Search results for the GEO ID: GSE31229  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM774179 | GPL570 |
|
CLB-GA untreated
|
CLB-GA neuroblastoma cell line
|
treatment: untreated
mycn: not amplified
|
hyb509.CEL
|
| Sample_geo_accession | GSM774179
| | Sample_status | Public on Sep 13 2012
| | Sample_submission_date | Aug 05 2011
| | Sample_last_update_date | Sep 13 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Treatment with DAC (2'-deoxy-5'-cytydine): 3 micromolars for 3 days
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was extracted using Qiagen RNEasy kit
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotin labelling was performed according to manufacturer's protocol
| | Sample_hyb_protocol | Hybridisation was performed according to the manufacturer's protocol
| | Sample_scan_protocol | Scanning was performed according to the manufacturer's protocol
| | Sample_data_processing | Data was processed in R/Bioconductor by affy, simpleaffy packages. Quality was controlled (5'-3' degradation plots; boxplots; image scan inspection). Data was normalized using just.gcrma (GC-RMA) and P/M/A calls were determined by using MAS 5.0
| | Sample_platform_id | GPL570
| | Sample_contact_name | Maté,,Ongenaert
| | Sample_contact_email | mate.ongenaert@ugent.be
| | Sample_contact_laboratory | Lab. Cytometry
| | Sample_contact_department | Center for Medical Genetics
| | Sample_contact_institute | Ghent University
| | Sample_contact_address | De Pintelaan 185 - MRB
| | Sample_contact_city | Ghent
| | Sample_contact_zip/postal_code | 9000
| | Sample_contact_country | Belgium
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM774nnn/GSM774179/suppl/GSM774179.CEL.gz
| | Sample_series_id | GSE31229
| | Sample_series_id | GSE31355
| | Sample_data_row_count | 54675
| | |
|
GSM774180 | GPL570 |
|
CLB-GA DAC treated
|
CLB-GA neuroblastoma cell line
|
treatment: DACtreated
mycn: not amplified
|
hyb510.CEL
|
| Sample_geo_accession | GSM774180
| | Sample_status | Public on Sep 13 2012
| | Sample_submission_date | Aug 05 2011
| | Sample_last_update_date | Sep 13 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Treatment with DAC (2'-deoxy-5'-cytydine): 3 micromolars for 3 days
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was extracted using Qiagen RNEasy kit
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotin labelling was performed according to manufacturer's protocol
| | Sample_hyb_protocol | Hybridisation was performed according to the manufacturer's protocol
| | Sample_scan_protocol | Scanning was performed according to the manufacturer's protocol
| | Sample_data_processing | Data was processed in R/Bioconductor by affy, simpleaffy packages. Quality was controlled (5'-3' degradation plots; boxplots; image scan inspection). Data was normalized using just.gcrma (GC-RMA) and P/M/A calls were determined by using MAS 5.0
| | Sample_platform_id | GPL570
| | Sample_contact_name | Maté,,Ongenaert
| | Sample_contact_email | mate.ongenaert@ugent.be
| | Sample_contact_laboratory | Lab. Cytometry
| | Sample_contact_department | Center for Medical Genetics
| | Sample_contact_institute | Ghent University
| | Sample_contact_address | De Pintelaan 185 - MRB
| | Sample_contact_city | Ghent
| | Sample_contact_zip/postal_code | 9000
| | Sample_contact_country | Belgium
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM774nnn/GSM774180/suppl/GSM774180.CEL.gz
| | Sample_series_id | GSE31229
| | Sample_series_id | GSE31355
| | Sample_data_row_count | 54675
| | |
|
GSM774181 | GPL570 |
|
IMR-32 untreated
|
IMR-32 neuroblastoma cell line
|
treatment: untreated
mycn: amplified
|
hyb511.CEL
|
| Sample_geo_accession | GSM774181
| | Sample_status | Public on Sep 13 2012
| | Sample_submission_date | Aug 05 2011
| | Sample_last_update_date | Sep 13 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Treatment with DAC (2'-deoxy-5'-cytydine): 3 micromolars for 3 days
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was extracted using Qiagen RNEasy kit
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotin labelling was performed according to manufacturer's protocol
| | Sample_hyb_protocol | Hybridisation was performed according to the manufacturer's protocol
| | Sample_scan_protocol | Scanning was performed according to the manufacturer's protocol
| | Sample_data_processing | Data was processed in R/Bioconductor by affy, simpleaffy packages. Quality was controlled (5'-3' degradation plots; boxplots; image scan inspection). Data was normalized using just.gcrma (GC-RMA) and P/M/A calls were determined by using MAS 5.0
| | Sample_platform_id | GPL570
| | Sample_contact_name | Maté,,Ongenaert
| | Sample_contact_email | mate.ongenaert@ugent.be
| | Sample_contact_laboratory | Lab. Cytometry
| | Sample_contact_department | Center for Medical Genetics
| | Sample_contact_institute | Ghent University
| | Sample_contact_address | De Pintelaan 185 - MRB
| | Sample_contact_city | Ghent
| | Sample_contact_zip/postal_code | 9000
| | Sample_contact_country | Belgium
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM774nnn/GSM774181/suppl/GSM774181.CEL.gz
| | Sample_series_id | GSE31229
| | Sample_series_id | GSE31355
| | Sample_data_row_count | 54675
| | |
|
GSM774182 | GPL570 |
|
IMR-32 DAC treated
|
IMR-32 neuroblastoma cell line
|
treatment: DACtreated
mycn: amplified
|
hyb512.CEL
|
| Sample_geo_accession | GSM774182
| | Sample_status | Public on Sep 13 2012
| | Sample_submission_date | Aug 05 2011
| | Sample_last_update_date | Sep 13 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Treatment with DAC (2'-deoxy-5'-cytydine): 3 micromolars for 3 days
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was extracted using Qiagen RNEasy kit
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotin labelling was performed according to manufacturer's protocol
| | Sample_hyb_protocol | Hybridisation was performed according to the manufacturer's protocol
| | Sample_scan_protocol | Scanning was performed according to the manufacturer's protocol
| | Sample_data_processing | Data was processed in R/Bioconductor by affy, simpleaffy packages. Quality was controlled (5'-3' degradation plots; boxplots; image scan inspection). Data was normalized using just.gcrma (GC-RMA) and P/M/A calls were determined by using MAS 5.0
| | Sample_platform_id | GPL570
| | Sample_contact_name | Maté,,Ongenaert
| | Sample_contact_email | mate.ongenaert@ugent.be
| | Sample_contact_laboratory | Lab. Cytometry
| | Sample_contact_department | Center for Medical Genetics
| | Sample_contact_institute | Ghent University
| | Sample_contact_address | De Pintelaan 185 - MRB
| | Sample_contact_city | Ghent
| | Sample_contact_zip/postal_code | 9000
| | Sample_contact_country | Belgium
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM774nnn/GSM774182/suppl/GSM774182.CEL.gz
| | Sample_series_id | GSE31229
| | Sample_series_id | GSE31355
| | Sample_data_row_count | 54675
| | |
|
GSM774183 | GPL570 |
|
SH-SY5Y untreated
|
SH-SY5Y neuroblastoma cell line
|
treatment: untreated
mycn: not amplified
|
hyb513.CEL
|
| Sample_geo_accession | GSM774183
| | Sample_status | Public on Sep 13 2012
| | Sample_submission_date | Aug 05 2011
| | Sample_last_update_date | Sep 13 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Treatment with DAC (2'-deoxy-5'-cytydine): 3 micromolars for 3 days
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was extracted using Qiagen RNEasy kit
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotin labelling was performed according to manufacturer's protocol
| | Sample_hyb_protocol | Hybridisation was performed according to the manufacturer's protocol
| | Sample_scan_protocol | Scanning was performed according to the manufacturer's protocol
| | Sample_data_processing | Data was processed in R/Bioconductor by affy, simpleaffy packages. Quality was controlled (5'-3' degradation plots; boxplots; image scan inspection). Data was normalized using just.gcrma (GC-RMA) and P/M/A calls were determined by using MAS 5.0
| | Sample_platform_id | GPL570
| | Sample_contact_name | Maté,,Ongenaert
| | Sample_contact_email | mate.ongenaert@ugent.be
| | Sample_contact_laboratory | Lab. Cytometry
| | Sample_contact_department | Center for Medical Genetics
| | Sample_contact_institute | Ghent University
| | Sample_contact_address | De Pintelaan 185 - MRB
| | Sample_contact_city | Ghent
| | Sample_contact_zip/postal_code | 9000
| | Sample_contact_country | Belgium
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM774nnn/GSM774183/suppl/GSM774183.CEL.gz
| | Sample_series_id | GSE31229
| | Sample_series_id | GSE31355
| | Sample_data_row_count | 54675
| | |
|
GSM774184 | GPL570 |
|
SH-SY5Y DAC treated
|
SH-SY5Y neuroblastoma cell line
|
treatment: DACtreated
mycn: not amplified
|
hyb514.CEL
|
| Sample_geo_accession | GSM774184
| | Sample_status | Public on Sep 13 2012
| | Sample_submission_date | Aug 05 2011
| | Sample_last_update_date | Sep 13 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Treatment with DAC (2'-deoxy-5'-cytydine): 3 micromolars for 3 days
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was extracted using Qiagen RNEasy kit
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotin labelling was performed according to manufacturer's protocol
| | Sample_hyb_protocol | Hybridisation was performed according to the manufacturer's protocol
| | Sample_scan_protocol | Scanning was performed according to the manufacturer's protocol
| | Sample_data_processing | Data was processed in R/Bioconductor by affy, simpleaffy packages. Quality was controlled (5'-3' degradation plots; boxplots; image scan inspection). Data was normalized using just.gcrma (GC-RMA) and P/M/A calls were determined by using MAS 5.0
| | Sample_platform_id | GPL570
| | Sample_contact_name | Maté,,Ongenaert
| | Sample_contact_email | mate.ongenaert@ugent.be
| | Sample_contact_laboratory | Lab. Cytometry
| | Sample_contact_department | Center for Medical Genetics
| | Sample_contact_institute | Ghent University
| | Sample_contact_address | De Pintelaan 185 - MRB
| | Sample_contact_city | Ghent
| | Sample_contact_zip/postal_code | 9000
| | Sample_contact_country | Belgium
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM774nnn/GSM774184/suppl/GSM774184.CEL.gz
| | Sample_series_id | GSE31229
| | Sample_series_id | GSE31355
| | Sample_data_row_count | 54675
| | |
|
GSM774185 | GPL570 |
|
N206 untreated
|
N206 neuroblastoma cell line
|
treatment: untreated
mycn: amplified
|
hyb515.CEL
|
| Sample_geo_accession | GSM774185
| | Sample_status | Public on Sep 13 2012
| | Sample_submission_date | Aug 05 2011
| | Sample_last_update_date | Sep 13 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Treatment with DAC (2'-deoxy-5'-cytydine): 3 micromolars for 3 days
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was extracted using Qiagen RNEasy kit
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotin labelling was performed according to manufacturer's protocol
| | Sample_hyb_protocol | Hybridisation was performed according to the manufacturer's protocol
| | Sample_scan_protocol | Scanning was performed according to the manufacturer's protocol
| | Sample_data_processing | Data was processed in R/Bioconductor by affy, simpleaffy packages. Quality was controlled (5'-3' degradation plots; boxplots; image scan inspection). Data was normalized using just.gcrma (GC-RMA) and P/M/A calls were determined by using MAS 5.0
| | Sample_platform_id | GPL570
| | Sample_contact_name | Maté,,Ongenaert
| | Sample_contact_email | mate.ongenaert@ugent.be
| | Sample_contact_laboratory | Lab. Cytometry
| | Sample_contact_department | Center for Medical Genetics
| | Sample_contact_institute | Ghent University
| | Sample_contact_address | De Pintelaan 185 - MRB
| | Sample_contact_city | Ghent
| | Sample_contact_zip/postal_code | 9000
| | Sample_contact_country | Belgium
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM774nnn/GSM774185/suppl/GSM774185.CEL.gz
| | Sample_series_id | GSE31229
| | Sample_series_id | GSE31355
| | Sample_data_row_count | 54675
| | |
|
GSM774186 | GPL570 |
|
N206 DAC treated
|
N206 neuroblastoma cell line
|
treatment: DACtreated
mycn: amplified
|
hyb516.CEL
|
| Sample_geo_accession | GSM774186
| | Sample_status | Public on Sep 13 2012
| | Sample_submission_date | Aug 05 2011
| | Sample_last_update_date | Sep 13 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Treatment with DAC (2'-deoxy-5'-cytydine): 3 micromolars for 3 days
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was extracted using Qiagen RNEasy kit
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotin labelling was performed according to manufacturer's protocol
| | Sample_hyb_protocol | Hybridisation was performed according to the manufacturer's protocol
| | Sample_scan_protocol | Scanning was performed according to the manufacturer's protocol
| | Sample_data_processing | Data was processed in R/Bioconductor by affy, simpleaffy packages. Quality was controlled (5'-3' degradation plots; boxplots; image scan inspection). Data was normalized using just.gcrma (GC-RMA) and P/M/A calls were determined by using MAS 5.0
| | Sample_platform_id | GPL570
| | Sample_contact_name | Maté,,Ongenaert
| | Sample_contact_email | mate.ongenaert@ugent.be
| | Sample_contact_laboratory | Lab. Cytometry
| | Sample_contact_department | Center for Medical Genetics
| | Sample_contact_institute | Ghent University
| | Sample_contact_address | De Pintelaan 185 - MRB
| | Sample_contact_city | Ghent
| | Sample_contact_zip/postal_code | 9000
| | Sample_contact_country | Belgium
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM774nnn/GSM774186/suppl/GSM774186.CEL.gz
| | Sample_series_id | GSE31229
| | Sample_series_id | GSE31355
| | Sample_data_row_count | 54675
| | |
|
GSM774187 | GPL570 |
|
CHP-902R untreated
|
CHP-902R neuroblastoma cell line
|
treatment: untreated
mycn: amplified
|
hyb517.CEL
|
| Sample_geo_accession | GSM774187
| | Sample_status | Public on Sep 13 2012
| | Sample_submission_date | Aug 05 2011
| | Sample_last_update_date | Sep 13 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Treatment with DAC (2'-deoxy-5'-cytydine): 3 micromolars for 3 days
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was extracted using Qiagen RNEasy kit
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotin labelling was performed according to manufacturer's protocol
| | Sample_hyb_protocol | Hybridisation was performed according to the manufacturer's protocol
| | Sample_scan_protocol | Scanning was performed according to the manufacturer's protocol
| | Sample_data_processing | Data was processed in R/Bioconductor by affy, simpleaffy packages. Quality was controlled (5'-3' degradation plots; boxplots; image scan inspection). Data was normalized using just.gcrma (GC-RMA) and P/M/A calls were determined by using MAS 5.0
| | Sample_platform_id | GPL570
| | Sample_contact_name | Maté,,Ongenaert
| | Sample_contact_email | mate.ongenaert@ugent.be
| | Sample_contact_laboratory | Lab. Cytometry
| | Sample_contact_department | Center for Medical Genetics
| | Sample_contact_institute | Ghent University
| | Sample_contact_address | De Pintelaan 185 - MRB
| | Sample_contact_city | Ghent
| | Sample_contact_zip/postal_code | 9000
| | Sample_contact_country | Belgium
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM774nnn/GSM774187/suppl/GSM774187.CEL.gz
| | Sample_series_id | GSE31229
| | Sample_series_id | GSE31355
| | Sample_data_row_count | 54675
| | |
|
GSM774188 | GPL570 |
|
CHP-902R DAC treated
|
CHP-902R neuroblastoma cell line
|
treatment: DACtreated
mycn: amplified
|
hyb518.CEL
|
| Sample_geo_accession | GSM774188
| | Sample_status | Public on Sep 13 2012
| | Sample_submission_date | Aug 05 2011
| | Sample_last_update_date | Sep 13 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Treatment with DAC (2'-deoxy-5'-cytydine): 3 micromolars for 3 days
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was extracted using Qiagen RNEasy kit
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotin labelling was performed according to manufacturer's protocol
| | Sample_hyb_protocol | Hybridisation was performed according to the manufacturer's protocol
| | Sample_scan_protocol | Scanning was performed according to the manufacturer's protocol
| | Sample_data_processing | Data was processed in R/Bioconductor by affy, simpleaffy packages. Quality was controlled (5'-3' degradation plots; boxplots; image scan inspection). Data was normalized using just.gcrma (GC-RMA) and P/M/A calls were determined by using MAS 5.0
| | Sample_platform_id | GPL570
| | Sample_contact_name | Maté,,Ongenaert
| | Sample_contact_email | mate.ongenaert@ugent.be
| | Sample_contact_laboratory | Lab. Cytometry
| | Sample_contact_department | Center for Medical Genetics
| | Sample_contact_institute | Ghent University
| | Sample_contact_address | De Pintelaan 185 - MRB
| | Sample_contact_city | Ghent
| | Sample_contact_zip/postal_code | 9000
| | Sample_contact_country | Belgium
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM774nnn/GSM774188/suppl/GSM774188.CEL.gz
| | Sample_series_id | GSE31229
| | Sample_series_id | GSE31355
| | Sample_data_row_count | 54675
| | |
|
GSM774189 | GPL570 |
|
LAN-2 untreated
|
LAN-2 neuroblastoma cell line
|
treatment: untreated
mycn: amplified
|
hyb519.CEL
|
| Sample_geo_accession | GSM774189
| | Sample_status | Public on Sep 13 2012
| | Sample_submission_date | Aug 05 2011
| | Sample_last_update_date | Sep 13 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Treatment with DAC (2'-deoxy-5'-cytydine): 3 micromolars for 3 days
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was extracted using Qiagen RNEasy kit
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotin labelling was performed according to manufacturer's protocol
| | Sample_hyb_protocol | Hybridisation was performed according to the manufacturer's protocol
| | Sample_scan_protocol | Scanning was performed according to the manufacturer's protocol
| | Sample_data_processing | Data was processed in R/Bioconductor by affy, simpleaffy packages. Quality was controlled (5'-3' degradation plots; boxplots; image scan inspection). Data was normalized using just.gcrma (GC-RMA) and P/M/A calls were determined by using MAS 5.0
| | Sample_platform_id | GPL570
| | Sample_contact_name | Maté,,Ongenaert
| | Sample_contact_email | mate.ongenaert@ugent.be
| | Sample_contact_laboratory | Lab. Cytometry
| | Sample_contact_department | Center for Medical Genetics
| | Sample_contact_institute | Ghent University
| | Sample_contact_address | De Pintelaan 185 - MRB
| | Sample_contact_city | Ghent
| | Sample_contact_zip/postal_code | 9000
| | Sample_contact_country | Belgium
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM774nnn/GSM774189/suppl/GSM774189.CEL.gz
| | Sample_series_id | GSE31229
| | Sample_series_id | GSE31355
| | Sample_data_row_count | 54675
| | |
|
GSM774190 | GPL570 |
|
LAN-2 DAC treated
|
LAN-2 neuroblastoma cell line
|
treatment: DACtreated
mycn: amplified
|
hyb520.CEL
|
| Sample_geo_accession | GSM774190
| | Sample_status | Public on Sep 13 2012
| | Sample_submission_date | Aug 05 2011
| | Sample_last_update_date | Sep 13 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Treatment with DAC (2'-deoxy-5'-cytydine): 3 micromolars for 3 days
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was extracted using Qiagen RNEasy kit
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotin labelling was performed according to manufacturer's protocol
| | Sample_hyb_protocol | Hybridisation was performed according to the manufacturer's protocol
| | Sample_scan_protocol | Scanning was performed according to the manufacturer's protocol
| | Sample_data_processing | Data was processed in R/Bioconductor by affy, simpleaffy packages. Quality was controlled (5'-3' degradation plots; boxplots; image scan inspection). Data was normalized using just.gcrma (GC-RMA) and P/M/A calls were determined by using MAS 5.0
| | Sample_platform_id | GPL570
| | Sample_contact_name | Maté,,Ongenaert
| | Sample_contact_email | mate.ongenaert@ugent.be
| | Sample_contact_laboratory | Lab. Cytometry
| | Sample_contact_department | Center for Medical Genetics
| | Sample_contact_institute | Ghent University
| | Sample_contact_address | De Pintelaan 185 - MRB
| | Sample_contact_city | Ghent
| | Sample_contact_zip/postal_code | 9000
| | Sample_contact_country | Belgium
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM774nnn/GSM774190/suppl/GSM774190.CEL.gz
| | Sample_series_id | GSE31229
| | Sample_series_id | GSE31355
| | Sample_data_row_count | 54675
| | |
|
GSM774191 | GPL570 |
|
SK-N-AS untreated
|
SK-N-AS neuroblastoma cell line
|
treatment: untreated
mycn: not amplified
|
hyb521.CEL
|
| Sample_geo_accession | GSM774191
| | Sample_status | Public on Sep 13 2012
| | Sample_submission_date | Aug 05 2011
| | Sample_last_update_date | Sep 13 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Treatment with DAC (2'-deoxy-5'-cytydine): 3 micromolars for 3 days
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was extracted using Qiagen RNEasy kit
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotin labelling was performed according to manufacturer's protocol
| | Sample_hyb_protocol | Hybridisation was performed according to the manufacturer's protocol
| | Sample_scan_protocol | Scanning was performed according to the manufacturer's protocol
| | Sample_data_processing | Data was processed in R/Bioconductor by affy, simpleaffy packages. Quality was controlled (5'-3' degradation plots; boxplots; image scan inspection). Data was normalized using just.gcrma (GC-RMA) and P/M/A calls were determined by using MAS 5.0
| | Sample_platform_id | GPL570
| | Sample_contact_name | Maté,,Ongenaert
| | Sample_contact_email | mate.ongenaert@ugent.be
| | Sample_contact_laboratory | Lab. Cytometry
| | Sample_contact_department | Center for Medical Genetics
| | Sample_contact_institute | Ghent University
| | Sample_contact_address | De Pintelaan 185 - MRB
| | Sample_contact_city | Ghent
| | Sample_contact_zip/postal_code | 9000
| | Sample_contact_country | Belgium
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM774nnn/GSM774191/suppl/GSM774191.CEL.gz
| | Sample_series_id | GSE31229
| | Sample_series_id | GSE31355
| | Sample_data_row_count | 54675
| | |
|
GSM774192 | GPL570 |
|
SK-N-AS DAC treated
|
SK-N-AS neuroblastoma cell line
|
treatment: DACtreated
mycn: not amplified
|
hyb522.CEL
|
| Sample_geo_accession | GSM774192
| | Sample_status | Public on Sep 13 2012
| | Sample_submission_date | Aug 05 2011
| | Sample_last_update_date | Sep 13 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Treatment with DAC (2'-deoxy-5'-cytydine): 3 micromolars for 3 days
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was extracted using Qiagen RNEasy kit
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotin labelling was performed according to manufacturer's protocol
| | Sample_hyb_protocol | Hybridisation was performed according to the manufacturer's protocol
| | Sample_scan_protocol | Scanning was performed according to the manufacturer's protocol
| | Sample_data_processing | Data was processed in R/Bioconductor by affy, simpleaffy packages. Quality was controlled (5'-3' degradation plots; boxplots; image scan inspection). Data was normalized using just.gcrma (GC-RMA) and P/M/A calls were determined by using MAS 5.0
| | Sample_platform_id | GPL570
| | Sample_contact_name | Maté,,Ongenaert
| | Sample_contact_email | mate.ongenaert@ugent.be
| | Sample_contact_laboratory | Lab. Cytometry
| | Sample_contact_department | Center for Medical Genetics
| | Sample_contact_institute | Ghent University
| | Sample_contact_address | De Pintelaan 185 - MRB
| | Sample_contact_city | Ghent
| | Sample_contact_zip/postal_code | 9000
| | Sample_contact_country | Belgium
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM774nnn/GSM774192/suppl/GSM774192.CEL.gz
| | Sample_series_id | GSE31229
| | Sample_series_id | GSE31355
| | Sample_data_row_count | 54675
| | |
|
GSM774193 | GPL570 |
|
SJNB-1 untreated
|
SJNB-1 neuroblastoma cell line
|
treatment: untreated
mycn: not amplified
|
hyb523.CEL
|
| Sample_geo_accession | GSM774193
| | Sample_status | Public on Sep 13 2012
| | Sample_submission_date | Aug 05 2011
| | Sample_last_update_date | Sep 13 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Treatment with DAC (2'-deoxy-5'-cytydine): 3 micromolars for 3 days
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was extracted using Qiagen RNEasy kit
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotin labelling was performed according to manufacturer's protocol
| | Sample_hyb_protocol | Hybridisation was performed according to the manufacturer's protocol
| | Sample_scan_protocol | Scanning was performed according to the manufacturer's protocol
| | Sample_data_processing | Data was processed in R/Bioconductor by affy, simpleaffy packages. Quality was controlled (5'-3' degradation plots; boxplots; image scan inspection). Data was normalized using just.gcrma (GC-RMA) and P/M/A calls were determined by using MAS 5.0
| | Sample_platform_id | GPL570
| | Sample_contact_name | Maté,,Ongenaert
| | Sample_contact_email | mate.ongenaert@ugent.be
| | Sample_contact_laboratory | Lab. Cytometry
| | Sample_contact_department | Center for Medical Genetics
| | Sample_contact_institute | Ghent University
| | Sample_contact_address | De Pintelaan 185 - MRB
| | Sample_contact_city | Ghent
| | Sample_contact_zip/postal_code | 9000
| | Sample_contact_country | Belgium
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM774nnn/GSM774193/suppl/GSM774193.CEL.gz
| | Sample_series_id | GSE31229
| | Sample_series_id | GSE31355
| | Sample_data_row_count | 54675
| | |
|
GSM774194 | GPL570 |
|
SJNB-1 DAC treated
|
SJNB-1 neuroblastoma cell line
|
treatment: DACtreated
mycn: not amplified
|
hyb524.CEL
|
| Sample_geo_accession | GSM774194
| | Sample_status | Public on Sep 13 2012
| | Sample_submission_date | Aug 05 2011
| | Sample_last_update_date | Sep 13 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Treatment with DAC (2'-deoxy-5'-cytydine): 3 micromolars for 3 days
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was extracted using Qiagen RNEasy kit
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotin labelling was performed according to manufacturer's protocol
| | Sample_hyb_protocol | Hybridisation was performed according to the manufacturer's protocol
| | Sample_scan_protocol | Scanning was performed according to the manufacturer's protocol
| | Sample_data_processing | Data was processed in R/Bioconductor by affy, simpleaffy packages. Quality was controlled (5'-3' degradation plots; boxplots; image scan inspection). Data was normalized using just.gcrma (GC-RMA) and P/M/A calls were determined by using MAS 5.0
| | Sample_platform_id | GPL570
| | Sample_contact_name | Maté,,Ongenaert
| | Sample_contact_email | mate.ongenaert@ugent.be
| | Sample_contact_laboratory | Lab. Cytometry
| | Sample_contact_department | Center for Medical Genetics
| | Sample_contact_institute | Ghent University
| | Sample_contact_address | De Pintelaan 185 - MRB
| | Sample_contact_city | Ghent
| | Sample_contact_zip/postal_code | 9000
| | Sample_contact_country | Belgium
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM774nnn/GSM774194/suppl/GSM774194.CEL.gz
| | Sample_series_id | GSE31229
| | Sample_series_id | GSE31355
| | Sample_data_row_count | 54675
| | |
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