Search results for the GEO ID: GSE31172  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM772587 | GPL570 |
|
HeLa_Mock_rep1
|
HeLa cells, mock
|
cell line: HeLa
transduction: mock
|
|
| Sample_geo_accession | GSM772587
| | Sample_status | Public on Sep 12 2011
| | Sample_submission_date | Aug 03 2011
| | Sample_last_update_date | Sep 12 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | None
| | Sample_growth_protocol_ch1 | HeLa and TF-1 cells were retrovirally transduced with either mock, wild-type U2AF35 or S34F mutant . The cells were sorted by GFP-marking using a MoFlo® FACS cell sorter (Beckman Coulter) 48 hrs after retoroviral tranduction.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA from cultured cells was isolated with the RNeasy Total RNA kit (Qiagen) using RNase-free DNase set (Qiagen) to reduce contamination of genomic DNA according to the manufacturer’s protocol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Affymetrix starndard
| | Sample_hyb_protocol | Affymetrix starndard
| | Sample_scan_protocol | Affymetrix starndard
| | Sample_data_processing | Raw array signals were processed using Expression Console software (Affymetrix) in which RMA was performed.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Aiko,,Sato-Otsubo
| | Sample_contact_institute | University of Tokyo
| | Sample_contact_address | 7-3-1, Hongo, Bunkyo-ku
| | Sample_contact_city | Tokyo
| | Sample_contact_zip/postal_code | 113-8655
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM772nnn/GSM772587/suppl/GSM772587_Hela_mock_1_whole1_.110529.rma.chp.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM772nnn/GSM772587/suppl/GSM772587_Hela_mock_1_whole1_.CEL.gz
| | Sample_series_id | GSE31172
| | Sample_series_id | GSE31173
| | Sample_data_row_count | 54675
| | |
|
GSM772588 | GPL570 |
|
HeLa_Mock_rep2
|
HeLa cells, mock
|
cell line: HeLa
transduction: mock
|
|
| Sample_geo_accession | GSM772588
| | Sample_status | Public on Sep 12 2011
| | Sample_submission_date | Aug 03 2011
| | Sample_last_update_date | Sep 12 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | None
| | Sample_growth_protocol_ch1 | HeLa and TF-1 cells were retrovirally transduced with either mock, wild-type U2AF35 or S34F mutant . The cells were sorted by GFP-marking using a MoFlo® FACS cell sorter (Beckman Coulter) 48 hrs after retoroviral tranduction.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA from cultured cells was isolated with the RNeasy Total RNA kit (Qiagen) using RNase-free DNase set (Qiagen) to reduce contamination of genomic DNA according to the manufacturer’s protocol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Affymetrix starndard
| | Sample_hyb_protocol | Affymetrix starndard
| | Sample_scan_protocol | Affymetrix starndard
| | Sample_data_processing | Raw array signals were processed using Expression Console software (Affymetrix) in which RMA was performed.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Aiko,,Sato-Otsubo
| | Sample_contact_institute | University of Tokyo
| | Sample_contact_address | 7-3-1, Hongo, Bunkyo-ku
| | Sample_contact_city | Tokyo
| | Sample_contact_zip/postal_code | 113-8655
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM772nnn/GSM772588/suppl/GSM772588_Hela_Mock_1_whole2_HG-U133_Plus_2_.110529.rma.chp.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM772nnn/GSM772588/suppl/GSM772588_Hela_Mock_1_whole2_HG-U133_Plus_2_.CEL.gz
| | Sample_series_id | GSE31172
| | Sample_series_id | GSE31173
| | Sample_data_row_count | 54675
| | |
|
GSM772589 | GPL570 |
|
HeLa_Mock_rep3
|
HeLa cells, mock
|
cell line: HeLa
transduction: mock
|
|
| Sample_geo_accession | GSM772589
| | Sample_status | Public on Sep 12 2011
| | Sample_submission_date | Aug 03 2011
| | Sample_last_update_date | Sep 12 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | None
| | Sample_growth_protocol_ch1 | HeLa and TF-1 cells were retrovirally transduced with either mock, wild-type U2AF35 or S34F mutant . The cells were sorted by GFP-marking using a MoFlo® FACS cell sorter (Beckman Coulter) 48 hrs after retoroviral tranduction.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA from cultured cells was isolated with the RNeasy Total RNA kit (Qiagen) using RNase-free DNase set (Qiagen) to reduce contamination of genomic DNA according to the manufacturer’s protocol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Affymetrix starndard
| | Sample_hyb_protocol | Affymetrix starndard
| | Sample_scan_protocol | Affymetrix starndard
| | Sample_data_processing | Raw array signals were processed using Expression Console software (Affymetrix) in which RMA was performed.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Aiko,,Sato-Otsubo
| | Sample_contact_institute | University of Tokyo
| | Sample_contact_address | 7-3-1, Hongo, Bunkyo-ku
| | Sample_contact_city | Tokyo
| | Sample_contact_zip/postal_code | 113-8655
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM772nnn/GSM772589/suppl/GSM772589_Hela_Mock_1_whole3_HG-U133_Plus_2_.110529.rma.chp.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM772nnn/GSM772589/suppl/GSM772589_Hela_Mock_1_whole3_HG-U133_Plus_2_.CEL.gz
| | Sample_series_id | GSE31172
| | Sample_series_id | GSE31173
| | Sample_data_row_count | 54675
| | |
|
GSM772590 | GPL570 |
|
HeLa_WT_rep1
|
HeLa cells, wild-type U2AF35
|
cell line: HeLa
transduction: wild-type U2AF35
|
|
| Sample_geo_accession | GSM772590
| | Sample_status | Public on Sep 12 2011
| | Sample_submission_date | Aug 03 2011
| | Sample_last_update_date | Sep 12 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | None
| | Sample_growth_protocol_ch1 | HeLa and TF-1 cells were retrovirally transduced with either mock, wild-type U2AF35 or S34F mutant . The cells were sorted by GFP-marking using a MoFlo® FACS cell sorter (Beckman Coulter) 48 hrs after retoroviral tranduction.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA from cultured cells was isolated with the RNeasy Total RNA kit (Qiagen) using RNase-free DNase set (Qiagen) to reduce contamination of genomic DNA according to the manufacturer’s protocol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Affymetrix starndard
| | Sample_hyb_protocol | Affymetrix starndard
| | Sample_scan_protocol | Affymetrix starndard
| | Sample_data_processing | Raw array signals were processed using Expression Console software (Affymetrix) in which RMA was performed.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Aiko,,Sato-Otsubo
| | Sample_contact_institute | University of Tokyo
| | Sample_contact_address | 7-3-1, Hongo, Bunkyo-ku
| | Sample_contact_city | Tokyo
| | Sample_contact_zip/postal_code | 113-8655
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM772nnn/GSM772590/suppl/GSM772590_Hela_WT_1_whole1_.110529.rma.chp.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM772nnn/GSM772590/suppl/GSM772590_Hela_WT_1_whole1_.CEL.gz
| | Sample_series_id | GSE31172
| | Sample_series_id | GSE31173
| | Sample_data_row_count | 54675
| | |
|
GSM772591 | GPL570 |
|
HeLa_WT_rep2
|
HeLa cells, wild-type U2AF35
|
cell line: HeLa
transduction: wild-type U2AF35
|
|
| Sample_geo_accession | GSM772591
| | Sample_status | Public on Sep 12 2011
| | Sample_submission_date | Aug 03 2011
| | Sample_last_update_date | Sep 12 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | None
| | Sample_growth_protocol_ch1 | HeLa and TF-1 cells were retrovirally transduced with either mock, wild-type U2AF35 or S34F mutant . The cells were sorted by GFP-marking using a MoFlo® FACS cell sorter (Beckman Coulter) 48 hrs after retoroviral tranduction.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA from cultured cells was isolated with the RNeasy Total RNA kit (Qiagen) using RNase-free DNase set (Qiagen) to reduce contamination of genomic DNA according to the manufacturer’s protocol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Affymetrix starndard
| | Sample_hyb_protocol | Affymetrix starndard
| | Sample_scan_protocol | Affymetrix starndard
| | Sample_data_processing | Raw array signals were processed using Expression Console software (Affymetrix) in which RMA was performed.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Aiko,,Sato-Otsubo
| | Sample_contact_institute | University of Tokyo
| | Sample_contact_address | 7-3-1, Hongo, Bunkyo-ku
| | Sample_contact_city | Tokyo
| | Sample_contact_zip/postal_code | 113-8655
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM772nnn/GSM772591/suppl/GSM772591_Hela_WT_1_whole2_HG-U133_Plus_2_.110529.rma.chp.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM772nnn/GSM772591/suppl/GSM772591_Hela_WT_1_whole2_HG-U133_Plus_2_.CEL.gz
| | Sample_series_id | GSE31172
| | Sample_series_id | GSE31173
| | Sample_data_row_count | 54675
| | |
|
GSM772592 | GPL570 |
|
HeLa_WT_rep3
|
HeLa cells, wild-type U2AF35
|
cell line: HeLa
transduction: wild-type U2AF35
|
|
| Sample_geo_accession | GSM772592
| | Sample_status | Public on Sep 12 2011
| | Sample_submission_date | Aug 03 2011
| | Sample_last_update_date | Sep 12 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | None
| | Sample_growth_protocol_ch1 | HeLa and TF-1 cells were retrovirally transduced with either mock, wild-type U2AF35 or S34F mutant . The cells were sorted by GFP-marking using a MoFlo® FACS cell sorter (Beckman Coulter) 48 hrs after retoroviral tranduction.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA from cultured cells was isolated with the RNeasy Total RNA kit (Qiagen) using RNase-free DNase set (Qiagen) to reduce contamination of genomic DNA according to the manufacturer’s protocol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Affymetrix starndard
| | Sample_hyb_protocol | Affymetrix starndard
| | Sample_scan_protocol | Affymetrix starndard
| | Sample_data_processing | Raw array signals were processed using Expression Console software (Affymetrix) in which RMA was performed.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Aiko,,Sato-Otsubo
| | Sample_contact_institute | University of Tokyo
| | Sample_contact_address | 7-3-1, Hongo, Bunkyo-ku
| | Sample_contact_city | Tokyo
| | Sample_contact_zip/postal_code | 113-8655
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM772nnn/GSM772592/suppl/GSM772592_Hela_WT_1_whole3_HG-U133_Plus_2_.110529.rma.chp.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM772nnn/GSM772592/suppl/GSM772592_Hela_WT_1_whole3_HG-U133_Plus_2_.CEL.gz
| | Sample_series_id | GSE31172
| | Sample_series_id | GSE31173
| | Sample_data_row_count | 54675
| | |
|
GSM772593 | GPL570 |
|
HeLa_S34F_rep1
|
HeLa cells, S34F U2AF35
|
cell line: HeLa
transduction: S34F U2AF35
|
|
| Sample_geo_accession | GSM772593
| | Sample_status | Public on Sep 12 2011
| | Sample_submission_date | Aug 03 2011
| | Sample_last_update_date | Sep 12 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | None
| | Sample_growth_protocol_ch1 | HeLa and TF-1 cells were retrovirally transduced with either mock, wild-type U2AF35 or S34F mutant . The cells were sorted by GFP-marking using a MoFlo® FACS cell sorter (Beckman Coulter) 48 hrs after retoroviral tranduction.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA from cultured cells was isolated with the RNeasy Total RNA kit (Qiagen) using RNase-free DNase set (Qiagen) to reduce contamination of genomic DNA according to the manufacturer’s protocol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Affymetrix starndard
| | Sample_hyb_protocol | Affymetrix starndard
| | Sample_scan_protocol | Affymetrix starndard
| | Sample_data_processing | Raw array signals were processed using Expression Console software (Affymetrix) in which RMA was performed.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Aiko,,Sato-Otsubo
| | Sample_contact_institute | University of Tokyo
| | Sample_contact_address | 7-3-1, Hongo, Bunkyo-ku
| | Sample_contact_city | Tokyo
| | Sample_contact_zip/postal_code | 113-8655
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM772nnn/GSM772593/suppl/GSM772593_Hela_S34F_1_whole1_.110529.rma.chp.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM772nnn/GSM772593/suppl/GSM772593_Hela_S34F_1_whole1_.CEL.gz
| | Sample_series_id | GSE31172
| | Sample_series_id | GSE31173
| | Sample_data_row_count | 54675
| | |
|
GSM772594 | GPL570 |
|
HeLa_S34F_rep2
|
HeLa cells, S34F U2AF35
|
cell line: HeLa
transduction: S34F U2AF35
|
|
| Sample_geo_accession | GSM772594
| | Sample_status | Public on Sep 12 2011
| | Sample_submission_date | Aug 03 2011
| | Sample_last_update_date | Sep 12 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | None
| | Sample_growth_protocol_ch1 | HeLa and TF-1 cells were retrovirally transduced with either mock, wild-type U2AF35 or S34F mutant . The cells were sorted by GFP-marking using a MoFlo® FACS cell sorter (Beckman Coulter) 48 hrs after retoroviral tranduction.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA from cultured cells was isolated with the RNeasy Total RNA kit (Qiagen) using RNase-free DNase set (Qiagen) to reduce contamination of genomic DNA according to the manufacturer’s protocol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Affymetrix starndard
| | Sample_hyb_protocol | Affymetrix starndard
| | Sample_scan_protocol | Affymetrix starndard
| | Sample_data_processing | Raw array signals were processed using Expression Console software (Affymetrix) in which RMA was performed.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Aiko,,Sato-Otsubo
| | Sample_contact_institute | University of Tokyo
| | Sample_contact_address | 7-3-1, Hongo, Bunkyo-ku
| | Sample_contact_city | Tokyo
| | Sample_contact_zip/postal_code | 113-8655
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM772nnn/GSM772594/suppl/GSM772594_Hela_S34F_1_whole2_HG-U133_Plus_2_.110529.rma.chp.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM772nnn/GSM772594/suppl/GSM772594_Hela_S34F_1_whole2_HG-U133_Plus_2_.CEL.gz
| | Sample_series_id | GSE31172
| | Sample_series_id | GSE31173
| | Sample_data_row_count | 54675
| | |
|
GSM772595 | GPL570 |
|
HeLa_S34F_rep3
|
HeLa cells, S34F U2AF35
|
cell line: HeLa
transduction: S34F U2AF35
|
|
| Sample_geo_accession | GSM772595
| | Sample_status | Public on Sep 12 2011
| | Sample_submission_date | Aug 03 2011
| | Sample_last_update_date | Sep 12 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | None
| | Sample_growth_protocol_ch1 | HeLa and TF-1 cells were retrovirally transduced with either mock, wild-type U2AF35 or S34F mutant . The cells were sorted by GFP-marking using a MoFlo® FACS cell sorter (Beckman Coulter) 48 hrs after retoroviral tranduction.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA from cultured cells was isolated with the RNeasy Total RNA kit (Qiagen) using RNase-free DNase set (Qiagen) to reduce contamination of genomic DNA according to the manufacturer’s protocol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Affymetrix starndard
| | Sample_hyb_protocol | Affymetrix starndard
| | Sample_scan_protocol | Affymetrix starndard
| | Sample_data_processing | Raw array signals were processed using Expression Console software (Affymetrix) in which RMA was performed.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Aiko,,Sato-Otsubo
| | Sample_contact_institute | University of Tokyo
| | Sample_contact_address | 7-3-1, Hongo, Bunkyo-ku
| | Sample_contact_city | Tokyo
| | Sample_contact_zip/postal_code | 113-8655
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM772nnn/GSM772595/suppl/GSM772595_Hela_S34F_1_whole3_HG-U133_Plus_2_.110529.rma.chp.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM772nnn/GSM772595/suppl/GSM772595_Hela_S34F_1_whole3_HG-U133_Plus_2_.CEL.gz
| | Sample_series_id | GSE31172
| | Sample_series_id | GSE31173
| | Sample_data_row_count | 54675
| | |
|
GSM772596 | GPL570 |
|
TF1_Mock_rep1
|
TF1 cells, mock
|
cell line: TF-1
transduction: mock
|
|
| Sample_geo_accession | GSM772596
| | Sample_status | Public on Sep 12 2011
| | Sample_submission_date | Aug 03 2011
| | Sample_last_update_date | Sep 12 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | None
| | Sample_growth_protocol_ch1 | HeLa and TF-1 cells were retrovirally transduced with either mock, wild-type U2AF35 or S34F mutant . The cells were sorted by GFP-marking using a MoFlo® FACS cell sorter (Beckman Coulter) 48 hrs after retoroviral tranduction.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA from cultured cells was isolated with the RNeasy Total RNA kit (Qiagen) using RNase-free DNase set (Qiagen) to reduce contamination of genomic DNA according to the manufacturer’s protocol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Affymetrix starndard
| | Sample_hyb_protocol | Affymetrix starndard
| | Sample_scan_protocol | Affymetrix starndard
| | Sample_data_processing | Raw array signals were processed using Expression Console software (Affymetrix) in which RMA was performed.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Aiko,,Sato-Otsubo
| | Sample_contact_institute | University of Tokyo
| | Sample_contact_address | 7-3-1, Hongo, Bunkyo-ku
| | Sample_contact_city | Tokyo
| | Sample_contact_zip/postal_code | 113-8655
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM772nnn/GSM772596/suppl/GSM772596_TF1_Mock_1_whole1_HG-U133_Plus_2_.110529.rma.chp.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM772nnn/GSM772596/suppl/GSM772596_TF1_Mock_1_whole1_HG-U133_Plus_2_.CEL.gz
| | Sample_series_id | GSE31172
| | Sample_series_id | GSE31173
| | Sample_data_row_count | 54675
| | |
|
GSM772597 | GPL570 |
|
TF1_Mock_rep2
|
TF1 cells, mock
|
cell line: TF-1
transduction: mock
|
|
| Sample_geo_accession | GSM772597
| | Sample_status | Public on Sep 12 2011
| | Sample_submission_date | Aug 03 2011
| | Sample_last_update_date | Sep 12 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | None
| | Sample_growth_protocol_ch1 | HeLa and TF-1 cells were retrovirally transduced with either mock, wild-type U2AF35 or S34F mutant . The cells were sorted by GFP-marking using a MoFlo® FACS cell sorter (Beckman Coulter) 48 hrs after retoroviral tranduction.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA from cultured cells was isolated with the RNeasy Total RNA kit (Qiagen) using RNase-free DNase set (Qiagen) to reduce contamination of genomic DNA according to the manufacturer’s protocol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Affymetrix starndard
| | Sample_hyb_protocol | Affymetrix starndard
| | Sample_scan_protocol | Affymetrix starndard
| | Sample_data_processing | Raw array signals were processed using Expression Console software (Affymetrix) in which RMA was performed.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Aiko,,Sato-Otsubo
| | Sample_contact_institute | University of Tokyo
| | Sample_contact_address | 7-3-1, Hongo, Bunkyo-ku
| | Sample_contact_city | Tokyo
| | Sample_contact_zip/postal_code | 113-8655
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM772nnn/GSM772597/suppl/GSM772597_TF1_mock_1_whole2_.110529.rma.chp.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM772nnn/GSM772597/suppl/GSM772597_TF1_mock_1_whole2_.CEL.gz
| | Sample_series_id | GSE31172
| | Sample_series_id | GSE31173
| | Sample_data_row_count | 54675
| | |
|
GSM772598 | GPL570 |
|
TF1_Mock_rep3
|
TF1 cells, mock
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cell line: TF-1
transduction: mock
|
|
| Sample_geo_accession | GSM772598
| | Sample_status | Public on Sep 12 2011
| | Sample_submission_date | Aug 03 2011
| | Sample_last_update_date | Sep 12 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | None
| | Sample_growth_protocol_ch1 | HeLa and TF-1 cells were retrovirally transduced with either mock, wild-type U2AF35 or S34F mutant . The cells were sorted by GFP-marking using a MoFlo® FACS cell sorter (Beckman Coulter) 48 hrs after retoroviral tranduction.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA from cultured cells was isolated with the RNeasy Total RNA kit (Qiagen) using RNase-free DNase set (Qiagen) to reduce contamination of genomic DNA according to the manufacturer’s protocol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Affymetrix starndard
| | Sample_hyb_protocol | Affymetrix starndard
| | Sample_scan_protocol | Affymetrix starndard
| | Sample_data_processing | Raw array signals were processed using Expression Console software (Affymetrix) in which RMA was performed.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Aiko,,Sato-Otsubo
| | Sample_contact_institute | University of Tokyo
| | Sample_contact_address | 7-3-1, Hongo, Bunkyo-ku
| | Sample_contact_city | Tokyo
| | Sample_contact_zip/postal_code | 113-8655
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM772nnn/GSM772598/suppl/GSM772598_TF1_mock_1_whole3_.110529.rma.chp.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM772nnn/GSM772598/suppl/GSM772598_TF1_mock_1_whole3_.CEL.gz
| | Sample_series_id | GSE31172
| | Sample_series_id | GSE31173
| | Sample_data_row_count | 54675
| | |
|
GSM772599 | GPL570 |
|
TF1_WT_rep1
|
TF1 cells, wild-type U2AF35
|
cell line: TF-1
transduction: wild-type U2AF35
|
|
| Sample_geo_accession | GSM772599
| | Sample_status | Public on Sep 12 2011
| | Sample_submission_date | Aug 03 2011
| | Sample_last_update_date | Sep 12 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | None
| | Sample_growth_protocol_ch1 | HeLa and TF-1 cells were retrovirally transduced with either mock, wild-type U2AF35 or S34F mutant . The cells were sorted by GFP-marking using a MoFlo® FACS cell sorter (Beckman Coulter) 48 hrs after retoroviral tranduction.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA from cultured cells was isolated with the RNeasy Total RNA kit (Qiagen) using RNase-free DNase set (Qiagen) to reduce contamination of genomic DNA according to the manufacturer’s protocol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Affymetrix starndard
| | Sample_hyb_protocol | Affymetrix starndard
| | Sample_scan_protocol | Affymetrix starndard
| | Sample_data_processing | Raw array signals were processed using Expression Console software (Affymetrix) in which RMA was performed.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Aiko,,Sato-Otsubo
| | Sample_contact_institute | University of Tokyo
| | Sample_contact_address | 7-3-1, Hongo, Bunkyo-ku
| | Sample_contact_city | Tokyo
| | Sample_contact_zip/postal_code | 113-8655
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM772nnn/GSM772599/suppl/GSM772599_TF1_WT_1_whole1_HG-U133_Plus_2_.110529.rma.chp.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM772nnn/GSM772599/suppl/GSM772599_TF1_WT_1_whole1_HG-U133_Plus_2_.CEL.gz
| | Sample_series_id | GSE31172
| | Sample_series_id | GSE31173
| | Sample_data_row_count | 54675
| | |
|
GSM772600 | GPL570 |
|
TF1_WT_rep2
|
TF1 cells, wild-type U2AF35
|
cell line: TF-1
transduction: wild-type U2AF35
|
|
| Sample_geo_accession | GSM772600
| | Sample_status | Public on Sep 12 2011
| | Sample_submission_date | Aug 03 2011
| | Sample_last_update_date | Sep 12 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | None
| | Sample_growth_protocol_ch1 | HeLa and TF-1 cells were retrovirally transduced with either mock, wild-type U2AF35 or S34F mutant . The cells were sorted by GFP-marking using a MoFlo® FACS cell sorter (Beckman Coulter) 48 hrs after retoroviral tranduction.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA from cultured cells was isolated with the RNeasy Total RNA kit (Qiagen) using RNase-free DNase set (Qiagen) to reduce contamination of genomic DNA according to the manufacturer’s protocol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Affymetrix starndard
| | Sample_hyb_protocol | Affymetrix starndard
| | Sample_scan_protocol | Affymetrix starndard
| | Sample_data_processing | Raw array signals were processed using Expression Console software (Affymetrix) in which RMA was performed.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Aiko,,Sato-Otsubo
| | Sample_contact_institute | University of Tokyo
| | Sample_contact_address | 7-3-1, Hongo, Bunkyo-ku
| | Sample_contact_city | Tokyo
| | Sample_contact_zip/postal_code | 113-8655
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM772nnn/GSM772600/suppl/GSM772600_TF1_WT_1_whole2_.110529.rma.chp.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM772nnn/GSM772600/suppl/GSM772600_TF1_WT_1_whole2_.CEL.gz
| | Sample_series_id | GSE31172
| | Sample_series_id | GSE31173
| | Sample_data_row_count | 54675
| | |
|
GSM772601 | GPL570 |
|
TF1_WT_rep3
|
TF1 cells, wild-type U2AF35
|
cell line: TF-1
transduction: wild-type U2AF35
|
|
| Sample_geo_accession | GSM772601
| | Sample_status | Public on Sep 12 2011
| | Sample_submission_date | Aug 03 2011
| | Sample_last_update_date | Sep 12 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | None
| | Sample_growth_protocol_ch1 | HeLa and TF-1 cells were retrovirally transduced with either mock, wild-type U2AF35 or S34F mutant . The cells were sorted by GFP-marking using a MoFlo® FACS cell sorter (Beckman Coulter) 48 hrs after retoroviral tranduction.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA from cultured cells was isolated with the RNeasy Total RNA kit (Qiagen) using RNase-free DNase set (Qiagen) to reduce contamination of genomic DNA according to the manufacturer’s protocol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Affymetrix starndard
| | Sample_hyb_protocol | Affymetrix starndard
| | Sample_scan_protocol | Affymetrix starndard
| | Sample_data_processing | Raw array signals were processed using Expression Console software (Affymetrix) in which RMA was performed.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Aiko,,Sato-Otsubo
| | Sample_contact_institute | University of Tokyo
| | Sample_contact_address | 7-3-1, Hongo, Bunkyo-ku
| | Sample_contact_city | Tokyo
| | Sample_contact_zip/postal_code | 113-8655
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM772nnn/GSM772601/suppl/GSM772601_TF1_WT_1_whole3_.110529.rma.chp.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM772nnn/GSM772601/suppl/GSM772601_TF1_WT_1_whole3_.CEL.gz
| | Sample_series_id | GSE31172
| | Sample_series_id | GSE31173
| | Sample_data_row_count | 54675
| | |
|
GSM772602 | GPL570 |
|
TF1_S34F_rep1
|
TF1 cells, S34F U2AF35
|
cell line: TF-1
transduction: S34F U2AF35
|
|
| Sample_geo_accession | GSM772602
| | Sample_status | Public on Sep 12 2011
| | Sample_submission_date | Aug 03 2011
| | Sample_last_update_date | Sep 12 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | None
| | Sample_growth_protocol_ch1 | HeLa and TF-1 cells were retrovirally transduced with either mock, wild-type U2AF35 or S34F mutant . The cells were sorted by GFP-marking using a MoFlo® FACS cell sorter (Beckman Coulter) 48 hrs after retoroviral tranduction.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA from cultured cells was isolated with the RNeasy Total RNA kit (Qiagen) using RNase-free DNase set (Qiagen) to reduce contamination of genomic DNA according to the manufacturer’s protocol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Affymetrix starndard
| | Sample_hyb_protocol | Affymetrix starndard
| | Sample_scan_protocol | Affymetrix starndard
| | Sample_data_processing | Raw array signals were processed using Expression Console software (Affymetrix) in which RMA was performed.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Aiko,,Sato-Otsubo
| | Sample_contact_institute | University of Tokyo
| | Sample_contact_address | 7-3-1, Hongo, Bunkyo-ku
| | Sample_contact_city | Tokyo
| | Sample_contact_zip/postal_code | 113-8655
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM772nnn/GSM772602/suppl/GSM772602_TF1_S34F_1_whole1_HG-U133_Plus_2_.110529.rma.chp.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM772nnn/GSM772602/suppl/GSM772602_TF1_S34F_1_whole1_HG-U133_Plus_2_.CEL.gz
| | Sample_series_id | GSE31172
| | Sample_series_id | GSE31173
| | Sample_data_row_count | 54675
| | |
|
GSM772603 | GPL570 |
|
TF1_S34F_rep2
|
TF1 cells, S34F U2AF35
|
cell line: TF-1
transduction: S34F U2AF35
|
|
| Sample_geo_accession | GSM772603
| | Sample_status | Public on Sep 12 2011
| | Sample_submission_date | Aug 03 2011
| | Sample_last_update_date | Sep 12 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | None
| | Sample_growth_protocol_ch1 | HeLa and TF-1 cells were retrovirally transduced with either mock, wild-type U2AF35 or S34F mutant . The cells were sorted by GFP-marking using a MoFlo® FACS cell sorter (Beckman Coulter) 48 hrs after retoroviral tranduction.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA from cultured cells was isolated with the RNeasy Total RNA kit (Qiagen) using RNase-free DNase set (Qiagen) to reduce contamination of genomic DNA according to the manufacturer’s protocol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Affymetrix starndard
| | Sample_hyb_protocol | Affymetrix starndard
| | Sample_scan_protocol | Affymetrix starndard
| | Sample_data_processing | Raw array signals were processed using Expression Console software (Affymetrix) in which RMA was performed.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Aiko,,Sato-Otsubo
| | Sample_contact_institute | University of Tokyo
| | Sample_contact_address | 7-3-1, Hongo, Bunkyo-ku
| | Sample_contact_city | Tokyo
| | Sample_contact_zip/postal_code | 113-8655
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM772nnn/GSM772603/suppl/GSM772603_TF1_S34F_1_whole2_.110529.rma.chp.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM772nnn/GSM772603/suppl/GSM772603_TF1_S34F_1_whole2_.CEL.gz
| | Sample_series_id | GSE31172
| | Sample_series_id | GSE31173
| | Sample_data_row_count | 54675
| | |
|
GSM772604 | GPL570 |
|
TF1_S34F_rep3
|
TF1 cells, S34F U2AF35
|
cell line: TF-1
transduction: S34F U2AF35
|
|
| Sample_geo_accession | GSM772604
| | Sample_status | Public on Sep 12 2011
| | Sample_submission_date | Aug 03 2011
| | Sample_last_update_date | Sep 12 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | None
| | Sample_growth_protocol_ch1 | HeLa and TF-1 cells were retrovirally transduced with either mock, wild-type U2AF35 or S34F mutant . The cells were sorted by GFP-marking using a MoFlo® FACS cell sorter (Beckman Coulter) 48 hrs after retoroviral tranduction.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA from cultured cells was isolated with the RNeasy Total RNA kit (Qiagen) using RNase-free DNase set (Qiagen) to reduce contamination of genomic DNA according to the manufacturer’s protocol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Affymetrix starndard
| | Sample_hyb_protocol | Affymetrix starndard
| | Sample_scan_protocol | Affymetrix starndard
| | Sample_data_processing | Raw array signals were processed using Expression Console software (Affymetrix) in which RMA was performed.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Aiko,,Sato-Otsubo
| | Sample_contact_institute | University of Tokyo
| | Sample_contact_address | 7-3-1, Hongo, Bunkyo-ku
| | Sample_contact_city | Tokyo
| | Sample_contact_zip/postal_code | 113-8655
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM772nnn/GSM772604/suppl/GSM772604_TF1_S34F_1_whole3_.110529.rma.chp.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM772nnn/GSM772604/suppl/GSM772604_TF1_S34F_1_whole3_.CEL.gz
| | Sample_series_id | GSE31172
| | Sample_series_id | GSE31173
| | Sample_data_row_count | 54675
| | |
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