Search results for the GEO ID: GSE31245  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM774516 | GPL8300 |
|
Ovarian cancer sample 1
|
Ovarian cancer
|
overall survival (months): 36
overall survival (censored 1=event)): 1
|
|
| Sample_geo_accession | GSM774516
| | Sample_status | Public on Aug 12 2011
| | Sample_submission_date | Aug 07 2011
| | Sample_last_update_date | Aug 12 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was isolated using the trizol protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | RNA is converted into cDNA using a T7 promoter-tailed oligo-dT primer in the synthesis of the first cDNA strand; second strand cDNA synthesis is then carried out.
| | Sample_hyb_protocol | The double-stranded cDNA is used as the template in an in vitro transcription (IVT) reaction catalyzed by T7 polymerase and containing biotinylated CTP and UTP in addition to the four unmodified ribonucleoside triphosphates
| | Sample_scan_protocol | Each cRNA bound at its complementary oligonucleotide is excited using a confocal laser scanner, and the positions and intensities of the fluorescent emissions are captured.
| | Sample_data_processing | Full details provided in published manuscript http://jco.ascopubs.org/content/23/31/7911.long
| | Sample_data_processing | normalization algorithm: dChip
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Dimitrios,,Spentzos
| | Sample_contact_email | dspentzo@bidmc.harvard.edu
| | Sample_contact_institute | Beth Israel Deaconess Medical Center
| | Sample_contact_address | 330 Brookline Avenue
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02215
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM774nnn/GSM774516/suppl/GSM774516_082002_HGU95Av2_DS_7A3.CEL.gz
| | Sample_series_id | GSE31245
| | Sample_data_row_count | 12558
| | |
|
GSM774517 | GPL8300 |
|
Ovarian cancer sample 2
|
Ovarian cancer
|
overall survival (months): 35
overall survival (censored 1=event)): 0
|
|
| Sample_geo_accession | GSM774517
| | Sample_status | Public on Aug 12 2011
| | Sample_submission_date | Aug 07 2011
| | Sample_last_update_date | Aug 12 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was isolated using the trizol protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | RNA is converted into cDNA using a T7 promoter-tailed oligo-dT primer in the synthesis of the first cDNA strand; second strand cDNA synthesis is then carried out.
| | Sample_hyb_protocol | The double-stranded cDNA is used as the template in an in vitro transcription (IVT) reaction catalyzed by T7 polymerase and containing biotinylated CTP and UTP in addition to the four unmodified ribonucleoside triphosphates
| | Sample_scan_protocol | Each cRNA bound at its complementary oligonucleotide is excited using a confocal laser scanner, and the positions and intensities of the fluorescent emissions are captured.
| | Sample_data_processing | Full details provided in published manuscript http://jco.ascopubs.org/content/23/31/7911.long
| | Sample_data_processing | normalization algorithm: dChip
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Dimitrios,,Spentzos
| | Sample_contact_email | dspentzo@bidmc.harvard.edu
| | Sample_contact_institute | Beth Israel Deaconess Medical Center
| | Sample_contact_address | 330 Brookline Avenue
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02215
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM774nnn/GSM774517/suppl/GSM774517_082002_HGU95Av2_DS_7A4.CEL.gz
| | Sample_series_id | GSE31245
| | Sample_data_row_count | 12558
| | |
|
GSM774518 | GPL8300 |
|
Ovarian cancer sample 3
|
Ovarian cancer
|
overall survival (months): 41
overall survival (censored 1=event)): 0
|
|
| Sample_geo_accession | GSM774518
| | Sample_status | Public on Aug 12 2011
| | Sample_submission_date | Aug 07 2011
| | Sample_last_update_date | Aug 12 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was isolated using the trizol protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | RNA is converted into cDNA using a T7 promoter-tailed oligo-dT primer in the synthesis of the first cDNA strand; second strand cDNA synthesis is then carried out.
| | Sample_hyb_protocol | The double-stranded cDNA is used as the template in an in vitro transcription (IVT) reaction catalyzed by T7 polymerase and containing biotinylated CTP and UTP in addition to the four unmodified ribonucleoside triphosphates
| | Sample_scan_protocol | Each cRNA bound at its complementary oligonucleotide is excited using a confocal laser scanner, and the positions and intensities of the fluorescent emissions are captured.
| | Sample_data_processing | Full details provided in published manuscript http://jco.ascopubs.org/content/23/31/7911.long
| | Sample_data_processing | normalization algorithm: dChip
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Dimitrios,,Spentzos
| | Sample_contact_email | dspentzo@bidmc.harvard.edu
| | Sample_contact_institute | Beth Israel Deaconess Medical Center
| | Sample_contact_address | 330 Brookline Avenue
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02215
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM774nnn/GSM774518/suppl/GSM774518_082002_HGU95Av2_DS_7A5.CEL.gz
| | Sample_series_id | GSE31245
| | Sample_data_row_count | 12558
| | |
|
GSM774519 | GPL8300 |
|
Ovarian cancer sample 4
|
Ovarian cancer
|
overall survival (months): 66
overall survival (censored 1=event)): 0
|
|
| Sample_geo_accession | GSM774519
| | Sample_status | Public on Aug 12 2011
| | Sample_submission_date | Aug 07 2011
| | Sample_last_update_date | Aug 12 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was isolated using the trizol protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | RNA is converted into cDNA using a T7 promoter-tailed oligo-dT primer in the synthesis of the first cDNA strand; second strand cDNA synthesis is then carried out.
| | Sample_hyb_protocol | The double-stranded cDNA is used as the template in an in vitro transcription (IVT) reaction catalyzed by T7 polymerase and containing biotinylated CTP and UTP in addition to the four unmodified ribonucleoside triphosphates
| | Sample_scan_protocol | Each cRNA bound at its complementary oligonucleotide is excited using a confocal laser scanner, and the positions and intensities of the fluorescent emissions are captured.
| | Sample_data_processing | Full details provided in published manuscript http://jco.ascopubs.org/content/23/31/7911.long
| | Sample_data_processing | normalization algorithm: dChip
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Dimitrios,,Spentzos
| | Sample_contact_email | dspentzo@bidmc.harvard.edu
| | Sample_contact_institute | Beth Israel Deaconess Medical Center
| | Sample_contact_address | 330 Brookline Avenue
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02215
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM774nnn/GSM774519/suppl/GSM774519_082002_HGU95AV2_DS_7A9.CEL.gz
| | Sample_series_id | GSE31245
| | Sample_data_row_count | 12558
| | |
|
GSM774520 | GPL8300 |
|
Ovarian cancer sample 5
|
Ovarian cancer
|
overall survival (months): 41
overall survival (censored 1=event)): 1
|
|
| Sample_geo_accession | GSM774520
| | Sample_status | Public on Aug 12 2011
| | Sample_submission_date | Aug 07 2011
| | Sample_last_update_date | Aug 12 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was isolated using the trizol protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | RNA is converted into cDNA using a T7 promoter-tailed oligo-dT primer in the synthesis of the first cDNA strand; second strand cDNA synthesis is then carried out.
| | Sample_hyb_protocol | The double-stranded cDNA is used as the template in an in vitro transcription (IVT) reaction catalyzed by T7 polymerase and containing biotinylated CTP and UTP in addition to the four unmodified ribonucleoside triphosphates
| | Sample_scan_protocol | Each cRNA bound at its complementary oligonucleotide is excited using a confocal laser scanner, and the positions and intensities of the fluorescent emissions are captured.
| | Sample_data_processing | Full details provided in published manuscript http://jco.ascopubs.org/content/23/31/7911.long
| | Sample_data_processing | normalization algorithm: dChip
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Dimitrios,,Spentzos
| | Sample_contact_email | dspentzo@bidmc.harvard.edu
| | Sample_contact_institute | Beth Israel Deaconess Medical Center
| | Sample_contact_address | 330 Brookline Avenue
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02215
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM774nnn/GSM774520/suppl/GSM774520_082002_HGU95Av2_DS_7B1.CEL.gz
| | Sample_series_id | GSE31245
| | Sample_data_row_count | 12558
| | |
|
GSM774521 | GPL8300 |
|
Ovarian cancer sample 6
|
Ovarian cancer
|
overall survival (months): 48
overall survival (censored 1=event)): 1
|
|
| Sample_geo_accession | GSM774521
| | Sample_status | Public on Aug 12 2011
| | Sample_submission_date | Aug 07 2011
| | Sample_last_update_date | Aug 12 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was isolated using the trizol protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | RNA is converted into cDNA using a T7 promoter-tailed oligo-dT primer in the synthesis of the first cDNA strand; second strand cDNA synthesis is then carried out.
| | Sample_hyb_protocol | The double-stranded cDNA is used as the template in an in vitro transcription (IVT) reaction catalyzed by T7 polymerase and containing biotinylated CTP and UTP in addition to the four unmodified ribonucleoside triphosphates
| | Sample_scan_protocol | Each cRNA bound at its complementary oligonucleotide is excited using a confocal laser scanner, and the positions and intensities of the fluorescent emissions are captured.
| | Sample_data_processing | Full details provided in published manuscript http://jco.ascopubs.org/content/23/31/7911.long
| | Sample_data_processing | normalization algorithm: dChip
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Dimitrios,,Spentzos
| | Sample_contact_email | dspentzo@bidmc.harvard.edu
| | Sample_contact_institute | Beth Israel Deaconess Medical Center
| | Sample_contact_address | 330 Brookline Avenue
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02215
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM774nnn/GSM774521/suppl/GSM774521_082002_HGU95Av2_DS_7B2.CEL.gz
| | Sample_series_id | GSE31245
| | Sample_data_row_count | 12558
| | |
|
GSM774522 | GPL8300 |
|
Ovarian cancer sample 7
|
Ovarian cancer
|
overall survival (months): 12
overall survival (censored 1=event)): 1
|
|
| Sample_geo_accession | GSM774522
| | Sample_status | Public on Aug 12 2011
| | Sample_submission_date | Aug 07 2011
| | Sample_last_update_date | Aug 12 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was isolated using the trizol protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | RNA is converted into cDNA using a T7 promoter-tailed oligo-dT primer in the synthesis of the first cDNA strand; second strand cDNA synthesis is then carried out.
| | Sample_hyb_protocol | The double-stranded cDNA is used as the template in an in vitro transcription (IVT) reaction catalyzed by T7 polymerase and containing biotinylated CTP and UTP in addition to the four unmodified ribonucleoside triphosphates
| | Sample_scan_protocol | Each cRNA bound at its complementary oligonucleotide is excited using a confocal laser scanner, and the positions and intensities of the fluorescent emissions are captured.
| | Sample_data_processing | Full details provided in published manuscript http://jco.ascopubs.org/content/23/31/7911.long
| | Sample_data_processing | normalization algorithm: dChip
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Dimitrios,,Spentzos
| | Sample_contact_email | dspentzo@bidmc.harvard.edu
| | Sample_contact_institute | Beth Israel Deaconess Medical Center
| | Sample_contact_address | 330 Brookline Avenue
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02215
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM774nnn/GSM774522/suppl/GSM774522_082002_HGU95Av2_DS_7B3.CEL.gz
| | Sample_series_id | GSE31245
| | Sample_data_row_count | 12558
| | |
|
GSM774523 | GPL8300 |
|
Ovarian cancer sample 8
|
Ovarian cancer
|
overall survival (months): 59
overall survival (censored 1=event)): 0
|
|
| Sample_geo_accession | GSM774523
| | Sample_status | Public on Aug 12 2011
| | Sample_submission_date | Aug 07 2011
| | Sample_last_update_date | Aug 12 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was isolated using the trizol protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | RNA is converted into cDNA using a T7 promoter-tailed oligo-dT primer in the synthesis of the first cDNA strand; second strand cDNA synthesis is then carried out.
| | Sample_hyb_protocol | The double-stranded cDNA is used as the template in an in vitro transcription (IVT) reaction catalyzed by T7 polymerase and containing biotinylated CTP and UTP in addition to the four unmodified ribonucleoside triphosphates
| | Sample_scan_protocol | Each cRNA bound at its complementary oligonucleotide is excited using a confocal laser scanner, and the positions and intensities of the fluorescent emissions are captured.
| | Sample_data_processing | Full details provided in published manuscript http://jco.ascopubs.org/content/23/31/7911.long
| | Sample_data_processing | normalization algorithm: dChip
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Dimitrios,,Spentzos
| | Sample_contact_email | dspentzo@bidmc.harvard.edu
| | Sample_contact_institute | Beth Israel Deaconess Medical Center
| | Sample_contact_address | 330 Brookline Avenue
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02215
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM774nnn/GSM774523/suppl/GSM774523_082002_HGU95Av2_DS_7B4.CEL.gz
| | Sample_series_id | GSE31245
| | Sample_data_row_count | 12558
| | |
|
GSM774524 | GPL8300 |
|
Ovarian cancer sample 9
|
Ovarian cancer
|
overall survival (months): 41
overall survival (censored 1=event)): 1
|
|
| Sample_geo_accession | GSM774524
| | Sample_status | Public on Aug 12 2011
| | Sample_submission_date | Aug 07 2011
| | Sample_last_update_date | Aug 12 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was isolated using the trizol protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | RNA is converted into cDNA using a T7 promoter-tailed oligo-dT primer in the synthesis of the first cDNA strand; second strand cDNA synthesis is then carried out.
| | Sample_hyb_protocol | The double-stranded cDNA is used as the template in an in vitro transcription (IVT) reaction catalyzed by T7 polymerase and containing biotinylated CTP and UTP in addition to the four unmodified ribonucleoside triphosphates
| | Sample_scan_protocol | Each cRNA bound at its complementary oligonucleotide is excited using a confocal laser scanner, and the positions and intensities of the fluorescent emissions are captured.
| | Sample_data_processing | Full details provided in published manuscript http://jco.ascopubs.org/content/23/31/7911.long
| | Sample_data_processing | normalization algorithm: dChip
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Dimitrios,,Spentzos
| | Sample_contact_email | dspentzo@bidmc.harvard.edu
| | Sample_contact_institute | Beth Israel Deaconess Medical Center
| | Sample_contact_address | 330 Brookline Avenue
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02215
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM774nnn/GSM774524/suppl/GSM774524_082002_HGU95Av2_DS_7B5.CEL.gz
| | Sample_series_id | GSE31245
| | Sample_data_row_count | 12558
| | |
|
GSM774525 | GPL8300 |
|
Ovarian cancer sample 10
|
Ovarian cancer
|
overall survival (months): 73
overall survival (censored 1=event)): 0
|
|
| Sample_geo_accession | GSM774525
| | Sample_status | Public on Aug 12 2011
| | Sample_submission_date | Aug 07 2011
| | Sample_last_update_date | Aug 12 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was isolated using the trizol protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | RNA is converted into cDNA using a T7 promoter-tailed oligo-dT primer in the synthesis of the first cDNA strand; second strand cDNA synthesis is then carried out.
| | Sample_hyb_protocol | The double-stranded cDNA is used as the template in an in vitro transcription (IVT) reaction catalyzed by T7 polymerase and containing biotinylated CTP and UTP in addition to the four unmodified ribonucleoside triphosphates
| | Sample_scan_protocol | Each cRNA bound at its complementary oligonucleotide is excited using a confocal laser scanner, and the positions and intensities of the fluorescent emissions are captured.
| | Sample_data_processing | Full details provided in published manuscript http://jco.ascopubs.org/content/23/31/7911.long
| | Sample_data_processing | normalization algorithm: dChip
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Dimitrios,,Spentzos
| | Sample_contact_email | dspentzo@bidmc.harvard.edu
| | Sample_contact_institute | Beth Israel Deaconess Medical Center
| | Sample_contact_address | 330 Brookline Avenue
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02215
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM774nnn/GSM774525/suppl/GSM774525_082002_HGU95Av2_DS_7B6.CEL.gz
| | Sample_series_id | GSE31245
| | Sample_data_row_count | 12558
| | |
|
GSM774526 | GPL8300 |
|
Ovarian cancer sample 11
|
Ovarian cancer
|
overall survival (months): 63
overall survival (censored 1=event)): 1
|
|
| Sample_geo_accession | GSM774526
| | Sample_status | Public on Aug 12 2011
| | Sample_submission_date | Aug 07 2011
| | Sample_last_update_date | Aug 12 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was isolated using the trizol protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | RNA is converted into cDNA using a T7 promoter-tailed oligo-dT primer in the synthesis of the first cDNA strand; second strand cDNA synthesis is then carried out.
| | Sample_hyb_protocol | The double-stranded cDNA is used as the template in an in vitro transcription (IVT) reaction catalyzed by T7 polymerase and containing biotinylated CTP and UTP in addition to the four unmodified ribonucleoside triphosphates
| | Sample_scan_protocol | Each cRNA bound at its complementary oligonucleotide is excited using a confocal laser scanner, and the positions and intensities of the fluorescent emissions are captured.
| | Sample_data_processing | Full details provided in published manuscript http://jco.ascopubs.org/content/23/31/7911.long
| | Sample_data_processing | normalization algorithm: dChip
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Dimitrios,,Spentzos
| | Sample_contact_email | dspentzo@bidmc.harvard.edu
| | Sample_contact_institute | Beth Israel Deaconess Medical Center
| | Sample_contact_address | 330 Brookline Avenue
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02215
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM774nnn/GSM774526/suppl/GSM774526_082002_HGU95Av2_DS_7B7.CEL.gz
| | Sample_series_id | GSE31245
| | Sample_data_row_count | 12558
| | |
|
GSM774527 | GPL8300 |
|
Ovarian cancer sample 12
|
Ovarian cancer
|
overall survival (months): 19
overall survival (censored 1=event)): 1
|
|
| Sample_geo_accession | GSM774527
| | Sample_status | Public on Aug 12 2011
| | Sample_submission_date | Aug 07 2011
| | Sample_last_update_date | Aug 12 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was isolated using the trizol protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | RNA is converted into cDNA using a T7 promoter-tailed oligo-dT primer in the synthesis of the first cDNA strand; second strand cDNA synthesis is then carried out.
| | Sample_hyb_protocol | The double-stranded cDNA is used as the template in an in vitro transcription (IVT) reaction catalyzed by T7 polymerase and containing biotinylated CTP and UTP in addition to the four unmodified ribonucleoside triphosphates
| | Sample_scan_protocol | Each cRNA bound at its complementary oligonucleotide is excited using a confocal laser scanner, and the positions and intensities of the fluorescent emissions are captured.
| | Sample_data_processing | Full details provided in published manuscript http://jco.ascopubs.org/content/23/31/7911.long
| | Sample_data_processing | normalization algorithm: dChip
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Dimitrios,,Spentzos
| | Sample_contact_email | dspentzo@bidmc.harvard.edu
| | Sample_contact_institute | Beth Israel Deaconess Medical Center
| | Sample_contact_address | 330 Brookline Avenue
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02215
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM774nnn/GSM774527/suppl/GSM774527_082002_HGU95Av2_DS_7B8.CEL.gz
| | Sample_series_id | GSE31245
| | Sample_data_row_count | 12558
| | |
|
GSM774528 | GPL8300 |
|
Ovarian cancer sample 13
|
Ovarian cancer
|
overall survival (months): 26
overall survival (censored 1=event)): 0
|
|
| Sample_geo_accession | GSM774528
| | Sample_status | Public on Aug 12 2011
| | Sample_submission_date | Aug 07 2011
| | Sample_last_update_date | Aug 12 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was isolated using the trizol protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | RNA is converted into cDNA using a T7 promoter-tailed oligo-dT primer in the synthesis of the first cDNA strand; second strand cDNA synthesis is then carried out.
| | Sample_hyb_protocol | The double-stranded cDNA is used as the template in an in vitro transcription (IVT) reaction catalyzed by T7 polymerase and containing biotinylated CTP and UTP in addition to the four unmodified ribonucleoside triphosphates
| | Sample_scan_protocol | Each cRNA bound at its complementary oligonucleotide is excited using a confocal laser scanner, and the positions and intensities of the fluorescent emissions are captured.
| | Sample_data_processing | Full details provided in published manuscript http://jco.ascopubs.org/content/23/31/7911.long
| | Sample_data_processing | normalization algorithm: dChip
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Dimitrios,,Spentzos
| | Sample_contact_email | dspentzo@bidmc.harvard.edu
| | Sample_contact_institute | Beth Israel Deaconess Medical Center
| | Sample_contact_address | 330 Brookline Avenue
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02215
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM774nnn/GSM774528/suppl/GSM774528_082002_HGU95Av2_DS_7C1.CEL.gz
| | Sample_series_id | GSE31245
| | Sample_data_row_count | 12558
| | |
|
GSM774529 | GPL8300 |
|
Ovarian cancer sample 14
|
Ovarian cancer
|
overall survival (months): 23
overall survival (censored 1=event)): 0
|
|
| Sample_geo_accession | GSM774529
| | Sample_status | Public on Aug 12 2011
| | Sample_submission_date | Aug 07 2011
| | Sample_last_update_date | Aug 12 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was isolated using the trizol protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | RNA is converted into cDNA using a T7 promoter-tailed oligo-dT primer in the synthesis of the first cDNA strand; second strand cDNA synthesis is then carried out.
| | Sample_hyb_protocol | The double-stranded cDNA is used as the template in an in vitro transcription (IVT) reaction catalyzed by T7 polymerase and containing biotinylated CTP and UTP in addition to the four unmodified ribonucleoside triphosphates
| | Sample_scan_protocol | Each cRNA bound at its complementary oligonucleotide is excited using a confocal laser scanner, and the positions and intensities of the fluorescent emissions are captured.
| | Sample_data_processing | Full details provided in published manuscript http://jco.ascopubs.org/content/23/31/7911.long
| | Sample_data_processing | normalization algorithm: dChip
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Dimitrios,,Spentzos
| | Sample_contact_email | dspentzo@bidmc.harvard.edu
| | Sample_contact_institute | Beth Israel Deaconess Medical Center
| | Sample_contact_address | 330 Brookline Avenue
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02215
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM774nnn/GSM774529/suppl/GSM774529_082002_HGU95Av2_DS_7C2.CEL.gz
| | Sample_series_id | GSE31245
| | Sample_data_row_count | 12558
| | |
|
GSM774530 | GPL8300 |
|
Ovarian cancer sample 15
|
Ovarian cancer
|
overall survival (months): 22
overall survival (censored 1=event)): 0
|
|
| Sample_geo_accession | GSM774530
| | Sample_status | Public on Aug 12 2011
| | Sample_submission_date | Aug 07 2011
| | Sample_last_update_date | Aug 12 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was isolated using the trizol protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | RNA is converted into cDNA using a T7 promoter-tailed oligo-dT primer in the synthesis of the first cDNA strand; second strand cDNA synthesis is then carried out.
| | Sample_hyb_protocol | The double-stranded cDNA is used as the template in an in vitro transcription (IVT) reaction catalyzed by T7 polymerase and containing biotinylated CTP and UTP in addition to the four unmodified ribonucleoside triphosphates
| | Sample_scan_protocol | Each cRNA bound at its complementary oligonucleotide is excited using a confocal laser scanner, and the positions and intensities of the fluorescent emissions are captured.
| | Sample_data_processing | Full details provided in published manuscript http://jco.ascopubs.org/content/23/31/7911.long
| | Sample_data_processing | normalization algorithm: dChip
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Dimitrios,,Spentzos
| | Sample_contact_email | dspentzo@bidmc.harvard.edu
| | Sample_contact_institute | Beth Israel Deaconess Medical Center
| | Sample_contact_address | 330 Brookline Avenue
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02215
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM774nnn/GSM774530/suppl/GSM774530_082002_HGU95Av2_DS_7C4.CEL.gz
| | Sample_series_id | GSE31245
| | Sample_data_row_count | 12558
| | |
|
GSM774531 | GPL8300 |
|
Ovarian cancer sample 16
|
Ovarian cancer
|
overall survival (months): 52
overall survival (censored 1=event)): 0
|
|
| Sample_geo_accession | GSM774531
| | Sample_status | Public on Aug 12 2011
| | Sample_submission_date | Aug 07 2011
| | Sample_last_update_date | Aug 12 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was isolated using the trizol protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | RNA is converted into cDNA using a T7 promoter-tailed oligo-dT primer in the synthesis of the first cDNA strand; second strand cDNA synthesis is then carried out.
| | Sample_hyb_protocol | The double-stranded cDNA is used as the template in an in vitro transcription (IVT) reaction catalyzed by T7 polymerase and containing biotinylated CTP and UTP in addition to the four unmodified ribonucleoside triphosphates
| | Sample_scan_protocol | Each cRNA bound at its complementary oligonucleotide is excited using a confocal laser scanner, and the positions and intensities of the fluorescent emissions are captured.
| | Sample_data_processing | Full details provided in published manuscript http://jco.ascopubs.org/content/23/31/7911.long
| | Sample_data_processing | normalization algorithm: dChip
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Dimitrios,,Spentzos
| | Sample_contact_email | dspentzo@bidmc.harvard.edu
| | Sample_contact_institute | Beth Israel Deaconess Medical Center
| | Sample_contact_address | 330 Brookline Avenue
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02215
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM774nnn/GSM774531/suppl/GSM774531_091301_HGU95Av2_SC_G7.CEL.gz
| | Sample_series_id | GSE31245
| | Sample_data_row_count | 12558
| | |
|
GSM774532 | GPL8300 |
|
Ovarian cancer sample 17
|
Ovarian cancer
|
overall survival (months): 30
overall survival (censored 1=event)): 1
|
|
| Sample_geo_accession | GSM774532
| | Sample_status | Public on Aug 12 2011
| | Sample_submission_date | Aug 07 2011
| | Sample_last_update_date | Aug 12 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was isolated using the trizol protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | RNA is converted into cDNA using a T7 promoter-tailed oligo-dT primer in the synthesis of the first cDNA strand; second strand cDNA synthesis is then carried out.
| | Sample_hyb_protocol | The double-stranded cDNA is used as the template in an in vitro transcription (IVT) reaction catalyzed by T7 polymerase and containing biotinylated CTP and UTP in addition to the four unmodified ribonucleoside triphosphates
| | Sample_scan_protocol | Each cRNA bound at its complementary oligonucleotide is excited using a confocal laser scanner, and the positions and intensities of the fluorescent emissions are captured.
| | Sample_data_processing | Full details provided in published manuscript http://jco.ascopubs.org/content/23/31/7911.long
| | Sample_data_processing | normalization algorithm: dChip
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Dimitrios,,Spentzos
| | Sample_contact_email | dspentzo@bidmc.harvard.edu
| | Sample_contact_institute | Beth Israel Deaconess Medical Center
| | Sample_contact_address | 330 Brookline Avenue
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02215
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM774nnn/GSM774532/suppl/GSM774532_091301_HGU95Av2_SC_G8.CEL.gz
| | Sample_series_id | GSE31245
| | Sample_data_row_count | 12558
| | |
|
GSM774533 | GPL8300 |
|
Ovarian cancer sample 18
|
Ovarian cancer
|
overall survival (months): 50
overall survival (censored 1=event)): 1
|
|
| Sample_geo_accession | GSM774533
| | Sample_status | Public on Aug 12 2011
| | Sample_submission_date | Aug 07 2011
| | Sample_last_update_date | Aug 12 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was isolated using the trizol protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | RNA is converted into cDNA using a T7 promoter-tailed oligo-dT primer in the synthesis of the first cDNA strand; second strand cDNA synthesis is then carried out.
| | Sample_hyb_protocol | The double-stranded cDNA is used as the template in an in vitro transcription (IVT) reaction catalyzed by T7 polymerase and containing biotinylated CTP and UTP in addition to the four unmodified ribonucleoside triphosphates
| | Sample_scan_protocol | Each cRNA bound at its complementary oligonucleotide is excited using a confocal laser scanner, and the positions and intensities of the fluorescent emissions are captured.
| | Sample_data_processing | Full details provided in published manuscript http://jco.ascopubs.org/content/23/31/7911.long
| | Sample_data_processing | normalization algorithm: dChip
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Dimitrios,,Spentzos
| | Sample_contact_email | dspentzo@bidmc.harvard.edu
| | Sample_contact_institute | Beth Israel Deaconess Medical Center
| | Sample_contact_address | 330 Brookline Avenue
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02215
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM774nnn/GSM774533/suppl/GSM774533_091301_HGU95Av2_SC_G9.CEL.gz
| | Sample_series_id | GSE31245
| | Sample_data_row_count | 12558
| | |
|
GSM774534 | GPL8300 |
|
Ovarian cancer sample 19
|
Ovarian cancer
|
overall survival (months): 68
overall survival (censored 1=event)): 0
|
|
| Sample_geo_accession | GSM774534
| | Sample_status | Public on Aug 12 2011
| | Sample_submission_date | Aug 07 2011
| | Sample_last_update_date | Aug 12 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was isolated using the trizol protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | RNA is converted into cDNA using a T7 promoter-tailed oligo-dT primer in the synthesis of the first cDNA strand; second strand cDNA synthesis is then carried out.
| | Sample_hyb_protocol | The double-stranded cDNA is used as the template in an in vitro transcription (IVT) reaction catalyzed by T7 polymerase and containing biotinylated CTP and UTP in addition to the four unmodified ribonucleoside triphosphates
| | Sample_scan_protocol | Each cRNA bound at its complementary oligonucleotide is excited using a confocal laser scanner, and the positions and intensities of the fluorescent emissions are captured.
| | Sample_data_processing | Full details provided in published manuscript http://jco.ascopubs.org/content/23/31/7911.long
| | Sample_data_processing | normalization algorithm: dChip
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Dimitrios,,Spentzos
| | Sample_contact_email | dspentzo@bidmc.harvard.edu
| | Sample_contact_institute | Beth Israel Deaconess Medical Center
| | Sample_contact_address | 330 Brookline Avenue
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02215
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM774nnn/GSM774534/suppl/GSM774534_091301_HGU95Av2_SC_H1.CEL.gz
| | Sample_series_id | GSE31245
| | Sample_data_row_count | 12558
| | |
|
GSM774535 | GPL8300 |
|
Ovarian cancer sample 20
|
Ovarian cancer
|
overall survival (months): 46
overall survival (censored 1=event)): 1
|
|
| Sample_geo_accession | GSM774535
| | Sample_status | Public on Aug 12 2011
| | Sample_submission_date | Aug 07 2011
| | Sample_last_update_date | Aug 12 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was isolated using the trizol protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | RNA is converted into cDNA using a T7 promoter-tailed oligo-dT primer in the synthesis of the first cDNA strand; second strand cDNA synthesis is then carried out.
| | Sample_hyb_protocol | The double-stranded cDNA is used as the template in an in vitro transcription (IVT) reaction catalyzed by T7 polymerase and containing biotinylated CTP and UTP in addition to the four unmodified ribonucleoside triphosphates
| | Sample_scan_protocol | Each cRNA bound at its complementary oligonucleotide is excited using a confocal laser scanner, and the positions and intensities of the fluorescent emissions are captured.
| | Sample_data_processing | Full details provided in published manuscript http://jco.ascopubs.org/content/23/31/7911.long
| | Sample_data_processing | normalization algorithm: dChip
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Dimitrios,,Spentzos
| | Sample_contact_email | dspentzo@bidmc.harvard.edu
| | Sample_contact_institute | Beth Israel Deaconess Medical Center
| | Sample_contact_address | 330 Brookline Avenue
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02215
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM774nnn/GSM774535/suppl/GSM774535_091301_HGU95Av2_SC_H2.CEL.gz
| | Sample_series_id | GSE31245
| | Sample_data_row_count | 12558
| | |
|
GSM774536 | GPL8300 |
|
Ovarian cancer sample 21
|
Ovarian cancer
|
overall survival (months): 30
overall survival (censored 1=event)): 1
|
|
| Sample_geo_accession | GSM774536
| | Sample_status | Public on Aug 12 2011
| | Sample_submission_date | Aug 07 2011
| | Sample_last_update_date | Aug 12 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was isolated using the trizol protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | RNA is converted into cDNA using a T7 promoter-tailed oligo-dT primer in the synthesis of the first cDNA strand; second strand cDNA synthesis is then carried out.
| | Sample_hyb_protocol | The double-stranded cDNA is used as the template in an in vitro transcription (IVT) reaction catalyzed by T7 polymerase and containing biotinylated CTP and UTP in addition to the four unmodified ribonucleoside triphosphates
| | Sample_scan_protocol | Each cRNA bound at its complementary oligonucleotide is excited using a confocal laser scanner, and the positions and intensities of the fluorescent emissions are captured.
| | Sample_data_processing | Full details provided in published manuscript http://jco.ascopubs.org/content/23/31/7911.long
| | Sample_data_processing | normalization algorithm: dChip
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Dimitrios,,Spentzos
| | Sample_contact_email | dspentzo@bidmc.harvard.edu
| | Sample_contact_institute | Beth Israel Deaconess Medical Center
| | Sample_contact_address | 330 Brookline Avenue
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02215
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM774nnn/GSM774536/suppl/GSM774536_121401_HGU95Av2_SC_R5.CEL.gz
| | Sample_series_id | GSE31245
| | Sample_data_row_count | 12558
| | |
|
GSM774537 | GPL8300 |
|
Ovarian cancer sample 22
|
Ovarian cancer
|
overall survival (months): 34
overall survival (censored 1=event)): 1
|
|
| Sample_geo_accession | GSM774537
| | Sample_status | Public on Aug 12 2011
| | Sample_submission_date | Aug 07 2011
| | Sample_last_update_date | Aug 12 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was isolated using the trizol protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | RNA is converted into cDNA using a T7 promoter-tailed oligo-dT primer in the synthesis of the first cDNA strand; second strand cDNA synthesis is then carried out.
| | Sample_hyb_protocol | The double-stranded cDNA is used as the template in an in vitro transcription (IVT) reaction catalyzed by T7 polymerase and containing biotinylated CTP and UTP in addition to the four unmodified ribonucleoside triphosphates
| | Sample_scan_protocol | Each cRNA bound at its complementary oligonucleotide is excited using a confocal laser scanner, and the positions and intensities of the fluorescent emissions are captured.
| | Sample_data_processing | Full details provided in published manuscript http://jco.ascopubs.org/content/23/31/7911.long
| | Sample_data_processing | normalization algorithm: dChip
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Dimitrios,,Spentzos
| | Sample_contact_email | dspentzo@bidmc.harvard.edu
| | Sample_contact_institute | Beth Israel Deaconess Medical Center
| | Sample_contact_address | 330 Brookline Avenue
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02215
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM774nnn/GSM774537/suppl/GSM774537_121401_HGU95Av2_SC_R6.CEL.gz
| | Sample_series_id | GSE31245
| | Sample_data_row_count | 12558
| | |
|
GSM774538 | GPL8300 |
|
Ovarian cancer sample 23
|
Ovarian cancer
|
overall survival (months): 24
overall survival (censored 1=event)): 1
|
|
| Sample_geo_accession | GSM774538
| | Sample_status | Public on Aug 12 2011
| | Sample_submission_date | Aug 07 2011
| | Sample_last_update_date | Aug 12 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was isolated using the trizol protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | RNA is converted into cDNA using a T7 promoter-tailed oligo-dT primer in the synthesis of the first cDNA strand; second strand cDNA synthesis is then carried out.
| | Sample_hyb_protocol | The double-stranded cDNA is used as the template in an in vitro transcription (IVT) reaction catalyzed by T7 polymerase and containing biotinylated CTP and UTP in addition to the four unmodified ribonucleoside triphosphates
| | Sample_scan_protocol | Each cRNA bound at its complementary oligonucleotide is excited using a confocal laser scanner, and the positions and intensities of the fluorescent emissions are captured.
| | Sample_data_processing | Full details provided in published manuscript http://jco.ascopubs.org/content/23/31/7911.long
| | Sample_data_processing | normalization algorithm: dChip
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Dimitrios,,Spentzos
| | Sample_contact_email | dspentzo@bidmc.harvard.edu
| | Sample_contact_institute | Beth Israel Deaconess Medical Center
| | Sample_contact_address | 330 Brookline Avenue
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02215
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM774nnn/GSM774538/suppl/GSM774538_121401_HGU95Av2_SC_R7.CEL.gz
| | Sample_series_id | GSE31245
| | Sample_data_row_count | 12558
| | |
|
GSM774539 | GPL8300 |
|
Ovarian cancer sample 24
|
Ovarian cancer
|
overall survival (months): 39
overall survival (censored 1=event)): 0
|
|
| Sample_geo_accession | GSM774539
| | Sample_status | Public on Aug 12 2011
| | Sample_submission_date | Aug 07 2011
| | Sample_last_update_date | Aug 12 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was isolated using the trizol protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | RNA is converted into cDNA using a T7 promoter-tailed oligo-dT primer in the synthesis of the first cDNA strand; second strand cDNA synthesis is then carried out.
| | Sample_hyb_protocol | The double-stranded cDNA is used as the template in an in vitro transcription (IVT) reaction catalyzed by T7 polymerase and containing biotinylated CTP and UTP in addition to the four unmodified ribonucleoside triphosphates
| | Sample_scan_protocol | Each cRNA bound at its complementary oligonucleotide is excited using a confocal laser scanner, and the positions and intensities of the fluorescent emissions are captured.
| | Sample_data_processing | Full details provided in published manuscript http://jco.ascopubs.org/content/23/31/7911.long
| | Sample_data_processing | normalization algorithm: dChip
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Dimitrios,,Spentzos
| | Sample_contact_email | dspentzo@bidmc.harvard.edu
| | Sample_contact_institute | Beth Israel Deaconess Medical Center
| | Sample_contact_address | 330 Brookline Avenue
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02215
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM774nnn/GSM774539/suppl/GSM774539_121401_HGU95Av2_SC_R8.CEL.gz
| | Sample_series_id | GSE31245
| | Sample_data_row_count | 12558
| | |
|
GSM774540 | GPL8300 |
|
Ovarian cancer sample 25
|
Ovarian cancer
|
overall survival (months): 33
overall survival (censored 1=event)): 0
|
|
| Sample_geo_accession | GSM774540
| | Sample_status | Public on Aug 12 2011
| | Sample_submission_date | Aug 07 2011
| | Sample_last_update_date | Aug 12 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was isolated using the trizol protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | RNA is converted into cDNA using a T7 promoter-tailed oligo-dT primer in the synthesis of the first cDNA strand; second strand cDNA synthesis is then carried out.
| | Sample_hyb_protocol | The double-stranded cDNA is used as the template in an in vitro transcription (IVT) reaction catalyzed by T7 polymerase and containing biotinylated CTP and UTP in addition to the four unmodified ribonucleoside triphosphates
| | Sample_scan_protocol | Each cRNA bound at its complementary oligonucleotide is excited using a confocal laser scanner, and the positions and intensities of the fluorescent emissions are captured.
| | Sample_data_processing | Full details provided in published manuscript http://jco.ascopubs.org/content/23/31/7911.long
| | Sample_data_processing | normalization algorithm: dChip
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Dimitrios,,Spentzos
| | Sample_contact_email | dspentzo@bidmc.harvard.edu
| | Sample_contact_institute | Beth Israel Deaconess Medical Center
| | Sample_contact_address | 330 Brookline Avenue
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02215
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM774nnn/GSM774540/suppl/GSM774540_121401_HGU95Av2_SC_R9.CEL.gz
| | Sample_series_id | GSE31245
| | Sample_data_row_count | 12558
| | |
|
GSM774541 | GPL8300 |
|
Ovarian cancer sample 26
|
Ovarian cancer
|
overall survival (months): 57
overall survival (censored 1=event)): 0
|
|
| Sample_geo_accession | GSM774541
| | Sample_status | Public on Aug 12 2011
| | Sample_submission_date | Aug 07 2011
| | Sample_last_update_date | Aug 12 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was isolated using the trizol protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | RNA is converted into cDNA using a T7 promoter-tailed oligo-dT primer in the synthesis of the first cDNA strand; second strand cDNA synthesis is then carried out.
| | Sample_hyb_protocol | The double-stranded cDNA is used as the template in an in vitro transcription (IVT) reaction catalyzed by T7 polymerase and containing biotinylated CTP and UTP in addition to the four unmodified ribonucleoside triphosphates
| | Sample_scan_protocol | Each cRNA bound at its complementary oligonucleotide is excited using a confocal laser scanner, and the positions and intensities of the fluorescent emissions are captured.
| | Sample_data_processing | Full details provided in published manuscript http://jco.ascopubs.org/content/23/31/7911.long
| | Sample_data_processing | normalization algorithm: dChip
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Dimitrios,,Spentzos
| | Sample_contact_email | dspentzo@bidmc.harvard.edu
| | Sample_contact_institute | Beth Israel Deaconess Medical Center
| | Sample_contact_address | 330 Brookline Avenue
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02215
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM774nnn/GSM774541/suppl/GSM774541_121401_HGU95Av2_SC_S5.CEL.gz
| | Sample_series_id | GSE31245
| | Sample_data_row_count | 12558
| | |
|
GSM774542 | GPL8300 |
|
Ovarian cancer sample 27
|
Ovarian cancer
|
overall survival (months): 57
overall survival (censored 1=event)): 0
|
|
| Sample_geo_accession | GSM774542
| | Sample_status | Public on Aug 12 2011
| | Sample_submission_date | Aug 07 2011
| | Sample_last_update_date | Aug 12 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was isolated using the trizol protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | RNA is converted into cDNA using a T7 promoter-tailed oligo-dT primer in the synthesis of the first cDNA strand; second strand cDNA synthesis is then carried out.
| | Sample_hyb_protocol | The double-stranded cDNA is used as the template in an in vitro transcription (IVT) reaction catalyzed by T7 polymerase and containing biotinylated CTP and UTP in addition to the four unmodified ribonucleoside triphosphates
| | Sample_scan_protocol | Each cRNA bound at its complementary oligonucleotide is excited using a confocal laser scanner, and the positions and intensities of the fluorescent emissions are captured.
| | Sample_data_processing | Full details provided in published manuscript http://jco.ascopubs.org/content/23/31/7911.long
| | Sample_data_processing | normalization algorithm: dChip
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Dimitrios,,Spentzos
| | Sample_contact_email | dspentzo@bidmc.harvard.edu
| | Sample_contact_institute | Beth Israel Deaconess Medical Center
| | Sample_contact_address | 330 Brookline Avenue
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02215
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM774nnn/GSM774542/suppl/GSM774542_121401_HGU95Av2_SC_S6.CEL.gz
| | Sample_series_id | GSE31245
| | Sample_data_row_count | 12558
| | |
|
GSM774543 | GPL8300 |
|
Ovarian cancer sample 28
|
Ovarian cancer
|
overall survival (months): 69
overall survival (censored 1=event)): 0
|
|
| Sample_geo_accession | GSM774543
| | Sample_status | Public on Aug 12 2011
| | Sample_submission_date | Aug 07 2011
| | Sample_last_update_date | Aug 12 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was isolated using the trizol protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | RNA is converted into cDNA using a T7 promoter-tailed oligo-dT primer in the synthesis of the first cDNA strand; second strand cDNA synthesis is then carried out.
| | Sample_hyb_protocol | The double-stranded cDNA is used as the template in an in vitro transcription (IVT) reaction catalyzed by T7 polymerase and containing biotinylated CTP and UTP in addition to the four unmodified ribonucleoside triphosphates
| | Sample_scan_protocol | Each cRNA bound at its complementary oligonucleotide is excited using a confocal laser scanner, and the positions and intensities of the fluorescent emissions are captured.
| | Sample_data_processing | Full details provided in published manuscript http://jco.ascopubs.org/content/23/31/7911.long
| | Sample_data_processing | normalization algorithm: dChip
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Dimitrios,,Spentzos
| | Sample_contact_email | dspentzo@bidmc.harvard.edu
| | Sample_contact_institute | Beth Israel Deaconess Medical Center
| | Sample_contact_address | 330 Brookline Avenue
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02215
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM774nnn/GSM774543/suppl/GSM774543_121401_HGU95Av2_SC_S7.CEL.gz
| | Sample_series_id | GSE31245
| | Sample_data_row_count | 12558
| | |
|
GSM774544 | GPL8300 |
|
Ovarian cancer sample 29
|
Ovarian cancer
|
overall survival (months): 25
overall survival (censored 1=event)): 1
|
|
| Sample_geo_accession | GSM774544
| | Sample_status | Public on Aug 12 2011
| | Sample_submission_date | Aug 07 2011
| | Sample_last_update_date | Aug 12 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was isolated using the trizol protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | RNA is converted into cDNA using a T7 promoter-tailed oligo-dT primer in the synthesis of the first cDNA strand; second strand cDNA synthesis is then carried out.
| | Sample_hyb_protocol | The double-stranded cDNA is used as the template in an in vitro transcription (IVT) reaction catalyzed by T7 polymerase and containing biotinylated CTP and UTP in addition to the four unmodified ribonucleoside triphosphates
| | Sample_scan_protocol | Each cRNA bound at its complementary oligonucleotide is excited using a confocal laser scanner, and the positions and intensities of the fluorescent emissions are captured.
| | Sample_data_processing | Full details provided in published manuscript http://jco.ascopubs.org/content/23/31/7911.long
| | Sample_data_processing | normalization algorithm: dChip
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Dimitrios,,Spentzos
| | Sample_contact_email | dspentzo@bidmc.harvard.edu
| | Sample_contact_institute | Beth Israel Deaconess Medical Center
| | Sample_contact_address | 330 Brookline Avenue
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02215
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM774nnn/GSM774544/suppl/GSM774544_121401_HGU95Av2_SC_S8.CEL.gz
| | Sample_series_id | GSE31245
| | Sample_data_row_count | 12558
| | |
|
GSM774545 | GPL8300 |
|
Ovarian cancer sample 30
|
Ovarian cancer
|
overall survival (months): 74
overall survival (censored 1=event)): 0
|
|
| Sample_geo_accession | GSM774545
| | Sample_status | Public on Aug 12 2011
| | Sample_submission_date | Aug 07 2011
| | Sample_last_update_date | Aug 12 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was isolated using the trizol protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | RNA is converted into cDNA using a T7 promoter-tailed oligo-dT primer in the synthesis of the first cDNA strand; second strand cDNA synthesis is then carried out.
| | Sample_hyb_protocol | The double-stranded cDNA is used as the template in an in vitro transcription (IVT) reaction catalyzed by T7 polymerase and containing biotinylated CTP and UTP in addition to the four unmodified ribonucleoside triphosphates
| | Sample_scan_protocol | Each cRNA bound at its complementary oligonucleotide is excited using a confocal laser scanner, and the positions and intensities of the fluorescent emissions are captured.
| | Sample_data_processing | Full details provided in published manuscript http://jco.ascopubs.org/content/23/31/7911.long
| | Sample_data_processing | normalization algorithm: dChip
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Dimitrios,,Spentzos
| | Sample_contact_email | dspentzo@bidmc.harvard.edu
| | Sample_contact_institute | Beth Israel Deaconess Medical Center
| | Sample_contact_address | 330 Brookline Avenue
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02215
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM774nnn/GSM774545/suppl/GSM774545_121401_HGU95Av2_SC_S9.CEL.gz
| | Sample_series_id | GSE31245
| | Sample_data_row_count | 12558
| | |
|
GSM774546 | GPL8300 |
|
Ovarian cancer sample 31
|
Ovarian cancer
|
overall survival (months): 42
overall survival (censored 1=event)): 1
|
|
| Sample_geo_accession | GSM774546
| | Sample_status | Public on Aug 12 2011
| | Sample_submission_date | Aug 07 2011
| | Sample_last_update_date | Aug 12 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was isolated using the trizol protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | RNA is converted into cDNA using a T7 promoter-tailed oligo-dT primer in the synthesis of the first cDNA strand; second strand cDNA synthesis is then carried out.
| | Sample_hyb_protocol | The double-stranded cDNA is used as the template in an in vitro transcription (IVT) reaction catalyzed by T7 polymerase and containing biotinylated CTP and UTP in addition to the four unmodified ribonucleoside triphosphates
| | Sample_scan_protocol | Each cRNA bound at its complementary oligonucleotide is excited using a confocal laser scanner, and the positions and intensities of the fluorescent emissions are captured.
| | Sample_data_processing | Full details provided in published manuscript http://jco.ascopubs.org/content/23/31/7911.long
| | Sample_data_processing | normalization algorithm: dChip
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Dimitrios,,Spentzos
| | Sample_contact_email | dspentzo@bidmc.harvard.edu
| | Sample_contact_institute | Beth Israel Deaconess Medical Center
| | Sample_contact_address | 330 Brookline Avenue
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02215
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM774nnn/GSM774546/suppl/GSM774546_090903_HGU95AV2_TL_14B2.CEL.gz
| | Sample_series_id | GSE31245
| | Sample_data_row_count | 12558
| | |
|
GSM774547 | GPL8300 |
|
Ovarian cancer sample 32
|
Ovarian cancer
|
overall survival (months): 58
overall survival (censored 1=event)): 0
|
|
| Sample_geo_accession | GSM774547
| | Sample_status | Public on Aug 12 2011
| | Sample_submission_date | Aug 07 2011
| | Sample_last_update_date | Aug 12 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was isolated using the trizol protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | RNA is converted into cDNA using a T7 promoter-tailed oligo-dT primer in the synthesis of the first cDNA strand; second strand cDNA synthesis is then carried out.
| | Sample_hyb_protocol | The double-stranded cDNA is used as the template in an in vitro transcription (IVT) reaction catalyzed by T7 polymerase and containing biotinylated CTP and UTP in addition to the four unmodified ribonucleoside triphosphates
| | Sample_scan_protocol | Each cRNA bound at its complementary oligonucleotide is excited using a confocal laser scanner, and the positions and intensities of the fluorescent emissions are captured.
| | Sample_data_processing | Full details provided in published manuscript http://jco.ascopubs.org/content/23/31/7911.long
| | Sample_data_processing | normalization algorithm: dChip
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Dimitrios,,Spentzos
| | Sample_contact_email | dspentzo@bidmc.harvard.edu
| | Sample_contact_institute | Beth Israel Deaconess Medical Center
| | Sample_contact_address | 330 Brookline Avenue
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02215
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM774nnn/GSM774547/suppl/GSM774547_090903_HGU95AV2_TL_14B3.CEL.gz
| | Sample_series_id | GSE31245
| | Sample_data_row_count | 12558
| | |
|
GSM774548 | GPL8300 |
|
Ovarian cancer sample 33
|
Ovarian cancer
|
overall survival (months): 31
overall survival (censored 1=event)): 0
|
|
| Sample_geo_accession | GSM774548
| | Sample_status | Public on Aug 12 2011
| | Sample_submission_date | Aug 07 2011
| | Sample_last_update_date | Aug 12 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was isolated using the trizol protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | RNA is converted into cDNA using a T7 promoter-tailed oligo-dT primer in the synthesis of the first cDNA strand; second strand cDNA synthesis is then carried out.
| | Sample_hyb_protocol | The double-stranded cDNA is used as the template in an in vitro transcription (IVT) reaction catalyzed by T7 polymerase and containing biotinylated CTP and UTP in addition to the four unmodified ribonucleoside triphosphates
| | Sample_scan_protocol | Each cRNA bound at its complementary oligonucleotide is excited using a confocal laser scanner, and the positions and intensities of the fluorescent emissions are captured.
| | Sample_data_processing | Full details provided in published manuscript http://jco.ascopubs.org/content/23/31/7911.long
| | Sample_data_processing | normalization algorithm: dChip
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Dimitrios,,Spentzos
| | Sample_contact_email | dspentzo@bidmc.harvard.edu
| | Sample_contact_institute | Beth Israel Deaconess Medical Center
| | Sample_contact_address | 330 Brookline Avenue
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02215
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM774nnn/GSM774548/suppl/GSM774548_090903_HGU95AV2_TL_14B4.CEL.gz
| | Sample_series_id | GSE31245
| | Sample_data_row_count | 12558
| | |
|
GSM774549 | GPL8300 |
|
Ovarian cancer sample 34
|
Ovarian cancer
|
overall survival (months): 59
overall survival (censored 1=event)): 0
|
|
| Sample_geo_accession | GSM774549
| | Sample_status | Public on Aug 12 2011
| | Sample_submission_date | Aug 07 2011
| | Sample_last_update_date | Aug 12 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was isolated using the trizol protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | RNA is converted into cDNA using a T7 promoter-tailed oligo-dT primer in the synthesis of the first cDNA strand; second strand cDNA synthesis is then carried out.
| | Sample_hyb_protocol | The double-stranded cDNA is used as the template in an in vitro transcription (IVT) reaction catalyzed by T7 polymerase and containing biotinylated CTP and UTP in addition to the four unmodified ribonucleoside triphosphates
| | Sample_scan_protocol | Each cRNA bound at its complementary oligonucleotide is excited using a confocal laser scanner, and the positions and intensities of the fluorescent emissions are captured.
| | Sample_data_processing | Full details provided in published manuscript http://jco.ascopubs.org/content/23/31/7911.long
| | Sample_data_processing | normalization algorithm: dChip
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Dimitrios,,Spentzos
| | Sample_contact_email | dspentzo@bidmc.harvard.edu
| | Sample_contact_institute | Beth Israel Deaconess Medical Center
| | Sample_contact_address | 330 Brookline Avenue
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02215
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM774nnn/GSM774549/suppl/GSM774549_090903_HGU95AV2_TL_14B5.CEL.gz
| | Sample_series_id | GSE31245
| | Sample_data_row_count | 12558
| | |
|
GSM774550 | GPL8300 |
|
Ovarian cancer sample 35
|
Ovarian cancer
|
overall survival (months): 33
overall survival (censored 1=event)): 1
|
|
| Sample_geo_accession | GSM774550
| | Sample_status | Public on Aug 12 2011
| | Sample_submission_date | Aug 07 2011
| | Sample_last_update_date | Aug 12 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was isolated using the trizol protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | RNA is converted into cDNA using a T7 promoter-tailed oligo-dT primer in the synthesis of the first cDNA strand; second strand cDNA synthesis is then carried out.
| | Sample_hyb_protocol | The double-stranded cDNA is used as the template in an in vitro transcription (IVT) reaction catalyzed by T7 polymerase and containing biotinylated CTP and UTP in addition to the four unmodified ribonucleoside triphosphates
| | Sample_scan_protocol | Each cRNA bound at its complementary oligonucleotide is excited using a confocal laser scanner, and the positions and intensities of the fluorescent emissions are captured.
| | Sample_data_processing | Full details provided in published manuscript http://jco.ascopubs.org/content/23/31/7911.long
| | Sample_data_processing | normalization algorithm: dChip
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Dimitrios,,Spentzos
| | Sample_contact_email | dspentzo@bidmc.harvard.edu
| | Sample_contact_institute | Beth Israel Deaconess Medical Center
| | Sample_contact_address | 330 Brookline Avenue
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02215
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM774nnn/GSM774550/suppl/GSM774550_090903_HGU95AV2_TL_14B6.CEL.gz
| | Sample_series_id | GSE31245
| | Sample_data_row_count | 12558
| | |
|
GSM774551 | GPL8300 |
|
Ovarian cancer sample 36
|
Ovarian cancer
|
overall survival (months): 50
overall survival (censored 1=event)): 0
|
|
| Sample_geo_accession | GSM774551
| | Sample_status | Public on Aug 12 2011
| | Sample_submission_date | Aug 07 2011
| | Sample_last_update_date | Aug 12 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was isolated using the trizol protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | RNA is converted into cDNA using a T7 promoter-tailed oligo-dT primer in the synthesis of the first cDNA strand; second strand cDNA synthesis is then carried out.
| | Sample_hyb_protocol | The double-stranded cDNA is used as the template in an in vitro transcription (IVT) reaction catalyzed by T7 polymerase and containing biotinylated CTP and UTP in addition to the four unmodified ribonucleoside triphosphates
| | Sample_scan_protocol | Each cRNA bound at its complementary oligonucleotide is excited using a confocal laser scanner, and the positions and intensities of the fluorescent emissions are captured.
| | Sample_data_processing | Full details provided in published manuscript http://jco.ascopubs.org/content/23/31/7911.long
| | Sample_data_processing | normalization algorithm: dChip
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Dimitrios,,Spentzos
| | Sample_contact_email | dspentzo@bidmc.harvard.edu
| | Sample_contact_institute | Beth Israel Deaconess Medical Center
| | Sample_contact_address | 330 Brookline Avenue
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02215
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM774nnn/GSM774551/suppl/GSM774551_090903_HGU95AV2_TL_14B7.CEL.gz
| | Sample_series_id | GSE31245
| | Sample_data_row_count | 12558
| | |
|
GSM774552 | GPL8300 |
|
Ovarian cancer sample 37
|
Ovarian cancer
|
overall survival (months): 49
overall survival (censored 1=event)): 1
|
|
| Sample_geo_accession | GSM774552
| | Sample_status | Public on Aug 12 2011
| | Sample_submission_date | Aug 07 2011
| | Sample_last_update_date | Aug 12 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was isolated using the trizol protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | RNA is converted into cDNA using a T7 promoter-tailed oligo-dT primer in the synthesis of the first cDNA strand; second strand cDNA synthesis is then carried out.
| | Sample_hyb_protocol | The double-stranded cDNA is used as the template in an in vitro transcription (IVT) reaction catalyzed by T7 polymerase and containing biotinylated CTP and UTP in addition to the four unmodified ribonucleoside triphosphates
| | Sample_scan_protocol | Each cRNA bound at its complementary oligonucleotide is excited using a confocal laser scanner, and the positions and intensities of the fluorescent emissions are captured.
| | Sample_data_processing | Full details provided in published manuscript http://jco.ascopubs.org/content/23/31/7911.long
| | Sample_data_processing | normalization algorithm: dChip
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Dimitrios,,Spentzos
| | Sample_contact_email | dspentzo@bidmc.harvard.edu
| | Sample_contact_institute | Beth Israel Deaconess Medical Center
| | Sample_contact_address | 330 Brookline Avenue
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02215
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM774nnn/GSM774552/suppl/GSM774552_090903_HGU95AV2_TL_14B8.CEL.gz
| | Sample_series_id | GSE31245
| | Sample_data_row_count | 12558
| | |
|
GSM774553 | GPL8300 |
|
Ovarian cancer sample 38
|
Ovarian cancer
|
overall survival (months): 23
overall survival (censored 1=event)): 0
|
|
| Sample_geo_accession | GSM774553
| | Sample_status | Public on Aug 12 2011
| | Sample_submission_date | Aug 07 2011
| | Sample_last_update_date | Aug 12 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was isolated using the trizol protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | RNA is converted into cDNA using a T7 promoter-tailed oligo-dT primer in the synthesis of the first cDNA strand; second strand cDNA synthesis is then carried out.
| | Sample_hyb_protocol | The double-stranded cDNA is used as the template in an in vitro transcription (IVT) reaction catalyzed by T7 polymerase and containing biotinylated CTP and UTP in addition to the four unmodified ribonucleoside triphosphates
| | Sample_scan_protocol | Each cRNA bound at its complementary oligonucleotide is excited using a confocal laser scanner, and the positions and intensities of the fluorescent emissions are captured.
| | Sample_data_processing | Full details provided in published manuscript http://jco.ascopubs.org/content/23/31/7911.long
| | Sample_data_processing | normalization algorithm: dChip
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Dimitrios,,Spentzos
| | Sample_contact_email | dspentzo@bidmc.harvard.edu
| | Sample_contact_institute | Beth Israel Deaconess Medical Center
| | Sample_contact_address | 330 Brookline Avenue
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02215
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM774nnn/GSM774553/suppl/GSM774553_090903_HGU95AV2_TL_14B9.CEL.gz
| | Sample_series_id | GSE31245
| | Sample_data_row_count | 12558
| | |
|
GSM774554 | GPL8300 |
|
Ovarian cancer sample 39
|
Ovarian cancer
|
overall survival (months): 18
overall survival (censored 1=event)): 1
|
|
| Sample_geo_accession | GSM774554
| | Sample_status | Public on Aug 12 2011
| | Sample_submission_date | Aug 07 2011
| | Sample_last_update_date | Aug 12 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was isolated using the trizol protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | RNA is converted into cDNA using a T7 promoter-tailed oligo-dT primer in the synthesis of the first cDNA strand; second strand cDNA synthesis is then carried out.
| | Sample_hyb_protocol | The double-stranded cDNA is used as the template in an in vitro transcription (IVT) reaction catalyzed by T7 polymerase and containing biotinylated CTP and UTP in addition to the four unmodified ribonucleoside triphosphates
| | Sample_scan_protocol | Each cRNA bound at its complementary oligonucleotide is excited using a confocal laser scanner, and the positions and intensities of the fluorescent emissions are captured.
| | Sample_data_processing | Full details provided in published manuscript http://jco.ascopubs.org/content/23/31/7911.long
| | Sample_data_processing | normalization algorithm: dChip
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Dimitrios,,Spentzos
| | Sample_contact_email | dspentzo@bidmc.harvard.edu
| | Sample_contact_institute | Beth Israel Deaconess Medical Center
| | Sample_contact_address | 330 Brookline Avenue
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02215
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM774nnn/GSM774554/suppl/GSM774554_090903_HGU95AV2_TL_14C1.CEL.gz
| | Sample_series_id | GSE31245
| | Sample_data_row_count | 12558
| | |
|
GSM774555 | GPL8300 |
|
Ovarian cancer sample 40
|
Ovarian cancer
|
overall survival (months): 65
overall survival (censored 1=event)): 0
|
|
| Sample_geo_accession | GSM774555
| | Sample_status | Public on Aug 12 2011
| | Sample_submission_date | Aug 07 2011
| | Sample_last_update_date | Aug 12 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was isolated using the trizol protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | RNA is converted into cDNA using a T7 promoter-tailed oligo-dT primer in the synthesis of the first cDNA strand; second strand cDNA synthesis is then carried out.
| | Sample_hyb_protocol | The double-stranded cDNA is used as the template in an in vitro transcription (IVT) reaction catalyzed by T7 polymerase and containing biotinylated CTP and UTP in addition to the four unmodified ribonucleoside triphosphates
| | Sample_scan_protocol | Each cRNA bound at its complementary oligonucleotide is excited using a confocal laser scanner, and the positions and intensities of the fluorescent emissions are captured.
| | Sample_data_processing | Full details provided in published manuscript http://jco.ascopubs.org/content/23/31/7911.long
| | Sample_data_processing | normalization algorithm: dChip
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Dimitrios,,Spentzos
| | Sample_contact_email | dspentzo@bidmc.harvard.edu
| | Sample_contact_institute | Beth Israel Deaconess Medical Center
| | Sample_contact_address | 330 Brookline Avenue
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02215
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM774nnn/GSM774555/suppl/GSM774555_090903_HGU95AV2_TL_14C2.CEL.gz
| | Sample_series_id | GSE31245
| | Sample_data_row_count | 12558
| | |
|
GSM774556 | GPL8300 |
|
Ovarian cancer sample 41
|
Ovarian cancer
|
overall survival (months): 46
overall survival (censored 1=event)): 1
|
|
| Sample_geo_accession | GSM774556
| | Sample_status | Public on Aug 12 2011
| | Sample_submission_date | Aug 07 2011
| | Sample_last_update_date | Aug 12 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was isolated using the trizol protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | RNA is converted into cDNA using a T7 promoter-tailed oligo-dT primer in the synthesis of the first cDNA strand; second strand cDNA synthesis is then carried out.
| | Sample_hyb_protocol | The double-stranded cDNA is used as the template in an in vitro transcription (IVT) reaction catalyzed by T7 polymerase and containing biotinylated CTP and UTP in addition to the four unmodified ribonucleoside triphosphates
| | Sample_scan_protocol | Each cRNA bound at its complementary oligonucleotide is excited using a confocal laser scanner, and the positions and intensities of the fluorescent emissions are captured.
| | Sample_data_processing | Full details provided in published manuscript http://jco.ascopubs.org/content/23/31/7911.long
| | Sample_data_processing | normalization algorithm: dChip
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Dimitrios,,Spentzos
| | Sample_contact_email | dspentzo@bidmc.harvard.edu
| | Sample_contact_institute | Beth Israel Deaconess Medical Center
| | Sample_contact_address | 330 Brookline Avenue
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02215
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM774nnn/GSM774556/suppl/GSM774556_090903_HGU95AV2_TL_14C3.CEL.gz
| | Sample_series_id | GSE31245
| | Sample_data_row_count | 12558
| | |
|
GSM774557 | GPL8300 |
|
Ovarian cancer sample 42
|
Ovarian cancer
|
overall survival (months): 61
overall survival (censored 1=event)): 0
|
|
| Sample_geo_accession | GSM774557
| | Sample_status | Public on Aug 12 2011
| | Sample_submission_date | Aug 07 2011
| | Sample_last_update_date | Aug 12 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was isolated using the trizol protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | RNA is converted into cDNA using a T7 promoter-tailed oligo-dT primer in the synthesis of the first cDNA strand; second strand cDNA synthesis is then carried out.
| | Sample_hyb_protocol | The double-stranded cDNA is used as the template in an in vitro transcription (IVT) reaction catalyzed by T7 polymerase and containing biotinylated CTP and UTP in addition to the four unmodified ribonucleoside triphosphates
| | Sample_scan_protocol | Each cRNA bound at its complementary oligonucleotide is excited using a confocal laser scanner, and the positions and intensities of the fluorescent emissions are captured.
| | Sample_data_processing | Full details provided in published manuscript http://jco.ascopubs.org/content/23/31/7911.long
| | Sample_data_processing | normalization algorithm: dChip
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Dimitrios,,Spentzos
| | Sample_contact_email | dspentzo@bidmc.harvard.edu
| | Sample_contact_institute | Beth Israel Deaconess Medical Center
| | Sample_contact_address | 330 Brookline Avenue
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02215
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM774nnn/GSM774557/suppl/GSM774557_090903_HGU95AV2_TL_14C4.CEL.gz
| | Sample_series_id | GSE31245
| | Sample_data_row_count | 12558
| | |
|
GSM774558 | GPL8300 |
|
Ovarian cancer sample 43
|
Ovarian cancer
|
overall survival (months): 61
overall survival (censored 1=event)): 0
|
|
| Sample_geo_accession | GSM774558
| | Sample_status | Public on Aug 12 2011
| | Sample_submission_date | Aug 07 2011
| | Sample_last_update_date | Aug 12 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was isolated using the trizol protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | RNA is converted into cDNA using a T7 promoter-tailed oligo-dT primer in the synthesis of the first cDNA strand; second strand cDNA synthesis is then carried out.
| | Sample_hyb_protocol | The double-stranded cDNA is used as the template in an in vitro transcription (IVT) reaction catalyzed by T7 polymerase and containing biotinylated CTP and UTP in addition to the four unmodified ribonucleoside triphosphates
| | Sample_scan_protocol | Each cRNA bound at its complementary oligonucleotide is excited using a confocal laser scanner, and the positions and intensities of the fluorescent emissions are captured.
| | Sample_data_processing | Full details provided in published manuscript http://jco.ascopubs.org/content/23/31/7911.long
| | Sample_data_processing | normalization algorithm: dChip
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Dimitrios,,Spentzos
| | Sample_contact_email | dspentzo@bidmc.harvard.edu
| | Sample_contact_institute | Beth Israel Deaconess Medical Center
| | Sample_contact_address | 330 Brookline Avenue
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02215
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM774nnn/GSM774558/suppl/GSM774558_090903_HGU95AV2_TL_14C5.CEL.gz
| | Sample_series_id | GSE31245
| | Sample_data_row_count | 12558
| | |
|
GSM774559 | GPL8300 |
|
Ovarian cancer sample 44
|
Ovarian cancer
|
overall survival (months): 51
overall survival (censored 1=event)): 0
|
|
| Sample_geo_accession | GSM774559
| | Sample_status | Public on Aug 12 2011
| | Sample_submission_date | Aug 07 2011
| | Sample_last_update_date | Aug 12 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was isolated using the trizol protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | RNA is converted into cDNA using a T7 promoter-tailed oligo-dT primer in the synthesis of the first cDNA strand; second strand cDNA synthesis is then carried out.
| | Sample_hyb_protocol | The double-stranded cDNA is used as the template in an in vitro transcription (IVT) reaction catalyzed by T7 polymerase and containing biotinylated CTP and UTP in addition to the four unmodified ribonucleoside triphosphates
| | Sample_scan_protocol | Each cRNA bound at its complementary oligonucleotide is excited using a confocal laser scanner, and the positions and intensities of the fluorescent emissions are captured.
| | Sample_data_processing | Full details provided in published manuscript http://jco.ascopubs.org/content/23/31/7911.long
| | Sample_data_processing | normalization algorithm: dChip
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Dimitrios,,Spentzos
| | Sample_contact_email | dspentzo@bidmc.harvard.edu
| | Sample_contact_institute | Beth Israel Deaconess Medical Center
| | Sample_contact_address | 330 Brookline Avenue
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02215
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM774nnn/GSM774559/suppl/GSM774559_090903_HGU95AV2_TL_14C6.CEL.gz
| | Sample_series_id | GSE31245
| | Sample_data_row_count | 12558
| | |
|
GSM774560 | GPL8300 |
|
Ovarian cancer sample 45
|
Ovarian cancer
|
overall survival (months): 52
overall survival (censored 1=event)): 0
|
|
| Sample_geo_accession | GSM774560
| | Sample_status | Public on Aug 12 2011
| | Sample_submission_date | Aug 07 2011
| | Sample_last_update_date | Aug 12 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was isolated using the trizol protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | RNA is converted into cDNA using a T7 promoter-tailed oligo-dT primer in the synthesis of the first cDNA strand; second strand cDNA synthesis is then carried out.
| | Sample_hyb_protocol | The double-stranded cDNA is used as the template in an in vitro transcription (IVT) reaction catalyzed by T7 polymerase and containing biotinylated CTP and UTP in addition to the four unmodified ribonucleoside triphosphates
| | Sample_scan_protocol | Each cRNA bound at its complementary oligonucleotide is excited using a confocal laser scanner, and the positions and intensities of the fluorescent emissions are captured.
| | Sample_data_processing | Full details provided in published manuscript http://jco.ascopubs.org/content/23/31/7911.long
| | Sample_data_processing | normalization algorithm: dChip
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Dimitrios,,Spentzos
| | Sample_contact_email | dspentzo@bidmc.harvard.edu
| | Sample_contact_institute | Beth Israel Deaconess Medical Center
| | Sample_contact_address | 330 Brookline Avenue
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02215
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM774nnn/GSM774560/suppl/GSM774560_090903_HGU95AV2_TL_14C7.CEL.gz
| | Sample_series_id | GSE31245
| | Sample_data_row_count | 12558
| | |
|
GSM774561 | GPL8300 |
|
Ovarian cancer sample 46
|
Ovarian cancer
|
overall survival (months): 33
overall survival (censored 1=event)): 1
|
|
| Sample_geo_accession | GSM774561
| | Sample_status | Public on Aug 12 2011
| | Sample_submission_date | Aug 07 2011
| | Sample_last_update_date | Aug 12 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was isolated using the trizol protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | RNA is converted into cDNA using a T7 promoter-tailed oligo-dT primer in the synthesis of the first cDNA strand; second strand cDNA synthesis is then carried out.
| | Sample_hyb_protocol | The double-stranded cDNA is used as the template in an in vitro transcription (IVT) reaction catalyzed by T7 polymerase and containing biotinylated CTP and UTP in addition to the four unmodified ribonucleoside triphosphates
| | Sample_scan_protocol | Each cRNA bound at its complementary oligonucleotide is excited using a confocal laser scanner, and the positions and intensities of the fluorescent emissions are captured.
| | Sample_data_processing | Full details provided in published manuscript http://jco.ascopubs.org/content/23/31/7911.long
| | Sample_data_processing | normalization algorithm: dChip
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Dimitrios,,Spentzos
| | Sample_contact_email | dspentzo@bidmc.harvard.edu
| | Sample_contact_institute | Beth Israel Deaconess Medical Center
| | Sample_contact_address | 330 Brookline Avenue
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02215
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM774nnn/GSM774561/suppl/GSM774561_090903_HGU95AV2_TL_14C8.CEL.gz
| | Sample_series_id | GSE31245
| | Sample_data_row_count | 12558
| | |
|
GSM774562 | GPL8300 |
|
Ovarian cancer sample 47
|
Ovarian cancer
|
overall survival (months): 51
overall survival (censored 1=event)): 0
|
|
| Sample_geo_accession | GSM774562
| | Sample_status | Public on Aug 12 2011
| | Sample_submission_date | Aug 07 2011
| | Sample_last_update_date | Aug 12 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was isolated using the trizol protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | RNA is converted into cDNA using a T7 promoter-tailed oligo-dT primer in the synthesis of the first cDNA strand; second strand cDNA synthesis is then carried out.
| | Sample_hyb_protocol | The double-stranded cDNA is used as the template in an in vitro transcription (IVT) reaction catalyzed by T7 polymerase and containing biotinylated CTP and UTP in addition to the four unmodified ribonucleoside triphosphates
| | Sample_scan_protocol | Each cRNA bound at its complementary oligonucleotide is excited using a confocal laser scanner, and the positions and intensities of the fluorescent emissions are captured.
| | Sample_data_processing | Full details provided in published manuscript http://jco.ascopubs.org/content/23/31/7911.long
| | Sample_data_processing | normalization algorithm: dChip
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Dimitrios,,Spentzos
| | Sample_contact_email | dspentzo@bidmc.harvard.edu
| | Sample_contact_institute | Beth Israel Deaconess Medical Center
| | Sample_contact_address | 330 Brookline Avenue
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02215
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM774nnn/GSM774562/suppl/GSM774562_090903_HGU95AV2_TL_14C9.CEL.gz
| | Sample_series_id | GSE31245
| | Sample_data_row_count | 12558
| | |
|
GSM774563 | GPL8300 |
|
Ovarian cancer sample 48
|
Ovarian cancer
|
overall survival (months): 52
overall survival (censored 1=event)): 0
|
|
| Sample_geo_accession | GSM774563
| | Sample_status | Public on Aug 12 2011
| | Sample_submission_date | Aug 07 2011
| | Sample_last_update_date | Aug 12 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was isolated using the trizol protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | RNA is converted into cDNA using a T7 promoter-tailed oligo-dT primer in the synthesis of the first cDNA strand; second strand cDNA synthesis is then carried out.
| | Sample_hyb_protocol | The double-stranded cDNA is used as the template in an in vitro transcription (IVT) reaction catalyzed by T7 polymerase and containing biotinylated CTP and UTP in addition to the four unmodified ribonucleoside triphosphates
| | Sample_scan_protocol | Each cRNA bound at its complementary oligonucleotide is excited using a confocal laser scanner, and the positions and intensities of the fluorescent emissions are captured.
| | Sample_data_processing | Full details provided in published manuscript http://jco.ascopubs.org/content/23/31/7911.long
| | Sample_data_processing | normalization algorithm: dChip
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Dimitrios,,Spentzos
| | Sample_contact_email | dspentzo@bidmc.harvard.edu
| | Sample_contact_institute | Beth Israel Deaconess Medical Center
| | Sample_contact_address | 330 Brookline Avenue
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02215
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM774nnn/GSM774563/suppl/GSM774563_090903_HGU95AV2_TL_14D1.CEL.gz
| | Sample_series_id | GSE31245
| | Sample_data_row_count | 12558
| | |
|
GSM774564 | GPL8300 |
|
Ovarian cancer sample 49
|
Ovarian cancer
|
overall survival (months): 50
overall survival (censored 1=event)): 0
|
|
| Sample_geo_accession | GSM774564
| | Sample_status | Public on Aug 12 2011
| | Sample_submission_date | Aug 07 2011
| | Sample_last_update_date | Aug 12 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was isolated using the trizol protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | RNA is converted into cDNA using a T7 promoter-tailed oligo-dT primer in the synthesis of the first cDNA strand; second strand cDNA synthesis is then carried out.
| | Sample_hyb_protocol | The double-stranded cDNA is used as the template in an in vitro transcription (IVT) reaction catalyzed by T7 polymerase and containing biotinylated CTP and UTP in addition to the four unmodified ribonucleoside triphosphates
| | Sample_scan_protocol | Each cRNA bound at its complementary oligonucleotide is excited using a confocal laser scanner, and the positions and intensities of the fluorescent emissions are captured.
| | Sample_data_processing | Full details provided in published manuscript http://jco.ascopubs.org/content/23/31/7911.long
| | Sample_data_processing | normalization algorithm: dChip
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Dimitrios,,Spentzos
| | Sample_contact_email | dspentzo@bidmc.harvard.edu
| | Sample_contact_institute | Beth Israel Deaconess Medical Center
| | Sample_contact_address | 330 Brookline Avenue
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02215
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM774nnn/GSM774564/suppl/GSM774564_090903_HGU95AV2_TL_14D3.CEL.gz
| | Sample_series_id | GSE31245
| | Sample_data_row_count | 12558
| | |
|
GSM774565 | GPL8300 |
|
Ovarian cancer sample 50
|
Ovarian cancer
|
overall survival (months): 44
overall survival (censored 1=event)): 0
|
|
| Sample_geo_accession | GSM774565
| | Sample_status | Public on Aug 12 2011
| | Sample_submission_date | Aug 07 2011
| | Sample_last_update_date | Aug 12 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was isolated using the trizol protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | RNA is converted into cDNA using a T7 promoter-tailed oligo-dT primer in the synthesis of the first cDNA strand; second strand cDNA synthesis is then carried out.
| | Sample_hyb_protocol | The double-stranded cDNA is used as the template in an in vitro transcription (IVT) reaction catalyzed by T7 polymerase and containing biotinylated CTP and UTP in addition to the four unmodified ribonucleoside triphosphates
| | Sample_scan_protocol | Each cRNA bound at its complementary oligonucleotide is excited using a confocal laser scanner, and the positions and intensities of the fluorescent emissions are captured.
| | Sample_data_processing | Full details provided in published manuscript http://jco.ascopubs.org/content/23/31/7911.long
| | Sample_data_processing | normalization algorithm: dChip
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Dimitrios,,Spentzos
| | Sample_contact_email | dspentzo@bidmc.harvard.edu
| | Sample_contact_institute | Beth Israel Deaconess Medical Center
| | Sample_contact_address | 330 Brookline Avenue
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02215
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM774nnn/GSM774565/suppl/GSM774565_090903_HGU95AV2_TL_14D5.CEL.gz
| | Sample_series_id | GSE31245
| | Sample_data_row_count | 12558
| | |
|
GSM774566 | GPL8300 |
|
Ovarian cancer sample 51
|
Ovarian cancer
|
overall survival (months): 10
overall survival (censored 1=event)): 1
|
|
| Sample_geo_accession | GSM774566
| | Sample_status | Public on Aug 12 2011
| | Sample_submission_date | Aug 07 2011
| | Sample_last_update_date | Aug 12 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was isolated using the trizol protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | RNA is converted into cDNA using a T7 promoter-tailed oligo-dT primer in the synthesis of the first cDNA strand; second strand cDNA synthesis is then carried out.
| | Sample_hyb_protocol | The double-stranded cDNA is used as the template in an in vitro transcription (IVT) reaction catalyzed by T7 polymerase and containing biotinylated CTP and UTP in addition to the four unmodified ribonucleoside triphosphates
| | Sample_scan_protocol | Each cRNA bound at its complementary oligonucleotide is excited using a confocal laser scanner, and the positions and intensities of the fluorescent emissions are captured.
| | Sample_data_processing | Full details provided in published manuscript http://jco.ascopubs.org/content/23/31/7911.long
| | Sample_data_processing | normalization algorithm: dChip
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Dimitrios,,Spentzos
| | Sample_contact_email | dspentzo@bidmc.harvard.edu
| | Sample_contact_institute | Beth Israel Deaconess Medical Center
| | Sample_contact_address | 330 Brookline Avenue
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02215
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM774nnn/GSM774566/suppl/GSM774566_090903_HGU95AV2_TL_14D6.CEL.gz
| | Sample_series_id | GSE31245
| | Sample_data_row_count | 12558
| | |
|
GSM774567 | GPL8300 |
|
Ovarian cancer sample 52
|
Ovarian cancer
|
overall survival (months): 26
overall survival (censored 1=event)): 1
|
|
| Sample_geo_accession | GSM774567
| | Sample_status | Public on Aug 12 2011
| | Sample_submission_date | Aug 07 2011
| | Sample_last_update_date | Aug 12 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was isolated using the trizol protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | RNA is converted into cDNA using a T7 promoter-tailed oligo-dT primer in the synthesis of the first cDNA strand; second strand cDNA synthesis is then carried out.
| | Sample_hyb_protocol | The double-stranded cDNA is used as the template in an in vitro transcription (IVT) reaction catalyzed by T7 polymerase and containing biotinylated CTP and UTP in addition to the four unmodified ribonucleoside triphosphates
| | Sample_scan_protocol | Each cRNA bound at its complementary oligonucleotide is excited using a confocal laser scanner, and the positions and intensities of the fluorescent emissions are captured.
| | Sample_data_processing | Full details provided in published manuscript http://jco.ascopubs.org/content/23/31/7911.long
| | Sample_data_processing | normalization algorithm: dChip
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Dimitrios,,Spentzos
| | Sample_contact_email | dspentzo@bidmc.harvard.edu
| | Sample_contact_institute | Beth Israel Deaconess Medical Center
| | Sample_contact_address | 330 Brookline Avenue
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02215
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM774nnn/GSM774567/suppl/GSM774567_090903_HGU95AV2_TL_14D7.CEL.gz
| | Sample_series_id | GSE31245
| | Sample_data_row_count | 12558
| | |
|
GSM774568 | GPL8300 |
|
Ovarian cancer sample 53
|
Ovarian cancer
|
overall survival (months): 44
overall survival (censored 1=event)): 0
|
|
| Sample_geo_accession | GSM774568
| | Sample_status | Public on Aug 12 2011
| | Sample_submission_date | Aug 07 2011
| | Sample_last_update_date | Aug 12 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was isolated using the trizol protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | RNA is converted into cDNA using a T7 promoter-tailed oligo-dT primer in the synthesis of the first cDNA strand; second strand cDNA synthesis is then carried out.
| | Sample_hyb_protocol | The double-stranded cDNA is used as the template in an in vitro transcription (IVT) reaction catalyzed by T7 polymerase and containing biotinylated CTP and UTP in addition to the four unmodified ribonucleoside triphosphates
| | Sample_scan_protocol | Each cRNA bound at its complementary oligonucleotide is excited using a confocal laser scanner, and the positions and intensities of the fluorescent emissions are captured.
| | Sample_data_processing | Full details provided in published manuscript http://jco.ascopubs.org/content/23/31/7911.long
| | Sample_data_processing | normalization algorithm: dChip
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Dimitrios,,Spentzos
| | Sample_contact_email | dspentzo@bidmc.harvard.edu
| | Sample_contact_institute | Beth Israel Deaconess Medical Center
| | Sample_contact_address | 330 Brookline Avenue
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02215
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM774nnn/GSM774568/suppl/GSM774568_091803_HU95AV2_TL_15D4.CEL.gz
| | Sample_series_id | GSE31245
| | Sample_data_row_count | 12558
| | |
|
GSM774570 | GPL8300 |
|
Ovarian cancer sample 55
|
Ovarian cancer
|
overall survival (months): 12
overall survival (censored 1=event)): 1
|
|
| Sample_geo_accession | GSM774570
| | Sample_status | Public on Aug 12 2011
| | Sample_submission_date | Aug 07 2011
| | Sample_last_update_date | Aug 12 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was isolated using the trizol protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | RNA is converted into cDNA using a T7 promoter-tailed oligo-dT primer in the synthesis of the first cDNA strand; second strand cDNA synthesis is then carried out.
| | Sample_hyb_protocol | The double-stranded cDNA is used as the template in an in vitro transcription (IVT) reaction catalyzed by T7 polymerase and containing biotinylated CTP and UTP in addition to the four unmodified ribonucleoside triphosphates
| | Sample_scan_protocol | Each cRNA bound at its complementary oligonucleotide is excited using a confocal laser scanner, and the positions and intensities of the fluorescent emissions are captured.
| | Sample_data_processing | Full details provided in published manuscript http://jco.ascopubs.org/content/23/31/7911.long
| | Sample_data_processing | normalization algorithm: dChip
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Dimitrios,,Spentzos
| | Sample_contact_email | dspentzo@bidmc.harvard.edu
| | Sample_contact_institute | Beth Israel Deaconess Medical Center
| | Sample_contact_address | 330 Brookline Avenue
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02215
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM774nnn/GSM774570/suppl/GSM774570_091803_HU95AV2_TL_15D6.CEL.gz
| | Sample_series_id | GSE31245
| | Sample_data_row_count | 12558
| | |
|
GSM774571 | GPL8300 |
|
Ovarian cancer sample 56
|
Ovarian cancer
|
overall survival (months): 39
overall survival (censored 1=event)): 0
|
|
| Sample_geo_accession | GSM774571
| | Sample_status | Public on Aug 12 2011
| | Sample_submission_date | Aug 07 2011
| | Sample_last_update_date | Aug 12 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was isolated using the trizol protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | RNA is converted into cDNA using a T7 promoter-tailed oligo-dT primer in the synthesis of the first cDNA strand; second strand cDNA synthesis is then carried out.
| | Sample_hyb_protocol | The double-stranded cDNA is used as the template in an in vitro transcription (IVT) reaction catalyzed by T7 polymerase and containing biotinylated CTP and UTP in addition to the four unmodified ribonucleoside triphosphates
| | Sample_scan_protocol | Each cRNA bound at its complementary oligonucleotide is excited using a confocal laser scanner, and the positions and intensities of the fluorescent emissions are captured.
| | Sample_data_processing | Full details provided in published manuscript http://jco.ascopubs.org/content/23/31/7911.long
| | Sample_data_processing | normalization algorithm: dChip
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Dimitrios,,Spentzos
| | Sample_contact_email | dspentzo@bidmc.harvard.edu
| | Sample_contact_institute | Beth Israel Deaconess Medical Center
| | Sample_contact_address | 330 Brookline Avenue
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02215
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM774nnn/GSM774571/suppl/GSM774571_091803_HU95AV2_TL_15D7.CEL.gz
| | Sample_series_id | GSE31245
| | Sample_data_row_count | 12558
| | |
|
GSM774572 | GPL8300 |
|
Ovarian cancer sample 57
|
Ovarian cancer
|
overall survival (months): 30
overall survival (censored 1=event)): 1
|
|
| Sample_geo_accession | GSM774572
| | Sample_status | Public on Aug 12 2011
| | Sample_submission_date | Aug 07 2011
| | Sample_last_update_date | Aug 12 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was isolated using the trizol protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | RNA is converted into cDNA using a T7 promoter-tailed oligo-dT primer in the synthesis of the first cDNA strand; second strand cDNA synthesis is then carried out.
| | Sample_hyb_protocol | The double-stranded cDNA is used as the template in an in vitro transcription (IVT) reaction catalyzed by T7 polymerase and containing biotinylated CTP and UTP in addition to the four unmodified ribonucleoside triphosphates
| | Sample_scan_protocol | Each cRNA bound at its complementary oligonucleotide is excited using a confocal laser scanner, and the positions and intensities of the fluorescent emissions are captured.
| | Sample_data_processing | Full details provided in published manuscript http://jco.ascopubs.org/content/23/31/7911.long
| | Sample_data_processing | normalization algorithm: dChip
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Dimitrios,,Spentzos
| | Sample_contact_email | dspentzo@bidmc.harvard.edu
| | Sample_contact_institute | Beth Israel Deaconess Medical Center
| | Sample_contact_address | 330 Brookline Avenue
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02215
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM774nnn/GSM774572/suppl/GSM774572_091803_HU95AV2_TL_15D8.CEL.gz
| | Sample_series_id | GSE31245
| | Sample_data_row_count | 12558
| | |
|
GSM774573 | GPL8300 |
|
Ovarian cancer sample 58
|
Ovarian cancer
|
overall survival (months): 38
overall survival (censored 1=event)): 0
|
|
| Sample_geo_accession | GSM774573
| | Sample_status | Public on Aug 12 2011
| | Sample_submission_date | Aug 07 2011
| | Sample_last_update_date | Aug 12 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was isolated using the trizol protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | RNA is converted into cDNA using a T7 promoter-tailed oligo-dT primer in the synthesis of the first cDNA strand; second strand cDNA synthesis is then carried out.
| | Sample_hyb_protocol | The double-stranded cDNA is used as the template in an in vitro transcription (IVT) reaction catalyzed by T7 polymerase and containing biotinylated CTP and UTP in addition to the four unmodified ribonucleoside triphosphates
| | Sample_scan_protocol | Each cRNA bound at its complementary oligonucleotide is excited using a confocal laser scanner, and the positions and intensities of the fluorescent emissions are captured.
| | Sample_data_processing | Full details provided in published manuscript http://jco.ascopubs.org/content/23/31/7911.long
| | Sample_data_processing | normalization algorithm: dChip
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Dimitrios,,Spentzos
| | Sample_contact_email | dspentzo@bidmc.harvard.edu
| | Sample_contact_institute | Beth Israel Deaconess Medical Center
| | Sample_contact_address | 330 Brookline Avenue
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02215
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM774nnn/GSM774573/suppl/GSM774573_091803_HU95AV2_TL_15D9.CEL.gz
| | Sample_series_id | GSE31245
| | Sample_data_row_count | 12558
| | |
|
| |
| |
Make groups for comparisons |
(2 groups will be compared at a time) |
|
| Select GSMs and click on "Add groups" |
Enter the group name here: |
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