Search results for the GEO ID: GSE3116  |
(Click on the check boxes provided under "Select for analysis", to initiate grouping) |
(Once the selection is made, click on "Add groups" in "Make groups for comparison", to make a group. Scroll down) |
|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM69701 | GPL339 |
|
HNF4 null_59
|
E18.5 Embryo Colon
|
strain: HNF4LoxP/LoxP FoxA3Cre
age: E18.5
tissue: Fetal Colon
|
N/A
|
| Sample_geo_accession | GSM69701
| | Sample_status | Public on Jan 01 2006
| | Sample_submission_date | Aug 12 2005
| | Sample_last_update_date | Nov 18 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen RNeasy mini
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol
| | Sample_hyb_protocol | Standard Affymetrix protocol
| | Sample_scan_protocol | Standard Affymetrix protocol
| | Sample_data_processing | D-Chip, PM/MM model with defaults
| | Sample_platform_id | GPL339
| | Sample_contact_name | Stephen,A,Duncan
| | Sample_contact_email | duncans@mcw.edu
| | Sample_contact_phone | 414 456 8602
| | Sample_contact_laboratory | Duncan Lab
| | Sample_contact_department | Cell Biology
| | Sample_contact_institute | Stephen Duncan
| | Sample_contact_address | 8701 Watertown Plank Rd
| | Sample_contact_city | Milwaukee
| | Sample_contact_state | WI
| | Sample_contact_zip/postal_code | 53226
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM69nnn/GSM69701/suppl/GSM69701.CEL.gz
| | Sample_series_id | GSE3116
| | Sample_data_row_count | 22690
| | |
|
GSM69703 | GPL339 |
|
HNF4 null_60
|
E18.5 Embryo Colon
|
strain: HNF4LoxP/LoxP FoxA3Cre
age: E18.5
tissue: Fetal Colon
|
N/A
|
| Sample_geo_accession | GSM69703
| | Sample_status | Public on Jan 01 2006
| | Sample_submission_date | Aug 12 2005
| | Sample_last_update_date | Nov 18 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen RNeasy mini
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol
| | Sample_hyb_protocol | Standard Affymetrix protocol
| | Sample_scan_protocol | Standard Affymetrix protocol
| | Sample_data_processing | D-Chip, PM/MM model with defaults
| | Sample_platform_id | GPL339
| | Sample_contact_name | Stephen,A,Duncan
| | Sample_contact_email | duncans@mcw.edu
| | Sample_contact_phone | 414 456 8602
| | Sample_contact_laboratory | Duncan Lab
| | Sample_contact_department | Cell Biology
| | Sample_contact_institute | Stephen Duncan
| | Sample_contact_address | 8701 Watertown Plank Rd
| | Sample_contact_city | Milwaukee
| | Sample_contact_state | WI
| | Sample_contact_zip/postal_code | 53226
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM69nnn/GSM69703/suppl/GSM69703.CEL.gz
| | Sample_series_id | GSE3116
| | Sample_data_row_count | 22690
| | |
|
GSM69704 | GPL339 |
|
HNF4 null_426
|
E18.5 Embryo Colon
|
strain: HNF4LoxP/LoxP FoxA3Cre
age: E18.5
tissue: Fetal Colon
|
N/A
|
| Sample_geo_accession | GSM69704
| | Sample_status | Public on Jan 01 2006
| | Sample_submission_date | Aug 12 2005
| | Sample_last_update_date | Nov 18 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen RNeasy mini
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol
| | Sample_hyb_protocol | Standard Affymetrix protocol
| | Sample_scan_protocol | Standard Affymetrix protocol
| | Sample_data_processing | D-Chip, PM/MM model with defaults
| | Sample_platform_id | GPL339
| | Sample_contact_name | Stephen,A,Duncan
| | Sample_contact_email | duncans@mcw.edu
| | Sample_contact_phone | 414 456 8602
| | Sample_contact_laboratory | Duncan Lab
| | Sample_contact_department | Cell Biology
| | Sample_contact_institute | Stephen Duncan
| | Sample_contact_address | 8701 Watertown Plank Rd
| | Sample_contact_city | Milwaukee
| | Sample_contact_state | WI
| | Sample_contact_zip/postal_code | 53226
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM69nnn/GSM69704/suppl/GSM69704.CEL.gz
| | Sample_series_id | GSE3116
| | Sample_data_row_count | 22690
| | |
|
GSM69705 | GPL339 |
|
HNF4 CONTROL_406
|
E18.5 Embryo Colon
|
strain: HNF4LoxP/+ FoxA3Cre
age: E18.5
tissue: Fetal Colon
|
N/A
|
| Sample_geo_accession | GSM69705
| | Sample_status | Public on Jan 01 2006
| | Sample_submission_date | Aug 12 2005
| | Sample_last_update_date | Nov 18 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen RNeasy mini
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol
| | Sample_hyb_protocol | Standard Affymetrix protocol
| | Sample_scan_protocol | Standard Affymetrix protocol
| | Sample_data_processing | D-Chip, PM/MM model with defaults
| | Sample_platform_id | GPL339
| | Sample_contact_name | Stephen,A,Duncan
| | Sample_contact_email | duncans@mcw.edu
| | Sample_contact_phone | 414 456 8602
| | Sample_contact_laboratory | Duncan Lab
| | Sample_contact_department | Cell Biology
| | Sample_contact_institute | Stephen Duncan
| | Sample_contact_address | 8701 Watertown Plank Rd
| | Sample_contact_city | Milwaukee
| | Sample_contact_state | WI
| | Sample_contact_zip/postal_code | 53226
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM69nnn/GSM69705/suppl/GSM69705.CEL.gz
| | Sample_series_id | GSE3116
| | Sample_data_row_count | 22690
| | |
|
GSM69706 | GPL339 |
|
HNF4 CONTROL_421
|
E18.5 Embryo Colon
|
strain: HNF4LoxP/+ FoxA3Cre
age: E18.5
tissue: Fetal Colon
|
N/A
|
| Sample_geo_accession | GSM69706
| | Sample_status | Public on Jan 01 2006
| | Sample_submission_date | Aug 12 2005
| | Sample_last_update_date | Nov 18 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen RNeasy mini
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol
| | Sample_hyb_protocol | Standard Affymetrix protocol
| | Sample_scan_protocol | Standard Affymetrix protocol
| | Sample_data_processing | D-Chip, PM/MM model with defaults
| | Sample_platform_id | GPL339
| | Sample_contact_name | Stephen,A,Duncan
| | Sample_contact_email | duncans@mcw.edu
| | Sample_contact_phone | 414 456 8602
| | Sample_contact_laboratory | Duncan Lab
| | Sample_contact_department | Cell Biology
| | Sample_contact_institute | Stephen Duncan
| | Sample_contact_address | 8701 Watertown Plank Rd
| | Sample_contact_city | Milwaukee
| | Sample_contact_state | WI
| | Sample_contact_zip/postal_code | 53226
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM69nnn/GSM69706/suppl/GSM69706.CEL.gz
| | Sample_series_id | GSE3116
| | Sample_data_row_count | 22690
| | |
|
| |
| |
Make groups for comparisons |
(2 groups will be compared at a time) |
|
| Select GSMs and click on "Add groups" |
Enter the group name here: |
|
|
|
Select expression type |
| Transcripts profile based on; |
A. Differential status (Up/Down regulation) |
|
|
Regulation type |
|
Fold change |
|
p-value |
|
|
|
B. Absolute calls (Transcribed/Not-detected) |
|
|
| Derive calls within/across groups |
Within groups |
|
|
Detection status |
|
Percentage detection |
|
|
Across groups |
|
|
Detection status |
First group: |
- |
Second group:
|
Percentage detection |
First group: |
- |
Second group:
|
|
|
| |
Filter results by number of probes |
|
|
