Search results for the GEO ID: GSE30851  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM765483 | GPL1355 |
|
heart Sham rep1
|
heart of aged Norway Brown rat receiving sham-operation
|
gender: female
strain: Norway Brown
age: 18-22 months-old
tissue: heart
treatment: sham
|
total RNA was pooled from three rat hearts in equal amounts, and analyzed with gene expression chip
|
| Sample_geo_accession | GSM765483
| | Sample_status | Public on Jul 23 2011
| | Sample_submission_date | Jul 21 2011
| | Sample_last_update_date | Jul 23 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2005, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix Rat Genome 230 2.0 Array. Chips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the using the GeneChip® Scanner 3000.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Li,,Lin
| | Sample_contact_email | lilincn@hotmail.com
| | Sample_contact_laboratory | Knowlton Lab
| | Sample_contact_department | Department of Medicine
| | Sample_contact_institute | University of California, Davis
| | Sample_contact_address | 451 Health Sciences Way
| | Sample_contact_city | Davis
| | Sample_contact_zip/postal_code | CA 95616
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM765nnn/GSM765483/suppl/GSM765483_NB_rats_Sham_1.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM765nnn/GSM765483/suppl/GSM765483_NB_rats_Sham_1.CHP.gz
| | Sample_series_id | GSE30851
| | Sample_data_row_count | 31099
| | |
|
GSM765484 | GPL1355 |
|
heart Sham rep2
|
heart of aged Norway Brown rat receiving sham-operation
|
gender: female
strain: Norway Brown
age: 18-22 months-old
tissue: heart
treatment: sham
|
total RNA was pooled from three rat hearts in equal amounts, and analyzed with gene expression chip
|
| Sample_geo_accession | GSM765484
| | Sample_status | Public on Jul 23 2011
| | Sample_submission_date | Jul 21 2011
| | Sample_last_update_date | Jul 23 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2005, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix Rat Genome 230 2.0 Array. Chips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the using the GeneChip® Scanner 3000.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Li,,Lin
| | Sample_contact_email | lilincn@hotmail.com
| | Sample_contact_laboratory | Knowlton Lab
| | Sample_contact_department | Department of Medicine
| | Sample_contact_institute | University of California, Davis
| | Sample_contact_address | 451 Health Sciences Way
| | Sample_contact_city | Davis
| | Sample_contact_zip/postal_code | CA 95616
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM765nnn/GSM765484/suppl/GSM765484_NB_rats_Sham_2.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM765nnn/GSM765484/suppl/GSM765484_NB_rats_Sham_2.CHP.gz
| | Sample_series_id | GSE30851
| | Sample_data_row_count | 31099
| | |
|
GSM765485 | GPL1355 |
|
heart Ovx rep1
|
heart of aged Norway Brown rat receiving ovariectomy
|
gender: female
strain: Norway Brown
age: 18-22 months-old
tissue: heart
treatment: ovariectomy
|
total RNA was pooled from three rat hearts in equal amounts, and analyzed with gene expression chip
|
| Sample_geo_accession | GSM765485
| | Sample_status | Public on Jul 23 2011
| | Sample_submission_date | Jul 21 2011
| | Sample_last_update_date | Jul 23 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2005, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix Rat Genome 230 2.0 Array. Chips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the using the GeneChip® Scanner 3000.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Li,,Lin
| | Sample_contact_email | lilincn@hotmail.com
| | Sample_contact_laboratory | Knowlton Lab
| | Sample_contact_department | Department of Medicine
| | Sample_contact_institute | University of California, Davis
| | Sample_contact_address | 451 Health Sciences Way
| | Sample_contact_city | Davis
| | Sample_contact_zip/postal_code | CA 95616
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM765nnn/GSM765485/suppl/GSM765485_NB_rats_Ovx_1.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM765nnn/GSM765485/suppl/GSM765485_NB_rats_Ovx_1.CHP.gz
| | Sample_series_id | GSE30851
| | Sample_data_row_count | 31099
| | |
|
GSM765486 | GPL1355 |
|
heart Ovx rep2
|
heart of aged Norway Brown rat receiving ovariectomy
|
gender: female
strain: Norway Brown
age: 18-22 months-old
tissue: heart
treatment: ovariectomy
|
total RNA was pooled from three rat hearts in equal amounts, and analyzed with gene expression chip
|
| Sample_geo_accession | GSM765486
| | Sample_status | Public on Jul 23 2011
| | Sample_submission_date | Jul 21 2011
| | Sample_last_update_date | Jul 23 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2005, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix Rat Genome 230 2.0 Array. Chips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the using the GeneChip® Scanner 3000.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Li,,Lin
| | Sample_contact_email | lilincn@hotmail.com
| | Sample_contact_laboratory | Knowlton Lab
| | Sample_contact_department | Department of Medicine
| | Sample_contact_institute | University of California, Davis
| | Sample_contact_address | 451 Health Sciences Way
| | Sample_contact_city | Davis
| | Sample_contact_zip/postal_code | CA 95616
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM765nnn/GSM765486/suppl/GSM765486_NB_rats_Ovx_2.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM765nnn/GSM765486/suppl/GSM765486_NB_rats_Ovx_2.CHP.gz
| | Sample_series_id | GSE30851
| | Sample_data_row_count | 31099
| | |
|
GSM765487 | GPL1355 |
|
heart Ovx + Early estrogen rep1
|
heart of aged Norway Brown rat receiving ovariectomy plus immediate estrogen replacement
|
gender: female
strain: Norway Brown
age: 18-22 months-old
tissue: heart
treatment: ovariectomy + early estrogen
|
total RNA was pooled from three rat hearts in equal amounts, and analyzed with gene expression chip
|
| Sample_geo_accession | GSM765487
| | Sample_status | Public on Jul 23 2011
| | Sample_submission_date | Jul 21 2011
| | Sample_last_update_date | Jul 23 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2005, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix Rat Genome 230 2.0 Array. Chips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the using the GeneChip® Scanner 3000.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Li,,Lin
| | Sample_contact_email | lilincn@hotmail.com
| | Sample_contact_laboratory | Knowlton Lab
| | Sample_contact_department | Department of Medicine
| | Sample_contact_institute | University of California, Davis
| | Sample_contact_address | 451 Health Sciences Way
| | Sample_contact_city | Davis
| | Sample_contact_zip/postal_code | CA 95616
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM765nnn/GSM765487/suppl/GSM765487_NB_rats_Ovx_plus_early_estrogen_1.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM765nnn/GSM765487/suppl/GSM765487_NB_rats_Ovx_plus_early_estrogen_1.CHP.gz
| | Sample_series_id | GSE30851
| | Sample_data_row_count | 31099
| | |
|
GSM765488 | GPL1355 |
|
heart Ovx + Early estrogen rep2
|
heart of aged Norway Brown rat receiving ovariectomy plus immediate estrogen replacement
|
gender: female
strain: Norway Brown
age: 18-22 months-old
tissue: heart
treatment: ovariectomy + early estrogen
|
total RNA was pooled from three rat hearts in equal amounts, and analyzed with gene expression chip
|
| Sample_geo_accession | GSM765488
| | Sample_status | Public on Jul 23 2011
| | Sample_submission_date | Jul 21 2011
| | Sample_last_update_date | Jul 23 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2005, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix Rat Genome 230 2.0 Array. Chips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the using the GeneChip® Scanner 3000.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Li,,Lin
| | Sample_contact_email | lilincn@hotmail.com
| | Sample_contact_laboratory | Knowlton Lab
| | Sample_contact_department | Department of Medicine
| | Sample_contact_institute | University of California, Davis
| | Sample_contact_address | 451 Health Sciences Way
| | Sample_contact_city | Davis
| | Sample_contact_zip/postal_code | CA 95616
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM765nnn/GSM765488/suppl/GSM765488_NB_rats_Ovx_plus_early_estrogen_2.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM765nnn/GSM765488/suppl/GSM765488_NB_rats_Ovx_plus_early_estrogen_2.CHP.gz
| | Sample_series_id | GSE30851
| | Sample_data_row_count | 31099
| | |
|
GSM765489 | GPL1355 |
|
heart Ovx + Late estrogen rep1
|
heart of aged Norway Brown rat receiving ovariectomy plus delayed estrogen replacement
|
gender: female
strain: Norway Brown
age: 18-22 months-old
tissue: heart
treatment: ovariectomy + late estrogen
|
total RNA was pooled from three rat hearts in equal amounts, and analyzed with gene expression chip
|
| Sample_geo_accession | GSM765489
| | Sample_status | Public on Jul 23 2011
| | Sample_submission_date | Jul 21 2011
| | Sample_last_update_date | Jul 23 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2005, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix Rat Genome 230 2.0 Array. Chips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the using the GeneChip® Scanner 3000.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Li,,Lin
| | Sample_contact_email | lilincn@hotmail.com
| | Sample_contact_laboratory | Knowlton Lab
| | Sample_contact_department | Department of Medicine
| | Sample_contact_institute | University of California, Davis
| | Sample_contact_address | 451 Health Sciences Way
| | Sample_contact_city | Davis
| | Sample_contact_zip/postal_code | CA 95616
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM765nnn/GSM765489/suppl/GSM765489_NB_rats_Ovx_plus_late_estrogen_1.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM765nnn/GSM765489/suppl/GSM765489_NB_rats_Ovx_plus_late_estrogen_1.CHP.gz
| | Sample_series_id | GSE30851
| | Sample_data_row_count | 31099
| | |
|
GSM765490 | GPL1355 |
|
heart Ovx + Late estrogen rep2
|
heart of aged Norway Brown rat receiving ovariectomy plus delayed estrogen replacement
|
gender: female
strain: Norway Brown
age: 18-22 months-old
tissue: heart
treatment: ovariectomy + late estrogen
|
total RNA was pooled from three rat hearts in equal amounts, and analyzed with gene expression chip
|
| Sample_geo_accession | GSM765490
| | Sample_status | Public on Jul 23 2011
| | Sample_submission_date | Jul 21 2011
| | Sample_last_update_date | Jul 23 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2005, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix Rat Genome 230 2.0 Array. Chips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the using the GeneChip® Scanner 3000.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Li,,Lin
| | Sample_contact_email | lilincn@hotmail.com
| | Sample_contact_laboratory | Knowlton Lab
| | Sample_contact_department | Department of Medicine
| | Sample_contact_institute | University of California, Davis
| | Sample_contact_address | 451 Health Sciences Way
| | Sample_contact_city | Davis
| | Sample_contact_zip/postal_code | CA 95616
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM765nnn/GSM765490/suppl/GSM765490_NB_rats_Ovx_plus_late_estrogen_2.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM765nnn/GSM765490/suppl/GSM765490_NB_rats_Ovx_plus_late_estrogen_2.CHP.gz
| | Sample_series_id | GSE30851
| | Sample_data_row_count | 31099
| | |
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