Search results for the GEO ID: GSE30668  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM760646 | GPL1355 |
|
anti-sense GH transgene, biological rep1
|
heterozygous transgenic dwarf rats bearing an anti-sense GH transgene fed ad libitum
|
tissue: white adipose tissue
genotype: Jcl:Wistar (-/-) rat
age: 24 weeks
|
HA_050630_1
|
| Sample_geo_accession | GSM760646
| | Sample_status | Public on Sep 27 2012
| | Sample_submission_date | Jul 14 2011
| | Sample_last_update_date | Sep 27 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | All rats were provided food 30 minutes prior to turning off the lights in the evening and were sacrificed after turning on the lights in the following morning.
| | Sample_growth_protocol_ch1 | From six weeks of age, (-/-) rats were divided into two groups: ad libitum (AL) and CR (70% of the energy intake). AL, CR and Tg rats were sacrificed at 24 weeks of age.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated from the epididymal WAT using TRIZOL (Life Technologies).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | standard Affymetrix protocol
| | Sample_hyb_protocol | standard Affymetrix protocol
| | Sample_scan_protocol | standard Affymetrix protocol
| | Sample_data_processing | PM data of CEL file was parametrically normalized, and expression levels at each gene was estimated by trimmed means of the normalized PM data (Konishi (2008), Statistical Applications in Genetics and Molecular Biology: Vol. 7: Iss. 1, Article 25.) The normalized probe-level PM data is available as a supplementary txt file for each Sample, where the columns of data represent the probes 1-12 in same order to that of the chip's CDF file.
| | Sample_data_processing | A pseudo data was then derived in a form of antilog of the z-scores; the center of the pseudo data was 256. The pseudo data, ABS_CALL, and the normalized data (z-scores) are presented in the matrix form.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Tomokazu,,Konishi
| | Sample_contact_email | konishi@akita-pu.ac.jp
| | Sample_contact_phone | +81-18-872-1603
| | Sample_contact_fax | +81-18-872-1677
| | Sample_contact_laboratory | Molecular Genetics
| | Sample_contact_department | Bioresource Sciences
| | Sample_contact_institute | Akita Prefectural University
| | Sample_contact_address | Shimoshinjyo Nishi
| | Sample_contact_city | Akita
| | Sample_contact_state | Akita
| | Sample_contact_zip/postal_code | 010-0195
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM760nnn/GSM760646/suppl/GSM760646.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM760nnn/GSM760646/suppl/GSM760646.txt.gz
| | Sample_series_id | GSE30668
| | Sample_data_row_count | 31099
| | |
|
GSM760647 | GPL1355 |
|
anti-sense GH transgene, biological rep2
|
heterozygous transgenic dwarf rats bearing an anti-sense GH transgene fed ad libitum
|
tissue: white adipose tissue
genotype: Jcl:Wistar (-/-) rat
age: 24 weeks
|
HA_050630_2
|
| Sample_geo_accession | GSM760647
| | Sample_status | Public on Sep 27 2012
| | Sample_submission_date | Jul 14 2011
| | Sample_last_update_date | Sep 27 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | All rats were provided food 30 minutes prior to turning off the lights in the evening and were sacrificed after turning on the lights in the following morning.
| | Sample_growth_protocol_ch1 | From six weeks of age, (-/-) rats were divided into two groups: ad libitum (AL) and CR (70% of the energy intake). AL, CR and Tg rats were sacrificed at 24 weeks of age.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated from the epididymal WAT using TRIZOL (Life Technologies).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | standard Affymetrix protocol
| | Sample_hyb_protocol | standard Affymetrix protocol
| | Sample_scan_protocol | standard Affymetrix protocol
| | Sample_data_processing | PM data of CEL file was parametrically normalized, and expression levels at each gene was estimated by trimmed means of the normalized PM data (Konishi (2008), Statistical Applications in Genetics and Molecular Biology: Vol. 7: Iss. 1, Article 25.) The normalized probe-level PM data is available as a supplementary txt file for each Sample, where the columns of data represent the probes 1-12 in same order to that of the chip's CDF file.
| | Sample_data_processing | A pseudo data was then derived in a form of antilog of the z-scores; the center of the pseudo data was 256. The pseudo data, ABS_CALL, and the normalized data (z-scores) are presented in the matrix form.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Tomokazu,,Konishi
| | Sample_contact_email | konishi@akita-pu.ac.jp
| | Sample_contact_phone | +81-18-872-1603
| | Sample_contact_fax | +81-18-872-1677
| | Sample_contact_laboratory | Molecular Genetics
| | Sample_contact_department | Bioresource Sciences
| | Sample_contact_institute | Akita Prefectural University
| | Sample_contact_address | Shimoshinjyo Nishi
| | Sample_contact_city | Akita
| | Sample_contact_state | Akita
| | Sample_contact_zip/postal_code | 010-0195
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM760nnn/GSM760647/suppl/GSM760647.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM760nnn/GSM760647/suppl/GSM760647.txt.gz
| | Sample_series_id | GSE30668
| | Sample_data_row_count | 31099
| | |
|
GSM760648 | GPL1355 |
|
anti-sense GH transgene, biological rep3
|
heterozygous transgenic dwarf rats bearing an anti-sense GH transgene fed ad libitum
|
tissue: white adipose tissue
genotype: Jcl:Wistar (-/-) rat
age: 24 weeks
|
HA_050630_3
|
| Sample_geo_accession | GSM760648
| | Sample_status | Public on Sep 27 2012
| | Sample_submission_date | Jul 14 2011
| | Sample_last_update_date | Sep 27 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | All rats were provided food 30 minutes prior to turning off the lights in the evening and were sacrificed after turning on the lights in the following morning.
| | Sample_growth_protocol_ch1 | From six weeks of age, (-/-) rats were divided into two groups: ad libitum (AL) and CR (70% of the energy intake). AL, CR and Tg rats were sacrificed at 24 weeks of age.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated from the epididymal WAT using TRIZOL (Life Technologies).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | standard Affymetrix protocol
| | Sample_hyb_protocol | standard Affymetrix protocol
| | Sample_scan_protocol | standard Affymetrix protocol
| | Sample_data_processing | PM data of CEL file was parametrically normalized, and expression levels at each gene was estimated by trimmed means of the normalized PM data (Konishi (2008), Statistical Applications in Genetics and Molecular Biology: Vol. 7: Iss. 1, Article 25.) The normalized probe-level PM data is available as a supplementary txt file for each Sample, where the columns of data represent the probes 1-12 in same order to that of the chip's CDF file.
| | Sample_data_processing | A pseudo data was then derived in a form of antilog of the z-scores; the center of the pseudo data was 256. The pseudo data, ABS_CALL, and the normalized data (z-scores) are presented in the matrix form.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Tomokazu,,Konishi
| | Sample_contact_email | konishi@akita-pu.ac.jp
| | Sample_contact_phone | +81-18-872-1603
| | Sample_contact_fax | +81-18-872-1677
| | Sample_contact_laboratory | Molecular Genetics
| | Sample_contact_department | Bioresource Sciences
| | Sample_contact_institute | Akita Prefectural University
| | Sample_contact_address | Shimoshinjyo Nishi
| | Sample_contact_city | Akita
| | Sample_contact_state | Akita
| | Sample_contact_zip/postal_code | 010-0195
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM760nnn/GSM760648/suppl/GSM760648.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM760nnn/GSM760648/suppl/GSM760648.txt.gz
| | Sample_series_id | GSE30668
| | Sample_data_row_count | 31099
| | |
|
GSM760649 | GPL1355 |
|
anti-sense GH transgene, biological rep4
|
heterozygous transgenic dwarf rats bearing an anti-sense GH transgene fed ad libitum
|
tissue: white adipose tissue
genotype: Jcl:Wistar (-/-) rat
age: 24 weeks
|
HA_050630_4
|
| Sample_geo_accession | GSM760649
| | Sample_status | Public on Sep 27 2012
| | Sample_submission_date | Jul 14 2011
| | Sample_last_update_date | Sep 27 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | All rats were provided food 30 minutes prior to turning off the lights in the evening and were sacrificed after turning on the lights in the following morning.
| | Sample_growth_protocol_ch1 | From six weeks of age, (-/-) rats were divided into two groups: ad libitum (AL) and CR (70% of the energy intake). AL, CR and Tg rats were sacrificed at 24 weeks of age.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated from the epididymal WAT using TRIZOL (Life Technologies).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | standard Affymetrix protocol
| | Sample_hyb_protocol | standard Affymetrix protocol
| | Sample_scan_protocol | standard Affymetrix protocol
| | Sample_data_processing | PM data of CEL file was parametrically normalized, and expression levels at each gene was estimated by trimmed means of the normalized PM data (Konishi (2008), Statistical Applications in Genetics and Molecular Biology: Vol. 7: Iss. 1, Article 25.) The normalized probe-level PM data is available as a supplementary txt file for each Sample, where the columns of data represent the probes 1-12 in same order to that of the chip's CDF file.
| | Sample_data_processing | A pseudo data was then derived in a form of antilog of the z-scores; the center of the pseudo data was 256. The pseudo data, ABS_CALL, and the normalized data (z-scores) are presented in the matrix form.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Tomokazu,,Konishi
| | Sample_contact_email | konishi@akita-pu.ac.jp
| | Sample_contact_phone | +81-18-872-1603
| | Sample_contact_fax | +81-18-872-1677
| | Sample_contact_laboratory | Molecular Genetics
| | Sample_contact_department | Bioresource Sciences
| | Sample_contact_institute | Akita Prefectural University
| | Sample_contact_address | Shimoshinjyo Nishi
| | Sample_contact_city | Akita
| | Sample_contact_state | Akita
| | Sample_contact_zip/postal_code | 010-0195
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM760nnn/GSM760649/suppl/GSM760649.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM760nnn/GSM760649/suppl/GSM760649.txt.gz
| | Sample_series_id | GSE30668
| | Sample_data_row_count | 31099
| | |
|
GSM760650 | GPL1355 |
|
ad libitum, biological rep1
|
wild Wistar rats fed ad libitum
|
tissue: white adipose tissue
genotype: Jcl:Wistar (-/-) rat
age: 24 weeks
|
WA_050623_1
|
| Sample_geo_accession | GSM760650
| | Sample_status | Public on Sep 27 2012
| | Sample_submission_date | Jul 14 2011
| | Sample_last_update_date | Sep 27 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | All rats were provided food 30 minutes prior to turning off the lights in the evening and were sacrificed after turning on the lights in the following morning.
| | Sample_growth_protocol_ch1 | From six weeks of age, (-/-) rats were divided into two groups: ad libitum (AL) and CR (70% of the energy intake). AL, CR and Tg rats were sacrificed at 24 weeks of age.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated from the epididymal WAT using TRIZOL (Life Technologies).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | standard Affymetrix protocol
| | Sample_hyb_protocol | standard Affymetrix protocol
| | Sample_scan_protocol | standard Affymetrix protocol
| | Sample_data_processing | PM data of CEL file was parametrically normalized, and expression levels at each gene was estimated by trimmed means of the normalized PM data (Konishi (2008), Statistical Applications in Genetics and Molecular Biology: Vol. 7: Iss. 1, Article 25.) The normalized probe-level PM data is available as a supplementary txt file for each Sample, where the columns of data represent the probes 1-12 in same order to that of the chip's CDF file.
| | Sample_data_processing | A pseudo data was then derived in a form of antilog of the z-scores; the center of the pseudo data was 256. The pseudo data, ABS_CALL, and the normalized data (z-scores) are presented in the matrix form.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Tomokazu,,Konishi
| | Sample_contact_email | konishi@akita-pu.ac.jp
| | Sample_contact_phone | +81-18-872-1603
| | Sample_contact_fax | +81-18-872-1677
| | Sample_contact_laboratory | Molecular Genetics
| | Sample_contact_department | Bioresource Sciences
| | Sample_contact_institute | Akita Prefectural University
| | Sample_contact_address | Shimoshinjyo Nishi
| | Sample_contact_city | Akita
| | Sample_contact_state | Akita
| | Sample_contact_zip/postal_code | 010-0195
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM760nnn/GSM760650/suppl/GSM760650.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM760nnn/GSM760650/suppl/GSM760650.txt.gz
| | Sample_series_id | GSE30668
| | Sample_data_row_count | 31099
| | |
|
GSM760651 | GPL1355 |
|
ad libitum, biological rep2
|
wild Wistar rats fed ad libitum
|
tissue: white adipose tissue
genotype: Jcl:Wistar (-/-) rat
age: 24 weeks
|
WA_050623_2
|
| Sample_geo_accession | GSM760651
| | Sample_status | Public on Sep 27 2012
| | Sample_submission_date | Jul 14 2011
| | Sample_last_update_date | Sep 27 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | All rats were provided food 30 minutes prior to turning off the lights in the evening and were sacrificed after turning on the lights in the following morning.
| | Sample_growth_protocol_ch1 | From six weeks of age, (-/-) rats were divided into two groups: ad libitum (AL) and CR (70% of the energy intake). AL, CR and Tg rats were sacrificed at 24 weeks of age.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated from the epididymal WAT using TRIZOL (Life Technologies).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | standard Affymetrix protocol
| | Sample_hyb_protocol | standard Affymetrix protocol
| | Sample_scan_protocol | standard Affymetrix protocol
| | Sample_data_processing | PM data of CEL file was parametrically normalized, and expression levels at each gene was estimated by trimmed means of the normalized PM data (Konishi (2008), Statistical Applications in Genetics and Molecular Biology: Vol. 7: Iss. 1, Article 25.) The normalized probe-level PM data is available as a supplementary txt file for each Sample, where the columns of data represent the probes 1-12 in same order to that of the chip's CDF file.
| | Sample_data_processing | A pseudo data was then derived in a form of antilog of the z-scores; the center of the pseudo data was 256. The pseudo data, ABS_CALL, and the normalized data (z-scores) are presented in the matrix form.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Tomokazu,,Konishi
| | Sample_contact_email | konishi@akita-pu.ac.jp
| | Sample_contact_phone | +81-18-872-1603
| | Sample_contact_fax | +81-18-872-1677
| | Sample_contact_laboratory | Molecular Genetics
| | Sample_contact_department | Bioresource Sciences
| | Sample_contact_institute | Akita Prefectural University
| | Sample_contact_address | Shimoshinjyo Nishi
| | Sample_contact_city | Akita
| | Sample_contact_state | Akita
| | Sample_contact_zip/postal_code | 010-0195
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM760nnn/GSM760651/suppl/GSM760651.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM760nnn/GSM760651/suppl/GSM760651.txt.gz
| | Sample_series_id | GSE30668
| | Sample_data_row_count | 31099
| | |
|
GSM760652 | GPL1355 |
|
ad libitum, biological rep3
|
wild Wistar rats fed ad libitum
|
tissue: white adipose tissue
genotype: Jcl:Wistar (-/-) rat
age: 24 weeks
|
WA_050623_3
|
| Sample_geo_accession | GSM760652
| | Sample_status | Public on Sep 27 2012
| | Sample_submission_date | Jul 14 2011
| | Sample_last_update_date | Sep 27 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | All rats were provided food 30 minutes prior to turning off the lights in the evening and were sacrificed after turning on the lights in the following morning.
| | Sample_growth_protocol_ch1 | From six weeks of age, (-/-) rats were divided into two groups: ad libitum (AL) and CR (70% of the energy intake). AL, CR and Tg rats were sacrificed at 24 weeks of age.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated from the epididymal WAT using TRIZOL (Life Technologies).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | standard Affymetrix protocol
| | Sample_hyb_protocol | standard Affymetrix protocol
| | Sample_scan_protocol | standard Affymetrix protocol
| | Sample_data_processing | PM data of CEL file was parametrically normalized, and expression levels at each gene was estimated by trimmed means of the normalized PM data (Konishi (2008), Statistical Applications in Genetics and Molecular Biology: Vol. 7: Iss. 1, Article 25.) The normalized probe-level PM data is available as a supplementary txt file for each Sample, where the columns of data represent the probes 1-12 in same order to that of the chip's CDF file.
| | Sample_data_processing | A pseudo data was then derived in a form of antilog of the z-scores; the center of the pseudo data was 256. The pseudo data, ABS_CALL, and the normalized data (z-scores) are presented in the matrix form.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Tomokazu,,Konishi
| | Sample_contact_email | konishi@akita-pu.ac.jp
| | Sample_contact_phone | +81-18-872-1603
| | Sample_contact_fax | +81-18-872-1677
| | Sample_contact_laboratory | Molecular Genetics
| | Sample_contact_department | Bioresource Sciences
| | Sample_contact_institute | Akita Prefectural University
| | Sample_contact_address | Shimoshinjyo Nishi
| | Sample_contact_city | Akita
| | Sample_contact_state | Akita
| | Sample_contact_zip/postal_code | 010-0195
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM760nnn/GSM760652/suppl/GSM760652.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM760nnn/GSM760652/suppl/GSM760652.txt.gz
| | Sample_series_id | GSE30668
| | Sample_data_row_count | 31099
| | |
|
GSM760653 | GPL1355 |
|
ad libitum, biological rep4
|
wild Wistar rats fed ad libitum
|
tissue: white adipose tissue
genotype: Jcl:Wistar (-/-) rat
age: 24 weeks
|
WA_050623_4
|
| Sample_geo_accession | GSM760653
| | Sample_status | Public on Sep 27 2012
| | Sample_submission_date | Jul 14 2011
| | Sample_last_update_date | Sep 27 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | All rats were provided food 30 minutes prior to turning off the lights in the evening and were sacrificed after turning on the lights in the following morning.
| | Sample_growth_protocol_ch1 | From six weeks of age, (-/-) rats were divided into two groups: ad libitum (AL) and CR (70% of the energy intake). AL, CR and Tg rats were sacrificed at 24 weeks of age.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated from the epididymal WAT using TRIZOL (Life Technologies).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | standard Affymetrix protocol
| | Sample_hyb_protocol | standard Affymetrix protocol
| | Sample_scan_protocol | standard Affymetrix protocol
| | Sample_data_processing | PM data of CEL file was parametrically normalized, and expression levels at each gene was estimated by trimmed means of the normalized PM data (Konishi (2008), Statistical Applications in Genetics and Molecular Biology: Vol. 7: Iss. 1, Article 25.) The normalized probe-level PM data is available as a supplementary txt file for each Sample, where the columns of data represent the probes 1-12 in same order to that of the chip's CDF file.
| | Sample_data_processing | A pseudo data was then derived in a form of antilog of the z-scores; the center of the pseudo data was 256. The pseudo data, ABS_CALL, and the normalized data (z-scores) are presented in the matrix form.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Tomokazu,,Konishi
| | Sample_contact_email | konishi@akita-pu.ac.jp
| | Sample_contact_phone | +81-18-872-1603
| | Sample_contact_fax | +81-18-872-1677
| | Sample_contact_laboratory | Molecular Genetics
| | Sample_contact_department | Bioresource Sciences
| | Sample_contact_institute | Akita Prefectural University
| | Sample_contact_address | Shimoshinjyo Nishi
| | Sample_contact_city | Akita
| | Sample_contact_state | Akita
| | Sample_contact_zip/postal_code | 010-0195
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM760nnn/GSM760653/suppl/GSM760653.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM760nnn/GSM760653/suppl/GSM760653.txt.gz
| | Sample_series_id | GSE30668
| | Sample_data_row_count | 31099
| | |
|
GSM760654 | GPL1355 |
|
caloric restriction, biological rep1
|
wild Wistar rats, caloric restriction to 70% of the energy intake
|
tissue: white adipose tissue
genotype: Jcl:Wistar (-/-) rat
age: 24 weeks
|
WC_050625_1
|
| Sample_geo_accession | GSM760654
| | Sample_status | Public on Sep 27 2012
| | Sample_submission_date | Jul 14 2011
| | Sample_last_update_date | Sep 27 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | All rats were provided food 30 minutes prior to turning off the lights in the evening and were sacrificed after turning on the lights in the following morning.
| | Sample_growth_protocol_ch1 | From six weeks of age, (-/-) rats were divided into two groups: ad libitum (AL) and CR (70% of the energy intake). AL, CR and Tg rats were sacrificed at 24 weeks of age.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated from the epididymal WAT using TRIZOL (Life Technologies).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | standard Affymetrix protocol
| | Sample_hyb_protocol | standard Affymetrix protocol
| | Sample_scan_protocol | standard Affymetrix protocol
| | Sample_data_processing | PM data of CEL file was parametrically normalized, and expression levels at each gene was estimated by trimmed means of the normalized PM data (Konishi (2008), Statistical Applications in Genetics and Molecular Biology: Vol. 7: Iss. 1, Article 25.) The normalized probe-level PM data is available as a supplementary txt file for each Sample, where the columns of data represent the probes 1-12 in same order to that of the chip's CDF file.
| | Sample_data_processing | A pseudo data was then derived in a form of antilog of the z-scores; the center of the pseudo data was 256. The pseudo data, ABS_CALL, and the normalized data (z-scores) are presented in the matrix form.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Tomokazu,,Konishi
| | Sample_contact_email | konishi@akita-pu.ac.jp
| | Sample_contact_phone | +81-18-872-1603
| | Sample_contact_fax | +81-18-872-1677
| | Sample_contact_laboratory | Molecular Genetics
| | Sample_contact_department | Bioresource Sciences
| | Sample_contact_institute | Akita Prefectural University
| | Sample_contact_address | Shimoshinjyo Nishi
| | Sample_contact_city | Akita
| | Sample_contact_state | Akita
| | Sample_contact_zip/postal_code | 010-0195
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM760nnn/GSM760654/suppl/GSM760654.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM760nnn/GSM760654/suppl/GSM760654.txt.gz
| | Sample_series_id | GSE30668
| | Sample_data_row_count | 31099
| | |
|
GSM760655 | GPL1355 |
|
caloric restriction, biological rep2
|
wild Wistar rats, caloric restriction to 70% of the energy intake
|
tissue: white adipose tissue
genotype: Jcl:Wistar (-/-) rat
age: 24 weeks
|
WC_050625_2
|
| Sample_geo_accession | GSM760655
| | Sample_status | Public on Sep 27 2012
| | Sample_submission_date | Jul 14 2011
| | Sample_last_update_date | Sep 27 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | All rats were provided food 30 minutes prior to turning off the lights in the evening and were sacrificed after turning on the lights in the following morning.
| | Sample_growth_protocol_ch1 | From six weeks of age, (-/-) rats were divided into two groups: ad libitum (AL) and CR (70% of the energy intake). AL, CR and Tg rats were sacrificed at 24 weeks of age.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated from the epididymal WAT using TRIZOL (Life Technologies).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | standard Affymetrix protocol
| | Sample_hyb_protocol | standard Affymetrix protocol
| | Sample_scan_protocol | standard Affymetrix protocol
| | Sample_data_processing | PM data of CEL file was parametrically normalized, and expression levels at each gene was estimated by trimmed means of the normalized PM data (Konishi (2008), Statistical Applications in Genetics and Molecular Biology: Vol. 7: Iss. 1, Article 25.) The normalized probe-level PM data is available as a supplementary txt file for each Sample, where the columns of data represent the probes 1-12 in same order to that of the chip's CDF file.
| | Sample_data_processing | A pseudo data was then derived in a form of antilog of the z-scores; the center of the pseudo data was 256. The pseudo data, ABS_CALL, and the normalized data (z-scores) are presented in the matrix form.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Tomokazu,,Konishi
| | Sample_contact_email | konishi@akita-pu.ac.jp
| | Sample_contact_phone | +81-18-872-1603
| | Sample_contact_fax | +81-18-872-1677
| | Sample_contact_laboratory | Molecular Genetics
| | Sample_contact_department | Bioresource Sciences
| | Sample_contact_institute | Akita Prefectural University
| | Sample_contact_address | Shimoshinjyo Nishi
| | Sample_contact_city | Akita
| | Sample_contact_state | Akita
| | Sample_contact_zip/postal_code | 010-0195
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM760nnn/GSM760655/suppl/GSM760655.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM760nnn/GSM760655/suppl/GSM760655.txt.gz
| | Sample_series_id | GSE30668
| | Sample_data_row_count | 31099
| | |
|
GSM760656 | GPL1355 |
|
caloric restriction, biological rep3
|
wild Wistar rats, caloric restriction to 70% of the energy intake
|
tissue: white adipose tissue
genotype: Jcl:Wistar (-/-) rat
age: 24 weeks
|
WC_050625_3
|
| Sample_geo_accession | GSM760656
| | Sample_status | Public on Sep 27 2012
| | Sample_submission_date | Jul 14 2011
| | Sample_last_update_date | Sep 27 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | All rats were provided food 30 minutes prior to turning off the lights in the evening and were sacrificed after turning on the lights in the following morning.
| | Sample_growth_protocol_ch1 | From six weeks of age, (-/-) rats were divided into two groups: ad libitum (AL) and CR (70% of the energy intake). AL, CR and Tg rats were sacrificed at 24 weeks of age.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated from the epididymal WAT using TRIZOL (Life Technologies).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | standard Affymetrix protocol
| | Sample_hyb_protocol | standard Affymetrix protocol
| | Sample_scan_protocol | standard Affymetrix protocol
| | Sample_data_processing | PM data of CEL file was parametrically normalized, and expression levels at each gene was estimated by trimmed means of the normalized PM data (Konishi (2008), Statistical Applications in Genetics and Molecular Biology: Vol. 7: Iss. 1, Article 25.) The normalized probe-level PM data is available as a supplementary txt file for each Sample, where the columns of data represent the probes 1-12 in same order to that of the chip's CDF file.
| | Sample_data_processing | A pseudo data was then derived in a form of antilog of the z-scores; the center of the pseudo data was 256. The pseudo data, ABS_CALL, and the normalized data (z-scores) are presented in the matrix form.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Tomokazu,,Konishi
| | Sample_contact_email | konishi@akita-pu.ac.jp
| | Sample_contact_phone | +81-18-872-1603
| | Sample_contact_fax | +81-18-872-1677
| | Sample_contact_laboratory | Molecular Genetics
| | Sample_contact_department | Bioresource Sciences
| | Sample_contact_institute | Akita Prefectural University
| | Sample_contact_address | Shimoshinjyo Nishi
| | Sample_contact_city | Akita
| | Sample_contact_state | Akita
| | Sample_contact_zip/postal_code | 010-0195
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM760nnn/GSM760656/suppl/GSM760656.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM760nnn/GSM760656/suppl/GSM760656.txt.gz
| | Sample_series_id | GSE30668
| | Sample_data_row_count | 31099
| | |
|
GSM760657 | GPL1355 |
|
caloric restriction, biological rep4
|
wild Wistar rats, caloric restriction to 70% of the energy intake
|
tissue: white adipose tissue
genotype: Jcl:Wistar (-/-) rat
age: 24 weeks
|
WC_050625_4
|
| Sample_geo_accession | GSM760657
| | Sample_status | Public on Sep 27 2012
| | Sample_submission_date | Jul 14 2011
| | Sample_last_update_date | Sep 27 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | All rats were provided food 30 minutes prior to turning off the lights in the evening and were sacrificed after turning on the lights in the following morning.
| | Sample_growth_protocol_ch1 | From six weeks of age, (-/-) rats were divided into two groups: ad libitum (AL) and CR (70% of the energy intake). AL, CR and Tg rats were sacrificed at 24 weeks of age.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated from the epididymal WAT using TRIZOL (Life Technologies).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | standard Affymetrix protocol
| | Sample_hyb_protocol | standard Affymetrix protocol
| | Sample_scan_protocol | standard Affymetrix protocol
| | Sample_data_processing | PM data of CEL file was parametrically normalized, and expression levels at each gene was estimated by trimmed means of the normalized PM data (Konishi (2008), Statistical Applications in Genetics and Molecular Biology: Vol. 7: Iss. 1, Article 25.) The normalized probe-level PM data is available as a supplementary txt file for each Sample, where the columns of data represent the probes 1-12 in same order to that of the chip's CDF file.
| | Sample_data_processing | A pseudo data was then derived in a form of antilog of the z-scores; the center of the pseudo data was 256. The pseudo data, ABS_CALL, and the normalized data (z-scores) are presented in the matrix form.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Tomokazu,,Konishi
| | Sample_contact_email | konishi@akita-pu.ac.jp
| | Sample_contact_phone | +81-18-872-1603
| | Sample_contact_fax | +81-18-872-1677
| | Sample_contact_laboratory | Molecular Genetics
| | Sample_contact_department | Bioresource Sciences
| | Sample_contact_institute | Akita Prefectural University
| | Sample_contact_address | Shimoshinjyo Nishi
| | Sample_contact_city | Akita
| | Sample_contact_state | Akita
| | Sample_contact_zip/postal_code | 010-0195
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM760nnn/GSM760657/suppl/GSM760657.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM760nnn/GSM760657/suppl/GSM760657.txt.gz
| | Sample_series_id | GSE30668
| | Sample_data_row_count | 31099
| | |
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(2 groups will be compared at a time) |
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| Select GSMs and click on "Add groups" |
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