Search results for the GEO ID: GSE30775  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM763577 | GPL570 |
|
231_control siRNA_rep1
|
231_control siRNA
|
cell line: MDA-MB-231
tumor cell type: ER-negative breaset cancer cells
genotype/variation: transfected with control siRNA
|
gene expression data upon control siRNA treatment
|
| Sample_geo_accession | GSM763577
| | Sample_status | Public on Jul 20 2011
| | Sample_submission_date | Jul 19 2011
| | Sample_last_update_date | Jul 20 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | total RNA extraction using RNeasyMini Kit (Qiagen)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2.5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, biotinylated cRNA was hybridized to HG-U133Plus_2.0 microarrays (Affymetrix, Inc., Santa Clara, CA, USA).
| | Sample_scan_protocol | The arrays were scanned in a GeneChip scanner 3000 (Affymetrix).
| | Sample_data_processing | Raw data representing the signal values of gene expression were pre-processed with the GeneChip Operating Software (GCOS) 1.4 Expression console 1.1 was used to obtain quality control data after MAS 5.0 statistical algorithm.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Soyoung,,Lim
| | Sample_contact_email | limsoyoung@gmx.de
| | Sample_contact_department | Institute of Pathology
| | Sample_contact_institute | Bonn medical school
| | Sample_contact_address | Sigmund-Freud str.25
| | Sample_contact_city | Bonn
| | Sample_contact_zip/postal_code | 53127
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM763nnn/GSM763577/suppl/GSM763577.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM763nnn/GSM763577/suppl/GSM763577.CHP.gz
| | Sample_series_id | GSE30775
| | Sample_data_row_count | 54675
| | |
|
GSM763578 | GPL570 |
|
231_control siRNA_rep2
|
231_control siRNA
|
cell line: MDA-MB-231
tumor cell type: ER-negative breaset cancer cells
genotype/variation: transfected with control siRNA
|
gene expression data upon control siRNA treatment
|
| Sample_geo_accession | GSM763578
| | Sample_status | Public on Jul 20 2011
| | Sample_submission_date | Jul 19 2011
| | Sample_last_update_date | Jul 20 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | total RNA extraction using RNeasyMini Kit (Qiagen)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2.5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, biotinylated cRNA was hybridized to HG-U133Plus_2.0 microarrays (Affymetrix, Inc., Santa Clara, CA, USA).
| | Sample_scan_protocol | The arrays were scanned in a GeneChip scanner 3000 (Affymetrix).
| | Sample_data_processing | Raw data representing the signal values of gene expression were pre-processed with the GeneChip Operating Software (GCOS) 1.4 Expression console 1.1 was used to obtain quality control data after MAS 5.0 statistical algorithm.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Soyoung,,Lim
| | Sample_contact_email | limsoyoung@gmx.de
| | Sample_contact_department | Institute of Pathology
| | Sample_contact_institute | Bonn medical school
| | Sample_contact_address | Sigmund-Freud str.25
| | Sample_contact_city | Bonn
| | Sample_contact_zip/postal_code | 53127
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM763nnn/GSM763578/suppl/GSM763578.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM763nnn/GSM763578/suppl/GSM763578.CHP.gz
| | Sample_series_id | GSE30775
| | Sample_data_row_count | 54675
| | |
|
GSM763579 | GPL570 |
|
231_control siRNA_rep3
|
231_control siRNA
|
cell line: MDA-MB-231
tumor cell type: ER-negative breaset cancer cells
genotype/variation: transfected with control siRNA
|
gene expression data upon control siRNA treatment
|
| Sample_geo_accession | GSM763579
| | Sample_status | Public on Jul 20 2011
| | Sample_submission_date | Jul 19 2011
| | Sample_last_update_date | Jul 20 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | total RNA extraction using RNeasyMini Kit (Qiagen)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2.5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, biotinylated cRNA was hybridized to HG-U133Plus_2.0 microarrays (Affymetrix, Inc., Santa Clara, CA, USA).
| | Sample_scan_protocol | The arrays were scanned in a GeneChip scanner 3000 (Affymetrix).
| | Sample_data_processing | Raw data representing the signal values of gene expression were pre-processed with the GeneChip Operating Software (GCOS) 1.4 Expression console 1.1 was used to obtain quality control data after MAS 5.0 statistical algorithm.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Soyoung,,Lim
| | Sample_contact_email | limsoyoung@gmx.de
| | Sample_contact_department | Institute of Pathology
| | Sample_contact_institute | Bonn medical school
| | Sample_contact_address | Sigmund-Freud str.25
| | Sample_contact_city | Bonn
| | Sample_contact_zip/postal_code | 53127
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM763nnn/GSM763579/suppl/GSM763579.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM763nnn/GSM763579/suppl/GSM763579.CHP.gz
| | Sample_series_id | GSE30775
| | Sample_data_row_count | 54675
| | |
|
GSM763580 | GPL570 |
|
231_LSD1 siRNA_rep1
|
231_LSD1 siRNA
|
cell line: MDA-MB-231
tumor cell type: ER-negative breaset cancer cells
genotype/variation: transfected with LSD1 siRNA
|
gene expression data upon LSD1 siRNA treatment
|
| Sample_geo_accession | GSM763580
| | Sample_status | Public on Jul 20 2011
| | Sample_submission_date | Jul 19 2011
| | Sample_last_update_date | Jul 20 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | total RNA extraction using RNeasyMini Kit (Qiagen)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2.5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, biotinylated cRNA was hybridized to HG-U133Plus_2.0 microarrays (Affymetrix, Inc., Santa Clara, CA, USA).
| | Sample_scan_protocol | The arrays were scanned in a GeneChip scanner 3000 (Affymetrix).
| | Sample_data_processing | Raw data representing the signal values of gene expression were pre-processed with the GeneChip Operating Software (GCOS) 1.4 Expression console 1.1 was used to obtain quality control data after MAS 5.0 statistical algorithm.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Soyoung,,Lim
| | Sample_contact_email | limsoyoung@gmx.de
| | Sample_contact_department | Institute of Pathology
| | Sample_contact_institute | Bonn medical school
| | Sample_contact_address | Sigmund-Freud str.25
| | Sample_contact_city | Bonn
| | Sample_contact_zip/postal_code | 53127
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM763nnn/GSM763580/suppl/GSM763580.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM763nnn/GSM763580/suppl/GSM763580.CHP.gz
| | Sample_series_id | GSE30775
| | Sample_data_row_count | 54675
| | |
|
GSM763581 | GPL570 |
|
231_LSD1 siRNA_rep2
|
231_LSD1 siRNA
|
cell line: MDA-MB-231
tumor cell type: ER-negative breaset cancer cells
genotype/variation: transfected with LSD1 siRNA
|
gene expression data upon LSD1 siRNA treatment
|
| Sample_geo_accession | GSM763581
| | Sample_status | Public on Jul 20 2011
| | Sample_submission_date | Jul 19 2011
| | Sample_last_update_date | Jul 20 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | total RNA extraction using RNeasyMini Kit (Qiagen)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2.5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, biotinylated cRNA was hybridized to HG-U133Plus_2.0 microarrays (Affymetrix, Inc., Santa Clara, CA, USA).
| | Sample_scan_protocol | The arrays were scanned in a GeneChip scanner 3000 (Affymetrix).
| | Sample_data_processing | Raw data representing the signal values of gene expression were pre-processed with the GeneChip Operating Software (GCOS) 1.4 Expression console 1.1 was used to obtain quality control data after MAS 5.0 statistical algorithm.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Soyoung,,Lim
| | Sample_contact_email | limsoyoung@gmx.de
| | Sample_contact_department | Institute of Pathology
| | Sample_contact_institute | Bonn medical school
| | Sample_contact_address | Sigmund-Freud str.25
| | Sample_contact_city | Bonn
| | Sample_contact_zip/postal_code | 53127
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM763nnn/GSM763581/suppl/GSM763581.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM763nnn/GSM763581/suppl/GSM763581.CHP.gz
| | Sample_series_id | GSE30775
| | Sample_data_row_count | 54675
| | |
|
GSM763582 | GPL570 |
|
231_LSD1 siRNA_rep3
|
231_LSD1 siRNA
|
cell line: MDA-MB-231
tumor cell type: ER-negative breaset cancer cells
genotype/variation: transfected with LSD1 siRNA
|
gene expression data upon LSD1 siRNA treatment
|
| Sample_geo_accession | GSM763582
| | Sample_status | Public on Jul 20 2011
| | Sample_submission_date | Jul 19 2011
| | Sample_last_update_date | Jul 20 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | total RNA extraction using RNeasyMini Kit (Qiagen)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2.5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, biotinylated cRNA was hybridized to HG-U133Plus_2.0 microarrays (Affymetrix, Inc., Santa Clara, CA, USA).
| | Sample_scan_protocol | The arrays were scanned in a GeneChip scanner 3000 (Affymetrix).
| | Sample_data_processing | Raw data representing the signal values of gene expression were pre-processed with the GeneChip Operating Software (GCOS) 1.4 Expression console 1.1 was used to obtain quality control data after MAS 5.0 statistical algorithm.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Soyoung,,Lim
| | Sample_contact_email | limsoyoung@gmx.de
| | Sample_contact_department | Institute of Pathology
| | Sample_contact_institute | Bonn medical school
| | Sample_contact_address | Sigmund-Freud str.25
| | Sample_contact_city | Bonn
| | Sample_contact_zip/postal_code | 53127
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM763nnn/GSM763582/suppl/GSM763582.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM763nnn/GSM763582/suppl/GSM763582.CHP.gz
| | Sample_series_id | GSE30775
| | Sample_data_row_count | 54675
| | |
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