Search results for the GEO ID: GSE30723  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM762682 | GPL570 |
|
ATII cells control 24h from donor 39
|
human alveolar epithelial cells
|
cell type: primary alveolar epithelial cells
individual: donor 39
infection: control
time: 24h
|
Gene expression data from dogs with hemangiosarcoma of different breeds
|
| Sample_geo_accession | GSM762682
| | Sample_status | Public on Jul 12 2012
| | Sample_submission_date | Jul 15 2011
| | Sample_last_update_date | Jul 12 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | influenza virus infection at moi of 0.5
| | Sample_growth_protocol_ch1 | human primary cultured cells were used
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was prepared using the RNEasy Mini Kit and QIAshredder columns (QIAGEN, Valencia, CA)
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2.5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 20 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Canine 2 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | The data were background corrected with the RMA algorithm using R and the Bioconductor's affy package. All parameters were set at its default settings
| | Sample_platform_id | GPL570
| | Sample_contact_name | Tzu Lip,,Phang
| | Sample_contact_email | tzu.phang@ucdenver.edu
| | Sample_contact_phone | (303) 724-6057
| | Sample_contact_fax | (720) 535-1468
| | Sample_contact_department | Medicine
| | Sample_contact_institute | University of Colorado, Denver
| | Sample_contact_address | 12700 East 19th Avenue
| | Sample_contact_city | Aurora
| | Sample_contact_state | CO
| | Sample_contact_zip/postal_code | 80045
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM762nnn/GSM762682/suppl/GSM762682_wang_39_II_MO_24h_HGU133_Plus_2.CEL.gz
| | Sample_series_id | GSE30723
| | Sample_data_row_count | 54675
| | |
|
GSM762683 | GPL570 |
|
ATII cells control 4h from donor 39
|
human alveolar epithelial cells
|
cell type: primary alveolar epithelial cells
individual: donor 39
infection: control
time: 4h
|
Gene expression data from dogs with hemangiosarcoma of different breeds
|
| Sample_geo_accession | GSM762683
| | Sample_status | Public on Jul 12 2012
| | Sample_submission_date | Jul 15 2011
| | Sample_last_update_date | Jul 12 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | influenza virus infection at moi of 0.5
| | Sample_growth_protocol_ch1 | human primary cultured cells were used
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was prepared using the RNEasy Mini Kit and QIAshredder columns (QIAGEN, Valencia, CA)
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2.5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 20 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Canine 2 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | The data were background corrected with the RMA algorithm using R and the Bioconductor's affy package. All parameters were set at its default settings
| | Sample_platform_id | GPL570
| | Sample_contact_name | Tzu Lip,,Phang
| | Sample_contact_email | tzu.phang@ucdenver.edu
| | Sample_contact_phone | (303) 724-6057
| | Sample_contact_fax | (720) 535-1468
| | Sample_contact_department | Medicine
| | Sample_contact_institute | University of Colorado, Denver
| | Sample_contact_address | 12700 East 19th Avenue
| | Sample_contact_city | Aurora
| | Sample_contact_state | CO
| | Sample_contact_zip/postal_code | 80045
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM762nnn/GSM762683/suppl/GSM762683_wang_39_II_MO_4h_HGU133_Plus_2.CEL.gz
| | Sample_series_id | GSE30723
| | Sample_data_row_count | 54675
| | |
|
GSM762684 | GPL570 |
|
ATII cells PR8 24h from donor 39
|
human alveolar epithelial cells
|
cell type: primary alveolar epithelial cells
individual: donor 39
infection: PR8
time: 24h
|
Gene expression data from dogs with hemangiosarcoma of different breeds
|
| Sample_geo_accession | GSM762684
| | Sample_status | Public on Jul 12 2012
| | Sample_submission_date | Jul 15 2011
| | Sample_last_update_date | Jul 12 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | influenza virus infection at moi of 0.5
| | Sample_growth_protocol_ch1 | human primary cultured cells were used
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was prepared using the RNEasy Mini Kit and QIAshredder columns (QIAGEN, Valencia, CA)
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2.5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 20 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Canine 2 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | The data were background corrected with the RMA algorithm using R and the Bioconductor's affy package. All parameters were set at its default settings
| | Sample_platform_id | GPL570
| | Sample_contact_name | Tzu Lip,,Phang
| | Sample_contact_email | tzu.phang@ucdenver.edu
| | Sample_contact_phone | (303) 724-6057
| | Sample_contact_fax | (720) 535-1468
| | Sample_contact_department | Medicine
| | Sample_contact_institute | University of Colorado, Denver
| | Sample_contact_address | 12700 East 19th Avenue
| | Sample_contact_city | Aurora
| | Sample_contact_state | CO
| | Sample_contact_zip/postal_code | 80045
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM762nnn/GSM762684/suppl/GSM762684_wang_39_II_PR8_24h_HGU133_Plus_2.CEL.gz
| | Sample_series_id | GSE30723
| | Sample_data_row_count | 54675
| | |
|
GSM762685 | GPL570 |
|
ATII cells PR8 4h from donor 39
|
human alveolar epithelial cells
|
cell type: primary alveolar epithelial cells
individual: donor 39
infection: PR8
time: 4h
|
Gene expression data from dogs with hemangiosarcoma of different breeds
|
| Sample_geo_accession | GSM762685
| | Sample_status | Public on Jul 12 2012
| | Sample_submission_date | Jul 15 2011
| | Sample_last_update_date | Jul 12 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | influenza virus infection at moi of 0.5
| | Sample_growth_protocol_ch1 | human primary cultured cells were used
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was prepared using the RNEasy Mini Kit and QIAshredder columns (QIAGEN, Valencia, CA)
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2.5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 20 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Canine 2 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | The data were background corrected with the RMA algorithm using R and the Bioconductor's affy package. All parameters were set at its default settings
| | Sample_platform_id | GPL570
| | Sample_contact_name | Tzu Lip,,Phang
| | Sample_contact_email | tzu.phang@ucdenver.edu
| | Sample_contact_phone | (303) 724-6057
| | Sample_contact_fax | (720) 535-1468
| | Sample_contact_department | Medicine
| | Sample_contact_institute | University of Colorado, Denver
| | Sample_contact_address | 12700 East 19th Avenue
| | Sample_contact_city | Aurora
| | Sample_contact_state | CO
| | Sample_contact_zip/postal_code | 80045
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM762nnn/GSM762685/suppl/GSM762685_wang_39_II_PR8_4h_HGU133_Plus_2.CEL.gz
| | Sample_series_id | GSE30723
| | Sample_data_row_count | 54675
| | |
|
GSM762686 | GPL570 |
|
AMs control 24h from donor 39
|
human alveolar macrophages
|
cell type: primary alveolar macrophages
individual: donor 39
infection: control
time: 24h
|
Gene expression data from dogs with hemangiosarcoma of different breeds
|
| Sample_geo_accession | GSM762686
| | Sample_status | Public on Jul 12 2012
| | Sample_submission_date | Jul 15 2011
| | Sample_last_update_date | Jul 12 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | influenza virus infection at moi of 0.5
| | Sample_growth_protocol_ch1 | human primary cultured cells were used
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was prepared using the RNEasy Mini Kit and QIAshredder columns (QIAGEN, Valencia, CA)
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2.5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 20 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Canine 2 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | The data were background corrected with the RMA algorithm using R and the Bioconductor's affy package. All parameters were set at its default settings
| | Sample_platform_id | GPL570
| | Sample_contact_name | Tzu Lip,,Phang
| | Sample_contact_email | tzu.phang@ucdenver.edu
| | Sample_contact_phone | (303) 724-6057
| | Sample_contact_fax | (720) 535-1468
| | Sample_contact_department | Medicine
| | Sample_contact_institute | University of Colorado, Denver
| | Sample_contact_address | 12700 East 19th Avenue
| | Sample_contact_city | Aurora
| | Sample_contact_state | CO
| | Sample_contact_zip/postal_code | 80045
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM762nnn/GSM762686/suppl/GSM762686_wang_39_MAC_MO_24h_HGU133_Plus_2.CEL.gz
| | Sample_series_id | GSE30723
| | Sample_data_row_count | 54675
| | |
|
GSM762687 | GPL570 |
|
AMs control 4h from donor 39
|
human alveolar macrophages
|
cell type: primary alveolar macrophages
individual: donor 39
infection: control
time: 4h
|
Gene expression data from dogs with hemangiosarcoma of different breeds
|
| Sample_geo_accession | GSM762687
| | Sample_status | Public on Jul 12 2012
| | Sample_submission_date | Jul 15 2011
| | Sample_last_update_date | Jul 12 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | influenza virus infection at moi of 0.5
| | Sample_growth_protocol_ch1 | human primary cultured cells were used
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was prepared using the RNEasy Mini Kit and QIAshredder columns (QIAGEN, Valencia, CA)
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2.5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 20 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Canine 2 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | The data were background corrected with the RMA algorithm using R and the Bioconductor's affy package. All parameters were set at its default settings
| | Sample_platform_id | GPL570
| | Sample_contact_name | Tzu Lip,,Phang
| | Sample_contact_email | tzu.phang@ucdenver.edu
| | Sample_contact_phone | (303) 724-6057
| | Sample_contact_fax | (720) 535-1468
| | Sample_contact_department | Medicine
| | Sample_contact_institute | University of Colorado, Denver
| | Sample_contact_address | 12700 East 19th Avenue
| | Sample_contact_city | Aurora
| | Sample_contact_state | CO
| | Sample_contact_zip/postal_code | 80045
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM762nnn/GSM762687/suppl/GSM762687_wang_39_MAC_MO_4h_HGU133_Plus_2.CEL.gz
| | Sample_series_id | GSE30723
| | Sample_data_row_count | 54675
| | |
|
GSM762688 | GPL570 |
|
AMs PR8 24h from donor 39
|
human alveolar macrophages
|
cell type: primary alveolar macrophages
individual: donor 39
infection: PR8
time: 24h
|
Gene expression data from dogs with hemangiosarcoma of different breeds
|
| Sample_geo_accession | GSM762688
| | Sample_status | Public on Jul 12 2012
| | Sample_submission_date | Jul 15 2011
| | Sample_last_update_date | Jul 12 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | influenza virus infection at moi of 0.5
| | Sample_growth_protocol_ch1 | human primary cultured cells were used
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was prepared using the RNEasy Mini Kit and QIAshredder columns (QIAGEN, Valencia, CA)
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2.5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 20 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Canine 2 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | The data were background corrected with the RMA algorithm using R and the Bioconductor's affy package. All parameters were set at its default settings
| | Sample_platform_id | GPL570
| | Sample_contact_name | Tzu Lip,,Phang
| | Sample_contact_email | tzu.phang@ucdenver.edu
| | Sample_contact_phone | (303) 724-6057
| | Sample_contact_fax | (720) 535-1468
| | Sample_contact_department | Medicine
| | Sample_contact_institute | University of Colorado, Denver
| | Sample_contact_address | 12700 East 19th Avenue
| | Sample_contact_city | Aurora
| | Sample_contact_state | CO
| | Sample_contact_zip/postal_code | 80045
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM762nnn/GSM762688/suppl/GSM762688_wang_39_MAC_PR8_24h_HGU133_Plus_2.CEL.gz
| | Sample_series_id | GSE30723
| | Sample_data_row_count | 54675
| | |
|
GSM762689 | GPL570 |
|
AMs PR8 4h from donor 39
|
human alveolar macrophages
|
cell type: primary alveolar macrophages
individual: donor 39
infection: PR8
time: 4h
|
Gene expression data from dogs with hemangiosarcoma of different breeds
|
| Sample_geo_accession | GSM762689
| | Sample_status | Public on Jul 12 2012
| | Sample_submission_date | Jul 15 2011
| | Sample_last_update_date | Jul 12 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | influenza virus infection at moi of 0.5
| | Sample_growth_protocol_ch1 | human primary cultured cells were used
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was prepared using the RNEasy Mini Kit and QIAshredder columns (QIAGEN, Valencia, CA)
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2.5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 20 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Canine 2 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | The data were background corrected with the RMA algorithm using R and the Bioconductor's affy package. All parameters were set at its default settings
| | Sample_platform_id | GPL570
| | Sample_contact_name | Tzu Lip,,Phang
| | Sample_contact_email | tzu.phang@ucdenver.edu
| | Sample_contact_phone | (303) 724-6057
| | Sample_contact_fax | (720) 535-1468
| | Sample_contact_department | Medicine
| | Sample_contact_institute | University of Colorado, Denver
| | Sample_contact_address | 12700 East 19th Avenue
| | Sample_contact_city | Aurora
| | Sample_contact_state | CO
| | Sample_contact_zip/postal_code | 80045
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM762nnn/GSM762689/suppl/GSM762689_wang_39_MAC_PR8_4h_HGU133_Plus_2.CEL.gz
| | Sample_series_id | GSE30723
| | Sample_data_row_count | 54675
| | |
|
GSM762690 | GPL570 |
|
ATII cells control 24h from donor 40
|
human alveolar epithelial cells
|
cell type: primary alveolar epithelial cells
individual: donor 40
infection: control
time: 24h
|
Gene expression data from dogs with hemangiosarcoma of different breeds
|
| Sample_geo_accession | GSM762690
| | Sample_status | Public on Jul 12 2012
| | Sample_submission_date | Jul 15 2011
| | Sample_last_update_date | Jul 12 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | influenza virus infection at moi of 0.5
| | Sample_growth_protocol_ch1 | human primary cultured cells were used
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was prepared using the RNEasy Mini Kit and QIAshredder columns (QIAGEN, Valencia, CA)
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2.5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 20 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Canine 2 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | The data were background corrected with the RMA algorithm using R and the Bioconductor's affy package. All parameters were set at its default settings
| | Sample_platform_id | GPL570
| | Sample_contact_name | Tzu Lip,,Phang
| | Sample_contact_email | tzu.phang@ucdenver.edu
| | Sample_contact_phone | (303) 724-6057
| | Sample_contact_fax | (720) 535-1468
| | Sample_contact_department | Medicine
| | Sample_contact_institute | University of Colorado, Denver
| | Sample_contact_address | 12700 East 19th Avenue
| | Sample_contact_city | Aurora
| | Sample_contact_state | CO
| | Sample_contact_zip/postal_code | 80045
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM762nnn/GSM762690/suppl/GSM762690_wang_40_II_MO_24h_HGU133_Plus_2.CEL.gz
| | Sample_series_id | GSE30723
| | Sample_data_row_count | 54675
| | |
|
GSM762691 | GPL570 |
|
ATII cells control 4h from donor 40
|
human alveolar epithelial cells
|
cell type: primary alveolar epithelial cells
individual: donor 40
infection: control
time: 4h
|
Gene expression data from dogs with hemangiosarcoma of different breeds
|
| Sample_geo_accession | GSM762691
| | Sample_status | Public on Jul 12 2012
| | Sample_submission_date | Jul 15 2011
| | Sample_last_update_date | Jul 12 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | influenza virus infection at moi of 0.5
| | Sample_growth_protocol_ch1 | human primary cultured cells were used
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was prepared using the RNEasy Mini Kit and QIAshredder columns (QIAGEN, Valencia, CA)
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2.5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 20 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Canine 2 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | The data were background corrected with the RMA algorithm using R and the Bioconductor's affy package. All parameters were set at its default settings
| | Sample_platform_id | GPL570
| | Sample_contact_name | Tzu Lip,,Phang
| | Sample_contact_email | tzu.phang@ucdenver.edu
| | Sample_contact_phone | (303) 724-6057
| | Sample_contact_fax | (720) 535-1468
| | Sample_contact_department | Medicine
| | Sample_contact_institute | University of Colorado, Denver
| | Sample_contact_address | 12700 East 19th Avenue
| | Sample_contact_city | Aurora
| | Sample_contact_state | CO
| | Sample_contact_zip/postal_code | 80045
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM762nnn/GSM762691/suppl/GSM762691_wang_40_II_MO_4h_HGU133_Plus_2.CEL.gz
| | Sample_series_id | GSE30723
| | Sample_data_row_count | 54675
| | |
|
GSM762692 | GPL570 |
|
ATII cells PR8 24h from donor 40
|
human alveolar epithelial cells
|
cell type: primary alveolar epithelial cells
individual: donor 40
infection: PR8
time: 24h
|
Gene expression data from dogs with hemangiosarcoma of different breeds
|
| Sample_geo_accession | GSM762692
| | Sample_status | Public on Jul 12 2012
| | Sample_submission_date | Jul 15 2011
| | Sample_last_update_date | Jul 12 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | influenza virus infection at moi of 0.5
| | Sample_growth_protocol_ch1 | human primary cultured cells were used
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was prepared using the RNEasy Mini Kit and QIAshredder columns (QIAGEN, Valencia, CA)
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2.5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 20 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Canine 2 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | The data were background corrected with the RMA algorithm using R and the Bioconductor's affy package. All parameters were set at its default settings
| | Sample_platform_id | GPL570
| | Sample_contact_name | Tzu Lip,,Phang
| | Sample_contact_email | tzu.phang@ucdenver.edu
| | Sample_contact_phone | (303) 724-6057
| | Sample_contact_fax | (720) 535-1468
| | Sample_contact_department | Medicine
| | Sample_contact_institute | University of Colorado, Denver
| | Sample_contact_address | 12700 East 19th Avenue
| | Sample_contact_city | Aurora
| | Sample_contact_state | CO
| | Sample_contact_zip/postal_code | 80045
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM762nnn/GSM762692/suppl/GSM762692_wang_40_II_PR8_24h_HGU133_Plus_2.CEL.gz
| | Sample_series_id | GSE30723
| | Sample_data_row_count | 54675
| | |
|
GSM762693 | GPL570 |
|
ATII cells PR8 4h from donor 40
|
human alveolar epithelial cells
|
cell type: primary alveolar epithelial cells
individual: donor 40
infection: PR8
time: 4h
|
Gene expression data from dogs with hemangiosarcoma of different breeds
|
| Sample_geo_accession | GSM762693
| | Sample_status | Public on Jul 12 2012
| | Sample_submission_date | Jul 15 2011
| | Sample_last_update_date | Jul 12 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | influenza virus infection at moi of 0.5
| | Sample_growth_protocol_ch1 | human primary cultured cells were used
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was prepared using the RNEasy Mini Kit and QIAshredder columns (QIAGEN, Valencia, CA)
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2.5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 20 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Canine 2 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | The data were background corrected with the RMA algorithm using R and the Bioconductor's affy package. All parameters were set at its default settings
| | Sample_platform_id | GPL570
| | Sample_contact_name | Tzu Lip,,Phang
| | Sample_contact_email | tzu.phang@ucdenver.edu
| | Sample_contact_phone | (303) 724-6057
| | Sample_contact_fax | (720) 535-1468
| | Sample_contact_department | Medicine
| | Sample_contact_institute | University of Colorado, Denver
| | Sample_contact_address | 12700 East 19th Avenue
| | Sample_contact_city | Aurora
| | Sample_contact_state | CO
| | Sample_contact_zip/postal_code | 80045
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM762nnn/GSM762693/suppl/GSM762693_wang_40_II_PR8_4h_HGU133_Plus_2.CEL.gz
| | Sample_series_id | GSE30723
| | Sample_data_row_count | 54675
| | |
|
GSM762694 | GPL570 |
|
AMs control 24h from donor 40
|
human alveolar macrophages
|
cell type: primary alveolar macrophages
individual: donor 40
infection: control
time: 24h
|
Gene expression data from dogs with hemangiosarcoma of different breeds
|
| Sample_geo_accession | GSM762694
| | Sample_status | Public on Jul 12 2012
| | Sample_submission_date | Jul 15 2011
| | Sample_last_update_date | Jul 12 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | influenza virus infection at moi of 0.5
| | Sample_growth_protocol_ch1 | human primary cultured cells were used
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was prepared using the RNEasy Mini Kit and QIAshredder columns (QIAGEN, Valencia, CA)
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2.5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 20 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Canine 2 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | The data were background corrected with the RMA algorithm using R and the Bioconductor's affy package. All parameters were set at its default settings
| | Sample_platform_id | GPL570
| | Sample_contact_name | Tzu Lip,,Phang
| | Sample_contact_email | tzu.phang@ucdenver.edu
| | Sample_contact_phone | (303) 724-6057
| | Sample_contact_fax | (720) 535-1468
| | Sample_contact_department | Medicine
| | Sample_contact_institute | University of Colorado, Denver
| | Sample_contact_address | 12700 East 19th Avenue
| | Sample_contact_city | Aurora
| | Sample_contact_state | CO
| | Sample_contact_zip/postal_code | 80045
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM762nnn/GSM762694/suppl/GSM762694_wang_40_MAC_MO_24h_HGU133_Plus_2.CEL.gz
| | Sample_series_id | GSE30723
| | Sample_data_row_count | 54675
| | |
|
GSM762695 | GPL570 |
|
AMs control 4h from donor 40
|
human alveolar macrophages
|
cell type: primary alveolar macrophages
individual: donor 40
infection: control
time: 4h
|
Gene expression data from dogs with hemangiosarcoma of different breeds
|
| Sample_geo_accession | GSM762695
| | Sample_status | Public on Jul 12 2012
| | Sample_submission_date | Jul 15 2011
| | Sample_last_update_date | Jul 12 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | influenza virus infection at moi of 0.5
| | Sample_growth_protocol_ch1 | human primary cultured cells were used
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was prepared using the RNEasy Mini Kit and QIAshredder columns (QIAGEN, Valencia, CA)
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2.5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 20 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Canine 2 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | The data were background corrected with the RMA algorithm using R and the Bioconductor's affy package. All parameters were set at its default settings
| | Sample_platform_id | GPL570
| | Sample_contact_name | Tzu Lip,,Phang
| | Sample_contact_email | tzu.phang@ucdenver.edu
| | Sample_contact_phone | (303) 724-6057
| | Sample_contact_fax | (720) 535-1468
| | Sample_contact_department | Medicine
| | Sample_contact_institute | University of Colorado, Denver
| | Sample_contact_address | 12700 East 19th Avenue
| | Sample_contact_city | Aurora
| | Sample_contact_state | CO
| | Sample_contact_zip/postal_code | 80045
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM762nnn/GSM762695/suppl/GSM762695_wang_40_MAC_MO_4h_HGU133_Plus_2.CEL.gz
| | Sample_series_id | GSE30723
| | Sample_data_row_count | 54675
| | |
|
GSM762696 | GPL570 |
|
AMs PR8 24h from donor 40
|
human alveolar macrophages
|
cell type: primary alveolar macrophages
individual: donor 40
infection: PR8
time: 24h
|
Gene expression data from dogs with hemangiosarcoma of different breeds
|
| Sample_geo_accession | GSM762696
| | Sample_status | Public on Jul 12 2012
| | Sample_submission_date | Jul 15 2011
| | Sample_last_update_date | Jul 12 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | influenza virus infection at moi of 0.5
| | Sample_growth_protocol_ch1 | human primary cultured cells were used
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was prepared using the RNEasy Mini Kit and QIAshredder columns (QIAGEN, Valencia, CA)
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2.5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 20 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Canine 2 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | The data were background corrected with the RMA algorithm using R and the Bioconductor's affy package. All parameters were set at its default settings
| | Sample_platform_id | GPL570
| | Sample_contact_name | Tzu Lip,,Phang
| | Sample_contact_email | tzu.phang@ucdenver.edu
| | Sample_contact_phone | (303) 724-6057
| | Sample_contact_fax | (720) 535-1468
| | Sample_contact_department | Medicine
| | Sample_contact_institute | University of Colorado, Denver
| | Sample_contact_address | 12700 East 19th Avenue
| | Sample_contact_city | Aurora
| | Sample_contact_state | CO
| | Sample_contact_zip/postal_code | 80045
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM762nnn/GSM762696/suppl/GSM762696_wang_40_MAC_PR8_24h_HGU133_Plus_2.CEL.gz
| | Sample_series_id | GSE30723
| | Sample_data_row_count | 54675
| | |
|
GSM762697 | GPL570 |
|
AMs PR8 4h from donor 40
|
human alveolar macrophages
|
cell type: primary alveolar macrophages
individual: donor 40
infection: PR8
time: 4h
|
Gene expression data from dogs with hemangiosarcoma of different breeds
|
| Sample_geo_accession | GSM762697
| | Sample_status | Public on Jul 12 2012
| | Sample_submission_date | Jul 15 2011
| | Sample_last_update_date | Jul 12 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | influenza virus infection at moi of 0.5
| | Sample_growth_protocol_ch1 | human primary cultured cells were used
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was prepared using the RNEasy Mini Kit and QIAshredder columns (QIAGEN, Valencia, CA)
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2.5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 20 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Canine 2 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | The data were background corrected with the RMA algorithm using R and the Bioconductor's affy package. All parameters were set at its default settings
| | Sample_platform_id | GPL570
| | Sample_contact_name | Tzu Lip,,Phang
| | Sample_contact_email | tzu.phang@ucdenver.edu
| | Sample_contact_phone | (303) 724-6057
| | Sample_contact_fax | (720) 535-1468
| | Sample_contact_department | Medicine
| | Sample_contact_institute | University of Colorado, Denver
| | Sample_contact_address | 12700 East 19th Avenue
| | Sample_contact_city | Aurora
| | Sample_contact_state | CO
| | Sample_contact_zip/postal_code | 80045
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM762nnn/GSM762697/suppl/GSM762697_wang_40_MAC_PR8_4h_HGU133_Plus_2.CEL.gz
| | Sample_series_id | GSE30723
| | Sample_data_row_count | 54675
| | |
|
GSM762698 | GPL570 |
|
ATII cells control 24h from donor 46
|
human alveolar epithelial cells
|
cell type: primary alveolar epithelial cells
individual: donor 46
infection: control
time: 24h
|
Gene expression data from dogs with hemangiosarcoma of different breeds
|
| Sample_geo_accession | GSM762698
| | Sample_status | Public on Jul 12 2012
| | Sample_submission_date | Jul 15 2011
| | Sample_last_update_date | Jul 12 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | influenza virus infection at moi of 0.5
| | Sample_growth_protocol_ch1 | human primary cultured cells were used
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was prepared using the RNEasy Mini Kit and QIAshredder columns (QIAGEN, Valencia, CA)
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2.5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 20 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Canine 2 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | The data were background corrected with the RMA algorithm using R and the Bioconductor's affy package. All parameters were set at its default settings
| | Sample_platform_id | GPL570
| | Sample_contact_name | Tzu Lip,,Phang
| | Sample_contact_email | tzu.phang@ucdenver.edu
| | Sample_contact_phone | (303) 724-6057
| | Sample_contact_fax | (720) 535-1468
| | Sample_contact_department | Medicine
| | Sample_contact_institute | University of Colorado, Denver
| | Sample_contact_address | 12700 East 19th Avenue
| | Sample_contact_city | Aurora
| | Sample_contact_state | CO
| | Sample_contact_zip/postal_code | 80045
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM762nnn/GSM762698/suppl/GSM762698_wang_46_II_MO_24h_HGU133_Plus_2.CEL.gz
| | Sample_series_id | GSE30723
| | Sample_data_row_count | 54675
| | |
|
GSM762699 | GPL570 |
|
ATII cells control 4h from donor 46
|
human alveolar epithelial cells
|
cell type: primary alveolar epithelial cells
individual: donor 46
infection: control
time: 4h
|
Gene expression data from dogs with hemangiosarcoma of different breeds
|
| Sample_geo_accession | GSM762699
| | Sample_status | Public on Jul 12 2012
| | Sample_submission_date | Jul 15 2011
| | Sample_last_update_date | Jul 12 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | influenza virus infection at moi of 0.5
| | Sample_growth_protocol_ch1 | human primary cultured cells were used
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was prepared using the RNEasy Mini Kit and QIAshredder columns (QIAGEN, Valencia, CA)
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2.5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 20 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Canine 2 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | The data were background corrected with the RMA algorithm using R and the Bioconductor's affy package. All parameters were set at its default settings
| | Sample_platform_id | GPL570
| | Sample_contact_name | Tzu Lip,,Phang
| | Sample_contact_email | tzu.phang@ucdenver.edu
| | Sample_contact_phone | (303) 724-6057
| | Sample_contact_fax | (720) 535-1468
| | Sample_contact_department | Medicine
| | Sample_contact_institute | University of Colorado, Denver
| | Sample_contact_address | 12700 East 19th Avenue
| | Sample_contact_city | Aurora
| | Sample_contact_state | CO
| | Sample_contact_zip/postal_code | 80045
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM762nnn/GSM762699/suppl/GSM762699_wang_46_II_MO_4h_HGU133_Plus_2.CEL.gz
| | Sample_series_id | GSE30723
| | Sample_data_row_count | 54675
| | |
|
GSM762700 | GPL570 |
|
ATII cells PR8 24h from donor 46
|
human alveolar epithelial cells
|
cell type: primary alveolar epithelial cells
individual: donor 46
infection: PR8
time: 24h
|
Gene expression data from dogs with hemangiosarcoma of different breeds
|
| Sample_geo_accession | GSM762700
| | Sample_status | Public on Jul 12 2012
| | Sample_submission_date | Jul 15 2011
| | Sample_last_update_date | Jul 12 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | influenza virus infection at moi of 0.5
| | Sample_growth_protocol_ch1 | human primary cultured cells were used
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was prepared using the RNEasy Mini Kit and QIAshredder columns (QIAGEN, Valencia, CA)
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2.5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 20 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Canine 2 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | The data were background corrected with the RMA algorithm using R and the Bioconductor's affy package. All parameters were set at its default settings
| | Sample_platform_id | GPL570
| | Sample_contact_name | Tzu Lip,,Phang
| | Sample_contact_email | tzu.phang@ucdenver.edu
| | Sample_contact_phone | (303) 724-6057
| | Sample_contact_fax | (720) 535-1468
| | Sample_contact_department | Medicine
| | Sample_contact_institute | University of Colorado, Denver
| | Sample_contact_address | 12700 East 19th Avenue
| | Sample_contact_city | Aurora
| | Sample_contact_state | CO
| | Sample_contact_zip/postal_code | 80045
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM762nnn/GSM762700/suppl/GSM762700_wang_46_II_PR8_24h_HGU133_Plus_2.CEL.gz
| | Sample_series_id | GSE30723
| | Sample_data_row_count | 54675
| | |
|
GSM762701 | GPL570 |
|
ATII cells PR8 4h from donor 46
|
human alveolar epithelial cells
|
cell type: primary alveolar epithelial cells
individual: donor 46
infection: PR8
time: 4h
|
Gene expression data from dogs with hemangiosarcoma of different breeds
|
| Sample_geo_accession | GSM762701
| | Sample_status | Public on Jul 12 2012
| | Sample_submission_date | Jul 15 2011
| | Sample_last_update_date | Jul 12 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | influenza virus infection at moi of 0.5
| | Sample_growth_protocol_ch1 | human primary cultured cells were used
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was prepared using the RNEasy Mini Kit and QIAshredder columns (QIAGEN, Valencia, CA)
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2.5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 20 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Canine 2 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | The data were background corrected with the RMA algorithm using R and the Bioconductor's affy package. All parameters were set at its default settings
| | Sample_platform_id | GPL570
| | Sample_contact_name | Tzu Lip,,Phang
| | Sample_contact_email | tzu.phang@ucdenver.edu
| | Sample_contact_phone | (303) 724-6057
| | Sample_contact_fax | (720) 535-1468
| | Sample_contact_department | Medicine
| | Sample_contact_institute | University of Colorado, Denver
| | Sample_contact_address | 12700 East 19th Avenue
| | Sample_contact_city | Aurora
| | Sample_contact_state | CO
| | Sample_contact_zip/postal_code | 80045
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM762nnn/GSM762701/suppl/GSM762701_wang_46_II_PR8_4h_HGU133_Plus_2.CEL.gz
| | Sample_series_id | GSE30723
| | Sample_data_row_count | 54675
| | |
|
GSM762702 | GPL570 |
|
AMs control 24h from donor 46
|
human alveolar macrophages
|
cell type: primary alveolar macrophages
individual: donor 46
infection: control
time: 24h
|
Gene expression data from dogs with hemangiosarcoma of different breeds
|
| Sample_geo_accession | GSM762702
| | Sample_status | Public on Jul 12 2012
| | Sample_submission_date | Jul 15 2011
| | Sample_last_update_date | Jul 12 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | influenza virus infection at moi of 0.5
| | Sample_growth_protocol_ch1 | human primary cultured cells were used
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was prepared using the RNEasy Mini Kit and QIAshredder columns (QIAGEN, Valencia, CA)
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2.5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 20 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Canine 2 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | The data were background corrected with the RMA algorithm using R and the Bioconductor's affy package. All parameters were set at its default settings
| | Sample_platform_id | GPL570
| | Sample_contact_name | Tzu Lip,,Phang
| | Sample_contact_email | tzu.phang@ucdenver.edu
| | Sample_contact_phone | (303) 724-6057
| | Sample_contact_fax | (720) 535-1468
| | Sample_contact_department | Medicine
| | Sample_contact_institute | University of Colorado, Denver
| | Sample_contact_address | 12700 East 19th Avenue
| | Sample_contact_city | Aurora
| | Sample_contact_state | CO
| | Sample_contact_zip/postal_code | 80045
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM762nnn/GSM762702/suppl/GSM762702_wang_46_MAC_MO_24h_HGU133_Plus_2.CEL.gz
| | Sample_series_id | GSE30723
| | Sample_data_row_count | 54675
| | |
|
GSM762703 | GPL570 |
|
AMs control 4h from donor 46
|
human alveolar macrophages
|
cell type: primary alveolar macrophages
individual: donor 46
infection: control
time: 4h
|
Gene expression data from dogs with hemangiosarcoma of different breeds
|
| Sample_geo_accession | GSM762703
| | Sample_status | Public on Jul 12 2012
| | Sample_submission_date | Jul 15 2011
| | Sample_last_update_date | Jul 12 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | influenza virus infection at moi of 0.5
| | Sample_growth_protocol_ch1 | human primary cultured cells were used
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was prepared using the RNEasy Mini Kit and QIAshredder columns (QIAGEN, Valencia, CA)
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2.5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 20 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Canine 2 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | The data were background corrected with the RMA algorithm using R and the Bioconductor's affy package. All parameters were set at its default settings
| | Sample_platform_id | GPL570
| | Sample_contact_name | Tzu Lip,,Phang
| | Sample_contact_email | tzu.phang@ucdenver.edu
| | Sample_contact_phone | (303) 724-6057
| | Sample_contact_fax | (720) 535-1468
| | Sample_contact_department | Medicine
| | Sample_contact_institute | University of Colorado, Denver
| | Sample_contact_address | 12700 East 19th Avenue
| | Sample_contact_city | Aurora
| | Sample_contact_state | CO
| | Sample_contact_zip/postal_code | 80045
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM762nnn/GSM762703/suppl/GSM762703_wang_46_MAC_MO_4h_HGU133_Plus_2.CEL.gz
| | Sample_series_id | GSE30723
| | Sample_data_row_count | 54675
| | |
|
GSM762704 | GPL570 |
|
AMs PR8 24h from donor 46
|
human alveolar macrophages
|
cell type: primary alveolar macrophages
individual: donor 46
infection: PR8
time: 24h
|
Gene expression data from dogs with hemangiosarcoma of different breeds
|
| Sample_geo_accession | GSM762704
| | Sample_status | Public on Jul 12 2012
| | Sample_submission_date | Jul 15 2011
| | Sample_last_update_date | Jul 12 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | influenza virus infection at moi of 0.5
| | Sample_growth_protocol_ch1 | human primary cultured cells were used
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was prepared using the RNEasy Mini Kit and QIAshredder columns (QIAGEN, Valencia, CA)
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2.5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 20 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Canine 2 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | The data were background corrected with the RMA algorithm using R and the Bioconductor's affy package. All parameters were set at its default settings
| | Sample_platform_id | GPL570
| | Sample_contact_name | Tzu Lip,,Phang
| | Sample_contact_email | tzu.phang@ucdenver.edu
| | Sample_contact_phone | (303) 724-6057
| | Sample_contact_fax | (720) 535-1468
| | Sample_contact_department | Medicine
| | Sample_contact_institute | University of Colorado, Denver
| | Sample_contact_address | 12700 East 19th Avenue
| | Sample_contact_city | Aurora
| | Sample_contact_state | CO
| | Sample_contact_zip/postal_code | 80045
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM762nnn/GSM762704/suppl/GSM762704_wang_46_MAC_PR8_24h_HGU133_Plus_2.CEL.gz
| | Sample_series_id | GSE30723
| | Sample_data_row_count | 54675
| | |
|
GSM762705 | GPL570 |
|
AMs PR8 4h from donor 46
|
human alveolar macrophages
|
cell type: primary alveolar macrophages
individual: donor 46
infection: PR8
time: 4h
|
Gene expression data from dogs with hemangiosarcoma of different breeds
|
| Sample_geo_accession | GSM762705
| | Sample_status | Public on Jul 12 2012
| | Sample_submission_date | Jul 15 2011
| | Sample_last_update_date | Jul 12 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | influenza virus infection at moi of 0.5
| | Sample_growth_protocol_ch1 | human primary cultured cells were used
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was prepared using the RNEasy Mini Kit and QIAshredder columns (QIAGEN, Valencia, CA)
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2.5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 20 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Canine 2 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | The data were background corrected with the RMA algorithm using R and the Bioconductor's affy package. All parameters were set at its default settings
| | Sample_platform_id | GPL570
| | Sample_contact_name | Tzu Lip,,Phang
| | Sample_contact_email | tzu.phang@ucdenver.edu
| | Sample_contact_phone | (303) 724-6057
| | Sample_contact_fax | (720) 535-1468
| | Sample_contact_department | Medicine
| | Sample_contact_institute | University of Colorado, Denver
| | Sample_contact_address | 12700 East 19th Avenue
| | Sample_contact_city | Aurora
| | Sample_contact_state | CO
| | Sample_contact_zip/postal_code | 80045
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM762nnn/GSM762705/suppl/GSM762705_wang_46_MAC_PR8_4h_HGU133_Plus_2.CEL.gz
| | Sample_series_id | GSE30723
| | Sample_data_row_count | 54675
| | |
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