labeling System (NuGEN, San Carlos, CA). Biotinylated cRNA were prepared according to the standard Affymetrix protocol from Nugen amplified RNA.
| | Sample_hyb_protocol | The cDNA was fragmented, labeled and hybridized to Affymetrix HT_HG-U133A microarrays (Affymetrix, Santa Clara, CA)
| | Sample_scan_protocol | standard Affymetrix protocol
| | Sample_data_processing | Data was normalized by robust multichip average using GeneSpring GX (Agilent).
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Kolja,,Eppert
| | Sample_contact_institute | University Health Network
| | Sample_contact_address | 101 College St., rm 8-301
| | Sample_contact_city | Toronto
| | Sample_contact_state | Ontario
| | Sample_contact_zip/postal_code | M5G 1L7
| | Sample_contact_country | Canada
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM753nnn/GSM753711/suppl/GSM753711.CEL.gz
| | Sample_series_id | GSE30375
| | Sample_series_id | GSE30377
| | Sample_data_row_count | 22215
| | |
|
GSM753712 | GPL3921 |
|
13E
|
13-CD34-/CD38+
|
sample #: 13
cell source: AML
leukemia stem cells (lsc): LSC-
sorted fraction: CD34-/CD38+
|
|
| Sample_geo_accession | GSM753712
| | Sample_status | Public on Aug 28 2011
| | Sample_submission_date | Jul 01 2011
| | Sample_last_update_date | Oct 20 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | Standard protocol for primary human tissue
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | TriZol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | RNA was amplified using the Ovation Biotin RNA Amplification and Labeling System (NuGEN, San Carlos, CA). Biotinylated cRNA were prepared according to the standard Affymetrix protocol from Nugen amplified RNA.
| | Sample_hyb_protocol | The cDNA was fragmented, labeled and hybridized to Affymetrix HT_HG-U133A microarrays (Affymetrix, Santa Clara, CA)
| | Sample_scan_protocol | standard Affymetrix protocol
| | Sample_data_processing | Data was normalized by robust multichip average using GeneSpring GX (Agilent).
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Kolja,,Eppert
| | Sample_contact_institute | University Health Network
| | Sample_contact_address | 101 College St., rm 8-301
| | Sample_contact_city | Toronto
| | Sample_contact_state | Ontario
| | Sample_contact_zip/postal_code | M5G 1L7
| | Sample_contact_country | Canada
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM753nnn/GSM753712/suppl/GSM753712.CEL.gz
| | Sample_series_id | GSE30375
| | Sample_series_id | GSE30377
| | Sample_data_row_count | 22215
| | |
|
GSM753713 | GPL3921 |
|
13G
|
13-CD34-/CD38-
|
sample #: 13
cell source: AML
leukemia stem cells (lsc): LSC-
sorted fraction: CD34-/CD38-
|
|
| Sample_geo_accession | GSM753713
| | Sample_status | Public on Aug 28 2011
| | Sample_submission_date | Jul 01 2011
| | Sample_last_update_date | Oct 20 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | Standard protocol for primary human tissue
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | TriZol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | RNA was amplified using the Ovation Biotin RNA Amplification and Labeling System (NuGEN, San Carlos, CA). Biotinylated cRNA were prepared according to the standard Affymetrix protocol from Nugen amplified RNA.
| | Sample_hyb_protocol | The cDNA was fragmented, labeled and hybridized to Affymetrix HT_HG-U133A microarrays (Affymetrix, Santa Clara, CA)
| | Sample_scan_protocol | standard Affymetrix protocol
| | Sample_data_processing | Data was normalized by robust multichip average using GeneSpring GX (Agilent).
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Kolja,,Eppert
| | Sample_contact_institute | University Health Network
| | Sample_contact_address | 101 College St., rm 8-301
| | Sample_contact_city | Toronto
| | Sample_contact_state | Ontario
| | Sample_contact_zip/postal_code | M5G 1L7
| | Sample_contact_country | Canada
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM753nnn/GSM753713/suppl/GSM753713.CEL.gz
| | Sample_series_id | GSE30375
| | Sample_series_id | GSE30377
| | Sample_data_row_count | 22215
| | |
|
GSM753714 | GPL3921 |
|
13H
|
13 - unsorted
|
sample #: 13
cell source: AML
leukemia stem cells (lsc): N/A
sorted fraction: Unsorted
|
|
| Sample_geo_accession | GSM753714
| | Sample_status | Public on Aug 28 2011
| | Sample_submission_date | Jul 01 2011
| | Sample_last_update_date | Jun 07 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | Standard protocol for primary human tissue
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | TriZol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | RNA was amplified using the Ovation Biotin RNA Amplification and Labeling System (NuGEN, San Carlos, CA). Biotinylated cRNA were prepared according to the standard Affymetrix protocol from Nugen amplified RNA.
| | Sample_hyb_protocol | The cDNA was fragmented, labeled and hybridized to Affymetrix HT_HG-U133A microarrays (Affymetrix, Santa Clara, CA)
| | Sample_scan_protocol | standard Affymetrix protocol
| | Sample_data_processing | Data was normalized by robust multichip average using GeneSpring GX (Agilent).
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Kolja,,Eppert
| | Sample_contact_institute | University Health Network
| | Sample_contact_address | 101 College St., rm 8-301
| | Sample_contact_city | Toronto
| | Sample_contact_state | Ontario
| | Sample_contact_zip/postal_code | M5G 1L7
| | Sample_contact_country | Canada
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM753nnn/GSM753714/suppl/GSM753714.CEL.gz
| | Sample_series_id | GSE30375
| | Sample_series_id | GSE30377
| | Sample_data_row_count | 22215
| | |
|
GSM753715 | GPL3921 |
|
14A
|
14-CD34+/CD38-
|
sample #: 14
cell source: AML
leukemia stem cells (lsc): LSC-
sorted fraction: CD34+/CD38-
|
|
| Sample_geo_accession | GSM753715
| | Sample_status | Public on Aug 28 2011
| | Sample_submission_date | Jul 01 2011
| | Sample_last_update_date | Oct 20 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | Standard protocol for primary human tissue
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | TriZol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | RNA was amplified using the Ovation Biotin RNA Amplification and Labeling System (NuGEN, San Carlos, CA). Biotinylated cRNA were prepared according to the standard Affymetrix protocol from Nugen amplified RNA.
| | Sample_hyb_protocol | The cDNA was fragmented, labeled and hybridized to Affymetrix HT_HG-U133A microarrays (Affymetrix, Santa Clara, CA)
| | Sample_scan_protocol | standard Affymetrix protocol
| | Sample_data_processing | Data was normalized by robust multichip average using GeneSpring GX (Agilent).
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Kolja,,Eppert
| | Sample_contact_institute | University Health Network
| | Sample_contact_address | 101 College St., rm 8-301
| | Sample_contact_city | Toronto
| | Sample_contact_state | Ontario
| | Sample_contact_zip/postal_code | M5G 1L7
| | Sample_contact_country | Canada
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM753nnn/GSM753715/suppl/GSM753715.CEL.gz
| | Sample_series_id | GSE30375
| | Sample_series_id | GSE30377
| | Sample_data_row_count | 22215
| | |
|
GSM753716 | GPL3921 |
|
14C
|
14-CD34+/CD38+
|
sample #: 14
cell source: AML
leukemia stem cells (lsc): LSC-
sorted fraction: CD34+/CD38+
|
|
| Sample_geo_accession | GSM753716
| | Sample_status | Public on Aug 28 2011
| | Sample_submission_date | Jul 01 2011
| | Sample_last_update_date | Oct 20 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | Standard protocol for primary human tissue
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | TriZol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | RNA was amplified using the Ovation Biotin RNA Amplification and Labeling System (NuGEN, San Carlos, CA). Biotinylated cRNA were prepared according to the standard Affymetrix protocol from Nugen amplified RNA.
| | Sample_hyb_protocol | The cDNA was fragmented, labeled and hybridized to Affymetrix HT_HG-U133A microarrays (Affymetrix, Santa Clara, CA)
| | Sample_scan_protocol | standard Affymetrix protocol
| | Sample_data_processing | Data was normalized by robust multichip average using GeneSpring GX (Agilent).
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Kolja,,Eppert
| | Sample_contact_institute | University Health Network
| | Sample_contact_address | 101 College St., rm 8-301
| | Sample_contact_city | Toronto
| | Sample_contact_state | Ontario
| | Sample_contact_zip/postal_code | M5G 1L7
| | Sample_contact_country | Canada
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM753nnn/GSM753716/suppl/GSM753716.CEL.gz
| | Sample_series_id | GSE30375
| | Sample_series_id | GSE30377
| | Sample_data_row_count | 22215
| | |
|
GSM753717 | GPL3921 |
|
14E
|
14-CD34-/CD38+
|
sample #: 14
cell source: AML
leukemia stem cells (lsc): LSC-
sorted fraction: CD34-/CD38+
|
|
| Sample_geo_accession | GSM753717
| | Sample_status | Public on Aug 28 2011
| | Sample_submission_date | Jul 01 2011
| | Sample_last_update_date | Oct 20 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | Standard protocol for primary human tissue
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | TriZol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | RNA was amplified using the Ovation Biotin RNA Amplification and Labeling System (NuGEN, San Carlos, CA). Biotinylated cRNA were prepared according to the standard Affymetrix protocol from Nugen amplified RNA.
| | Sample_hyb_protocol | The cDNA was fragmented, labeled and hybridized to Affymetrix HT_HG-U133A microarrays (Affymetrix, Santa Clara, CA)
| | Sample_scan_protocol | standard Affymetrix protocol
| | Sample_data_processing | Data was normalized by robust multichip average using GeneSpring GX (Agilent).
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Kolja,,Eppert
| | Sample_contact_institute | University Health Network
| | Sample_contact_address | 101 College St., rm 8-301
| | Sample_contact_city | Toronto
| | Sample_contact_state | Ontario
| | Sample_contact_zip/postal_code | M5G 1L7
| | Sample_contact_country | Canada
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM753nnn/GSM753717/suppl/GSM753717.CEL.gz
| | Sample_series_id | GSE30375
| | Sample_series_id | GSE30377
| | Sample_data_row_count | 22215
| | |
|
GSM753718 | GPL3921 |
|
14G
|
14-CD34-/CD38-
|
sample #: 14
cell source: AML
leukemia stem cells (lsc): LSC-
sorted fraction: CD34-/CD38-
|
|
| Sample_geo_accession | GSM753718
| | Sample_status | Public on Aug 28 2011
| | Sample_submission_date | Jul 01 2011
| | Sample_last_update_date | Oct 20 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | Standard protocol for primary human tissue
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | TriZol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | RNA was amplified using the Ovation Biotin RNA Amplification and Labeling System (NuGEN, San Carlos, CA). Biotinylated cRNA were prepared according to the standard Affymetrix protocol from Nugen amplified RNA.
| | Sample_hyb_protocol | The cDNA was fragmented, labeled and hybridized to Affymetrix HT_HG-U133A microarrays (Affymetrix, Santa Clara, CA)
| | Sample_scan_protocol | standard Affymetrix protocol
| | Sample_data_processing | Data was normalized by robust multichip average using GeneSpring GX (Agilent).
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Kolja,,Eppert
| | Sample_contact_institute | University Health Network
| | Sample_contact_address | 101 College St., rm 8-301
| | Sample_contact_city | Toronto
| | Sample_contact_state | Ontario
| | Sample_contact_zip/postal_code | M5G 1L7
| | Sample_contact_country | Canada
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM753nnn/GSM753718/suppl/GSM753718.CEL.gz
| | Sample_series_id | GSE30375
| | Sample_series_id | GSE30377
| | Sample_data_row_count | 22215
| | |
|
GSM753719 | GPL3921 |
|
14H
|
14-Unsorted
|
sample #: 14
cell source: AML
leukemia stem cells (lsc): N/A
sorted fraction: Unsorted
|
|
| Sample_geo_accession | GSM753719
| | Sample_status | Public on Aug 28 2011
| | Sample_submission_date | Jul 01 2011
| | Sample_last_update_date | Oct 20 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | Standard protocol for primary human tissue
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | TriZol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | RNA was amplified using the Ovation Biotin RNA Amplification and Labeling System (NuGEN, San Carlos, CA). Biotinylated cRNA were prepared according to the standard Affymetrix protocol from Nugen amplified RNA.
| | Sample_hyb_protocol | The cDNA was fragmented, labeled and hybridized to Affymetrix HT_HG-U133A microarrays (Affymetrix, Santa Clara, CA)
| | Sample_scan_protocol | standard Affymetrix protocol
| | Sample_data_processing | Data was normalized by robust multichip average using GeneSpring GX (Agilent).
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Kolja,,Eppert
| | Sample_contact_institute | University Health Network
| | Sample_contact_address | 101 College St., rm 8-301
| | Sample_contact_city | Toronto
| | Sample_contact_state | Ontario
| | Sample_contact_zip/postal_code | M5G 1L7
| | Sample_contact_country | Canada
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM753nnn/GSM753719/suppl/GSM753719.CEL.gz
| | Sample_series_id | GSE30375
| | Sample_series_id | GSE30377
| | Sample_data_row_count | 22215
| | |
|
GSM753720 | GPL3921 |
|
15A
|
15-CD34+/CD38-
|
sample #: 15
cell source: AML
leukemia stem cells (lsc): N/A
sorted fraction: CD34+/CD38-
|
|
| Sample_geo_accession | GSM753720
| | Sample_status | Public on Aug 28 2011
| | Sample_submission_date | Jul 01 2011
| | Sample_last_update_date | Oct 20 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | Standard protocol for primary human tissue
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | TriZol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | RNA was amplified using the Ovation Biotin RNA Amplification and Labeling System (NuGEN, San Carlos, CA). Biotinylated cRNA were prepared according to the standard Affymetrix protocol from Nugen amplified RNA.
| | Sample_hyb_protocol | The cDNA was fragmented, labeled and hybridized to Affymetrix HT_HG-U133A microarrays (Affymetrix, Santa Clara, CA)
| | Sample_scan_protocol | standard Affymetrix protocol
| | Sample_data_processing | Data was normalized by robust multichip average using GeneSpring GX (Agilent).
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Kolja,,Eppert
| | Sample_contact_institute | University Health Network
| | Sample_contact_address | 101 College St., rm 8-301
| | Sample_contact_city | Toronto
| | Sample_contact_state | Ontario
| | Sample_contact_zip/postal_code | M5G 1L7
| | Sample_contact_country | Canada
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM753nnn/GSM753720/suppl/GSM753720.CEL.gz
| | Sample_series_id | GSE30375
| | Sample_series_id | GSE30377
| | Sample_data_row_count | 22215
| | |
|
GSM753721 | GPL3921 |
|
15C
|
15-CD34+/CD38+
|
sample #: 15
cell source: AML
leukemia stem cells (lsc): LSC-
sorted fraction: CD34+/CD38+
|
|
| Sample_geo_accession | GSM753721
| | Sample_status | Public on Aug 28 2011
| | Sample_submission_date | Jul 01 2011
| | Sample_last_update_date | Oct 20 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | Standard protocol for primary human tissue
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | TriZol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | RNA was amplified using the Ovation Biotin RNA Amplification and Labeling System (NuGEN, San Carlos, CA). Biotinylated cRNA were prepared according to the standard Affymetrix protocol from Nugen amplified RNA.
| | Sample_hyb_protocol | The cDNA was fragmented, labeled and hybridized to Affymetrix HT_HG-U133A microarrays (Affymetrix, Santa Clara, CA)
| | Sample_scan_protocol | standard Affymetrix protocol
| | Sample_data_processing | Data was normalized by robust multichip average using GeneSpring GX (Agilent).
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Kolja,,Eppert
| | Sample_contact_institute | University Health Network
| | Sample_contact_address | 101 College St., rm 8-301
| | Sample_contact_city | Toronto
| | Sample_contact_state | Ontario
| | Sample_contact_zip/postal_code | M5G 1L7
| | Sample_contact_country | Canada
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM753nnn/GSM753721/suppl/GSM753721.CEL.gz
| | Sample_series_id | GSE30375
| | Sample_series_id | GSE30377
| | Sample_data_row_count | 22215
| | |
|
GSM753722 | GPL3921 |
|
15E
|
15-CD34-/CD38+
|
sample #: 15
cell source: AML
leukemia stem cells (lsc): LSC-
sorted fraction: CD34-/CD38+
|
|
| Sample_geo_accession | GSM753722
| | Sample_status | Public on Aug 28 2011
| | Sample_submission_date | Jul 01 2011
| | Sample_last_update_date | Oct 20 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | Standard protocol for primary human tissue
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | TriZol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | RNA was amplified using the Ovation Biotin RNA Amplification and Labeling System (NuGEN, San Carlos, CA). Biotinylated cRNA were prepared according to the standard Affymetrix protocol from Nugen amplified RNA.
| | Sample_hyb_protocol | The cDNA was fragmented, labeled and hybridized to Affymetrix HT_HG-U133A microarrays (Affymetrix, Santa Clara, CA)
| | Sample_scan_protocol | standard Affymetrix protocol
| | Sample_data_processing | Data was normalized by robust multichip average using GeneSpring GX (Agilent).
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Kolja,,Eppert
| | Sample_contact_institute | University Health Network
| | Sample_contact_address | 101 College St., rm 8-301
| | Sample_contact_city | Toronto
| | Sample_contact_state | Ontario
| | Sample_contact_zip/postal_code | M5G 1L7
| | Sample_contact_country | Canada
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM753nnn/GSM753722/suppl/GSM753722.CEL.gz
| | Sample_series_id | GSE30375
| | Sample_series_id | GSE30377
| | Sample_data_row_count | 22215
| | |
|
GSM753723 | GPL3921 |
|
15G
|
15-CD34-/CD38-
|
sample #: 15
cell source: AML
leukemia stem cells (lsc): LSC-
sorted fraction: CD34-/CD38-
|
|
| Sample_geo_accession | GSM753723
| | Sample_status | Public on Aug 28 2011
| | Sample_submission_date | Jul 01 2011
| | Sample_last_update_date | Oct 20 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | Standard protocol for primary human tissue
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | TriZol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | RNA was amplified using the Ovation Biotin RNA Amplification and Labeling System (NuGEN, San Carlos, CA). Biotinylated cRNA were prepared according to the standard Affymetrix protocol from Nugen amplified RNA.
| | Sample_hyb_protocol | The cDNA was fragmented, labeled and hybridized to Affymetrix HT_HG-U133A microarrays (Affymetrix, Santa Clara, CA)
| | Sample_scan_protocol | standard Affymetrix protocol
| | Sample_data_processing | Data was normalized by robust multichip average using GeneSpring GX (Agilent).
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Kolja,,Eppert
| | Sample_contact_institute | University Health Network
| | Sample_contact_address | 101 College St., rm 8-301
| | Sample_contact_city | Toronto
| | Sample_contact_state | Ontario
| | Sample_contact_zip/postal_code | M5G 1L7
| | Sample_contact_country | Canada
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM753nnn/GSM753723/suppl/GSM753723.CEL.gz
| | Sample_series_id | GSE30375
| | Sample_series_id | GSE30377
| | Sample_data_row_count | 22215
| | |
|
GSM753724 | GPL3921 |
|
15H
|
15-Unsorted
|
sample #: 15
cell source: AML
leukemia stem cells (lsc): N/A
sorted fraction: Unsorted
|
|
| Sample_geo_accession | GSM753724
| | Sample_status | Public on Aug 28 2011
| | Sample_submission_date | Jul 01 2011
| | Sample_last_update_date | Oct 20 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | Standard protocol for primary human tissue
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | TriZol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | RNA was amplified using the Ovation Biotin RNA Amplification and Labeling System (NuGEN, San Carlos, CA). Biotinylated cRNA were prepared according to the standard Affymetrix protocol from Nugen amplified RNA.
| | Sample_hyb_protocol | The cDNA was fragmented, labeled and hybridized to Affymetrix HT_HG-U133A microarrays (Affymetrix, Santa Clara, CA)
| | Sample_scan_protocol | standard Affymetrix protocol
| | Sample_data_processing | Data was normalized by robust multichip average using GeneSpring GX (Agilent).
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Kolja,,Eppert
| | Sample_contact_institute | University Health Network
| | Sample_contact_address | 101 College St., rm 8-301
| | Sample_contact_city | Toronto
| | Sample_contact_state | Ontario
| | Sample_contact_zip/postal_code | M5G 1L7
| | Sample_contact_country | Canada
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM753nnn/GSM753724/suppl/GSM753724.CEL.gz
| | Sample_series_id | GSE30375
| | Sample_series_id | GSE30377
| | Sample_data_row_count | 22215
| | |
|
GSM753725 | GPL3921 |
|
16A
|
16-CD34+/CD38-
|
sample #: 16
cell source: AML
leukemia stem cells (lsc): N/A
sorted fraction: CD34+/CD38-
|
|
| Sample_geo_accession | GSM753725
| | Sample_status | Public on Aug 28 2011
| | Sample_submission_date | Jul 01 2011
| | Sample_last_update_date | Oct 20 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | Standard protocol for primary human tissue
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | TriZol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | RNA was amplified using the Ovation Biotin RNA Amplification and Labeling System (NuGEN, San Carlos, CA). Biotinylated cRNA were prepared according to the standard Affymetrix protocol from Nugen amplified RNA.
| | Sample_hyb_protocol | The cDNA was fragmented, labeled and hybridized to Affymetrix HT_HG-U133A microarrays (Affymetrix, Santa Clara, CA)
| | Sample_scan_protocol | standard Affymetrix protocol
| | Sample_data_processing | Data was normalized by robust multichip average using GeneSpring GX (Agilent).
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Kolja,,Eppert
| | Sample_contact_institute | University Health Network
| | Sample_contact_address | 101 College St., rm 8-301
| | Sample_contact_city | Toronto
| | Sample_contact_state | Ontario
| | Sample_contact_zip/postal_code | M5G 1L7
| | Sample_contact_country | Canada
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM753nnn/GSM753725/suppl/GSM753725.CEL.gz
| | Sample_series_id | GSE30375
| | Sample_series_id | GSE30377
| | Sample_data_row_count | 22215
| | |
|
GSM753726 | GPL3921 |
|
16C
|
16-CD34+/CD38+
|
sample #: 16
cell source: AML
leukemia stem cells (lsc): LSC-
sorted fraction: CD34+/CD38+
|
|
| Sample_geo_accession | GSM753726
| | Sample_status | Public on Aug 28 2011
| | Sample_submission_date | Jul 01 2011
| | Sample_last_update_date | Oct 20 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | Standard protocol for primary human tissue
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | TriZol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | RNA was amplified using the Ovation Biotin RNA Amplification and Labeling System (NuGEN, San Carlos, CA). Biotinylated cRNA were prepared according to the standard Affymetrix protocol from Nugen amplified RNA.
| | Sample_hyb_protocol | The cDNA was fragmented, labeled and hybridized to Affymetrix HT_HG-U133A microarrays (Affymetrix, Santa Clara, CA)
| | Sample_scan_protocol | standard Affymetrix protocol
| | Sample_data_processing | Data was normalized by robust multichip average using GeneSpring GX (Agilent).
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Kolja,,Eppert
| | Sample_contact_institute | University Health Network
| | Sample_contact_address | 101 College St., rm 8-301
| | Sample_contact_city | Toronto
| | Sample_contact_state | Ontario
| | Sample_contact_zip/postal_code | M5G 1L7
| | Sample_contact_country | Canada
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM753nnn/GSM753726/suppl/GSM753726.CEL.gz
| | Sample_series_id | GSE30375
| | Sample_series_id | GSE30377
| | Sample_data_row_count | 22215
| | |
|
GSM753727 | GPL3921 |
|
16E
|
16-CD34-/CD38+
|
sample #: 16
cell source: AML
leukemia stem cells (lsc): LSC-
sorted fraction: CD34-/CD38+
|
|
| Sample_geo_accession | GSM753727
| | Sample_status | Public on Aug 28 2011
| | Sample_submission_date | Jul 01 2011
| | Sample_last_update_date | Oct 20 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | Standard protocol for primary human tissue
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | TriZol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | RNA was amplified using the Ovation Biotin RNA Amplification and Labeling System (NuGEN, San Carlos, CA). Biotinylated cRNA were prepared according to the standard Affymetrix protocol from Nugen amplified RNA.
| | Sample_hyb_protocol | The cDNA was fragmented, labeled and hybridized to Affymetrix HT_HG-U133A microarrays (Affymetrix, Santa Clara, CA)
| | Sample_scan_protocol | standard Affymetrix protocol
| | Sample_data_processing | Data was normalized by robust multichip average using GeneSpring GX (Agilent).
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Kolja,,Eppert
| | Sample_contact_institute | University Health Network
| | Sample_contact_address | 101 College St., rm 8-301
| | Sample_contact_city | Toronto
| | Sample_contact_state | Ontario
| | Sample_contact_zip/postal_code | M5G 1L7
| | Sample_contact_country | Canada
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM753nnn/GSM753727/suppl/GSM753727.CEL.gz
| | Sample_series_id | GSE30375
| | Sample_series_id | GSE30377
| | Sample_data_row_count | 22215
| | |
|
GSM753728 | GPL3921 |
|
16G
|
16-CD34-/CD38-
|
sample #: 16
cell source: AML
leukemia stem cells (lsc): LSC-
sorted fraction: CD34-/CD38-
|
|
| Sample_geo_accession | GSM753728
| | Sample_status | Public on Aug 28 2011
| | Sample_submission_date | Jul 01 2011
| | Sample_last_update_date | Oct 20 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | Standard protocol for primary human tissue
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | TriZol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | RNA was amplified using the Ovation Biotin RNA Amplification and Labeling System (NuGEN, San Carlos, CA). Biotinylated cRNA were prepared according to the standard Affymetrix protocol from Nugen amplified RNA.
| | Sample_hyb_protocol | The cDNA was fragmented, labeled and hybridized to Affymetrix HT_HG-U133A microarrays (Affymetrix, Santa Clara, CA)
| | Sample_scan_protocol | standard Affymetrix protocol
| | Sample_data_processing | Data was normalized by robust multichip average using GeneSpring GX (Agilent).
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Kolja,,Eppert
| | Sample_contact_institute | University Health Network
| | Sample_contact_address | 101 College St., rm 8-301
| | Sample_contact_city | Toronto
| | Sample_contact_state | Ontario
| | Sample_contact_zip/postal_code | M5G 1L7
| | Sample_contact_country | Canada
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM753nnn/GSM753728/suppl/GSM753728.CEL.gz
| | Sample_series_id | GSE30375
| | Sample_series_id | GSE30377
| | Sample_data_row_count | 22215
| | |
|
GSM753729 | GPL3921 |
|
16H
|
16-Unsorted
|
sample #: 16
cell source: AML
leukemia stem cells (lsc): N/A
sorted fraction: Unsorted
|
|
| Sample_geo_accession | GSM753729
| | Sample_status | Public on Aug 28 2011
| | Sample_submission_date | Jul 01 2011
| | Sample_last_update_date | Oct 20 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | Standard protocol for primary human tissue
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | TriZol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | RNA was amplified using the Ovation Biotin RNA Amplification and Labeling System (NuGEN, San Carlos, CA). Biotinylated cRNA were prepared according to the standard Affymetrix protocol from Nugen amplified RNA.
| | Sample_hyb_protocol | The cDNA was fragmented, labeled and hybridized to Affymetrix HT_HG-U133A microarrays (Affymetrix, Santa Clara, CA)
| | Sample_scan_protocol | standard Affymetrix protocol
| | Sample_data_processing | Data was normalized by robust multichip average using GeneSpring GX (Agilent).
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Kolja,,Eppert
| | Sample_contact_institute | University Health Network
| | Sample_contact_address | 101 College St., rm 8-301
| | Sample_contact_city | Toronto
| | Sample_contact_state | Ontario
| | Sample_contact_zip/postal_code | M5G 1L7
| | Sample_contact_country | Canada
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM753nnn/GSM753729/suppl/GSM753729.CEL.gz
| | Sample_series_id | GSE30375
| | Sample_series_id | GSE30377
| | Sample_data_row_count | 22215
| | |
|
GSM753730 | GPL3921 |
|
17A
|
17-CD34+/CD38-
|
sample #: 17
cell source: AML
leukemia stem cells (lsc): N/A
sorted fraction: CD34+/CD38-
|
|
| Sample_geo_accession | GSM753730
| | Sample_status | Public on Aug 28 2011
| | Sample_submission_date | Jul 01 2011
| | Sample_last_update_date | Oct 20 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | Standard protocol for primary human tissue
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | TriZol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | RNA was amplified using the Ovation Biotin RNA Amplification and Labeling System (NuGEN, San Carlos, CA). Biotinylated cRNA were prepared according to the standard Affymetrix protocol from Nugen amplified RNA.
| | Sample_hyb_protocol | The cDNA was fragmented, labeled and hybridized to Affymetrix HT_HG-U133A microarrays (Affymetrix, Santa Clara, CA)
| | Sample_scan_protocol | standard Affymetrix protocol
| | Sample_data_processing | Data was normalized by robust multichip average using GeneSpring GX (Agilent).
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Kolja,,Eppert
| | Sample_contact_institute | University Health Network
| | Sample_contact_address | 101 College St., rm 8-301
| | Sample_contact_city | Toronto
| | Sample_contact_state | Ontario
| | Sample_contact_zip/postal_code | M5G 1L7
| | Sample_contact_country | Canada
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM753nnn/GSM753730/suppl/GSM753730.CEL.gz
| | Sample_series_id | GSE30375
| | Sample_series_id | GSE30377
| | Sample_data_row_count | 22215
| | |
|
GSM753731 | GPL3921 |
|
17C
|
17-CD34+/CD38+
|
sample #: 17
cell source: AML
leukemia stem cells (lsc): N/A
sorted fraction: CD34+/CD38+
|
|
| Sample_geo_accession | GSM753731
| | Sample_status | Public on Aug 28 2011
| | Sample_submission_date | Jul 01 2011
| | Sample_last_update_date | Oct 20 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | Standard protocol for primary human tissue
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | TriZol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | RNA was amplified using the Ovation Biotin RNA Amplification and Labeling System (NuGEN, San Carlos, CA). Biotinylated cRNA were prepared according to the standard Affymetrix protocol from Nugen amplified RNA.
| | Sample_hyb_protocol | The cDNA was fragmented, labeled and hybridized to Affymetrix HT_HG-U133A microarrays (Affymetrix, Santa Clara, CA)
| | Sample_scan_protocol | standard Affymetrix protocol
| | Sample_data_processing | Data was normalized by robust multichip average using GeneSpring GX (Agilent).
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Kolja,,Eppert
| | Sample_contact_institute | University Health Network
| | Sample_contact_address | 101 College St., rm 8-301
| | Sample_contact_city | Toronto
| | Sample_contact_state | Ontario
| | Sample_contact_zip/postal_code | M5G 1L7
| | Sample_contact_country | Canada
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM753nnn/GSM753731/suppl/GSM753731.CEL.gz
| | Sample_series_id | GSE30375
| | Sample_series_id | GSE30377
| | Sample_data_row_count | 22215
| | |
|
GSM753732 | GPL3921 |
|
18A
|
18-CD34+/CD38-
|
sample #: 18
cell source: AML
leukemia stem cells (lsc): N/A
sorted fraction: CD34+/CD38-
|
|
| Sample_geo_accession | GSM753732
| | Sample_status | Public on Aug 28 2011
| | Sample_submission_date | Jul 01 2011
| | Sample_last_update_date | Oct 20 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | Standard protocol for primary human tissue
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | TriZol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | RNA was amplified using the Ovation Biotin RNA Amplification and Labeling System (NuGEN, San Carlos, CA). Biotinylated cRNA were prepared according to the standard Affymetrix protocol from Nugen amplified RNA.
| | Sample_hyb_protocol | The cDNA was fragmented, labeled and hybridized to Affymetrix HT_HG-U133A microarrays (Affymetrix, Santa Clara, CA)
| | Sample_scan_protocol | standard Affymetrix protocol
| | Sample_data_processing | Data was normalized by robust multichip average using GeneSpring GX (Agilent).
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Kolja,,Eppert
| | Sample_contact_institute | University Health Network
| | Sample_contact_address | 101 College St., rm 8-301
| | Sample_contact_city | Toronto
| | Sample_contact_state | Ontario
| | Sample_contact_zip/postal_code | M5G 1L7
| | Sample_contact_country | Canada
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM753nnn/GSM753732/suppl/GSM753732.CEL.gz
| | Sample_series_id | GSE30375
| | Sample_series_id | GSE30377
| | Sample_data_row_count | 22215
| | |
|
GSM753733 | GPL3921 |
|
18C
|
18-CD34+/CD38+
|
sample #: 18
cell source: AML
leukemia stem cells (lsc): N/A
sorted fraction: CD34+/CD38+
|
|
| Sample_geo_accession | GSM753733
| | Sample_status | Public on Aug 28 2011
| | Sample_submission_date | Jul 01 2011
| | Sample_last_update_date | Oct 20 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | Standard protocol for primary human tissue
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | TriZol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | RNA was amplified using the Ovation Biotin RNA Amplification and Labeling System (NuGEN, San Carlos, CA). Biotinylated cRNA were prepared according to the standard Affymetrix protocol from Nugen amplified RNA.
| | Sample_hyb_protocol | The cDNA was fragmented, labeled and hybridized to Affymetrix HT_HG-U133A microarrays (Affymetrix, Santa Clara, CA)
| | Sample_scan_protocol | standard Affymetrix protocol
| | Sample_data_processing | Data was normalized by robust multichip average using GeneSpring GX (Agilent).
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Kolja,,Eppert
| | Sample_contact_institute | University Health Network
| | Sample_contact_address | 101 College St., rm 8-301
| | Sample_contact_city | Toronto
| | Sample_contact_state | Ontario
| | Sample_contact_zip/postal_code | M5G 1L7
| | Sample_contact_country | Canada
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM753nnn/GSM753733/suppl/GSM753733.CEL.gz
| | Sample_series_id | GSE30375
| | Sample_series_id | GSE30377
| | Sample_data_row_count | 22215
| | |
|
GSM753734 | GPL3921 |
|
19A
|
19-CD34+/CD38-
|
sample #: 19
cell source: AML
leukemia stem cells (lsc): N/A
sorted fraction: CD34+/CD38-
|
|
| Sample_geo_accession | GSM753734
| | Sample_status | Public on Aug 28 2011
| | Sample_submission_date | Jul 01 2011
| | Sample_last_update_date | Oct 20 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | Standard protocol for primary human tissue
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | TriZol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | RNA was amplified using the Ovation Biotin RNA Amplification and Labeling System (NuGEN, San Carlos, CA). Biotinylated cRNA were prepared according to the standard Affymetrix protocol from Nugen amplified RNA.
| | Sample_hyb_protocol | The cDNA was fragmented, labeled and hybridized to Affymetrix HT_HG-U133A microarrays (Affymetrix, Santa Clara, CA)
| | Sample_scan_protocol | standard Affymetrix protocol
| | Sample_data_processing | Data was normalized by robust multichip average using GeneSpring GX (Agilent).
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Kolja,,Eppert
| | Sample_contact_institute | University Health Network
| | Sample_contact_address | 101 College St., rm 8-301
| | Sample_contact_city | Toronto
| | Sample_contact_state | Ontario
| | Sample_contact_zip/postal_code | M5G 1L7
| | Sample_contact_country | Canada
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM753nnn/GSM753734/suppl/GSM753734.CEL.gz
| | Sample_series_id | GSE30375
| | Sample_series_id | GSE30377
| | Sample_data_row_count | 22215
| | |
|
GSM753735 | GPL3921 |
|
19C
|
19-CD34+/CD38+
|
sample #: 19
cell source: AML
leukemia stem cells (lsc): N/A
sorted fraction: CD34+/CD38+
|
|
| Sample_geo_accession | GSM753735
| | Sample_status | Public on Aug 28 2011
| | Sample_submission_date | Jul 01 2011
| | Sample_last_update_date | Oct 20 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | Standard protocol for primary human tissue
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | TriZol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | RNA was amplified using the Ovation Biotin RNA Amplification and Labeling System (NuGEN, San Carlos, CA). Biotinylated cRNA were prepared according to the standard Affymetrix protocol from Nugen amplified RNA.
| | Sample_hyb_protocol | The cDNA was fragmented, labeled and hybridized to Affymetrix HT_HG-U133A microarrays (Affymetrix, Santa Clara, CA)
| | Sample_scan_protocol | standard Affymetrix protocol
| | Sample_data_processing | Data was normalized by robust multichip average using GeneSpring GX (Agilent).
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Kolja,,Eppert
| | Sample_contact_institute | University Health Network
| | Sample_contact_address | 101 College St., rm 8-301
| | Sample_contact_city | Toronto
| | Sample_contact_state | Ontario
| | Sample_contact_zip/postal_code | M5G 1L7
| | Sample_contact_country | Canada
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM753nnn/GSM753735/suppl/GSM753735.CEL.gz
| | Sample_series_id | GSE30375
| | Sample_series_id | GSE30377
| | Sample_data_row_count | 22215
| | |
|
GSM753736 | GPL3921 |
|
20A
|
20-CD34+/CD38-
|
sample #: 20
cell source: AML
leukemia stem cells (lsc): N/A
sorted fraction: CD34+/CD38-
|
|
| Sample_geo_accession | GSM753736
| | Sample_status | Public on Aug 28 2011
| | Sample_submission_date | Jul 01 2011
| | Sample_last_update_date | Oct 20 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | Standard protocol for primary human tissue
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | TriZol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | RNA was amplified using the Ovation Biotin RNA Amplification and Labeling System (NuGEN, San Carlos, CA). Biotinylated cRNA were prepared according to the standard Affymetrix protocol from Nugen amplified RNA.
| | Sample_hyb_protocol | The cDNA was fragmented, labeled and hybridized to Affymetrix HT_HG-U133A microarrays (Affymetrix, Santa Clara, CA)
| | Sample_scan_protocol | standard Affymetrix protocol
| | Sample_data_processing | Data was normalized by robust multichip average using GeneSpring GX (Agilent).
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Kolja,,Eppert
| | Sample_contact_institute | University Health Network
| | Sample_contact_address | 101 College St., rm 8-301
| | Sample_contact_city | Toronto
| | Sample_contact_state | Ontario
| | Sample_contact_zip/postal_code | M5G 1L7
| | Sample_contact_country | Canada
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM753nnn/GSM753736/suppl/GSM753736.CEL.gz
| | Sample_series_id | GSE30375
| | Sample_series_id | GSE30377
| | Sample_data_row_count | 22215
| | |
|
GSM753737 | GPL3921 |
|
20C
|
20-CD34+/CD38+
|
sample #: 20
cell source: AML
leukemia stem cells (lsc): N/A
sorted fraction: CD34+/CD38+
|
|
| Sample_geo_accession | GSM753737
| | Sample_status | Public on Aug 28 2011
| | Sample_submission_date | Jul 01 2011
| | Sample_last_update_date | Oct 20 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | Standard protocol for primary human tissue
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | TriZol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | RNA was amplified using the Ovation Biotin RNA Amplification and Labeling System (NuGEN, San Carlos, CA). Biotinylated cRNA were prepared according to the standard Affymetrix protocol from Nugen amplified RNA.
| | Sample_hyb_protocol | The cDNA was fragmented, labeled and hybridized to Affymetrix HT_HG-U133A microarrays (Affymetrix, Santa Clara, CA)
| | Sample_scan_protocol | standard Affymetrix protocol
| | Sample_data_processing | Data was normalized by robust multichip average using GeneSpring GX (Agilent).
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Kolja,,Eppert
| | Sample_contact_institute | University Health Network
| | Sample_contact_address | 101 College St., rm 8-301
| | Sample_contact_city | Toronto
| | Sample_contact_state | Ontario
| | Sample_contact_zip/postal_code | M5G 1L7
| | Sample_contact_country | Canada
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM753nnn/GSM753737/suppl/GSM753737.CEL.gz
| | Sample_series_id | GSE30375
| | Sample_series_id | GSE30377
| | Sample_data_row_count | 22215
| | |
|
GSM753738 | GPL3921 |
|
21A
|
21-CD34+/CD38-
|
sample #: 21
cell source: AML
leukemia stem cells (lsc): N/A
sorted fraction: CD34+/CD38-
|
|
| Sample_geo_accession | GSM753738
| | Sample_status | Public on Aug 28 2011
| | Sample_submission_date | Jul 01 2011
| | Sample_last_update_date | Oct 20 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | Standard protocol for primary human tissue
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | TriZol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | RNA was amplified using the Ovation Biotin RNA Amplification and Labeling System (NuGEN, San Carlos, CA). Biotinylated cRNA were prepared according to the standard Affymetrix protocol from Nugen amplified RNA.
| | Sample_hyb_protocol | The cDNA was fragmented, labeled and hybridized to Affymetrix HT_HG-U133A microarrays (Affymetrix, Santa Clara, CA)
| | Sample_scan_protocol | standard Affymetrix protocol
| | Sample_data_processing | Data was normalized by robust multichip average using GeneSpring GX (Agilent).
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Kolja,,Eppert
| | Sample_contact_institute | University Health Network
| | Sample_contact_address | 101 College St., rm 8-301
| | Sample_contact_city | Toronto
| | Sample_contact_state | Ontario
| | Sample_contact_zip/postal_code | M5G 1L7
| | Sample_contact_country | Canada
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM753nnn/GSM753738/suppl/GSM753738.CEL.gz
| | Sample_series_id | GSE30375
| | Sample_series_id | GSE30377
| | Sample_data_row_count | 22215
| | |
|
GSM753739 | GPL3921 |
|
21C
|
21-CD34+/CD38+
|
sample #: 21
cell source: AML
leukemia stem cells (lsc): N/A
sorted fraction: CD34+/CD38+
|
|
| Sample_geo_accession | GSM753739
| | Sample_status | Public on Aug 28 2011
| | Sample_submission_date | Jul 01 2011
| | Sample_last_update_date | Oct 20 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | Standard protocol for primary human tissue
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | TriZol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | RNA was amplified using the Ovation Biotin RNA Amplification and Labeling System (NuGEN, San Carlos, CA). Biotinylated cRNA were prepared according to the standard Affymetrix protocol from Nugen amplified RNA.
| | Sample_hyb_protocol | The cDNA was fragmented, labeled and hybridized to Affymetrix HT_HG-U133A microarrays (Affymetrix, Santa Clara, CA)
| | Sample_scan_protocol | standard Affymetrix protocol
| | Sample_data_processing | Data was normalized by robust multichip average using GeneSpring GX (Agilent).
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Kolja,,Eppert
| | Sample_contact_institute | University Health Network
| | Sample_contact_address | 101 College St., rm 8-301
| | Sample_contact_city | Toronto
| | Sample_contact_state | Ontario
| | Sample_contact_zip/postal_code | M5G 1L7
| | Sample_contact_country | Canada
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM753nnn/GSM753739/suppl/GSM753739.CEL.gz
| | Sample_series_id | GSE30375
| | Sample_series_id | GSE30377
| | Sample_data_row_count | 22215
| | |
|
GSM753740 | GPL3921 |
|
22A
|
22-CD34+/CD38-
|
sample #: 22
cell source: AML
leukemia stem cells (lsc): N/A
sorted fraction: CD34+/CD38-
|
|
| Sample_geo_accession | GSM753740
| | Sample_status | Public on Aug 28 2011
| | Sample_submission_date | Jul 01 2011
| | Sample_last_update_date | Oct 20 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | Standard protocol for primary human tissue
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | TriZol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | RNA was amplified using the Ovation Biotin RNA Amplification and Labeling System (NuGEN, San Carlos, CA). Biotinylated cRNA were prepared according to the standard Affymetrix protocol from Nugen amplified RNA.
| | Sample_hyb_protocol | The cDNA was fragmented, labeled and hybridized to Affymetrix HT_HG-U133A microarrays (Affymetrix, Santa Clara, CA)
| | Sample_scan_protocol | standard Affymetrix protocol
| | Sample_data_processing | Data was normalized by robust multichip average using GeneSpring GX (Agilent).
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Kolja,,Eppert
| | Sample_contact_institute | University Health Network
| | Sample_contact_address | 101 College St., rm 8-301
| | Sample_contact_city | Toronto
| | Sample_contact_state | Ontario
| | Sample_contact_zip/postal_code | M5G 1L7
| | Sample_contact_country | Canada
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM753nnn/GSM753740/suppl/GSM753740.CEL.gz
| | Sample_series_id | GSE30375
| | Sample_series_id | GSE30377
| | Sample_data_row_count | 22215
| | |
|
GSM753741 | GPL3921 |
|
22C
|
22-CD34+/CD38+
|
sample #: 22
cell source: AML
leukemia stem cells (lsc): N/A
sorted fraction: CD34+/CD38+
|
|
| Sample_geo_accession | GSM753741
| | Sample_status | Public on Aug 28 2011
| | Sample_submission_date | Jul 01 2011
| | Sample_last_update_date | Oct 20 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | Standard protocol for primary human tissue
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | TriZol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | RNA was amplified using the Ovation Biotin RNA Amplification and Labeling System (NuGEN, San Carlos, CA). Biotinylated cRNA were prepared according to the standard Affymetrix protocol from Nugen amplified RNA.
| | Sample_hyb_protocol | The cDNA was fragmented, labeled and hybridized to Affymetrix HT_HG-U133A microarrays (Affymetrix, Santa Clara, CA)
| | Sample_scan_protocol | standard Affymetrix protocol
| | Sample_data_processing | Data was normalized by robust multichip average using GeneSpring GX (Agilent).
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Kolja,,Eppert
| | Sample_contact_institute | University Health Network
| | Sample_contact_address | 101 College St., rm 8-301
| | Sample_contact_city | Toronto
| | Sample_contact_state | Ontario
| | Sample_contact_zip/postal_code | M5G 1L7
| | Sample_contact_country | Canada
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM753nnn/GSM753741/suppl/GSM753741.CEL.gz
| | Sample_series_id | GSE30375
| | Sample_series_id | GSE30377
| | Sample_data_row_count | 22215
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GSM753742 | GPL3921 |
|
23A
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23-CD34+/CD38-
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sample #: 23
cell source: AML
leukemia stem cells (lsc): N/A
sorted fraction: CD34+/CD38-
|
|
| Sample_geo_accession | GSM753742
| | Sample_status | Public on Aug 28 2011
| | Sample_submission_date | Jul 01 2011
| | Sample_last_update_date | Oct 20 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | Standard protocol for primary human tissue
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | TriZol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | RNA was amplified using the Ovation Biotin RNA Amplification and Labeling System (NuGEN, San Carlos, CA). Biotinylated cRNA were prepared according to the standard Affymetrix protocol from Nugen amplified RNA.
| | Sample_hyb_protocol | The cDNA was fragmented, labeled and hybridized to Affymetrix HT_HG-U133A microarrays (Affymetrix, Santa Clara, CA)
| | Sample_scan_protocol | standard Affymetrix protocol
| | Sample_data_processing | Data was normalized by robust multichip average using GeneSpring GX (Agilent).
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Kolja,,Eppert
| | Sample_contact_institute | University Health Network
| | Sample_contact_address | 101 College St., rm 8-301
| | Sample_contact_city | Toronto
| | Sample_contact_state | Ontario
| | Sample_contact_zip/postal_code | M5G 1L7
| | Sample_contact_country | Canada
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM753nnn/GSM753742/suppl/GSM753742.CEL.gz
| | Sample_series_id | GSE30375
| | Sample_series_id | GSE30377
| | Sample_data_row_count | 22215
| | |
|
GSM753743 | GPL3921 |
|
23C
|
23-CD34+/CD38+
|
sample #: 23
cell source: AML
leukemia stem cells (lsc): N/A
sorted fraction: CD34+/CD38+
|
|
| Sample_geo_accession | GSM753743
| | Sample_status | Public on Aug 28 2011
| | Sample_submission_date | Jul 01 2011
| | Sample_last_update_date | Oct 20 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | Standard protocol for primary human tissue
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | TriZol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | RNA was amplified using the Ovation Biotin RNA Amplification and Labeling System (NuGEN, San Carlos, CA). Biotinylated cRNA were prepared according to the standard Affymetrix protocol from Nugen amplified RNA.
| | Sample_hyb_protocol | The cDNA was fragmented, labeled and hybridized to Affymetrix HT_HG-U133A microarrays (Affymetrix, Santa Clara, CA)
| | Sample_scan_protocol | standard Affymetrix protocol
| | Sample_data_processing | Data was normalized by robust multichip average using GeneSpring GX (Agilent).
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Kolja,,Eppert
| | Sample_contact_institute | University Health Network
| | Sample_contact_address | 101 College St., rm 8-301
| | Sample_contact_city | Toronto
| | Sample_contact_state | Ontario
| | Sample_contact_zip/postal_code | M5G 1L7
| | Sample_contact_country | Canada
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM753nnn/GSM753743/suppl/GSM753743.CEL.gz
| | Sample_series_id | GSE30375
| | Sample_series_id | GSE30377
| | Sample_data_row_count | 22215
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Make groups for comparisons |
(2 groups will be compared at a time) |
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| Select GSMs and click on "Add groups" |
Enter the group name here: |
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