Search results for the GEO ID: GSE31354  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM777498 | GPL1261 |
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ES_WT_rep1
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ES cell RNA
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cell type: Embryonic Stem Cells
genotype/variation: WT
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| Sample_geo_accession | GSM777498
| | Sample_status | Public on Aug 12 2011
| | Sample_submission_date | Aug 12 2011
| | Sample_last_update_date | Aug 12 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted independently from three Suz12 and three Suz12 ES cell clones. RNA was quantified, and equal amounts fromthe three Suz12 WT and the three Suz12 KO samples were pooled into one sample to reduce the experimental variation.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Targets for microarray hybridization were synthesized according to the supplier’s instructions (Affymetrix).
| | Sample_hyb_protocol | Performed at the Affymetrix microarray unit at the Institute of Molecular Oncology of the Italian Foundation for Cancer Research-European Institute of Oncology campus, Milan, Italy, according to the manufacturer’s instructions.
| | Sample_scan_protocol | Performed at the Affymetrix microarray unit at the Institute of Molecular Oncology of the Italian Foundation for Cancer Research-European Institute of Oncology campus, Milan, Italy, according to the manufacturer’s instructions.
| | Sample_data_processing | Data were processed using standard procedures: Programmatic identifier: GeneChip.CallGEBaseCall.1; Algorithm: ExpressionStat 5.0
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Diego,,Pasini
| | Sample_contact_email | diego.pasini@ifom-ieo-campus.it
| | Sample_contact_department | Experimental Oncology
| | Sample_contact_institute | European Institute of Oncology
| | Sample_contact_address | Via Adamello, 16
| | Sample_contact_city | Milano
| | Sample_contact_zip/postal_code | 20139
| | Sample_contact_country | Italy
| | Sample_contact_web_link | http://www.ifom-ieo-campus.it/research/pasini.php
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM777nnn/GSM777498/suppl/GSM777498.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM777nnn/GSM777498/suppl/GSM777498.CHP.gz
| | Sample_series_id | GSE31354
| | Sample_data_row_count | 45101
| | |
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GSM777499 | GPL1261 |
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ES_WT_rep2
|
ES cell RNA
|
cell type: Embryonic Stem Cells
genotype/variation: WT
|
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| Sample_geo_accession | GSM777499
| | Sample_status | Public on Aug 12 2011
| | Sample_submission_date | Aug 12 2011
| | Sample_last_update_date | Aug 12 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted independently from three Suz12 and three Suz12 ES cell clones. RNA was quantified, and equal amounts fromthe three Suz12 WT and the three Suz12 KO samples were pooled into one sample to reduce the experimental variation.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Targets for microarray hybridization were synthesized according to the supplier’s instructions (Affymetrix).
| | Sample_hyb_protocol | Performed at the Affymetrix microarray unit at the Institute of Molecular Oncology of the Italian Foundation for Cancer Research-European Institute of Oncology campus, Milan, Italy, according to the manufacturer’s instructions.
| | Sample_scan_protocol | Performed at the Affymetrix microarray unit at the Institute of Molecular Oncology of the Italian Foundation for Cancer Research-European Institute of Oncology campus, Milan, Italy, according to the manufacturer’s instructions.
| | Sample_data_processing | Data were processed using standard procedures: Programmatic identifier: GeneChip.CallGEBaseCall.1; Algorithm: ExpressionStat 5.0
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Diego,,Pasini
| | Sample_contact_email | diego.pasini@ifom-ieo-campus.it
| | Sample_contact_department | Experimental Oncology
| | Sample_contact_institute | European Institute of Oncology
| | Sample_contact_address | Via Adamello, 16
| | Sample_contact_city | Milano
| | Sample_contact_zip/postal_code | 20139
| | Sample_contact_country | Italy
| | Sample_contact_web_link | http://www.ifom-ieo-campus.it/research/pasini.php
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM777nnn/GSM777499/suppl/GSM777499.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM777nnn/GSM777499/suppl/GSM777499.CHP.gz
| | Sample_series_id | GSE31354
| | Sample_data_row_count | 45101
| | |
|
GSM777500 | GPL1261 |
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ES_Suz12KO_rep1
|
ES cell RNA
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cell type: Embryonic Stem Cells
genotype/variation: Suz12KO
|
|
| Sample_geo_accession | GSM777500
| | Sample_status | Public on Aug 12 2011
| | Sample_submission_date | Aug 12 2011
| | Sample_last_update_date | Aug 12 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted independently from three Suz12 and three Suz12 ES cell clones. RNA was quantified, and equal amounts fromthe three Suz12 WT and the three Suz12 KO samples were pooled into one sample to reduce the experimental variation.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Targets for microarray hybridization were synthesized according to the supplier’s instructions (Affymetrix).
| | Sample_hyb_protocol | Performed at the Affymetrix microarray unit at the Institute of Molecular Oncology of the Italian Foundation for Cancer Research-European Institute of Oncology campus, Milan, Italy, according to the manufacturer’s instructions.
| | Sample_scan_protocol | Performed at the Affymetrix microarray unit at the Institute of Molecular Oncology of the Italian Foundation for Cancer Research-European Institute of Oncology campus, Milan, Italy, according to the manufacturer’s instructions.
| | Sample_data_processing | Data were processed using standard procedures: Programmatic identifier: GeneChip.CallGEBaseCall.1; Algorithm: ExpressionStat 5.0
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Diego,,Pasini
| | Sample_contact_email | diego.pasini@ifom-ieo-campus.it
| | Sample_contact_department | Experimental Oncology
| | Sample_contact_institute | European Institute of Oncology
| | Sample_contact_address | Via Adamello, 16
| | Sample_contact_city | Milano
| | Sample_contact_zip/postal_code | 20139
| | Sample_contact_country | Italy
| | Sample_contact_web_link | http://www.ifom-ieo-campus.it/research/pasini.php
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM777nnn/GSM777500/suppl/GSM777500.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM777nnn/GSM777500/suppl/GSM777500.CHP.gz
| | Sample_series_id | GSE31354
| | Sample_data_row_count | 45101
| | |
|
GSM777501 | GPL1261 |
|
ES_Suz12KO_rep2
|
ES cell RNA
|
cell type: Embryonic Stem Cells
genotype/variation: Suz12KO
|
|
| Sample_geo_accession | GSM777501
| | Sample_status | Public on Aug 12 2011
| | Sample_submission_date | Aug 12 2011
| | Sample_last_update_date | Aug 12 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted independently from three Suz12 and three Suz12 ES cell clones. RNA was quantified, and equal amounts fromthe three Suz12 WT and the three Suz12 KO samples were pooled into one sample to reduce the experimental variation.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Targets for microarray hybridization were synthesized according to the supplier’s instructions (Affymetrix).
| | Sample_hyb_protocol | Performed at the Affymetrix microarray unit at the Institute of Molecular Oncology of the Italian Foundation for Cancer Research-European Institute of Oncology campus, Milan, Italy, according to the manufacturer’s instructions.
| | Sample_scan_protocol | Performed at the Affymetrix microarray unit at the Institute of Molecular Oncology of the Italian Foundation for Cancer Research-European Institute of Oncology campus, Milan, Italy, according to the manufacturer’s instructions.
| | Sample_data_processing | Data were processed using standard procedures: Programmatic identifier: GeneChip.CallGEBaseCall.1; Algorithm: ExpressionStat 5.0
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Diego,,Pasini
| | Sample_contact_email | diego.pasini@ifom-ieo-campus.it
| | Sample_contact_department | Experimental Oncology
| | Sample_contact_institute | European Institute of Oncology
| | Sample_contact_address | Via Adamello, 16
| | Sample_contact_city | Milano
| | Sample_contact_zip/postal_code | 20139
| | Sample_contact_country | Italy
| | Sample_contact_web_link | http://www.ifom-ieo-campus.it/research/pasini.php
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM777nnn/GSM777501/suppl/GSM777501.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM777nnn/GSM777501/suppl/GSM777501.CHP.gz
| | Sample_series_id | GSE31354
| | Sample_data_row_count | 45101
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