Search results for the GEO ID: GSE30419  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM795638 | GPL1261 |
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Adult bone marrow MSC, replicate 1
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bone marrow stromal cells isolated from double-transgenic mice wnt1/cre-R26R-lacZ, MSC
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background: C57BL/6 x SV129
genotype: wnt1/CRE-R26R-lacZ
age: 10 weeks
developmental stage: adult
gender: female
tissue: bone marrow
cell type: mesenchymal stem cell (MSC)
|
MSC1
Mice background is C57BL/6 x SV129 as described in Glejzer et al. 2011 (PMID 20976520).
|
| Sample_geo_accession | GSM795638
| | Sample_status | Public on Sep 14 2011
| | Sample_submission_date | Sep 13 2011
| | Sample_last_update_date | Sep 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | None.
| | Sample_growth_protocol_ch1 | Cells were grown in Mesencult (Stem Cells Technology) medium for a minimum of 5 passages before clonal selection.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNeasy mini kit (Qiagen).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | 3' IVT Express kit (Affymetrix).
| | Sample_hyb_protocol | GeneChip Hybridization, Wash, and Stain Kit (Affymetrix).
| | Sample_scan_protocol | GeneChip Scanner 3000 7G, AGCC v1.1.
| | Sample_data_processing | Normalization and data filtering were performed using BRB-ArrayTools software version 3.8.1 developed by Dr. Richard Simons and the BRB-ArrayTools Development Team, http://linus.nci.nih.gov./BRB-ArrayTools.html. We used the GCRMA algorithm as the normalization step. The statistical analysis was done with the Class Comparison tool. The statistical analysis was done with BRB ArrayTools software.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | sabine,,wislet
| | Sample_contact_email | s.wislet@ulg.ac.be
| | Sample_contact_department | GIGA-Neurosciences
| | Sample_contact_institute | university of Liège
| | Sample_contact_address | 1 avenue de l'hopital
| | Sample_contact_city | Liège
| | Sample_contact_zip/postal_code | 4000
| | Sample_contact_country | Belgium
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM795nnn/GSM795638/suppl/GSM795638.CEL.gz
| | Sample_series_id | GSE30419
| | Sample_data_row_count | 45101
| | |
|
GSM795639 | GPL1261 |
|
Adult bone marrow MSC, replicate 2
|
bone marrow stromal cells isolated from double-transgenic mice wnt1/cre-R26R-lacZ, MSC
|
background: C57BL/6 x SV129
genotype: wnt1/CRE-R26R-lacZ
age: 10 weeks
developmental stage: adult
gender: female
tissue: bone marrow
cell type: mesenchymal stem cell (MSC)
|
MSC2
Mice background is C57BL/6 x SV129 as described in Glejzer et al. 2011 (PMID 20976520).
|
| Sample_geo_accession | GSM795639
| | Sample_status | Public on Sep 14 2011
| | Sample_submission_date | Sep 13 2011
| | Sample_last_update_date | Sep 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | None.
| | Sample_growth_protocol_ch1 | Cells were grown in Mesencult (Stem Cells Technology) medium for a minimum of 5 passages before clonal selection.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNeasy mini kit (Qiagen).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | 3' IVT Express kit (Affymetrix).
| | Sample_hyb_protocol | GeneChip Hybridization, Wash, and Stain Kit (Affymetrix).
| | Sample_scan_protocol | GeneChip Scanner 3000 7G, AGCC v1.1.
| | Sample_data_processing | Normalization and data filtering were performed using BRB-ArrayTools software version 3.8.1 developed by Dr. Richard Simons and the BRB-ArrayTools Development Team, http://linus.nci.nih.gov./BRB-ArrayTools.html. We used the GCRMA algorithm as the normalization step. The statistical analysis was done with the Class Comparison tool. The statistical analysis was done with BRB ArrayTools software.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | sabine,,wislet
| | Sample_contact_email | s.wislet@ulg.ac.be
| | Sample_contact_department | GIGA-Neurosciences
| | Sample_contact_institute | university of Liège
| | Sample_contact_address | 1 avenue de l'hopital
| | Sample_contact_city | Liège
| | Sample_contact_zip/postal_code | 4000
| | Sample_contact_country | Belgium
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM795nnn/GSM795639/suppl/GSM795639.CEL.gz
| | Sample_series_id | GSE30419
| | Sample_data_row_count | 45101
| | |
|
GSM795640 | GPL1261 |
|
Adult bone marrow MSC, replicate 3
|
bone marrow stromal cells isolated from double-transgenic mice wnt1/cre-R26R-lacZ, MSC
|
background: C57BL/6 x SV129
genotype: wnt1/CRE-R26R-lacZ
age: 10 weeks
developmental stage: adult
gender: female
tissue: bone marrow
cell type: mesenchymal stem cell (MSC)
|
MSC3
Mice background is C57BL/6 x SV129 as described in Glejzer et al. 2011 (PMID 20976520).
|
| Sample_geo_accession | GSM795640
| | Sample_status | Public on Sep 14 2011
| | Sample_submission_date | Sep 13 2011
| | Sample_last_update_date | Sep 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | None.
| | Sample_growth_protocol_ch1 | Cells were grown in Mesencult (Stem Cells Technology) medium for a minimum of 5 passages before clonal selection.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNeasy mini kit (Qiagen).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | 3' IVT Express kit (Affymetrix).
| | Sample_hyb_protocol | GeneChip Hybridization, Wash, and Stain Kit (Affymetrix).
| | Sample_scan_protocol | GeneChip Scanner 3000 7G, AGCC v1.1.
| | Sample_data_processing | Normalization and data filtering were performed using BRB-ArrayTools software version 3.8.1 developed by Dr. Richard Simons and the BRB-ArrayTools Development Team, http://linus.nci.nih.gov./BRB-ArrayTools.html. We used the GCRMA algorithm as the normalization step. The statistical analysis was done with the Class Comparison tool. The statistical analysis was done with BRB ArrayTools software.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | sabine,,wislet
| | Sample_contact_email | s.wislet@ulg.ac.be
| | Sample_contact_department | GIGA-Neurosciences
| | Sample_contact_institute | university of Liège
| | Sample_contact_address | 1 avenue de l'hopital
| | Sample_contact_city | Liège
| | Sample_contact_zip/postal_code | 4000
| | Sample_contact_country | Belgium
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM795nnn/GSM795640/suppl/GSM795640.CEL.gz
| | Sample_series_id | GSE30419
| | Sample_data_row_count | 45101
| | |
|
GSM795641 | GPL1261 |
|
Adult bone marrow NCSC, replicate 1
|
bone marrow stromal cells isolated from double-transgenic mice wnt1/cre-R26R-lacZ, NCSC
|
background: C57BL/6 x SV129
genotype: wnt1/CRE-R26R-lacZ
age: 10 weeks
developmental stage: adult
gender: female
tissue: bone marrow
cell type: neural crest stem cell (NCSC)
|
NCSC1
Mice background is C57BL/6 x SV129 as described in Glejzer et al. 2011 (PMID 20976520).
|
| Sample_geo_accession | GSM795641
| | Sample_status | Public on Sep 14 2011
| | Sample_submission_date | Sep 13 2011
| | Sample_last_update_date | Sep 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | None.
| | Sample_growth_protocol_ch1 | Cells were grown in Mesencult (Stem Cells Technology) medium for a minimum of 5 passages before clonal selection.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNeasy mini kit (Qiagen).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | 3' IVT Express kit (Affymetrix).
| | Sample_hyb_protocol | GeneChip Hybridization, Wash, and Stain Kit (Affymetrix).
| | Sample_scan_protocol | GeneChip Scanner 3000 7G, AGCC v1.1.
| | Sample_data_processing | Normalization and data filtering were performed using BRB-ArrayTools software version 3.8.1 developed by Dr. Richard Simons and the BRB-ArrayTools Development Team, http://linus.nci.nih.gov./BRB-ArrayTools.html. We used the GCRMA algorithm as the normalization step. The statistical analysis was done with the Class Comparison tool. The statistical analysis was done with BRB ArrayTools software.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | sabine,,wislet
| | Sample_contact_email | s.wislet@ulg.ac.be
| | Sample_contact_department | GIGA-Neurosciences
| | Sample_contact_institute | university of Liège
| | Sample_contact_address | 1 avenue de l'hopital
| | Sample_contact_city | Liège
| | Sample_contact_zip/postal_code | 4000
| | Sample_contact_country | Belgium
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM795nnn/GSM795641/suppl/GSM795641.CEL.gz
| | Sample_series_id | GSE30419
| | Sample_data_row_count | 45101
| | |
|
GSM795642 | GPL1261 |
|
Adult bone marrow NCSC, replicate 2
|
bone marrow stromal cells isolated from double-transgenic mice wnt1/cre-R26R-lacZ, NCSC
|
background: C57BL/6 x SV129
genotype: wnt1/CRE-R26R-lacZ
age: 10 weeks
developmental stage: adult
gender: female
tissue: bone marrow
cell type: neural crest stem cell (NCSC)
|
NCSC2
Mice background is C57BL/6 x SV129 as described in Glejzer et al. 2011 (PMID 20976520).
|
| Sample_geo_accession | GSM795642
| | Sample_status | Public on Sep 14 2011
| | Sample_submission_date | Sep 13 2011
| | Sample_last_update_date | Sep 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | None.
| | Sample_growth_protocol_ch1 | Cells were grown in Mesencult (Stem Cells Technology) medium for a minimum of 5 passages before clonal selection.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNeasy mini kit (Qiagen).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | 3' IVT Express kit (Affymetrix).
| | Sample_hyb_protocol | GeneChip Hybridization, Wash, and Stain Kit (Affymetrix).
| | Sample_scan_protocol | GeneChip Scanner 3000 7G, AGCC v1.1.
| | Sample_data_processing | Normalization and data filtering were performed using BRB-ArrayTools software version 3.8.1 developed by Dr. Richard Simons and the BRB-ArrayTools Development Team, http://linus.nci.nih.gov./BRB-ArrayTools.html. We used the GCRMA algorithm as the normalization step. The statistical analysis was done with the Class Comparison tool. The statistical analysis was done with BRB ArrayTools software.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | sabine,,wislet
| | Sample_contact_email | s.wislet@ulg.ac.be
| | Sample_contact_department | GIGA-Neurosciences
| | Sample_contact_institute | university of Liège
| | Sample_contact_address | 1 avenue de l'hopital
| | Sample_contact_city | Liège
| | Sample_contact_zip/postal_code | 4000
| | Sample_contact_country | Belgium
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM795nnn/GSM795642/suppl/GSM795642.CEL.gz
| | Sample_series_id | GSE30419
| | Sample_data_row_count | 45101
| | |
|
GSM795643 | GPL1261 |
|
Adult bone marrow NCSC, replicate 3
|
bone marrow stromal cells isolated from double-transgenic mice wnt1/cre-R26R-lacZ, NCSC
|
background: C57BL/6 x SV129
genotype: wnt1/CRE-R26R-lacZ
age: 10 weeks
developmental stage: adult
gender: female
tissue: bone marrow
cell type: neural crest stem cell (NCSC)
|
NCSC3
Mice background is C57BL/6 x SV129 as described in Glejzer et al. 2011 (PMID 20976520).
|
| Sample_geo_accession | GSM795643
| | Sample_status | Public on Sep 14 2011
| | Sample_submission_date | Sep 13 2011
| | Sample_last_update_date | Sep 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | None.
| | Sample_growth_protocol_ch1 | Cells were grown in Mesencult (Stem Cells Technology) medium for a minimum of 5 passages before clonal selection.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNeasy mini kit (Qiagen).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | 3' IVT Express kit (Affymetrix).
| | Sample_hyb_protocol | GeneChip Hybridization, Wash, and Stain Kit (Affymetrix).
| | Sample_scan_protocol | GeneChip Scanner 3000 7G, AGCC v1.1.
| | Sample_data_processing | Normalization and data filtering were performed using BRB-ArrayTools software version 3.8.1 developed by Dr. Richard Simons and the BRB-ArrayTools Development Team, http://linus.nci.nih.gov./BRB-ArrayTools.html. We used the GCRMA algorithm as the normalization step. The statistical analysis was done with the Class Comparison tool. The statistical analysis was done with BRB ArrayTools software.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | sabine,,wislet
| | Sample_contact_email | s.wislet@ulg.ac.be
| | Sample_contact_department | GIGA-Neurosciences
| | Sample_contact_institute | university of Liège
| | Sample_contact_address | 1 avenue de l'hopital
| | Sample_contact_city | Liège
| | Sample_contact_zip/postal_code | 4000
| | Sample_contact_country | Belgium
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM795nnn/GSM795643/suppl/GSM795643.CEL.gz
| | Sample_series_id | GSE30419
| | Sample_data_row_count | 45101
| | |
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