Search results for the GEO ID: GSE30974  |
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GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM767738 | GPL1261 |
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Uninfected
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Uninfected
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strain: CBA/J
gender: female
age: 6-8 weeks
tissue: cecum
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uninfected
Gene expression data from mouse cecal tissue uninfected
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| Sample_geo_accession | GSM767738
| | Sample_status | Public on Aug 01 2012
| | Sample_submission_date | Jul 27 2011
| | Sample_last_update_date | Aug 01 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Cecal tissue was harvested 4 days following infection or mock infection and snap frozen in liquid nitrogen
| | Sample_growth_protocol_ch1 | All mice were maintained in standard caging conditions by the UC Davis Center for Laboratory Animal Science, receiving standard rodent chow and sterile drinking water ad libitum.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Mouse 430 2 GeneChip arrays, the arrays were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using Affymetrix Scanner 3000
| | Sample_data_processing | Data were analyzed with dChip, version 2005
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Michael,,George
| | Sample_contact_email | mdgeorge@ucdavis.edu
| | Sample_contact_phone | 5307547242
| | Sample_contact_laboratory | School of Medicine
| | Sample_contact_department | Microarray Core Facility
| | Sample_contact_institute | University of California, Davis
| | Sample_contact_address | One Shields Ave
| | Sample_contact_city | Davis
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 95616
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM767nnn/GSM767738/suppl/GSM767738_uninfected.CEL.gz
| | Sample_series_id | GSE30974
| | Sample_data_row_count | 45037
| | |
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GSM767739 | GPL1261 |
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Salmonella Typhimurium infected
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Salmonella Typhimurium infected
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strain: CBA/J
gender: female
age: 6-8 weeks
tissue: cecum
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S_typh
Gene expression data from mouse cecal tissue infected with S. Typhimurium
|
| Sample_geo_accession | GSM767739
| | Sample_status | Public on Aug 01 2012
| | Sample_submission_date | Jul 27 2011
| | Sample_last_update_date | Aug 01 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Cecal tissue was harvested 4 days following infection or mock infection and snap frozen in liquid nitrogen
| | Sample_growth_protocol_ch1 | All mice were maintained in standard caging conditions by the UC Davis Center for Laboratory Animal Science, receiving standard rodent chow and sterile drinking water ad libitum.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Mouse 430 2 GeneChip arrays, the arrays were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using Affymetrix Scanner 3000
| | Sample_data_processing | Data were analyzed with dChip, version 2005
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Michael,,George
| | Sample_contact_email | mdgeorge@ucdavis.edu
| | Sample_contact_phone | 5307547242
| | Sample_contact_laboratory | School of Medicine
| | Sample_contact_department | Microarray Core Facility
| | Sample_contact_institute | University of California, Davis
| | Sample_contact_address | One Shields Ave
| | Sample_contact_city | Davis
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 95616
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM767nnn/GSM767739/suppl/GSM767739_S_typh.CEL.gz
| | Sample_series_id | GSE30974
| | Sample_data_row_count | 45037
| | |
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GSM767740 | GPL1261 |
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Plasmodium yoelii infected
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Plasmodium yoelii infected
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strain: CBA/J
gender: female
age: 6-8 weeks
tissue: cecum
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P_yoelii
Gene expression data from mouse cecal tissue infected with P. yoelii
|
| Sample_geo_accession | GSM767740
| | Sample_status | Public on Aug 01 2012
| | Sample_submission_date | Jul 27 2011
| | Sample_last_update_date | Aug 01 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Cecal tissue was harvested 4 days following infection or mock infection and snap frozen in liquid nitrogen
| | Sample_growth_protocol_ch1 | All mice were maintained in standard caging conditions by the UC Davis Center for Laboratory Animal Science, receiving standard rodent chow and sterile drinking water ad libitum.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Mouse 430 2 GeneChip arrays, the arrays were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using Affymetrix Scanner 3000
| | Sample_data_processing | Data were analyzed with dChip, version 2005
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Michael,,George
| | Sample_contact_email | mdgeorge@ucdavis.edu
| | Sample_contact_phone | 5307547242
| | Sample_contact_laboratory | School of Medicine
| | Sample_contact_department | Microarray Core Facility
| | Sample_contact_institute | University of California, Davis
| | Sample_contact_address | One Shields Ave
| | Sample_contact_city | Davis
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 95616
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM767nnn/GSM767740/suppl/GSM767740_P_yoelii.CEL.gz
| | Sample_series_id | GSE30974
| | Sample_data_row_count | 45037
| | |
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GSM767741 | GPL1261 |
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Salmonella-Plasmodium co-infected
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Salmonella-Plasmodium co-infected
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strain: CBA/J
gender: female
age: 6-8 weeks
tissue: cecum
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S_typh_P_yoelii
Gene expression data from mouse cecal tissue infected with Salmonella and Plasmodium
|
| Sample_geo_accession | GSM767741
| | Sample_status | Public on Aug 01 2012
| | Sample_submission_date | Jul 27 2011
| | Sample_last_update_date | Aug 01 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Cecal tissue was harvested 4 days following infection or mock infection and snap frozen in liquid nitrogen
| | Sample_growth_protocol_ch1 | All mice were maintained in standard caging conditions by the UC Davis Center for Laboratory Animal Science, receiving standard rodent chow and sterile drinking water ad libitum.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Mouse 430 2 GeneChip arrays, the arrays were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using Affymetrix Scanner 3000
| | Sample_data_processing | Data were analyzed with dChip, version 2005
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Michael,,George
| | Sample_contact_email | mdgeorge@ucdavis.edu
| | Sample_contact_phone | 5307547242
| | Sample_contact_laboratory | School of Medicine
| | Sample_contact_department | Microarray Core Facility
| | Sample_contact_institute | University of California, Davis
| | Sample_contact_address | One Shields Ave
| | Sample_contact_city | Davis
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 95616
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM767nnn/GSM767741/suppl/GSM767741_S_typh_P_yoelii.CEL.gz
| | Sample_series_id | GSE30974
| | Sample_data_row_count | 45037
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