Search results for the GEO ID: GSE31148 |
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GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM770914 | GPL1261 |
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Control RNAi
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Control-depleted NIH3T3 cells
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cell line: NIH3T3 cells
knockdown: Control RNAi
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Sample_geo_accession | GSM770914
| Sample_status | Public on Aug 03 2011
| Sample_submission_date | Aug 02 2011
| Sample_last_update_date | Aug 03 2011
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_treatment_protocol_ch1 | shRNA-expressing retrovirus infection
| Sample_growth_protocol_ch1 | 10%-FBS-DMEM
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA were extracted with ISOGEN according to manufacture's protocol (Nippon Gene) and purified with RNeasy Kit (Qiagen).
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from total RNA.
| Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16hr at 45C on Gene Chip Mouse Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner.
| Sample_data_processing | The data were analyzed with Affymetrix GCOS (GeneChipOperating Software) software.
| Sample_platform_id | GPL1261
| Sample_contact_name | Masahiro,,Morita
| Sample_contact_department | Instiute of Medical Science
| Sample_contact_institute | University of Tokyo
| Sample_contact_address | 4-6-1 Shirokanedai
| Sample_contact_city | Minato-ku
| Sample_contact_state | Tokyo
| Sample_contact_zip/postal_code | 108-8639
| Sample_contact_country | Japan
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM770nnn/GSM770914/suppl/GSM770914_Control_RNAi.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM770nnn/GSM770914/suppl/GSM770914_Control_RNAi.CHP.gz
| Sample_series_id | GSE31148
| Sample_data_row_count | 45101
| |
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GSM770915 | GPL1261 |
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CCR4b RNAi
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CCR4b-depleted NIH3T3 cells
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cell line: NIH3T3 cells
knockdown: CCR4b RNAi
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Sample_geo_accession | GSM770915
| Sample_status | Public on Aug 03 2011
| Sample_submission_date | Aug 02 2011
| Sample_last_update_date | Aug 03 2011
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_treatment_protocol_ch1 | shRNA-expressing retrovirus infection
| Sample_growth_protocol_ch1 | 10%-FBS-DMEM
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA were extracted with ISOGEN according to manufacture's protocol (Nippon Gene) and purified with RNeasy Kit (Qiagen).
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from total RNA.
| Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16hr at 45C on Gene Chip Mouse Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner.
| Sample_data_processing | The data were analyzed with Affymetrix GCOS (GeneChipOperating Software) software.
| Sample_platform_id | GPL1261
| Sample_contact_name | Masahiro,,Morita
| Sample_contact_department | Instiute of Medical Science
| Sample_contact_institute | University of Tokyo
| Sample_contact_address | 4-6-1 Shirokanedai
| Sample_contact_city | Minato-ku
| Sample_contact_state | Tokyo
| Sample_contact_zip/postal_code | 108-8639
| Sample_contact_country | Japan
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM770nnn/GSM770915/suppl/GSM770915_CCR4b_RNAi.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM770nnn/GSM770915/suppl/GSM770915_CCR4b_RNAi.CHP.gz
| Sample_series_id | GSE31148
| Sample_data_row_count | 45101
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