Search results for the GEO ID: GSE30873  |
(Click on the check boxes provided under "Select for analysis", to initiate grouping) |
(Once the selection is made, click on "Add groups" in "Make groups for comparison", to make a group. Scroll down) |
|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM765922 | GPL1261 |
|
floxed control, biological rep1
|
IEC from floxed control mice
|
strain: C57BL/6
tissue: intestinal epithelial cells
genotype: casp8 flox, villinCre negative
|
Gene expression data from intestinal epithelial cells of floxed control mice
|
| Sample_geo_accession | GSM765922
| | Sample_status | Public on Jul 23 2011
| | Sample_submission_date | Jul 22 2011
| | Sample_last_update_date | Jul 23 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | not applicable
| | Sample_growth_protocol_ch1 | not applicable
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Extraction of total RNA was performed using the Qiagen RNA isolation kit according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip® Mouse Genome 430 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneScan 3000 7G.
| | Sample_data_processing | Data were normalized using the Robust Multi-array Average (RMA) algorithm, and analyzed with the FlexArray Suite.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Christoph,,Becker
| | Sample_contact_institute | University of Erlangen-Nuremberg
| | Sample_contact_address | Hartmannstrasse 14
| | Sample_contact_city | Erlangen
| | Sample_contact_zip/postal_code | 91052
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM765nnn/GSM765922/suppl/GSM765922_control-1.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM765nnn/GSM765922/suppl/GSM765922_control-1.chp.gz
| | Sample_series_id | GSE30873
| | Sample_data_row_count | 45101
| | |
|
GSM765923 | GPL1261 |
|
floxed control, biological rep2
|
IEC from floxed control mice
|
strain: C57BL/6
tissue: intestinal epithelial cells
genotype: casp8 flox, villinCre negative
|
Gene expression data from intestinal epithelial cells of floxed control mice
|
| Sample_geo_accession | GSM765923
| | Sample_status | Public on Jul 23 2011
| | Sample_submission_date | Jul 22 2011
| | Sample_last_update_date | Jul 23 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | not applicable
| | Sample_growth_protocol_ch1 | not applicable
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Extraction of total RNA was performed using the Qiagen RNA isolation kit according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip® Mouse Genome 430 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneScan 3000 7G.
| | Sample_data_processing | Data were normalized using the Robust Multi-array Average (RMA) algorithm, and analyzed with the FlexArray Suite.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Christoph,,Becker
| | Sample_contact_institute | University of Erlangen-Nuremberg
| | Sample_contact_address | Hartmannstrasse 14
| | Sample_contact_city | Erlangen
| | Sample_contact_zip/postal_code | 91052
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM765nnn/GSM765923/suppl/GSM765923_control-2.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM765nnn/GSM765923/suppl/GSM765923_control-2.chp.gz
| | Sample_series_id | GSE30873
| | Sample_data_row_count | 45101
| | |
|
GSM765924 | GPL1261 |
|
floxed control, biological rep3
|
IEC from floxed control mice
|
strain: C57BL/6
tissue: intestinal epithelial cells
genotype: casp8 flox, villinCre negative
|
Gene expression data from intestinal epithelial cells of floxed control mice
|
| Sample_geo_accession | GSM765924
| | Sample_status | Public on Jul 23 2011
| | Sample_submission_date | Jul 22 2011
| | Sample_last_update_date | Jul 23 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | not applicable
| | Sample_growth_protocol_ch1 | not applicable
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Extraction of total RNA was performed using the Qiagen RNA isolation kit according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip® Mouse Genome 430 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneScan 3000 7G.
| | Sample_data_processing | Data were normalized using the Robust Multi-array Average (RMA) algorithm, and analyzed with the FlexArray Suite.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Christoph,,Becker
| | Sample_contact_institute | University of Erlangen-Nuremberg
| | Sample_contact_address | Hartmannstrasse 14
| | Sample_contact_city | Erlangen
| | Sample_contact_zip/postal_code | 91052
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM765nnn/GSM765924/suppl/GSM765924_control-3.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM765nnn/GSM765924/suppl/GSM765924_control-3.chp.gz
| | Sample_series_id | GSE30873
| | Sample_data_row_count | 45101
| | |
|
GSM765925 | GPL1261 |
|
caspase-8 deficient, biological rep1
|
IEC from caspase-8 deficient mice
|
strain: C57BL/6
tissue: intestinal epithelial cells
genotype: casp8 flox, villinCre positive
|
Gene expression data from intestinal epithelial cells of conditional caspase-8 deficient mice
|
| Sample_geo_accession | GSM765925
| | Sample_status | Public on Jul 23 2011
| | Sample_submission_date | Jul 22 2011
| | Sample_last_update_date | Jul 23 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | not applicable
| | Sample_growth_protocol_ch1 | not applicable
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Extraction of total RNA was performed using the Qiagen RNA isolation kit according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip® Mouse Genome 430 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneScan 3000 7G.
| | Sample_data_processing | Data were normalized using the Robust Multi-array Average (RMA) algorithm, and analyzed with the FlexArray Suite.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Christoph,,Becker
| | Sample_contact_institute | University of Erlangen-Nuremberg
| | Sample_contact_address | Hartmannstrasse 14
| | Sample_contact_city | Erlangen
| | Sample_contact_zip/postal_code | 91052
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM765nnn/GSM765925/suppl/GSM765925_casp8ko-1.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM765nnn/GSM765925/suppl/GSM765925_casp8ko-1.chp.gz
| | Sample_series_id | GSE30873
| | Sample_data_row_count | 45101
| | |
|
GSM765926 | GPL1261 |
|
caspase-8 deficient, biological rep2
|
IEC from caspase-8 deficient mice
|
strain: C57BL/6
tissue: intestinal epithelial cells
genotype: casp8 flox, villinCre positive
|
Gene expression data from intestinal epithelial cells of conditional caspase-8 deficient mice
|
| Sample_geo_accession | GSM765926
| | Sample_status | Public on Jul 23 2011
| | Sample_submission_date | Jul 22 2011
| | Sample_last_update_date | Jul 23 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | not applicable
| | Sample_growth_protocol_ch1 | not applicable
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Extraction of total RNA was performed using the Qiagen RNA isolation kit according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip® Mouse Genome 430 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneScan 3000 7G.
| | Sample_data_processing | Data were normalized using the Robust Multi-array Average (RMA) algorithm, and analyzed with the FlexArray Suite.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Christoph,,Becker
| | Sample_contact_institute | University of Erlangen-Nuremberg
| | Sample_contact_address | Hartmannstrasse 14
| | Sample_contact_city | Erlangen
| | Sample_contact_zip/postal_code | 91052
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM765nnn/GSM765926/suppl/GSM765926_casp8ko-2.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM765nnn/GSM765926/suppl/GSM765926_casp8ko-2.chp.gz
| | Sample_series_id | GSE30873
| | Sample_data_row_count | 45101
| | |
|
GSM765927 | GPL1261 |
|
caspase-8 deficient, biological rep3
|
IEC from caspase-8 deficient mice
|
strain: C57BL/6
tissue: intestinal epithelial cells
genotype: casp8 flox, villinCre positive
|
Gene expression data from intestinal epithelial cells of conditional caspase-8 deficient mice
|
| Sample_geo_accession | GSM765927
| | Sample_status | Public on Jul 23 2011
| | Sample_submission_date | Jul 22 2011
| | Sample_last_update_date | Jul 23 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | not applicable
| | Sample_growth_protocol_ch1 | not applicable
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Extraction of total RNA was performed using the Qiagen RNA isolation kit according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip® Mouse Genome 430 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneScan 3000 7G.
| | Sample_data_processing | Data were normalized using the Robust Multi-array Average (RMA) algorithm, and analyzed with the FlexArray Suite.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Christoph,,Becker
| | Sample_contact_institute | University of Erlangen-Nuremberg
| | Sample_contact_address | Hartmannstrasse 14
| | Sample_contact_city | Erlangen
| | Sample_contact_zip/postal_code | 91052
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM765nnn/GSM765927/suppl/GSM765927_casp8ko-3.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM765nnn/GSM765927/suppl/GSM765927_casp8ko-3.chp.gz
| | Sample_series_id | GSE30873
| | Sample_data_row_count | 45101
| | |
|
| |
| |
Make groups for comparisons |
(2 groups will be compared at a time) |
|
| Select GSMs and click on "Add groups" |
Enter the group name here: |
|
|
|
