Search results for the GEO ID: GSE31281  |
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GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM775303 | GPL1261 |
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Yap+/+
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wild type liver
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tissue: liver
strain: C57BL/6
genotype/variation: Yap+/+
age: postnatal day 30
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gene expression data from postnatal day 30 livers
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| Sample_geo_accession | GSM775303
| | Sample_status | Public on Apr 05 2012
| | Sample_submission_date | Aug 09 2011
| | Sample_last_update_date | Apr 05 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | No treatments were given to the mice.
| | Sample_growth_protocol_ch1 | Yap+/- mice were bred on C57BL/6 backgournd for at least 6 generations before use in these experiments. Yap+/+ and Yap+/- mice were sacrificed at PND30, livers were removed and stored at -80 deg. C. Pooled livers from 5 mice per group were used for gene array experiments.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol / Phase lock gel protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated In-vitro Transcription using the GeneChip 3` IVT Express Kit
| | Sample_hyb_protocol | 200ul hybridization solution per GeneChip using GeneChip Hybridization, Wash and Stain Kit.
| | Sample_scan_protocol | Single Scan; Affymetrix GeneChip Scanner 3000 7G with Autoloader; Affymetrix GeneChip Command Console (AGCC) ver. 1.1
| | Sample_data_processing | The data were analyzed with Partek Genomics Suite version 6.5 (RMA) using RMA default analysis settings: RMA Background Correction; Quantile Normalization; Median Polish probeset summarization.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Udayan,,Apte
| | Sample_contact_email | uapte@kumc.edu
| | Sample_contact_phone | 9135889247
| | Sample_contact_fax | 9135887501
| | Sample_contact_laboratory | Apte Laboratory
| | Sample_contact_department | Pharmacology
| | Sample_contact_institute | University of Kansas Medical Center
| | Sample_contact_address | 3901 Rainbow Blvd, MS1018
| | Sample_contact_city | Kansas City
| | Sample_contact_state | KS
| | Sample_contact_zip/postal_code | 66160
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM775nnn/GSM775303/suppl/GSM775303.CEL.gz
| | Sample_series_id | GSE31281
| | Sample_data_row_count | 45101
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GSM775304 | GPL1261 |
|
Yap+/-
|
postnatal day 30 liver of Yap+/-
|
tissue: liver
strain: C57BL/6
genotype/variation: Yap+/-
age: postnatal day 30
|
gene expression data from postnatal day 30 livers
|
| Sample_geo_accession | GSM775304
| | Sample_status | Public on Apr 05 2012
| | Sample_submission_date | Aug 09 2011
| | Sample_last_update_date | Apr 05 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | No treatments were given to the mice.
| | Sample_growth_protocol_ch1 | Yap+/- mice were bred on C57BL/6 backgournd for at least 6 generations before use in these experiments. Yap+/+ and Yap+/- mice were sacrificed at PND30, livers were removed and stored at -80 deg. C. Pooled livers from 5 mice per group were used for gene array experiments.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol / Phase lock gel protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated In-vitro Transcription using the GeneChip 3` IVT Express Kit
| | Sample_hyb_protocol | 200ul hybridization solution per GeneChip using GeneChip Hybridization, Wash and Stain Kit.
| | Sample_scan_protocol | Single Scan; Affymetrix GeneChip Scanner 3000 7G with Autoloader; Affymetrix GeneChip Command Console (AGCC) ver. 1.1
| | Sample_data_processing | The data were analyzed with Partek Genomics Suite version 6.5 (RMA) using RMA default analysis settings: RMA Background Correction; Quantile Normalization; Median Polish probeset summarization.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Udayan,,Apte
| | Sample_contact_email | uapte@kumc.edu
| | Sample_contact_phone | 9135889247
| | Sample_contact_fax | 9135887501
| | Sample_contact_laboratory | Apte Laboratory
| | Sample_contact_department | Pharmacology
| | Sample_contact_institute | University of Kansas Medical Center
| | Sample_contact_address | 3901 Rainbow Blvd, MS1018
| | Sample_contact_city | Kansas City
| | Sample_contact_state | KS
| | Sample_contact_zip/postal_code | 66160
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM775nnn/GSM775304/suppl/GSM775304.CEL.gz
| | Sample_series_id | GSE31281
| | Sample_data_row_count | 45101
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