Search results for the GEO ID: GSE30884 |
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GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM766066 | GPL96 |
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cell line L-540, untreated
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Hodgkin’s lymphoma cell line L-540, untreated
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cell line: L-540
cell type: Hodgkin’s lymphoma cells
treatment: none
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Gene expression data from established Hodgkin's lymphoma cell line
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Sample_geo_accession | GSM766066
| Sample_status | Public on Dec 31 2011
| Sample_submission_date | Jul 22 2011
| Sample_last_update_date | Dec 31 2011
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Cells were treated with vorinostat or left untreated.
| Sample_growth_protocol_ch1 | Established Hodgkin's lymphoma cells were grown under standard conditions.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA was prepared according to the standard Affymetrix protocol from 10 ug total RNA.
| Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA was hybridized for 16 hr at 45C on HG_U133A Microarrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| Sample_data_processing | The data were analyzed using the MAS5.0 algorithm and Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL96
| Sample_contact_name | Martin,Sebastian,Staege
| Sample_contact_email | martin.staege@medizin.uni-halle.de
| Sample_contact_phone | +49-345-5577280
| Sample_contact_laboratory | Children's Cancer Reserach Center
| Sample_contact_department | Universitätsklinik u. Poliklinik für Kinder- u. Jugendmedizin
| Sample_contact_institute | Martin-Luther-University Halle-Wittenberg
| Sample_contact_address | Ernst-Grube-Str. 40
| Sample_contact_city | Halle (Saale)
| Sample_contact_state | Sachsen-Anhalt
| Sample_contact_zip/postal_code | 06120
| Sample_contact_country | Germany
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM766nnn/GSM766066/suppl/GSM766066.CEL.gz
| Sample_series_id | GSE30884
| Sample_data_row_count | 22283
| |
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GSM766067 | GPL96 |
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cell line L-540, treated with vorinostat
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Hodgkin’s lymphoma cell line L-540, treated with vorinostat
|
cell line: L-540
cell type: Hodgkin’s lymphoma cells
treatment: vorinostat
|
Gene expression data from established Hodgkin's lymphoma cell line after treatment with vorinostat
|
Sample_geo_accession | GSM766067
| Sample_status | Public on Dec 31 2011
| Sample_submission_date | Jul 22 2011
| Sample_last_update_date | Dec 31 2011
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Cells were treated with vorinostat or left untreated.
| Sample_growth_protocol_ch1 | Established Hodgkin's lymphoma cells were grown under standard conditions.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA was prepared according to the standard Affymetrix protocol from 10 ug total RNA.
| Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA was hybridized for 16 hr at 45C on HG_U133A Microarrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| Sample_data_processing | The data were analyzed using the MAS5.0 algorithm and Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL96
| Sample_contact_name | Martin,Sebastian,Staege
| Sample_contact_email | martin.staege@medizin.uni-halle.de
| Sample_contact_phone | +49-345-5577280
| Sample_contact_laboratory | Children's Cancer Reserach Center
| Sample_contact_department | Universitätsklinik u. Poliklinik für Kinder- u. Jugendmedizin
| Sample_contact_institute | Martin-Luther-University Halle-Wittenberg
| Sample_contact_address | Ernst-Grube-Str. 40
| Sample_contact_city | Halle (Saale)
| Sample_contact_state | Sachsen-Anhalt
| Sample_contact_zip/postal_code | 06120
| Sample_contact_country | Germany
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM766nnn/GSM766067/suppl/GSM766067.CEL.gz
| Sample_series_id | GSE30884
| Sample_data_row_count | 22283
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