Search results for the GEO ID: GSE30540 ![](/q11.jpeg) |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM757713 | GPL570 |
|
Expression data of 358_SCa
|
Patient 358
|
tissue: Colorecal Cancer
|
CIN-high
|
Sample_geo_accession | GSM757713
| Sample_status | Public on Jul 04 2012
| Sample_submission_date | Jul 10 2011
| Sample_last_update_date | Jul 04 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Surgically isolated colorectal cancers were immediately frozen in liquid nitrogen. Tissues were lysed and total RNA was isolated using RNeasy Mini Kit (QIAGEN, Chatswort,CA) according to the manufacturer’s instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Approximately 8 ug of total RNA was processed to produce biotinylated cRNA targets.
| Sample_hyb_protocol | standard Affymetrix procedures
| Sample_scan_protocol | standard Affymetrix procedures
| Sample_data_processing | Rubust Multichip Analysis (RMA)
| Sample_platform_id | GPL570
| Sample_contact_name | Toshiaki,,Watanabe
| Sample_contact_email | toshwatanabe@yahoo.co.jp
| Sample_contact_phone | 81-3-5800-8653
| Sample_contact_fax | 81-3-3811-6822
| Sample_contact_department | Department of Surgical Oncology
| Sample_contact_institute | University of Tokyo
| Sample_contact_address | 7-3-1, Hongo
| Sample_contact_city | Bunkyo-ku
| Sample_contact_state | Tokyo
| Sample_contact_zip/postal_code | 113-8655
| Sample_contact_country | Japan
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM757nnn/GSM757713/suppl/GSM757713.CEL.gz
| Sample_series_id | GSE30540
| Sample_data_row_count | 54675
| |
|
GSM757714 | GPL570 |
|
Expression data of 31_RCa
|
Patient 31
|
tissue: Colorecal Cancer
|
CIN-low
|
Sample_geo_accession | GSM757714
| Sample_status | Public on Jul 04 2012
| Sample_submission_date | Jul 10 2011
| Sample_last_update_date | Jul 04 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Surgically isolated colorectal cancers were immediately frozen in liquid nitrogen. Tissues were lysed and total RNA was isolated using RNeasy Mini Kit (QIAGEN, Chatswort,CA) according to the manufacturer’s instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Approximately 8 ug of total RNA was processed to produce biotinylated cRNA targets.
| Sample_hyb_protocol | standard Affymetrix procedures
| Sample_scan_protocol | standard Affymetrix procedures
| Sample_data_processing | Rubust Multichip Analysis (RMA)
| Sample_platform_id | GPL570
| Sample_contact_name | Toshiaki,,Watanabe
| Sample_contact_email | toshwatanabe@yahoo.co.jp
| Sample_contact_phone | 81-3-5800-8653
| Sample_contact_fax | 81-3-3811-6822
| Sample_contact_department | Department of Surgical Oncology
| Sample_contact_institute | University of Tokyo
| Sample_contact_address | 7-3-1, Hongo
| Sample_contact_city | Bunkyo-ku
| Sample_contact_state | Tokyo
| Sample_contact_zip/postal_code | 113-8655
| Sample_contact_country | Japan
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM757nnn/GSM757714/suppl/GSM757714.CEL.gz
| Sample_series_id | GSE30540
| Sample_data_row_count | 54675
| |
|
GSM757715 | GPL570 |
|
Expression data of 123_SCa
|
Patient 123
|
tissue: Colorecal Cancer
|
CIN-high
|
Sample_geo_accession | GSM757715
| Sample_status | Public on Jul 04 2012
| Sample_submission_date | Jul 10 2011
| Sample_last_update_date | Jul 04 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Surgically isolated colorectal cancers were immediately frozen in liquid nitrogen. Tissues were lysed and total RNA was isolated using RNeasy Mini Kit (QIAGEN, Chatswort,CA) according to the manufacturer’s instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Approximately 8 ug of total RNA was processed to produce biotinylated cRNA targets.
| Sample_hyb_protocol | standard Affymetrix procedures
| Sample_scan_protocol | standard Affymetrix procedures
| Sample_data_processing | Rubust Multichip Analysis (RMA)
| Sample_platform_id | GPL570
| Sample_contact_name | Toshiaki,,Watanabe
| Sample_contact_email | toshwatanabe@yahoo.co.jp
| Sample_contact_phone | 81-3-5800-8653
| Sample_contact_fax | 81-3-3811-6822
| Sample_contact_department | Department of Surgical Oncology
| Sample_contact_institute | University of Tokyo
| Sample_contact_address | 7-3-1, Hongo
| Sample_contact_city | Bunkyo-ku
| Sample_contact_state | Tokyo
| Sample_contact_zip/postal_code | 113-8655
| Sample_contact_country | Japan
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM757nnn/GSM757715/suppl/GSM757715.CEL.gz
| Sample_series_id | GSE30540
| Sample_data_row_count | 54675
| |
|
GSM757716 | GPL570 |
|
Expression data of 217_ACa
|
Patient 217
|
tissue: Colorecal Cancer
|
CIN-high
|
Sample_geo_accession | GSM757716
| Sample_status | Public on Jul 04 2012
| Sample_submission_date | Jul 10 2011
| Sample_last_update_date | Jul 04 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Surgically isolated colorectal cancers were immediately frozen in liquid nitrogen. Tissues were lysed and total RNA was isolated using RNeasy Mini Kit (QIAGEN, Chatswort,CA) according to the manufacturer’s instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Approximately 8 ug of total RNA was processed to produce biotinylated cRNA targets.
| Sample_hyb_protocol | standard Affymetrix procedures
| Sample_scan_protocol | standard Affymetrix procedures
| Sample_data_processing | Rubust Multichip Analysis (RMA)
| Sample_platform_id | GPL570
| Sample_contact_name | Toshiaki,,Watanabe
| Sample_contact_email | toshwatanabe@yahoo.co.jp
| Sample_contact_phone | 81-3-5800-8653
| Sample_contact_fax | 81-3-3811-6822
| Sample_contact_department | Department of Surgical Oncology
| Sample_contact_institute | University of Tokyo
| Sample_contact_address | 7-3-1, Hongo
| Sample_contact_city | Bunkyo-ku
| Sample_contact_state | Tokyo
| Sample_contact_zip/postal_code | 113-8655
| Sample_contact_country | Japan
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM757nnn/GSM757716/suppl/GSM757716.CEL.gz
| Sample_series_id | GSE30540
| Sample_data_row_count | 54675
| |
|
GSM757717 | GPL570 |
|
Expression data of 258_Ca
|
Patient 258
|
tissue: Colorecal Cancer
|
CIN-high
|
Sample_geo_accession | GSM757717
| Sample_status | Public on Jul 04 2012
| Sample_submission_date | Jul 10 2011
| Sample_last_update_date | Jul 04 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Surgically isolated colorectal cancers were immediately frozen in liquid nitrogen. Tissues were lysed and total RNA was isolated using RNeasy Mini Kit (QIAGEN, Chatswort,CA) according to the manufacturer’s instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Approximately 8 ug of total RNA was processed to produce biotinylated cRNA targets.
| Sample_hyb_protocol | standard Affymetrix procedures
| Sample_scan_protocol | standard Affymetrix procedures
| Sample_data_processing | Rubust Multichip Analysis (RMA)
| Sample_platform_id | GPL570
| Sample_contact_name | Toshiaki,,Watanabe
| Sample_contact_email | toshwatanabe@yahoo.co.jp
| Sample_contact_phone | 81-3-5800-8653
| Sample_contact_fax | 81-3-3811-6822
| Sample_contact_department | Department of Surgical Oncology
| Sample_contact_institute | University of Tokyo
| Sample_contact_address | 7-3-1, Hongo
| Sample_contact_city | Bunkyo-ku
| Sample_contact_state | Tokyo
| Sample_contact_zip/postal_code | 113-8655
| Sample_contact_country | Japan
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM757nnn/GSM757717/suppl/GSM757717.CEL.gz
| Sample_series_id | GSE30540
| Sample_data_row_count | 54675
| |
|
GSM757718 | GPL570 |
|
Expression data of 106_SCa
|
Patient 106
|
tissue: Colorecal Cancer
|
CIN-high
|
Sample_geo_accession | GSM757718
| Sample_status | Public on Jul 04 2012
| Sample_submission_date | Jul 10 2011
| Sample_last_update_date | Jul 04 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Surgically isolated colorectal cancers were immediately frozen in liquid nitrogen. Tissues were lysed and total RNA was isolated using RNeasy Mini Kit (QIAGEN, Chatswort,CA) according to the manufacturer’s instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Approximately 8 ug of total RNA was processed to produce biotinylated cRNA targets.
| Sample_hyb_protocol | standard Affymetrix procedures
| Sample_scan_protocol | standard Affymetrix procedures
| Sample_data_processing | Rubust Multichip Analysis (RMA)
| Sample_platform_id | GPL570
| Sample_contact_name | Toshiaki,,Watanabe
| Sample_contact_email | toshwatanabe@yahoo.co.jp
| Sample_contact_phone | 81-3-5800-8653
| Sample_contact_fax | 81-3-3811-6822
| Sample_contact_department | Department of Surgical Oncology
| Sample_contact_institute | University of Tokyo
| Sample_contact_address | 7-3-1, Hongo
| Sample_contact_city | Bunkyo-ku
| Sample_contact_state | Tokyo
| Sample_contact_zip/postal_code | 113-8655
| Sample_contact_country | Japan
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM757nnn/GSM757718/suppl/GSM757718.CEL.gz
| Sample_series_id | GSE30540
| Sample_data_row_count | 54675
| |
|
GSM757719 | GPL570 |
|
Expression data of 2_Ca
|
Patient 2
|
tissue: Colorecal Cancer
|
CIN-high
|
Sample_geo_accession | GSM757719
| Sample_status | Public on Jul 04 2012
| Sample_submission_date | Jul 10 2011
| Sample_last_update_date | Jul 04 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Surgically isolated colorectal cancers were immediately frozen in liquid nitrogen. Tissues were lysed and total RNA was isolated using RNeasy Mini Kit (QIAGEN, Chatswort,CA) according to the manufacturer’s instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Approximately 8 ug of total RNA was processed to produce biotinylated cRNA targets.
| Sample_hyb_protocol | standard Affymetrix procedures
| Sample_scan_protocol | standard Affymetrix procedures
| Sample_data_processing | Rubust Multichip Analysis (RMA)
| Sample_platform_id | GPL570
| Sample_contact_name | Toshiaki,,Watanabe
| Sample_contact_email | toshwatanabe@yahoo.co.jp
| Sample_contact_phone | 81-3-5800-8653
| Sample_contact_fax | 81-3-3811-6822
| Sample_contact_department | Department of Surgical Oncology
| Sample_contact_institute | University of Tokyo
| Sample_contact_address | 7-3-1, Hongo
| Sample_contact_city | Bunkyo-ku
| Sample_contact_state | Tokyo
| Sample_contact_zip/postal_code | 113-8655
| Sample_contact_country | Japan
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM757nnn/GSM757719/suppl/GSM757719.CEL.gz
| Sample_series_id | GSE30540
| Sample_data_row_count | 54675
| |
|
GSM757720 | GPL570 |
|
Expression data of 128_RCa
|
Patient 128
|
tissue: Colorecal Cancer
|
CIN-high
|
Sample_geo_accession | GSM757720
| Sample_status | Public on Jul 04 2012
| Sample_submission_date | Jul 10 2011
| Sample_last_update_date | Jul 04 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Surgically isolated colorectal cancers were immediately frozen in liquid nitrogen. Tissues were lysed and total RNA was isolated using RNeasy Mini Kit (QIAGEN, Chatswort,CA) according to the manufacturer’s instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Approximately 8 ug of total RNA was processed to produce biotinylated cRNA targets.
| Sample_hyb_protocol | standard Affymetrix procedures
| Sample_scan_protocol | standard Affymetrix procedures
| Sample_data_processing | Rubust Multichip Analysis (RMA)
| Sample_platform_id | GPL570
| Sample_contact_name | Toshiaki,,Watanabe
| Sample_contact_email | toshwatanabe@yahoo.co.jp
| Sample_contact_phone | 81-3-5800-8653
| Sample_contact_fax | 81-3-3811-6822
| Sample_contact_department | Department of Surgical Oncology
| Sample_contact_institute | University of Tokyo
| Sample_contact_address | 7-3-1, Hongo
| Sample_contact_city | Bunkyo-ku
| Sample_contact_state | Tokyo
| Sample_contact_zip/postal_code | 113-8655
| Sample_contact_country | Japan
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM757nnn/GSM757720/suppl/GSM757720.CEL.gz
| Sample_series_id | GSE30540
| Sample_data_row_count | 54675
| |
|
GSM757721 | GPL570 |
|
Expression data of 148_ACa
|
Patient 148
|
tissue: Colorecal Cancer
|
CIN-low
|
Sample_geo_accession | GSM757721
| Sample_status | Public on Jul 04 2012
| Sample_submission_date | Jul 10 2011
| Sample_last_update_date | Jul 04 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Surgically isolated colorectal cancers were immediately frozen in liquid nitrogen. Tissues were lysed and total RNA was isolated using RNeasy Mini Kit (QIAGEN, Chatswort,CA) according to the manufacturer’s instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Approximately 8 ug of total RNA was processed to produce biotinylated cRNA targets.
| Sample_hyb_protocol | standard Affymetrix procedures
| Sample_scan_protocol | standard Affymetrix procedures
| Sample_data_processing | Rubust Multichip Analysis (RMA)
| Sample_platform_id | GPL570
| Sample_contact_name | Toshiaki,,Watanabe
| Sample_contact_email | toshwatanabe@yahoo.co.jp
| Sample_contact_phone | 81-3-5800-8653
| Sample_contact_fax | 81-3-3811-6822
| Sample_contact_department | Department of Surgical Oncology
| Sample_contact_institute | University of Tokyo
| Sample_contact_address | 7-3-1, Hongo
| Sample_contact_city | Bunkyo-ku
| Sample_contact_state | Tokyo
| Sample_contact_zip/postal_code | 113-8655
| Sample_contact_country | Japan
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM757nnn/GSM757721/suppl/GSM757721.CEL.gz
| Sample_series_id | GSE30540
| Sample_data_row_count | 54675
| |
|
GSM757722 | GPL570 |
|
Expression data of 157_Ca
|
Patient 157
|
tissue: Colorecal Cancer
|
CIN-low
|
Sample_geo_accession | GSM757722
| Sample_status | Public on Jul 04 2012
| Sample_submission_date | Jul 10 2011
| Sample_last_update_date | Jul 04 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Surgically isolated colorectal cancers were immediately frozen in liquid nitrogen. Tissues were lysed and total RNA was isolated using RNeasy Mini Kit (QIAGEN, Chatswort,CA) according to the manufacturer’s instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Approximately 8 ug of total RNA was processed to produce biotinylated cRNA targets.
| Sample_hyb_protocol | standard Affymetrix procedures
| Sample_scan_protocol | standard Affymetrix procedures
| Sample_data_processing | Rubust Multichip Analysis (RMA)
| Sample_platform_id | GPL570
| Sample_contact_name | Toshiaki,,Watanabe
| Sample_contact_email | toshwatanabe@yahoo.co.jp
| Sample_contact_phone | 81-3-5800-8653
| Sample_contact_fax | 81-3-3811-6822
| Sample_contact_department | Department of Surgical Oncology
| Sample_contact_institute | University of Tokyo
| Sample_contact_address | 7-3-1, Hongo
| Sample_contact_city | Bunkyo-ku
| Sample_contact_state | Tokyo
| Sample_contact_zip/postal_code | 113-8655
| Sample_contact_country | Japan
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM757nnn/GSM757722/suppl/GSM757722.CEL.gz
| Sample_series_id | GSE30540
| Sample_data_row_count | 54675
| |
|
GSM757723 | GPL570 |
|
Expression data of 169_ACa
|
Patient 169
|
tissue: Colorecal Cancer
|
CIN-low
|
Sample_geo_accession | GSM757723
| Sample_status | Public on Jul 04 2012
| Sample_submission_date | Jul 10 2011
| Sample_last_update_date | Jul 04 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Surgically isolated colorectal cancers were immediately frozen in liquid nitrogen. Tissues were lysed and total RNA was isolated using RNeasy Mini Kit (QIAGEN, Chatswort,CA) according to the manufacturer’s instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Approximately 8 ug of total RNA was processed to produce biotinylated cRNA targets.
| Sample_hyb_protocol | standard Affymetrix procedures
| Sample_scan_protocol | standard Affymetrix procedures
| Sample_data_processing | Rubust Multichip Analysis (RMA)
| Sample_platform_id | GPL570
| Sample_contact_name | Toshiaki,,Watanabe
| Sample_contact_email | toshwatanabe@yahoo.co.jp
| Sample_contact_phone | 81-3-5800-8653
| Sample_contact_fax | 81-3-3811-6822
| Sample_contact_department | Department of Surgical Oncology
| Sample_contact_institute | University of Tokyo
| Sample_contact_address | 7-3-1, Hongo
| Sample_contact_city | Bunkyo-ku
| Sample_contact_state | Tokyo
| Sample_contact_zip/postal_code | 113-8655
| Sample_contact_country | Japan
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM757nnn/GSM757723/suppl/GSM757723.CEL.gz
| Sample_series_id | GSE30540
| Sample_data_row_count | 54675
| |
|
GSM757724 | GPL570 |
|
Expression data of 116_RCa
|
Patient 116
|
tissue: Colorecal Cancer
|
CIN-high
|
Sample_geo_accession | GSM757724
| Sample_status | Public on Jul 04 2012
| Sample_submission_date | Jul 10 2011
| Sample_last_update_date | Jul 04 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Surgically isolated colorectal cancers were immediately frozen in liquid nitrogen. Tissues were lysed and total RNA was isolated using RNeasy Mini Kit (QIAGEN, Chatswort,CA) according to the manufacturer’s instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Approximately 8 ug of total RNA was processed to produce biotinylated cRNA targets.
| Sample_hyb_protocol | standard Affymetrix procedures
| Sample_scan_protocol | standard Affymetrix procedures
| Sample_data_processing | Rubust Multichip Analysis (RMA)
| Sample_platform_id | GPL570
| Sample_contact_name | Toshiaki,,Watanabe
| Sample_contact_email | toshwatanabe@yahoo.co.jp
| Sample_contact_phone | 81-3-5800-8653
| Sample_contact_fax | 81-3-3811-6822
| Sample_contact_department | Department of Surgical Oncology
| Sample_contact_institute | University of Tokyo
| Sample_contact_address | 7-3-1, Hongo
| Sample_contact_city | Bunkyo-ku
| Sample_contact_state | Tokyo
| Sample_contact_zip/postal_code | 113-8655
| Sample_contact_country | Japan
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM757nnn/GSM757724/suppl/GSM757724.CEL.gz
| Sample_series_id | GSE30540
| Sample_data_row_count | 54675
| |
|
GSM757725 | GPL570 |
|
Expression data of 50_Ca
|
Patient 50
|
tissue: Colorecal Cancer
|
CIN-high
|
Sample_geo_accession | GSM757725
| Sample_status | Public on Jul 04 2012
| Sample_submission_date | Jul 10 2011
| Sample_last_update_date | Jul 04 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Surgically isolated colorectal cancers were immediately frozen in liquid nitrogen. Tissues were lysed and total RNA was isolated using RNeasy Mini Kit (QIAGEN, Chatswort,CA) according to the manufacturer’s instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Approximately 8 ug of total RNA was processed to produce biotinylated cRNA targets.
| Sample_hyb_protocol | standard Affymetrix procedures
| Sample_scan_protocol | standard Affymetrix procedures
| Sample_data_processing | Rubust Multichip Analysis (RMA)
| Sample_platform_id | GPL570
| Sample_contact_name | Toshiaki,,Watanabe
| Sample_contact_email | toshwatanabe@yahoo.co.jp
| Sample_contact_phone | 81-3-5800-8653
| Sample_contact_fax | 81-3-3811-6822
| Sample_contact_department | Department of Surgical Oncology
| Sample_contact_institute | University of Tokyo
| Sample_contact_address | 7-3-1, Hongo
| Sample_contact_city | Bunkyo-ku
| Sample_contact_state | Tokyo
| Sample_contact_zip/postal_code | 113-8655
| Sample_contact_country | Japan
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM757nnn/GSM757725/suppl/GSM757725.CEL.gz
| Sample_series_id | GSE30540
| Sample_data_row_count | 54675
| |
|
GSM757726 | GPL570 |
|
Expression data of 5_Ca
|
Patient 5
|
tissue: Colorecal Cancer
|
CIN-high
|
Sample_geo_accession | GSM757726
| Sample_status | Public on Jul 04 2012
| Sample_submission_date | Jul 10 2011
| Sample_last_update_date | Jul 04 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Surgically isolated colorectal cancers were immediately frozen in liquid nitrogen. Tissues were lysed and total RNA was isolated using RNeasy Mini Kit (QIAGEN, Chatswort,CA) according to the manufacturer’s instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Approximately 8 ug of total RNA was processed to produce biotinylated cRNA targets.
| Sample_hyb_protocol | standard Affymetrix procedures
| Sample_scan_protocol | standard Affymetrix procedures
| Sample_data_processing | Rubust Multichip Analysis (RMA)
| Sample_platform_id | GPL570
| Sample_contact_name | Toshiaki,,Watanabe
| Sample_contact_email | toshwatanabe@yahoo.co.jp
| Sample_contact_phone | 81-3-5800-8653
| Sample_contact_fax | 81-3-3811-6822
| Sample_contact_department | Department of Surgical Oncology
| Sample_contact_institute | University of Tokyo
| Sample_contact_address | 7-3-1, Hongo
| Sample_contact_city | Bunkyo-ku
| Sample_contact_state | Tokyo
| Sample_contact_zip/postal_code | 113-8655
| Sample_contact_country | Japan
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM757nnn/GSM757726/suppl/GSM757726.CEL.gz
| Sample_series_id | GSE30540
| Sample_data_row_count | 54675
| |
|
GSM757727 | GPL570 |
|
Expression data of 162_ACa
|
Patient 162
|
tissue: Colorecal Cancer
|
CIN-high
|
Sample_geo_accession | GSM757727
| Sample_status | Public on Jul 04 2012
| Sample_submission_date | Jul 10 2011
| Sample_last_update_date | Jul 04 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Surgically isolated colorectal cancers were immediately frozen in liquid nitrogen. Tissues were lysed and total RNA was isolated using RNeasy Mini Kit (QIAGEN, Chatswort,CA) according to the manufacturer’s instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Approximately 8 ug of total RNA was processed to produce biotinylated cRNA targets.
| Sample_hyb_protocol | standard Affymetrix procedures
| Sample_scan_protocol | standard Affymetrix procedures
| Sample_data_processing | Rubust Multichip Analysis (RMA)
| Sample_platform_id | GPL570
| Sample_contact_name | Toshiaki,,Watanabe
| Sample_contact_email | toshwatanabe@yahoo.co.jp
| Sample_contact_phone | 81-3-5800-8653
| Sample_contact_fax | 81-3-3811-6822
| Sample_contact_department | Department of Surgical Oncology
| Sample_contact_institute | University of Tokyo
| Sample_contact_address | 7-3-1, Hongo
| Sample_contact_city | Bunkyo-ku
| Sample_contact_state | Tokyo
| Sample_contact_zip/postal_code | 113-8655
| Sample_contact_country | Japan
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM757nnn/GSM757727/suppl/GSM757727.CEL.gz
| Sample_series_id | GSE30540
| Sample_data_row_count | 54675
| |
|
GSM757728 | GPL570 |
|
Expression data of 153_Ca
|
Patient 153
|
tissue: Colorecal Cancer
|
CIN-high
|
Sample_geo_accession | GSM757728
| Sample_status | Public on Jul 04 2012
| Sample_submission_date | Jul 10 2011
| Sample_last_update_date | Jul 04 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Surgically isolated colorectal cancers were immediately frozen in liquid nitrogen. Tissues were lysed and total RNA was isolated using RNeasy Mini Kit (QIAGEN, Chatswort,CA) according to the manufacturer’s instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Approximately 8 ug of total RNA was processed to produce biotinylated cRNA targets.
| Sample_hyb_protocol | standard Affymetrix procedures
| Sample_scan_protocol | standard Affymetrix procedures
| Sample_data_processing | Rubust Multichip Analysis (RMA)
| Sample_platform_id | GPL570
| Sample_contact_name | Toshiaki,,Watanabe
| Sample_contact_email | toshwatanabe@yahoo.co.jp
| Sample_contact_phone | 81-3-5800-8653
| Sample_contact_fax | 81-3-3811-6822
| Sample_contact_department | Department of Surgical Oncology
| Sample_contact_institute | University of Tokyo
| Sample_contact_address | 7-3-1, Hongo
| Sample_contact_city | Bunkyo-ku
| Sample_contact_state | Tokyo
| Sample_contact_zip/postal_code | 113-8655
| Sample_contact_country | Japan
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM757nnn/GSM757728/suppl/GSM757728.CEL.gz
| Sample_series_id | GSE30540
| Sample_data_row_count | 54675
| |
|
GSM757729 | GPL570 |
|
Expression data of 227_RCa
|
Patient 227
|
tissue: Colorecal Cancer
|
CIN-high
|
Sample_geo_accession | GSM757729
| Sample_status | Public on Jul 04 2012
| Sample_submission_date | Jul 10 2011
| Sample_last_update_date | Jul 04 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Surgically isolated colorectal cancers were immediately frozen in liquid nitrogen. Tissues were lysed and total RNA was isolated using RNeasy Mini Kit (QIAGEN, Chatswort,CA) according to the manufacturer’s instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Approximately 8 ug of total RNA was processed to produce biotinylated cRNA targets.
| Sample_hyb_protocol | standard Affymetrix procedures
| Sample_scan_protocol | standard Affymetrix procedures
| Sample_data_processing | Rubust Multichip Analysis (RMA)
| Sample_platform_id | GPL570
| Sample_contact_name | Toshiaki,,Watanabe
| Sample_contact_email | toshwatanabe@yahoo.co.jp
| Sample_contact_phone | 81-3-5800-8653
| Sample_contact_fax | 81-3-3811-6822
| Sample_contact_department | Department of Surgical Oncology
| Sample_contact_institute | University of Tokyo
| Sample_contact_address | 7-3-1, Hongo
| Sample_contact_city | Bunkyo-ku
| Sample_contact_state | Tokyo
| Sample_contact_zip/postal_code | 113-8655
| Sample_contact_country | Japan
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM757nnn/GSM757729/suppl/GSM757729.CEL.gz
| Sample_series_id | GSE30540
| Sample_data_row_count | 54675
| |
|
GSM757730 | GPL570 |
|
Expression data of 118_RCa
|
Patient 118
|
tissue: Colorecal Cancer
|
CIN-low
|
Sample_geo_accession | GSM757730
| Sample_status | Public on Jul 04 2012
| Sample_submission_date | Jul 10 2011
| Sample_last_update_date | Jul 04 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Surgically isolated colorectal cancers were immediately frozen in liquid nitrogen. Tissues were lysed and total RNA was isolated using RNeasy Mini Kit (QIAGEN, Chatswort,CA) according to the manufacturer’s instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Approximately 8 ug of total RNA was processed to produce biotinylated cRNA targets.
| Sample_hyb_protocol | standard Affymetrix procedures
| Sample_scan_protocol | standard Affymetrix procedures
| Sample_data_processing | Rubust Multichip Analysis (RMA)
| Sample_platform_id | GPL570
| Sample_contact_name | Toshiaki,,Watanabe
| Sample_contact_email | toshwatanabe@yahoo.co.jp
| Sample_contact_phone | 81-3-5800-8653
| Sample_contact_fax | 81-3-3811-6822
| Sample_contact_department | Department of Surgical Oncology
| Sample_contact_institute | University of Tokyo
| Sample_contact_address | 7-3-1, Hongo
| Sample_contact_city | Bunkyo-ku
| Sample_contact_state | Tokyo
| Sample_contact_zip/postal_code | 113-8655
| Sample_contact_country | Japan
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM757nnn/GSM757730/suppl/GSM757730.CEL.gz
| Sample_series_id | GSE30540
| Sample_data_row_count | 54675
| |
|
GSM757731 | GPL570 |
|
Expression data of 79_Ca_2
|
Patient 79
|
tissue: Colorecal Cancer
|
CIN-high
|
Sample_geo_accession | GSM757731
| Sample_status | Public on Jul 04 2012
| Sample_submission_date | Jul 10 2011
| Sample_last_update_date | Jul 04 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Surgically isolated colorectal cancers were immediately frozen in liquid nitrogen. Tissues were lysed and total RNA was isolated using RNeasy Mini Kit (QIAGEN, Chatswort,CA) according to the manufacturer’s instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Approximately 8 ug of total RNA was processed to produce biotinylated cRNA targets.
| Sample_hyb_protocol | standard Affymetrix procedures
| Sample_scan_protocol | standard Affymetrix procedures
| Sample_data_processing | Rubust Multichip Analysis (RMA)
| Sample_platform_id | GPL570
| Sample_contact_name | Toshiaki,,Watanabe
| Sample_contact_email | toshwatanabe@yahoo.co.jp
| Sample_contact_phone | 81-3-5800-8653
| Sample_contact_fax | 81-3-3811-6822
| Sample_contact_department | Department of Surgical Oncology
| Sample_contact_institute | University of Tokyo
| Sample_contact_address | 7-3-1, Hongo
| Sample_contact_city | Bunkyo-ku
| Sample_contact_state | Tokyo
| Sample_contact_zip/postal_code | 113-8655
| Sample_contact_country | Japan
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM757nnn/GSM757731/suppl/GSM757731.CEL.gz
| Sample_series_id | GSE30540
| Sample_data_row_count | 54675
| |
|
GSM757732 | GPL570 |
|
Expression data of 181_RCa
|
Patient 181
|
tissue: Colorecal Cancer
|
CIN-high
|
Sample_geo_accession | GSM757732
| Sample_status | Public on Jul 04 2012
| Sample_submission_date | Jul 10 2011
| Sample_last_update_date | Jul 04 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Surgically isolated colorectal cancers were immediately frozen in liquid nitrogen. Tissues were lysed and total RNA was isolated using RNeasy Mini Kit (QIAGEN, Chatswort,CA) according to the manufacturer’s instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Approximately 8 ug of total RNA was processed to produce biotinylated cRNA targets.
| Sample_hyb_protocol | standard Affymetrix procedures
| Sample_scan_protocol | standard Affymetrix procedures
| Sample_data_processing | Rubust Multichip Analysis (RMA)
| Sample_platform_id | GPL570
| Sample_contact_name | Toshiaki,,Watanabe
| Sample_contact_email | toshwatanabe@yahoo.co.jp
| Sample_contact_phone | 81-3-5800-8653
| Sample_contact_fax | 81-3-3811-6822
| Sample_contact_department | Department of Surgical Oncology
| Sample_contact_institute | University of Tokyo
| Sample_contact_address | 7-3-1, Hongo
| Sample_contact_city | Bunkyo-ku
| Sample_contact_state | Tokyo
| Sample_contact_zip/postal_code | 113-8655
| Sample_contact_country | Japan
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM757nnn/GSM757732/suppl/GSM757732.CEL.gz
| Sample_series_id | GSE30540
| Sample_data_row_count | 54675
| |
|
GSM757733 | GPL570 |
|
Expression data of 45_ACa
|
Patient 45
|
tissue: Colorecal Cancer
|
CIN-low
|
Sample_geo_accession | GSM757733
| Sample_status | Public on Jul 04 2012
| Sample_submission_date | Jul 10 2011
| Sample_last_update_date | Jul 04 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Surgically isolated colorectal cancers were immediately frozen in liquid nitrogen. Tissues were lysed and total RNA was isolated using RNeasy Mini Kit (QIAGEN, Chatswort,CA) according to the manufacturer’s instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Approximately 8 ug of total RNA was processed to produce biotinylated cRNA targets.
| Sample_hyb_protocol | standard Affymetrix procedures
| Sample_scan_protocol | standard Affymetrix procedures
| Sample_data_processing | Rubust Multichip Analysis (RMA)
| Sample_platform_id | GPL570
| Sample_contact_name | Toshiaki,,Watanabe
| Sample_contact_email | toshwatanabe@yahoo.co.jp
| Sample_contact_phone | 81-3-5800-8653
| Sample_contact_fax | 81-3-3811-6822
| Sample_contact_department | Department of Surgical Oncology
| Sample_contact_institute | University of Tokyo
| Sample_contact_address | 7-3-1, Hongo
| Sample_contact_city | Bunkyo-ku
| Sample_contact_state | Tokyo
| Sample_contact_zip/postal_code | 113-8655
| Sample_contact_country | Japan
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM757nnn/GSM757733/suppl/GSM757733.CEL.gz
| Sample_series_id | GSE30540
| Sample_data_row_count | 54675
| |
|
GSM757734 | GPL570 |
|
Expression data of 218SCa
|
Patient 218
|
tissue: Colorecal Cancer
|
CIN-high
|
Sample_geo_accession | GSM757734
| Sample_status | Public on Jul 04 2012
| Sample_submission_date | Jul 10 2011
| Sample_last_update_date | Jul 04 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Surgically isolated colorectal cancers were immediately frozen in liquid nitrogen. Tissues were lysed and total RNA was isolated using RNeasy Mini Kit (QIAGEN, Chatswort,CA) according to the manufacturer’s instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Approximately 8 ug of total RNA was processed to produce biotinylated cRNA targets.
| Sample_hyb_protocol | standard Affymetrix procedures
| Sample_scan_protocol | standard Affymetrix procedures
| Sample_data_processing | Rubust Multichip Analysis (RMA)
| Sample_platform_id | GPL570
| Sample_contact_name | Toshiaki,,Watanabe
| Sample_contact_email | toshwatanabe@yahoo.co.jp
| Sample_contact_phone | 81-3-5800-8653
| Sample_contact_fax | 81-3-3811-6822
| Sample_contact_department | Department of Surgical Oncology
| Sample_contact_institute | University of Tokyo
| Sample_contact_address | 7-3-1, Hongo
| Sample_contact_city | Bunkyo-ku
| Sample_contact_state | Tokyo
| Sample_contact_zip/postal_code | 113-8655
| Sample_contact_country | Japan
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM757nnn/GSM757734/suppl/GSM757734.CEL.gz
| Sample_series_id | GSE30540
| Sample_data_row_count | 54675
| |
|
GSM757735 | GPL570 |
|
Expression data of 61_ACa
|
Patient 61
|
tissue: Colorecal Cancer
|
CIN-low
|
Sample_geo_accession | GSM757735
| Sample_status | Public on Jul 04 2012
| Sample_submission_date | Jul 10 2011
| Sample_last_update_date | Jul 04 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Surgically isolated colorectal cancers were immediately frozen in liquid nitrogen. Tissues were lysed and total RNA was isolated using RNeasy Mini Kit (QIAGEN, Chatswort,CA) according to the manufacturer’s instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Approximately 8 ug of total RNA was processed to produce biotinylated cRNA targets.
| Sample_hyb_protocol | standard Affymetrix procedures
| Sample_scan_protocol | standard Affymetrix procedures
| Sample_data_processing | Rubust Multichip Analysis (RMA)
| Sample_platform_id | GPL570
| Sample_contact_name | Toshiaki,,Watanabe
| Sample_contact_email | toshwatanabe@yahoo.co.jp
| Sample_contact_phone | 81-3-5800-8653
| Sample_contact_fax | 81-3-3811-6822
| Sample_contact_department | Department of Surgical Oncology
| Sample_contact_institute | University of Tokyo
| Sample_contact_address | 7-3-1, Hongo
| Sample_contact_city | Bunkyo-ku
| Sample_contact_state | Tokyo
| Sample_contact_zip/postal_code | 113-8655
| Sample_contact_country | Japan
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM757nnn/GSM757735/suppl/GSM757735.CEL.gz
| Sample_series_id | GSE30540
| Sample_data_row_count | 54675
| |
|
GSM757736 | GPL570 |
|
Expression data of 73SCa
|
Patient 73
|
tissue: Colorecal Cancer
|
CIN-high
|
Sample_geo_accession | GSM757736
| Sample_status | Public on Jul 04 2012
| Sample_submission_date | Jul 10 2011
| Sample_last_update_date | Jul 04 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Surgically isolated colorectal cancers were immediately frozen in liquid nitrogen. Tissues were lysed and total RNA was isolated using RNeasy Mini Kit (QIAGEN, Chatswort,CA) according to the manufacturer’s instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Approximately 8 ug of total RNA was processed to produce biotinylated cRNA targets.
| Sample_hyb_protocol | standard Affymetrix procedures
| Sample_scan_protocol | standard Affymetrix procedures
| Sample_data_processing | Rubust Multichip Analysis (RMA)
| Sample_platform_id | GPL570
| Sample_contact_name | Toshiaki,,Watanabe
| Sample_contact_email | toshwatanabe@yahoo.co.jp
| Sample_contact_phone | 81-3-5800-8653
| Sample_contact_fax | 81-3-3811-6822
| Sample_contact_department | Department of Surgical Oncology
| Sample_contact_institute | University of Tokyo
| Sample_contact_address | 7-3-1, Hongo
| Sample_contact_city | Bunkyo-ku
| Sample_contact_state | Tokyo
| Sample_contact_zip/postal_code | 113-8655
| Sample_contact_country | Japan
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM757nnn/GSM757736/suppl/GSM757736.CEL.gz
| Sample_series_id | GSE30540
| Sample_data_row_count | 54675
| |
|
GSM757737 | GPL570 |
|
Expression data of 384_RCa
|
Patient 384
|
tissue: Colorecal Cancer
|
CIN-high
|
Sample_geo_accession | GSM757737
| Sample_status | Public on Jul 04 2012
| Sample_submission_date | Jul 10 2011
| Sample_last_update_date | Jul 04 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Surgically isolated colorectal cancers were immediately frozen in liquid nitrogen. Tissues were lysed and total RNA was isolated using RNeasy Mini Kit (QIAGEN, Chatswort,CA) according to the manufacturer’s instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Approximately 8 ug of total RNA was processed to produce biotinylated cRNA targets.
| Sample_hyb_protocol | standard Affymetrix procedures
| Sample_scan_protocol | standard Affymetrix procedures
| Sample_data_processing | Rubust Multichip Analysis (RMA)
| Sample_platform_id | GPL570
| Sample_contact_name | Toshiaki,,Watanabe
| Sample_contact_email | toshwatanabe@yahoo.co.jp
| Sample_contact_phone | 81-3-5800-8653
| Sample_contact_fax | 81-3-3811-6822
| Sample_contact_department | Department of Surgical Oncology
| Sample_contact_institute | University of Tokyo
| Sample_contact_address | 7-3-1, Hongo
| Sample_contact_city | Bunkyo-ku
| Sample_contact_state | Tokyo
| Sample_contact_zip/postal_code | 113-8655
| Sample_contact_country | Japan
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM757nnn/GSM757737/suppl/GSM757737.CEL.gz
| Sample_series_id | GSE30540
| Sample_data_row_count | 54675
| |
|
GSM757738 | GPL570 |
|
Expression data of 215_ACa
|
Patient 215
|
tissue: Colorecal Cancer
|
CIN-high
|
Sample_geo_accession | GSM757738
| Sample_status | Public on Jul 04 2012
| Sample_submission_date | Jul 10 2011
| Sample_last_update_date | Jul 04 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Surgically isolated colorectal cancers were immediately frozen in liquid nitrogen. Tissues were lysed and total RNA was isolated using RNeasy Mini Kit (QIAGEN, Chatswort,CA) according to the manufacturer’s instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Approximately 8 ug of total RNA was processed to produce biotinylated cRNA targets.
| Sample_hyb_protocol | standard Affymetrix procedures
| Sample_scan_protocol | standard Affymetrix procedures
| Sample_data_processing | Rubust Multichip Analysis (RMA)
| Sample_platform_id | GPL570
| Sample_contact_name | Toshiaki,,Watanabe
| Sample_contact_email | toshwatanabe@yahoo.co.jp
| Sample_contact_phone | 81-3-5800-8653
| Sample_contact_fax | 81-3-3811-6822
| Sample_contact_department | Department of Surgical Oncology
| Sample_contact_institute | University of Tokyo
| Sample_contact_address | 7-3-1, Hongo
| Sample_contact_city | Bunkyo-ku
| Sample_contact_state | Tokyo
| Sample_contact_zip/postal_code | 113-8655
| Sample_contact_country | Japan
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM757nnn/GSM757738/suppl/GSM757738.CEL.gz
| Sample_series_id | GSE30540
| Sample_data_row_count | 54675
| |
|
GSM757739 | GPL570 |
|
Expression data of 265_RCa
|
Patient 265
|
tissue: Colorecal Cancer
|
CIN-high
|
Sample_geo_accession | GSM757739
| Sample_status | Public on Jul 04 2012
| Sample_submission_date | Jul 10 2011
| Sample_last_update_date | Jul 04 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Surgically isolated colorectal cancers were immediately frozen in liquid nitrogen. Tissues were lysed and total RNA was isolated using RNeasy Mini Kit (QIAGEN, Chatswort,CA) according to the manufacturer’s instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Approximately 8 ug of total RNA was processed to produce biotinylated cRNA targets.
| Sample_hyb_protocol | standard Affymetrix procedures
| Sample_scan_protocol | standard Affymetrix procedures
| Sample_data_processing | Rubust Multichip Analysis (RMA)
| Sample_platform_id | GPL570
| Sample_contact_name | Toshiaki,,Watanabe
| Sample_contact_email | toshwatanabe@yahoo.co.jp
| Sample_contact_phone | 81-3-5800-8653
| Sample_contact_fax | 81-3-3811-6822
| Sample_contact_department | Department of Surgical Oncology
| Sample_contact_institute | University of Tokyo
| Sample_contact_address | 7-3-1, Hongo
| Sample_contact_city | Bunkyo-ku
| Sample_contact_state | Tokyo
| Sample_contact_zip/postal_code | 113-8655
| Sample_contact_country | Japan
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM757nnn/GSM757739/suppl/GSM757739.CEL.gz
| Sample_series_id | GSE30540
| Sample_data_row_count | 54675
| |
|
GSM757740 | GPL570 |
|
Expression data of 178_Ca
|
Patient 178
|
tissue: Colorecal Cancer
|
CIN-low
|
Sample_geo_accession | GSM757740
| Sample_status | Public on Jul 04 2012
| Sample_submission_date | Jul 10 2011
| Sample_last_update_date | Jul 04 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Surgically isolated colorectal cancers were immediately frozen in liquid nitrogen. Tissues were lysed and total RNA was isolated using RNeasy Mini Kit (QIAGEN, Chatswort,CA) according to the manufacturer’s instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Approximately 8 ug of total RNA was processed to produce biotinylated cRNA targets.
| Sample_hyb_protocol | standard Affymetrix procedures
| Sample_scan_protocol | standard Affymetrix procedures
| Sample_data_processing | Rubust Multichip Analysis (RMA)
| Sample_platform_id | GPL570
| Sample_contact_name | Toshiaki,,Watanabe
| Sample_contact_email | toshwatanabe@yahoo.co.jp
| Sample_contact_phone | 81-3-5800-8653
| Sample_contact_fax | 81-3-3811-6822
| Sample_contact_department | Department of Surgical Oncology
| Sample_contact_institute | University of Tokyo
| Sample_contact_address | 7-3-1, Hongo
| Sample_contact_city | Bunkyo-ku
| Sample_contact_state | Tokyo
| Sample_contact_zip/postal_code | 113-8655
| Sample_contact_country | Japan
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM757nnn/GSM757740/suppl/GSM757740.CEL.gz
| Sample_series_id | GSE30540
| Sample_data_row_count | 54675
| |
|
GSM757741 | GPL570 |
|
Expression data of 158_TCa
|
Patient 158
|
tissue: Colorecal Cancer
|
CIN-low
|
Sample_geo_accession | GSM757741
| Sample_status | Public on Jul 04 2012
| Sample_submission_date | Jul 10 2011
| Sample_last_update_date | Jul 04 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Surgically isolated colorectal cancers were immediately frozen in liquid nitrogen. Tissues were lysed and total RNA was isolated using RNeasy Mini Kit (QIAGEN, Chatswort,CA) according to the manufacturer’s instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Approximately 8 ug of total RNA was processed to produce biotinylated cRNA targets.
| Sample_hyb_protocol | standard Affymetrix procedures
| Sample_scan_protocol | standard Affymetrix procedures
| Sample_data_processing | Rubust Multichip Analysis (RMA)
| Sample_platform_id | GPL570
| Sample_contact_name | Toshiaki,,Watanabe
| Sample_contact_email | toshwatanabe@yahoo.co.jp
| Sample_contact_phone | 81-3-5800-8653
| Sample_contact_fax | 81-3-3811-6822
| Sample_contact_department | Department of Surgical Oncology
| Sample_contact_institute | University of Tokyo
| Sample_contact_address | 7-3-1, Hongo
| Sample_contact_city | Bunkyo-ku
| Sample_contact_state | Tokyo
| Sample_contact_zip/postal_code | 113-8655
| Sample_contact_country | Japan
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM757nnn/GSM757741/suppl/GSM757741.CEL.gz
| Sample_series_id | GSE30540
| Sample_data_row_count | 54675
| |
|
GSM757742 | GPL570 |
|
Expression data of 1_Ca
|
Patient 1
|
tissue: Colorecal Cancer
|
CIN-high
|
Sample_geo_accession | GSM757742
| Sample_status | Public on Jul 04 2012
| Sample_submission_date | Jul 10 2011
| Sample_last_update_date | Jul 04 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Surgically isolated colorectal cancers were immediately frozen in liquid nitrogen. Tissues were lysed and total RNA was isolated using RNeasy Mini Kit (QIAGEN, Chatswort,CA) according to the manufacturer’s instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Approximately 8 ug of total RNA was processed to produce biotinylated cRNA targets.
| Sample_hyb_protocol | standard Affymetrix procedures
| Sample_scan_protocol | standard Affymetrix procedures
| Sample_data_processing | Rubust Multichip Analysis (RMA)
| Sample_platform_id | GPL570
| Sample_contact_name | Toshiaki,,Watanabe
| Sample_contact_email | toshwatanabe@yahoo.co.jp
| Sample_contact_phone | 81-3-5800-8653
| Sample_contact_fax | 81-3-3811-6822
| Sample_contact_department | Department of Surgical Oncology
| Sample_contact_institute | University of Tokyo
| Sample_contact_address | 7-3-1, Hongo
| Sample_contact_city | Bunkyo-ku
| Sample_contact_state | Tokyo
| Sample_contact_zip/postal_code | 113-8655
| Sample_contact_country | Japan
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM757nnn/GSM757742/suppl/GSM757742.CEL.gz
| Sample_series_id | GSE30540
| Sample_data_row_count | 54675
| |
|
GSM757743 | GPL570 |
|
Expression data of 180_SCa
|
Patient 180
|
tissue: Colorecal Cancer
|
CIN-high
|
Sample_geo_accession | GSM757743
| Sample_status | Public on Jul 04 2012
| Sample_submission_date | Jul 10 2011
| Sample_last_update_date | Jul 04 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Surgically isolated colorectal cancers were immediately frozen in liquid nitrogen. Tissues were lysed and total RNA was isolated using RNeasy Mini Kit (QIAGEN, Chatswort,CA) according to the manufacturer’s instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Approximately 8 ug of total RNA was processed to produce biotinylated cRNA targets.
| Sample_hyb_protocol | standard Affymetrix procedures
| Sample_scan_protocol | standard Affymetrix procedures
| Sample_data_processing | Rubust Multichip Analysis (RMA)
| Sample_platform_id | GPL570
| Sample_contact_name | Toshiaki,,Watanabe
| Sample_contact_email | toshwatanabe@yahoo.co.jp
| Sample_contact_phone | 81-3-5800-8653
| Sample_contact_fax | 81-3-3811-6822
| Sample_contact_department | Department of Surgical Oncology
| Sample_contact_institute | University of Tokyo
| Sample_contact_address | 7-3-1, Hongo
| Sample_contact_city | Bunkyo-ku
| Sample_contact_state | Tokyo
| Sample_contact_zip/postal_code | 113-8655
| Sample_contact_country | Japan
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM757nnn/GSM757743/suppl/GSM757743.CEL.gz
| Sample_series_id | GSE30540
| Sample_data_row_count | 54675
| |
|
GSM757744 | GPL570 |
|
Expression data of 185_Ca
|
Patient 185
|
tissue: Colorecal Cancer
|
CIN-high
|
Sample_geo_accession | GSM757744
| Sample_status | Public on Jul 04 2012
| Sample_submission_date | Jul 10 2011
| Sample_last_update_date | Jul 04 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Surgically isolated colorectal cancers were immediately frozen in liquid nitrogen. Tissues were lysed and total RNA was isolated using RNeasy Mini Kit (QIAGEN, Chatswort,CA) according to the manufacturer’s instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Approximately 8 ug of total RNA was processed to produce biotinylated cRNA targets.
| Sample_hyb_protocol | standard Affymetrix procedures
| Sample_scan_protocol | standard Affymetrix procedures
| Sample_data_processing | Rubust Multichip Analysis (RMA)
| Sample_platform_id | GPL570
| Sample_contact_name | Toshiaki,,Watanabe
| Sample_contact_email | toshwatanabe@yahoo.co.jp
| Sample_contact_phone | 81-3-5800-8653
| Sample_contact_fax | 81-3-3811-6822
| Sample_contact_department | Department of Surgical Oncology
| Sample_contact_institute | University of Tokyo
| Sample_contact_address | 7-3-1, Hongo
| Sample_contact_city | Bunkyo-ku
| Sample_contact_state | Tokyo
| Sample_contact_zip/postal_code | 113-8655
| Sample_contact_country | Japan
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM757nnn/GSM757744/suppl/GSM757744.CEL.gz
| Sample_series_id | GSE30540
| Sample_data_row_count | 54675
| |
|
GSM757745 | GPL570 |
|
Expression data of 60_RCa
|
Patient 60
|
tissue: Colorecal Cancer
|
CIN-high
|
Sample_geo_accession | GSM757745
| Sample_status | Public on Jul 04 2012
| Sample_submission_date | Jul 10 2011
| Sample_last_update_date | Jul 04 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Surgically isolated colorectal cancers were immediately frozen in liquid nitrogen. Tissues were lysed and total RNA was isolated using RNeasy Mini Kit (QIAGEN, Chatswort,CA) according to the manufacturer’s instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Approximately 8 ug of total RNA was processed to produce biotinylated cRNA targets.
| Sample_hyb_protocol | standard Affymetrix procedures
| Sample_scan_protocol | standard Affymetrix procedures
| Sample_data_processing | Rubust Multichip Analysis (RMA)
| Sample_platform_id | GPL570
| Sample_contact_name | Toshiaki,,Watanabe
| Sample_contact_email | toshwatanabe@yahoo.co.jp
| Sample_contact_phone | 81-3-5800-8653
| Sample_contact_fax | 81-3-3811-6822
| Sample_contact_department | Department of Surgical Oncology
| Sample_contact_institute | University of Tokyo
| Sample_contact_address | 7-3-1, Hongo
| Sample_contact_city | Bunkyo-ku
| Sample_contact_state | Tokyo
| Sample_contact_zip/postal_code | 113-8655
| Sample_contact_country | Japan
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM757nnn/GSM757745/suppl/GSM757745.CEL.gz
| Sample_series_id | GSE30540
| Sample_data_row_count | 54675
| |
|
GSM757746 | GPL570 |
|
Expression data of 46_RCa
|
Patient 46
|
tissue: Colorecal Cancer
|
CIN-low
|
Sample_geo_accession | GSM757746
| Sample_status | Public on Jul 04 2012
| Sample_submission_date | Jul 10 2011
| Sample_last_update_date | Jul 04 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Surgically isolated colorectal cancers were immediately frozen in liquid nitrogen. Tissues were lysed and total RNA was isolated using RNeasy Mini Kit (QIAGEN, Chatswort,CA) according to the manufacturer’s instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Approximately 8 ug of total RNA was processed to produce biotinylated cRNA targets.
| Sample_hyb_protocol | standard Affymetrix procedures
| Sample_scan_protocol | standard Affymetrix procedures
| Sample_data_processing | Rubust Multichip Analysis (RMA)
| Sample_platform_id | GPL570
| Sample_contact_name | Toshiaki,,Watanabe
| Sample_contact_email | toshwatanabe@yahoo.co.jp
| Sample_contact_phone | 81-3-5800-8653
| Sample_contact_fax | 81-3-3811-6822
| Sample_contact_department | Department of Surgical Oncology
| Sample_contact_institute | University of Tokyo
| Sample_contact_address | 7-3-1, Hongo
| Sample_contact_city | Bunkyo-ku
| Sample_contact_state | Tokyo
| Sample_contact_zip/postal_code | 113-8655
| Sample_contact_country | Japan
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM757nnn/GSM757746/suppl/GSM757746.CEL.gz
| Sample_series_id | GSE30540
| Sample_data_row_count | 54675
| |
|
GSM757747 | GPL570 |
|
Expression data of 145_ACa
|
Patient 145
|
tissue: Colorecal Cancer
|
CIN-high
|
Sample_geo_accession | GSM757747
| Sample_status | Public on Jul 04 2012
| Sample_submission_date | Jul 10 2011
| Sample_last_update_date | Jul 04 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Surgically isolated colorectal cancers were immediately frozen in liquid nitrogen. Tissues were lysed and total RNA was isolated using RNeasy Mini Kit (QIAGEN, Chatswort,CA) according to the manufacturer’s instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Approximately 8 ug of total RNA was processed to produce biotinylated cRNA targets.
| Sample_hyb_protocol | standard Affymetrix procedures
| Sample_scan_protocol | standard Affymetrix procedures
| Sample_data_processing | Rubust Multichip Analysis (RMA)
| Sample_platform_id | GPL570
| Sample_contact_name | Toshiaki,,Watanabe
| Sample_contact_email | toshwatanabe@yahoo.co.jp
| Sample_contact_phone | 81-3-5800-8653
| Sample_contact_fax | 81-3-3811-6822
| Sample_contact_department | Department of Surgical Oncology
| Sample_contact_institute | University of Tokyo
| Sample_contact_address | 7-3-1, Hongo
| Sample_contact_city | Bunkyo-ku
| Sample_contact_state | Tokyo
| Sample_contact_zip/postal_code | 113-8655
| Sample_contact_country | Japan
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM757nnn/GSM757747/suppl/GSM757747.CEL.gz
| Sample_series_id | GSE30540
| Sample_data_row_count | 54675
| |
|
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Make groups for comparisons ![](/q11.jpeg) |
(2 groups will be compared at a time) |
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Select GSMs and click on "Add groups" |
Enter the group name here: |
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