Search results for the GEO ID: GSE30522  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM756934 | GPL570 |
|
20050421_11_NCCIT_1_04-15-05
|
Embryonal carcinoma cell line NCCIT
|
tissue/origin: germ cell tumor line
cell type: Embryonal carcinoma cell line NCCIT
|
EC stem-like cells
|
| Sample_geo_accession | GSM756934
| | Sample_status | Public on Jul 09 2011
| | Sample_submission_date | Jul 08 2011
| | Sample_last_update_date | Jan 27 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were labeled with dye conjugated-antiCD monoclonal antibodies and sorted by MACS
| | Sample_growth_protocol_ch1 | Cells were isolated after overnight tissue digestion with collagenase in serum-free RPMI1640 media.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Sorted cell populations were lysed in RLT buffer for RNA isolation.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | GeneChip® Two-Cycle Target Labeling Kit
| | Sample_hyb_protocol | Following fragmentation, ten micrograms of adjusted cRNA from each sample was hybridized for 16 hours at 45 deg C to Affymetrix GeneChip
| | Sample_scan_protocol | Scanning was performed using the Affymetrix GeneChip 3000 Scanner. Images were processed into CEL files with the Affymetrix GCOS software.
| | Sample_data_processing | Raw CEL intensity data were RMA normalized using R/Bioconductor
| | Sample_platform_id | GPL570
| | Sample_contact_name | Alvin,Y,Liu
| | Sample_contact_email | aliu@uw.edu
| | Sample_contact_phone | 206 221-0603
| | Sample_contact_fax | 206 543-2275
| | Sample_contact_department | Urology
| | Sample_contact_institute | University of Washington
| | Sample_contact_address | 815 Mercer Street Box 358056
| | Sample_contact_city | Seattle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98109
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM756nnn/GSM756934/suppl/GSM756934_20050421_11_NCCIT_1_04-15-05.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM756nnn/GSM756934/suppl/GSM756934_20050421_11_NCCIT_1_04-15-05.CHP.gz
| | Sample_relation | Reanalyzed by: GSM867091
| | Sample_series_id | GSE30522
| | Sample_data_row_count | 54675
| | |
|
GSM756935 | GPL570 |
|
20061218_02_06-125_NB_CD13posi
|
Normal bladder stromal cells
|
tissue/origin: normal urinary bladder
cell type: Normal bladder stromal cells
|
CD13+ stromal cells
|
| Sample_geo_accession | GSM756935
| | Sample_status | Public on Jul 09 2011
| | Sample_submission_date | Jul 08 2011
| | Sample_last_update_date | Jul 09 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were labeled with dye conjugated-antiCD monoclonal antibodies and sorted by MACS
| | Sample_growth_protocol_ch1 | Cells were isolated after overnight tissue digestion with collagenase in serum-free RPMI1640 media.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Sorted cell populations were lysed in RLT buffer for RNA isolation.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | GeneChip® Two-Cycle Target Labeling Kit
| | Sample_hyb_protocol | Following fragmentation, ten micrograms of adjusted cRNA from each sample was hybridized for 16 hours at 45 deg C to Affymetrix GeneChip
| | Sample_scan_protocol | Scanning was performed using the Affymetrix GeneChip 3000 Scanner. Images were processed into CEL files with the Affymetrix GCOS software.
| | Sample_data_processing | Raw CEL intensity data were RMA normalized using R/Bioconductor
| | Sample_platform_id | GPL570
| | Sample_contact_name | Alvin,Y,Liu
| | Sample_contact_email | aliu@uw.edu
| | Sample_contact_phone | 206 221-0603
| | Sample_contact_fax | 206 543-2275
| | Sample_contact_department | Urology
| | Sample_contact_institute | University of Washington
| | Sample_contact_address | 815 Mercer Street Box 358056
| | Sample_contact_city | Seattle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98109
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM756nnn/GSM756935/suppl/GSM756935_20061218_02_06-125_NB_CD13posi.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM756nnn/GSM756935/suppl/GSM756935_20061218_02_06-125_NB_CD13posi.CHP.gz
| | Sample_series_id | GSE30522
| | Sample_data_row_count | 54675
| | |
|
GSM756936 | GPL570 |
|
20061218_03_CD104t_11-06-06
|
Normal bladder basal cells
|
tissue/origin: normal urinary bladder
cell type: Normal bladder basal cells
|
CD104+ basal cells
|
| Sample_geo_accession | GSM756936
| | Sample_status | Public on Jul 09 2011
| | Sample_submission_date | Jul 08 2011
| | Sample_last_update_date | Jul 09 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were labeled with dye conjugated-antiCD monoclonal antibodies and sorted by MACS
| | Sample_growth_protocol_ch1 | Cells were isolated after overnight tissue digestion with collagenase in serum-free RPMI1640 media.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Sorted cell populations were lysed in RLT buffer for RNA isolation.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | GeneChip® Two-Cycle Target Labeling Kit
| | Sample_hyb_protocol | Following fragmentation, ten micrograms of adjusted cRNA from each sample was hybridized for 16 hours at 45 deg C to Affymetrix GeneChip
| | Sample_scan_protocol | Scanning was performed using the Affymetrix GeneChip 3000 Scanner. Images were processed into CEL files with the Affymetrix GCOS software.
| | Sample_data_processing | Raw CEL intensity data were RMA normalized using R/Bioconductor
| | Sample_platform_id | GPL570
| | Sample_contact_name | Alvin,Y,Liu
| | Sample_contact_email | aliu@uw.edu
| | Sample_contact_phone | 206 221-0603
| | Sample_contact_fax | 206 543-2275
| | Sample_contact_department | Urology
| | Sample_contact_institute | University of Washington
| | Sample_contact_address | 815 Mercer Street Box 358056
| | Sample_contact_city | Seattle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98109
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM756nnn/GSM756936/suppl/GSM756936_20061218_03_CD104t_11-06-06.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM756nnn/GSM756936/suppl/GSM756936_20061218_03_CD104t_11-06-06.CHP.gz
| | Sample_series_id | GSE30522
| | Sample_data_row_count | 54675
| | |
|
GSM756937 | GPL570 |
|
20070619_05_07-015_NB_epi_CD9posi
|
Normal bladder urothelial cells
|
tissue/origin: normal urinary bladder
cell type: Normal bladder urothelial cells
|
CD9+ urothelial cells
|
| Sample_geo_accession | GSM756937
| | Sample_status | Public on Jul 09 2011
| | Sample_submission_date | Jul 08 2011
| | Sample_last_update_date | Jul 09 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were labeled with dye conjugated-antiCD monoclonal antibodies and sorted by MACS
| | Sample_growth_protocol_ch1 | Cells were isolated after overnight tissue digestion with collagenase in serum-free RPMI1640 media.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Sorted cell populations were lysed in RLT buffer for RNA isolation.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | GeneChip® Two-Cycle Target Labeling Kit
| | Sample_hyb_protocol | Following fragmentation, ten micrograms of adjusted cRNA from each sample was hybridized for 16 hours at 45 deg C to Affymetrix GeneChip
| | Sample_scan_protocol | Scanning was performed using the Affymetrix GeneChip 3000 Scanner. Images were processed into CEL files with the Affymetrix GCOS software.
| | Sample_data_processing | Raw CEL intensity data were RMA normalized using R/Bioconductor
| | Sample_platform_id | GPL570
| | Sample_contact_name | Alvin,Y,Liu
| | Sample_contact_email | aliu@uw.edu
| | Sample_contact_phone | 206 221-0603
| | Sample_contact_fax | 206 543-2275
| | Sample_contact_department | Urology
| | Sample_contact_institute | University of Washington
| | Sample_contact_address | 815 Mercer Street Box 358056
| | Sample_contact_city | Seattle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98109
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM756nnn/GSM756937/suppl/GSM756937_20070619_05_07-015_NB_epi_CD9posi.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM756nnn/GSM756937/suppl/GSM756937_20070619_05_07-015_NB_epi_CD9posi.CHP.gz
| | Sample_series_id | GSE30522
| | Sample_data_row_count | 54675
| | |
|
GSM756938 | GPL570 |
|
20070619_06_07-008_CB_epi_CD9posi
|
Bladder cancer cells
|
tissue/origin: bladder cancer
cell type: Bladder cancer cells
|
CD9+ bladder cancer cells
|
| Sample_geo_accession | GSM756938
| | Sample_status | Public on Jul 09 2011
| | Sample_submission_date | Jul 08 2011
| | Sample_last_update_date | Jul 09 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were labeled with dye conjugated-antiCD monoclonal antibodies and sorted by MACS
| | Sample_growth_protocol_ch1 | Cells were isolated after overnight tissue digestion with collagenase in serum-free RPMI1640 media.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Sorted cell populations were lysed in RLT buffer for RNA isolation.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | GeneChip® Two-Cycle Target Labeling Kit
| | Sample_hyb_protocol | Following fragmentation, ten micrograms of adjusted cRNA from each sample was hybridized for 16 hours at 45 deg C to Affymetrix GeneChip
| | Sample_scan_protocol | Scanning was performed using the Affymetrix GeneChip 3000 Scanner. Images were processed into CEL files with the Affymetrix GCOS software.
| | Sample_data_processing | Raw CEL intensity data were RMA normalized using R/Bioconductor
| | Sample_platform_id | GPL570
| | Sample_contact_name | Alvin,Y,Liu
| | Sample_contact_email | aliu@uw.edu
| | Sample_contact_phone | 206 221-0603
| | Sample_contact_fax | 206 543-2275
| | Sample_contact_department | Urology
| | Sample_contact_institute | University of Washington
| | Sample_contact_address | 815 Mercer Street Box 358056
| | Sample_contact_city | Seattle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98109
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM756nnn/GSM756938/suppl/GSM756938_20070619_06_07-008_CB_epi_CD9posi.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM756nnn/GSM756938/suppl/GSM756938_20070619_06_07-008_CB_epi_CD9posi.CHP.gz
| | Sample_series_id | GSE30522
| | Sample_data_row_count | 54675
| | |
|
GSM756939 | GPL570 |
|
20071120_10_07-068_CB_CD9nega_CD13posi
|
Bladder cancer-associated stromal cells
|
tissue/origin: bladder cancer stroma
cell type: Bladder cancer-associated stromal cells
|
CD13+ cancer-associated stromal cells
|
| Sample_geo_accession | GSM756939
| | Sample_status | Public on Jul 09 2011
| | Sample_submission_date | Jul 08 2011
| | Sample_last_update_date | Jul 09 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were labeled with dye conjugated-antiCD monoclonal antibodies and sorted by MACS
| | Sample_growth_protocol_ch1 | Cells were isolated after overnight tissue digestion with collagenase in serum-free RPMI1640 media.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Sorted cell populations were lysed in RLT buffer for RNA isolation.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | GeneChip® Two-Cycle Target Labeling Kit
| | Sample_hyb_protocol | Following fragmentation, ten micrograms of adjusted cRNA from each sample was hybridized for 16 hours at 45 deg C to Affymetrix GeneChip
| | Sample_scan_protocol | Scanning was performed using the Affymetrix GeneChip 3000 Scanner. Images were processed into CEL files with the Affymetrix GCOS software.
| | Sample_data_processing | Raw CEL intensity data were RMA normalized using R/Bioconductor
| | Sample_platform_id | GPL570
| | Sample_contact_name | Alvin,Y,Liu
| | Sample_contact_email | aliu@uw.edu
| | Sample_contact_phone | 206 221-0603
| | Sample_contact_fax | 206 543-2275
| | Sample_contact_department | Urology
| | Sample_contact_institute | University of Washington
| | Sample_contact_address | 815 Mercer Street Box 358056
| | Sample_contact_city | Seattle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98109
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM756nnn/GSM756939/suppl/GSM756939_20071120_10_07-068_CB_CD9nega_CD13posi.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM756nnn/GSM756939/suppl/GSM756939_20071120_10_07-068_CB_CD9nega_CD13posi.CHP.gz
| | Sample_series_id | GSE30522
| | Sample_data_row_count | 54675
| | |
|
GSM756940 | GPL570 |
|
20100726_01_H1_culture
|
Human embryonic stem cells
|
tissue/origin: human stem cell XY
cell type: Human embryonic stem cells
|
ES cells
|
| Sample_geo_accession | GSM756940
| | Sample_status | Public on Jul 09 2011
| | Sample_submission_date | Jul 08 2011
| | Sample_last_update_date | Jan 27 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were labeled with dye conjugated-antiCD monoclonal antibodies and sorted by MACS
| | Sample_growth_protocol_ch1 | Cells were isolated after overnight tissue digestion with collagenase in serum-free RPMI1640 media.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Sorted cell populations were lysed in RLT buffer for RNA isolation.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | GeneChip® One-Cycle Target Labeling Kit
| | Sample_hyb_protocol | Following fragmentation, ten micrograms of adjusted cRNA from each sample was hybridized for 16 hours at 45 deg C to Affymetrix GeneChip
| | Sample_scan_protocol | Scanning was performed using the Affymetrix GeneChip 3000 Scanner. Images were processed into CEL files with the Affymetrix GCOS software.
| | Sample_data_processing | Raw CEL intensity data were RMA normalized using R/Bioconductor
| | Sample_platform_id | GPL570
| | Sample_contact_name | Alvin,Y,Liu
| | Sample_contact_email | aliu@uw.edu
| | Sample_contact_phone | 206 221-0603
| | Sample_contact_fax | 206 543-2275
| | Sample_contact_department | Urology
| | Sample_contact_institute | University of Washington
| | Sample_contact_address | 815 Mercer Street Box 358056
| | Sample_contact_city | Seattle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98109
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM756nnn/GSM756940/suppl/GSM756940_20100726_01_H1_culture.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM756nnn/GSM756940/suppl/GSM756940_20100726_01_H1_culture.CHP.gz
| | Sample_relation | Reanalyzed by: GSM867095
| | Sample_series_id | GSE30522
| | Sample_data_row_count | 54675
| | |
|
GSM756941 | GPL570 |
|
20051221_07_05-206_NP
|
Normal prostate tissue
|
tissue/origin: normal prostate
cell type: Normal prostate tissue
|
bulk tissue
|
| Sample_geo_accession | GSM756941
| | Sample_status | Public on Jul 09 2011
| | Sample_submission_date | Jul 08 2011
| | Sample_last_update_date | Jul 09 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were labeled with dye conjugated-antiCD monoclonal antibodies and sorted by MACS
| | Sample_growth_protocol_ch1 | Cells were isolated after overnight tissue digestion with collagenase in serum-free RPMI1640 media.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Sorted cell populations were lysed in RLT buffer for RNA isolation.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | GeneChip® One-Cycle Target Labeling Kit
| | Sample_hyb_protocol | Following fragmentation, ten micrograms of adjusted cRNA from each sample was hybridized for 16 hours at 45 deg C to Affymetrix GeneChip
| | Sample_scan_protocol | Scanning was performed using the Affymetrix GeneChip 3000 Scanner. Images were processed into CEL files with the Affymetrix GCOS software.
| | Sample_data_processing | Raw CEL intensity data were RMA normalized using R/Bioconductor
| | Sample_platform_id | GPL570
| | Sample_contact_name | Alvin,Y,Liu
| | Sample_contact_email | aliu@uw.edu
| | Sample_contact_phone | 206 221-0603
| | Sample_contact_fax | 206 543-2275
| | Sample_contact_department | Urology
| | Sample_contact_institute | University of Washington
| | Sample_contact_address | 815 Mercer Street Box 358056
| | Sample_contact_city | Seattle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98109
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM756nnn/GSM756941/suppl/GSM756941_20051221_07_05-206_NP.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM756nnn/GSM756941/suppl/GSM756941_20051221_07_05-206_NP.CHP.gz
| | Sample_series_id | GSE30522
| | Sample_data_row_count | 54675
| | |
|
GSM756942 | GPL570 |
|
20051221_08_05-206_CaP
|
Prostate cancer tissue
|
tissue/origin: prostate cancer
cell type: Prostate cancer tissue
|
bulk tissue
|
| Sample_geo_accession | GSM756942
| | Sample_status | Public on Jul 09 2011
| | Sample_submission_date | Jul 08 2011
| | Sample_last_update_date | Jul 09 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were labeled with dye conjugated-antiCD monoclonal antibodies and sorted by MACS
| | Sample_growth_protocol_ch1 | Cells were isolated after overnight tissue digestion with collagenase in serum-free RPMI1640 media.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Sorted cell populations were lysed in RLT buffer for RNA isolation.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | GeneChip® One-Cycle Target Labeling Kit
| | Sample_hyb_protocol | Following fragmentation, ten micrograms of adjusted cRNA from each sample was hybridized for 16 hours at 45 deg C to Affymetrix GeneChip
| | Sample_scan_protocol | Scanning was performed using the Affymetrix GeneChip 3000 Scanner. Images were processed into CEL files with the Affymetrix GCOS software.
| | Sample_data_processing | Raw CEL intensity data were RMA normalized using R/Bioconductor
| | Sample_platform_id | GPL570
| | Sample_contact_name | Alvin,Y,Liu
| | Sample_contact_email | aliu@uw.edu
| | Sample_contact_phone | 206 221-0603
| | Sample_contact_fax | 206 543-2275
| | Sample_contact_department | Urology
| | Sample_contact_institute | University of Washington
| | Sample_contact_address | 815 Mercer Street Box 358056
| | Sample_contact_city | Seattle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98109
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM756nnn/GSM756942/suppl/GSM756942_20051221_08_05-206_CaP.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM756nnn/GSM756942/suppl/GSM756942_20051221_08_05-206_CaP.CHP.gz
| | Sample_series_id | GSE30522
| | Sample_data_row_count | 54675
| | |
|
GSM756943 | GPL570 |
|
20051221_09_05-213_NP
|
Normal prostate tissue
|
tissue/origin: normal prostate
cell type: Normal prostate tissue
|
bulk tissue
|
| Sample_geo_accession | GSM756943
| | Sample_status | Public on Jul 09 2011
| | Sample_submission_date | Jul 08 2011
| | Sample_last_update_date | Jul 09 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were labeled with dye conjugated-antiCD monoclonal antibodies and sorted by MACS
| | Sample_growth_protocol_ch1 | Cells were isolated after overnight tissue digestion with collagenase in serum-free RPMI1640 media.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Sorted cell populations were lysed in RLT buffer for RNA isolation.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | GeneChip® One-Cycle Target Labeling Kit
| | Sample_hyb_protocol | Following fragmentation, ten micrograms of adjusted cRNA from each sample was hybridized for 16 hours at 45 deg C to Affymetrix GeneChip
| | Sample_scan_protocol | Scanning was performed using the Affymetrix GeneChip 3000 Scanner. Images were processed into CEL files with the Affymetrix GCOS software.
| | Sample_data_processing | Raw CEL intensity data were RMA normalized using R/Bioconductor
| | Sample_platform_id | GPL570
| | Sample_contact_name | Alvin,Y,Liu
| | Sample_contact_email | aliu@uw.edu
| | Sample_contact_phone | 206 221-0603
| | Sample_contact_fax | 206 543-2275
| | Sample_contact_department | Urology
| | Sample_contact_institute | University of Washington
| | Sample_contact_address | 815 Mercer Street Box 358056
| | Sample_contact_city | Seattle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98109
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM756nnn/GSM756943/suppl/GSM756943_20051221_09_05-213_NP.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM756nnn/GSM756943/suppl/GSM756943_20051221_09_05-213_NP.CHP.gz
| | Sample_series_id | GSE30522
| | Sample_data_row_count | 54675
| | |
|
GSM756944 | GPL570 |
|
20051221_10_05-213_CaP
|
Prostate cancer tissue
|
tissue/origin: prostate cancer
cell type: Prostate cancer tissue
|
bulk tissue
|
| Sample_geo_accession | GSM756944
| | Sample_status | Public on Jul 09 2011
| | Sample_submission_date | Jul 08 2011
| | Sample_last_update_date | Jul 09 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were labeled with dye conjugated-antiCD monoclonal antibodies and sorted by MACS
| | Sample_growth_protocol_ch1 | Cells were isolated after overnight tissue digestion with collagenase in serum-free RPMI1640 media.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Sorted cell populations were lysed in RLT buffer for RNA isolation.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | GeneChip® One-Cycle Target Labeling Kit
| | Sample_hyb_protocol | Following fragmentation, ten micrograms of adjusted cRNA from each sample was hybridized for 16 hours at 45 deg C to Affymetrix GeneChip
| | Sample_scan_protocol | Scanning was performed using the Affymetrix GeneChip 3000 Scanner. Images were processed into CEL files with the Affymetrix GCOS software.
| | Sample_data_processing | Raw CEL intensity data were RMA normalized using R/Bioconductor
| | Sample_platform_id | GPL570
| | Sample_contact_name | Alvin,Y,Liu
| | Sample_contact_email | aliu@uw.edu
| | Sample_contact_phone | 206 221-0603
| | Sample_contact_fax | 206 543-2275
| | Sample_contact_department | Urology
| | Sample_contact_institute | University of Washington
| | Sample_contact_address | 815 Mercer Street Box 358056
| | Sample_contact_city | Seattle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98109
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM756nnn/GSM756944/suppl/GSM756944_20051221_10_05-213_CaP.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM756nnn/GSM756944/suppl/GSM756944_20051221_10_05-213_CaP.CHP.gz
| | Sample_series_id | GSE30522
| | Sample_data_row_count | 54675
| | |
|
GSM756945 | GPL570 |
|
20051222_07_05-215_NP
|
Normal prostate tissue
|
tissue/origin: normal prostate
cell type: Normal prostate tissue
|
bulk tissue
|
| Sample_geo_accession | GSM756945
| | Sample_status | Public on Jul 09 2011
| | Sample_submission_date | Jul 08 2011
| | Sample_last_update_date | Jul 09 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were labeled with dye conjugated-antiCD monoclonal antibodies and sorted by MACS
| | Sample_growth_protocol_ch1 | Cells were isolated after overnight tissue digestion with collagenase in serum-free RPMI1640 media.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Sorted cell populations were lysed in RLT buffer for RNA isolation.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | GeneChip® One-Cycle Target Labeling Kit
| | Sample_hyb_protocol | Following fragmentation, ten micrograms of adjusted cRNA from each sample was hybridized for 16 hours at 45 deg C to Affymetrix GeneChip
| | Sample_scan_protocol | Scanning was performed using the Affymetrix GeneChip 3000 Scanner. Images were processed into CEL files with the Affymetrix GCOS software.
| | Sample_data_processing | Raw CEL intensity data were RMA normalized using R/Bioconductor
| | Sample_platform_id | GPL570
| | Sample_contact_name | Alvin,Y,Liu
| | Sample_contact_email | aliu@uw.edu
| | Sample_contact_phone | 206 221-0603
| | Sample_contact_fax | 206 543-2275
| | Sample_contact_department | Urology
| | Sample_contact_institute | University of Washington
| | Sample_contact_address | 815 Mercer Street Box 358056
| | Sample_contact_city | Seattle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98109
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM756nnn/GSM756945/suppl/GSM756945_20051222_07_05-215_NP.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM756nnn/GSM756945/suppl/GSM756945_20051222_07_05-215_NP.CHP.gz
| | Sample_series_id | GSE30522
| | Sample_data_row_count | 54675
| | |
|
GSM756946 | GPL570 |
|
20051222_08_05-215_CaP
|
Prostate cancer tissue
|
tissue/origin: prostate cancer
cell type: Prostate cancer tissue
|
bulk tissue
|
| Sample_geo_accession | GSM756946
| | Sample_status | Public on Jul 09 2011
| | Sample_submission_date | Jul 08 2011
| | Sample_last_update_date | Jul 09 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were labeled with dye conjugated-antiCD monoclonal antibodies and sorted by MACS
| | Sample_growth_protocol_ch1 | Cells were isolated after overnight tissue digestion with collagenase in serum-free RPMI1640 media.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Sorted cell populations were lysed in RLT buffer for RNA isolation.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | GeneChip® One-Cycle Target Labeling Kit
| | Sample_hyb_protocol | Following fragmentation, ten micrograms of adjusted cRNA from each sample was hybridized for 16 hours at 45 deg C to Affymetrix GeneChip
| | Sample_scan_protocol | Scanning was performed using the Affymetrix GeneChip 3000 Scanner. Images were processed into CEL files with the Affymetrix GCOS software.
| | Sample_data_processing | Raw CEL intensity data were RMA normalized using R/Bioconductor
| | Sample_platform_id | GPL570
| | Sample_contact_name | Alvin,Y,Liu
| | Sample_contact_email | aliu@uw.edu
| | Sample_contact_phone | 206 221-0603
| | Sample_contact_fax | 206 543-2275
| | Sample_contact_department | Urology
| | Sample_contact_institute | University of Washington
| | Sample_contact_address | 815 Mercer Street Box 358056
| | Sample_contact_city | Seattle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98109
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM756nnn/GSM756946/suppl/GSM756946_20051222_08_05-215_CaP.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM756nnn/GSM756946/suppl/GSM756946_20051222_08_05-215_CaP.CHP.gz
| | Sample_series_id | GSE30522
| | Sample_data_row_count | 54675
| | |
|
GSM756947 | GPL570 |
|
20060130_01_05-218_CaP
|
Prostate cancer tissue
|
tissue/origin: prostate cancer
cell type: Prostate cancer tissue
|
bulk tissue
|
| Sample_geo_accession | GSM756947
| | Sample_status | Public on Jul 09 2011
| | Sample_submission_date | Jul 08 2011
| | Sample_last_update_date | Jul 09 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were labeled with dye conjugated-antiCD monoclonal antibodies and sorted by MACS
| | Sample_growth_protocol_ch1 | Cells were isolated after overnight tissue digestion with collagenase in serum-free RPMI1640 media.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Sorted cell populations were lysed in RLT buffer for RNA isolation.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | GeneChip® One-Cycle Target Labeling Kit
| | Sample_hyb_protocol | Following fragmentation, ten micrograms of adjusted cRNA from each sample was hybridized for 16 hours at 45 deg C to Affymetrix GeneChip
| | Sample_scan_protocol | Scanning was performed using the Affymetrix GeneChip 3000 Scanner. Images were processed into CEL files with the Affymetrix GCOS software.
| | Sample_data_processing | Raw CEL intensity data were RMA normalized using R/Bioconductor
| | Sample_platform_id | GPL570
| | Sample_contact_name | Alvin,Y,Liu
| | Sample_contact_email | aliu@uw.edu
| | Sample_contact_phone | 206 221-0603
| | Sample_contact_fax | 206 543-2275
| | Sample_contact_department | Urology
| | Sample_contact_institute | University of Washington
| | Sample_contact_address | 815 Mercer Street Box 358056
| | Sample_contact_city | Seattle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98109
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM756nnn/GSM756947/suppl/GSM756947_20060130_01_05-218_CaP.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM756nnn/GSM756947/suppl/GSM756947_20060130_01_05-218_CaP.CHP.gz
| | Sample_series_id | GSE30522
| | Sample_data_row_count | 54675
| | |
|
GSM756948 | GPL570 |
|
20060130_02_05-218_NP
|
Normal prostate tissue
|
tissue/origin: normal prostate
cell type: Normal prostate tissue
|
bulk tissue
|
| Sample_geo_accession | GSM756948
| | Sample_status | Public on Jul 09 2011
| | Sample_submission_date | Jul 08 2011
| | Sample_last_update_date | Jul 09 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were labeled with dye conjugated-antiCD monoclonal antibodies and sorted by MACS
| | Sample_growth_protocol_ch1 | Cells were isolated after overnight tissue digestion with collagenase in serum-free RPMI1640 media.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Sorted cell populations were lysed in RLT buffer for RNA isolation.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | GeneChip® One-Cycle Target Labeling Kit
| | Sample_hyb_protocol | Following fragmentation, ten micrograms of adjusted cRNA from each sample was hybridized for 16 hours at 45 deg C to Affymetrix GeneChip
| | Sample_scan_protocol | Scanning was performed using the Affymetrix GeneChip 3000 Scanner. Images were processed into CEL files with the Affymetrix GCOS software.
| | Sample_data_processing | Raw CEL intensity data were RMA normalized using R/Bioconductor
| | Sample_platform_id | GPL570
| | Sample_contact_name | Alvin,Y,Liu
| | Sample_contact_email | aliu@uw.edu
| | Sample_contact_phone | 206 221-0603
| | Sample_contact_fax | 206 543-2275
| | Sample_contact_department | Urology
| | Sample_contact_institute | University of Washington
| | Sample_contact_address | 815 Mercer Street Box 358056
| | Sample_contact_city | Seattle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98109
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM756nnn/GSM756948/suppl/GSM756948_20060130_02_05-218_NP.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM756nnn/GSM756948/suppl/GSM756948_20060130_02_05-218_NP.CHP.gz
| | Sample_series_id | GSE30522
| | Sample_data_row_count | 54675
| | |
|
GSM756949 | GPL570 |
|
20060130_03_05-220_CaP
|
Prostate cancer tissue
|
tissue/origin: prostate cancer
cell type: Prostate cancer tissue
|
bulk tissue
|
| Sample_geo_accession | GSM756949
| | Sample_status | Public on Jul 09 2011
| | Sample_submission_date | Jul 08 2011
| | Sample_last_update_date | Jul 09 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were labeled with dye conjugated-antiCD monoclonal antibodies and sorted by MACS
| | Sample_growth_protocol_ch1 | Cells were isolated after overnight tissue digestion with collagenase in serum-free RPMI1640 media.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Sorted cell populations were lysed in RLT buffer for RNA isolation.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | GeneChip® One-Cycle Target Labeling Kit
| | Sample_hyb_protocol | Following fragmentation, ten micrograms of adjusted cRNA from each sample was hybridized for 16 hours at 45 deg C to Affymetrix GeneChip
| | Sample_scan_protocol | Scanning was performed using the Affymetrix GeneChip 3000 Scanner. Images were processed into CEL files with the Affymetrix GCOS software.
| | Sample_data_processing | Raw CEL intensity data were RMA normalized using R/Bioconductor
| | Sample_platform_id | GPL570
| | Sample_contact_name | Alvin,Y,Liu
| | Sample_contact_email | aliu@uw.edu
| | Sample_contact_phone | 206 221-0603
| | Sample_contact_fax | 206 543-2275
| | Sample_contact_department | Urology
| | Sample_contact_institute | University of Washington
| | Sample_contact_address | 815 Mercer Street Box 358056
| | Sample_contact_city | Seattle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98109
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM756nnn/GSM756949/suppl/GSM756949_20060130_03_05-220_CaP.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM756nnn/GSM756949/suppl/GSM756949_20060130_03_05-220_CaP.CHP.gz
| | Sample_series_id | GSE30522
| | Sample_data_row_count | 54675
| | |
|
GSM756950 | GPL570 |
|
20060130_04_05-220_NP
|
Normal prostate tissue
|
tissue/origin: normal prostate
cell type: Normal prostate tissue
|
bulk tissue
|
| Sample_geo_accession | GSM756950
| | Sample_status | Public on Jul 09 2011
| | Sample_submission_date | Jul 08 2011
| | Sample_last_update_date | Jul 09 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were labeled with dye conjugated-antiCD monoclonal antibodies and sorted by MACS
| | Sample_growth_protocol_ch1 | Cells were isolated after overnight tissue digestion with collagenase in serum-free RPMI1640 media.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Sorted cell populations were lysed in RLT buffer for RNA isolation.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | GeneChip® One-Cycle Target Labeling Kit
| | Sample_hyb_protocol | Following fragmentation, ten micrograms of adjusted cRNA from each sample was hybridized for 16 hours at 45 deg C to Affymetrix GeneChip
| | Sample_scan_protocol | Scanning was performed using the Affymetrix GeneChip 3000 Scanner. Images were processed into CEL files with the Affymetrix GCOS software.
| | Sample_data_processing | Raw CEL intensity data were RMA normalized using R/Bioconductor
| | Sample_platform_id | GPL570
| | Sample_contact_name | Alvin,Y,Liu
| | Sample_contact_email | aliu@uw.edu
| | Sample_contact_phone | 206 221-0603
| | Sample_contact_fax | 206 543-2275
| | Sample_contact_department | Urology
| | Sample_contact_institute | University of Washington
| | Sample_contact_address | 815 Mercer Street Box 358056
| | Sample_contact_city | Seattle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98109
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM756nnn/GSM756950/suppl/GSM756950_20060130_04_05-220_NP.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM756nnn/GSM756950/suppl/GSM756950_20060130_04_05-220_NP.CHP.gz
| | Sample_series_id | GSE30522
| | Sample_data_row_count | 54675
| | |
|
| |
| |
Make groups for comparisons |
(2 groups will be compared at a time) |
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| Select GSMs and click on "Add groups" |
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