Search results for the GEO ID: GSE31430  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM780656 | GPL1355 |
|
PF1_MAS5
|
diencephalone, pair-feeding to ZD for 10 days
|
strain: SD rat
Sex: male
treatment: pair-feeding to ZD for 10 days from 5-wk-old
|
|
| Sample_geo_accession | GSM780656
| | Sample_status | Public on Dec 01 2011
| | Sample_submission_date | Aug 17 2011
| | Sample_last_update_date | Dec 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA samples were isolated from individual diencephalons using the TRIzol reagent (Invitrogen, Carlsbad, CA, USA) and cleaned up using the RNeasy Mini Kit with a DNase treatment (Qiagen, Valencia, CA, USA). The RNA quality and quantity were examined by agarose gel electrophoresis and a spectrophotometer.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | One hundred nanograms of total RNA from each sample was reverse-transcribed, amplified and labeled using the GeneChip 3’IVT Express Kit (Affymetrix, Santa Clara, CA, USA) according to the manufacturer’s protocol.
| | Sample_hyb_protocol | Labeled aRNA samples were hybridized to GeneChip Rat Genome 230 2.0 Arrays (Affymetrix). The arrays were washed, stained with the Fluidics Station (Affymetrix).
| | Sample_scan_protocol | Scanned with the GeneChip Scanner (Affymetrix).
| | Sample_data_processing | Data acquisition was performed using the GeneChip Operating Software (Affymetrix) and analyzed using the MAS5 program (Affymetrix).
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Shinji,,Okada
| | Sample_contact_email | asoka@mail.ecc.u-tokyo.ac.jp
| | Sample_contact_phone | +81-3-5841-8118
| | Sample_contact_fax | +81-3-5841-8118
| | Sample_contact_institute | The University of Tokyo
| | Sample_contact_address | 1-1-1 Yayoi
| | Sample_contact_city | Bunkyo-ku, Tokyo
| | Sample_contact_zip/postal_code | 113-8657
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM780nnn/GSM780656/suppl/GSM780656_PF1__Rat230_2_.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM780nnn/GSM780656/suppl/GSM780656_PF1__Rat230_2_._MAS5.mas5.CHP.gz
| | Sample_series_id | GSE31430
| | Sample_data_row_count | 31099
| | |
|
GSM780657 | GPL1355 |
|
PF2_MAS5
|
diencephalone, pair-feeding to ZD for 10 days
|
strain: SD rat
Sex: male
treatment: pair-feeding to ZD for 10 days from 5-wk-old
|
|
| Sample_geo_accession | GSM780657
| | Sample_status | Public on Dec 01 2011
| | Sample_submission_date | Aug 17 2011
| | Sample_last_update_date | Dec 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA samples were isolated from individual diencephalons using the TRIzol reagent (Invitrogen, Carlsbad, CA, USA) and cleaned up using the RNeasy Mini Kit with a DNase treatment (Qiagen, Valencia, CA, USA). The RNA quality and quantity were examined by agarose gel electrophoresis and a spectrophotometer.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | One hundred nanograms of total RNA from each sample was reverse-transcribed, amplified and labeled using the GeneChip 3’IVT Express Kit (Affymetrix, Santa Clara, CA, USA) according to the manufacturer’s protocol.
| | Sample_hyb_protocol | Labeled aRNA samples were hybridized to GeneChip Rat Genome 230 2.0 Arrays (Affymetrix). The arrays were washed, stained with the Fluidics Station (Affymetrix).
| | Sample_scan_protocol | Scanned with the GeneChip Scanner (Affymetrix).
| | Sample_data_processing | Data acquisition was performed using the GeneChip Operating Software (Affymetrix) and analyzed using the MAS5 program (Affymetrix).
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Shinji,,Okada
| | Sample_contact_email | asoka@mail.ecc.u-tokyo.ac.jp
| | Sample_contact_phone | +81-3-5841-8118
| | Sample_contact_fax | +81-3-5841-8118
| | Sample_contact_institute | The University of Tokyo
| | Sample_contact_address | 1-1-1 Yayoi
| | Sample_contact_city | Bunkyo-ku, Tokyo
| | Sample_contact_zip/postal_code | 113-8657
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM780nnn/GSM780657/suppl/GSM780657_PF2__Rat230_2_.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM780nnn/GSM780657/suppl/GSM780657_PF2__Rat230_2_._MAS5.mas5.CHP.gz
| | Sample_series_id | GSE31430
| | Sample_data_row_count | 31099
| | |
|
GSM780658 | GPL1355 |
|
PF4_MAS5
|
diencephalone, pair-feeding to ZD for 10 days
|
strain: SD rat
Sex: male
treatment: pair-feeding to ZD for 10 days from 5-wk-old
|
|
| Sample_geo_accession | GSM780658
| | Sample_status | Public on Dec 01 2011
| | Sample_submission_date | Aug 17 2011
| | Sample_last_update_date | Dec 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA samples were isolated from individual diencephalons using the TRIzol reagent (Invitrogen, Carlsbad, CA, USA) and cleaned up using the RNeasy Mini Kit with a DNase treatment (Qiagen, Valencia, CA, USA). The RNA quality and quantity were examined by agarose gel electrophoresis and a spectrophotometer.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | One hundred nanograms of total RNA from each sample was reverse-transcribed, amplified and labeled using the GeneChip 3’IVT Express Kit (Affymetrix, Santa Clara, CA, USA) according to the manufacturer’s protocol.
| | Sample_hyb_protocol | Labeled aRNA samples were hybridized to GeneChip Rat Genome 230 2.0 Arrays (Affymetrix). The arrays were washed, stained with the Fluidics Station (Affymetrix).
| | Sample_scan_protocol | Scanned with the GeneChip Scanner (Affymetrix).
| | Sample_data_processing | Data acquisition was performed using the GeneChip Operating Software (Affymetrix) and analyzed using the MAS5 program (Affymetrix).
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Shinji,,Okada
| | Sample_contact_email | asoka@mail.ecc.u-tokyo.ac.jp
| | Sample_contact_phone | +81-3-5841-8118
| | Sample_contact_fax | +81-3-5841-8118
| | Sample_contact_institute | The University of Tokyo
| | Sample_contact_address | 1-1-1 Yayoi
| | Sample_contact_city | Bunkyo-ku, Tokyo
| | Sample_contact_zip/postal_code | 113-8657
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM780nnn/GSM780658/suppl/GSM780658_PF4__Rat230_2_.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM780nnn/GSM780658/suppl/GSM780658_PF4__Rat230_2_._MAS5.mas5.CHP.gz
| | Sample_series_id | GSE31430
| | Sample_data_row_count | 31099
| | |
|
GSM780659 | GPL1355 |
|
PF6_MAS5
|
diencephalone, pair-feeding to ZD for 10 days
|
strain: SD rat
Sex: male
treatment: pair-feeding to ZD for 10 days from 5-wk-old
|
|
| Sample_geo_accession | GSM780659
| | Sample_status | Public on Dec 01 2011
| | Sample_submission_date | Aug 17 2011
| | Sample_last_update_date | Dec 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA samples were isolated from individual diencephalons using the TRIzol reagent (Invitrogen, Carlsbad, CA, USA) and cleaned up using the RNeasy Mini Kit with a DNase treatment (Qiagen, Valencia, CA, USA). The RNA quality and quantity were examined by agarose gel electrophoresis and a spectrophotometer.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | One hundred nanograms of total RNA from each sample was reverse-transcribed, amplified and labeled using the GeneChip 3’IVT Express Kit (Affymetrix, Santa Clara, CA, USA) according to the manufacturer’s protocol.
| | Sample_hyb_protocol | Labeled aRNA samples were hybridized to GeneChip Rat Genome 230 2.0 Arrays (Affymetrix). The arrays were washed, stained with the Fluidics Station (Affymetrix).
| | Sample_scan_protocol | Scanned with the GeneChip Scanner (Affymetrix).
| | Sample_data_processing | Data acquisition was performed using the GeneChip Operating Software (Affymetrix) and analyzed using the MAS5 program (Affymetrix).
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Shinji,,Okada
| | Sample_contact_email | asoka@mail.ecc.u-tokyo.ac.jp
| | Sample_contact_phone | +81-3-5841-8118
| | Sample_contact_fax | +81-3-5841-8118
| | Sample_contact_institute | The University of Tokyo
| | Sample_contact_address | 1-1-1 Yayoi
| | Sample_contact_city | Bunkyo-ku, Tokyo
| | Sample_contact_zip/postal_code | 113-8657
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM780nnn/GSM780659/suppl/GSM780659_PF6__Rat230_2__2.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM780nnn/GSM780659/suppl/GSM780659_PF6__Rat230_2__2._MAS5.mas5.CHP.gz
| | Sample_series_id | GSE31430
| | Sample_data_row_count | 31099
| | |
|
GSM780660 | GPL1355 |
|
ZD2_MAS5
|
diencephalone, zinc-deficiency for 10 days
|
strain: SD rat
Sex: male
treatment: zinc-deficiency for 10 days from 5-wk-old
|
|
| Sample_geo_accession | GSM780660
| | Sample_status | Public on Dec 01 2011
| | Sample_submission_date | Aug 17 2011
| | Sample_last_update_date | Dec 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA samples were isolated from individual diencephalons using the TRIzol reagent (Invitrogen, Carlsbad, CA, USA) and cleaned up using the RNeasy Mini Kit with a DNase treatment (Qiagen, Valencia, CA, USA). The RNA quality and quantity were examined by agarose gel electrophoresis and a spectrophotometer.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | One hundred nanograms of total RNA from each sample was reverse-transcribed, amplified and labeled using the GeneChip 3’IVT Express Kit (Affymetrix, Santa Clara, CA, USA) according to the manufacturer’s protocol.
| | Sample_hyb_protocol | Labeled aRNA samples were hybridized to GeneChip Rat Genome 230 2.0 Arrays (Affymetrix). The arrays were washed, stained with the Fluidics Station (Affymetrix).
| | Sample_scan_protocol | Scanned with the GeneChip Scanner (Affymetrix).
| | Sample_data_processing | Data acquisition was performed using the GeneChip Operating Software (Affymetrix) and analyzed using the MAS5 program (Affymetrix).
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Shinji,,Okada
| | Sample_contact_email | asoka@mail.ecc.u-tokyo.ac.jp
| | Sample_contact_phone | +81-3-5841-8118
| | Sample_contact_fax | +81-3-5841-8118
| | Sample_contact_institute | The University of Tokyo
| | Sample_contact_address | 1-1-1 Yayoi
| | Sample_contact_city | Bunkyo-ku, Tokyo
| | Sample_contact_zip/postal_code | 113-8657
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM780nnn/GSM780660/suppl/GSM780660_ZD2__Rat230_2_.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM780nnn/GSM780660/suppl/GSM780660_ZD2__Rat230_2_._MAS5.mas5.CHP.gz
| | Sample_series_id | GSE31430
| | Sample_data_row_count | 31099
| | |
|
GSM780661 | GPL1355 |
|
ZD3_MAS5
|
diencephalone, zinc-deficiency for 10 days
|
strain: SD rat
Sex: male
treatment: zinc-deficiency for 10 days from 5-wk-old
|
|
| Sample_geo_accession | GSM780661
| | Sample_status | Public on Dec 01 2011
| | Sample_submission_date | Aug 17 2011
| | Sample_last_update_date | Dec 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA samples were isolated from individual diencephalons using the TRIzol reagent (Invitrogen, Carlsbad, CA, USA) and cleaned up using the RNeasy Mini Kit with a DNase treatment (Qiagen, Valencia, CA, USA). The RNA quality and quantity were examined by agarose gel electrophoresis and a spectrophotometer.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | One hundred nanograms of total RNA from each sample was reverse-transcribed, amplified and labeled using the GeneChip 3’IVT Express Kit (Affymetrix, Santa Clara, CA, USA) according to the manufacturer’s protocol.
| | Sample_hyb_protocol | Labeled aRNA samples were hybridized to GeneChip Rat Genome 230 2.0 Arrays (Affymetrix). The arrays were washed, stained with the Fluidics Station (Affymetrix).
| | Sample_scan_protocol | Scanned with the GeneChip Scanner (Affymetrix).
| | Sample_data_processing | Data acquisition was performed using the GeneChip Operating Software (Affymetrix) and analyzed using the MAS5 program (Affymetrix).
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Shinji,,Okada
| | Sample_contact_email | asoka@mail.ecc.u-tokyo.ac.jp
| | Sample_contact_phone | +81-3-5841-8118
| | Sample_contact_fax | +81-3-5841-8118
| | Sample_contact_institute | The University of Tokyo
| | Sample_contact_address | 1-1-1 Yayoi
| | Sample_contact_city | Bunkyo-ku, Tokyo
| | Sample_contact_zip/postal_code | 113-8657
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM780nnn/GSM780661/suppl/GSM780661_ZD3__Rat230_2_.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM780nnn/GSM780661/suppl/GSM780661_ZD3__Rat230_2_._MAS5.mas5.CHP.gz
| | Sample_series_id | GSE31430
| | Sample_data_row_count | 31099
| | |
|
GSM780662 | GPL1355 |
|
ZD8_MAS5
|
diencephalone, zinc-deficiency for 10 days
|
strain: SD rat
Sex: male
treatment: zinc-deficiency for 10 days from 5-wk-old
|
|
| Sample_geo_accession | GSM780662
| | Sample_status | Public on Dec 01 2011
| | Sample_submission_date | Aug 17 2011
| | Sample_last_update_date | Dec 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA samples were isolated from individual diencephalons using the TRIzol reagent (Invitrogen, Carlsbad, CA, USA) and cleaned up using the RNeasy Mini Kit with a DNase treatment (Qiagen, Valencia, CA, USA). The RNA quality and quantity were examined by agarose gel electrophoresis and a spectrophotometer.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | One hundred nanograms of total RNA from each sample was reverse-transcribed, amplified and labeled using the GeneChip 3’IVT Express Kit (Affymetrix, Santa Clara, CA, USA) according to the manufacturer’s protocol.
| | Sample_hyb_protocol | Labeled aRNA samples were hybridized to GeneChip Rat Genome 230 2.0 Arrays (Affymetrix). The arrays were washed, stained with the Fluidics Station (Affymetrix).
| | Sample_scan_protocol | Scanned with the GeneChip Scanner (Affymetrix).
| | Sample_data_processing | Data acquisition was performed using the GeneChip Operating Software (Affymetrix) and analyzed using the MAS5 program (Affymetrix).
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Shinji,,Okada
| | Sample_contact_email | asoka@mail.ecc.u-tokyo.ac.jp
| | Sample_contact_phone | +81-3-5841-8118
| | Sample_contact_fax | +81-3-5841-8118
| | Sample_contact_institute | The University of Tokyo
| | Sample_contact_address | 1-1-1 Yayoi
| | Sample_contact_city | Bunkyo-ku, Tokyo
| | Sample_contact_zip/postal_code | 113-8657
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM780nnn/GSM780662/suppl/GSM780662_ZD8__Rat230_2_.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM780nnn/GSM780662/suppl/GSM780662_ZD8__Rat230_2_._MAS5.mas5.CHP.gz
| | Sample_series_id | GSE31430
| | Sample_data_row_count | 31099
| | |
|
GSM780663 | GPL1355 |
|
ZD9_MAS5
|
diencephalone, zinc-deficiency for 10 days
|
strain: SD rat
Sex: male
treatment: zinc-deficiency for 10 days from 5-wk-old
|
|
| Sample_geo_accession | GSM780663
| | Sample_status | Public on Dec 01 2011
| | Sample_submission_date | Aug 17 2011
| | Sample_last_update_date | Dec 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA samples were isolated from individual diencephalons using the TRIzol reagent (Invitrogen, Carlsbad, CA, USA) and cleaned up using the RNeasy Mini Kit with a DNase treatment (Qiagen, Valencia, CA, USA). The RNA quality and quantity were examined by agarose gel electrophoresis and a spectrophotometer.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | One hundred nanograms of total RNA from each sample was reverse-transcribed, amplified and labeled using the GeneChip 3’IVT Express Kit (Affymetrix, Santa Clara, CA, USA) according to the manufacturer’s protocol.
| | Sample_hyb_protocol | Labeled aRNA samples were hybridized to GeneChip Rat Genome 230 2.0 Arrays (Affymetrix). The arrays were washed, stained with the Fluidics Station (Affymetrix).
| | Sample_scan_protocol | Scanned with the GeneChip Scanner (Affymetrix).
| | Sample_data_processing | Data acquisition was performed using the GeneChip Operating Software (Affymetrix) and analyzed using the MAS5 program (Affymetrix).
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Shinji,,Okada
| | Sample_contact_email | asoka@mail.ecc.u-tokyo.ac.jp
| | Sample_contact_phone | +81-3-5841-8118
| | Sample_contact_fax | +81-3-5841-8118
| | Sample_contact_institute | The University of Tokyo
| | Sample_contact_address | 1-1-1 Yayoi
| | Sample_contact_city | Bunkyo-ku, Tokyo
| | Sample_contact_zip/postal_code | 113-8657
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM780nnn/GSM780663/suppl/GSM780663_ZD9__Rat230_2_.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM780nnn/GSM780663/suppl/GSM780663_ZD9__Rat230_2_._MAS5.mas5.CHP.gz
| | Sample_series_id | GSE31430
| | Sample_data_row_count | 31099
| | |
|
GSM780664 | GPL1355 |
|
ZRPF2_MAS5
|
diencephalone, pair-feeding to ZR for 16 days
|
strain: SD rat
Sex: male
treatment: pair-feeding to ZR for 16 days from 5-wk-old
|
|
| Sample_geo_accession | GSM780664
| | Sample_status | Public on Dec 01 2011
| | Sample_submission_date | Aug 17 2011
| | Sample_last_update_date | Dec 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA samples were isolated from individual diencephalons using the TRIzol reagent (Invitrogen, Carlsbad, CA, USA) and cleaned up using the RNeasy Mini Kit with a DNase treatment (Qiagen, Valencia, CA, USA). The RNA quality and quantity were examined by agarose gel electrophoresis and a spectrophotometer.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | One hundred nanograms of total RNA from each sample was reverse-transcribed, amplified and labeled using the GeneChip 3’IVT Express Kit (Affymetrix, Santa Clara, CA, USA) according to the manufacturer’s protocol.
| | Sample_hyb_protocol | Labeled aRNA samples were hybridized to GeneChip Rat Genome 230 2.0 Arrays (Affymetrix). The arrays were washed, stained with the Fluidics Station (Affymetrix).
| | Sample_scan_protocol | Scanned with the GeneChip Scanner (Affymetrix).
| | Sample_data_processing | Data acquisition was performed using the GeneChip Operating Software (Affymetrix) and analyzed using the MAS5 program (Affymetrix).
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Shinji,,Okada
| | Sample_contact_email | asoka@mail.ecc.u-tokyo.ac.jp
| | Sample_contact_phone | +81-3-5841-8118
| | Sample_contact_fax | +81-3-5841-8118
| | Sample_contact_institute | The University of Tokyo
| | Sample_contact_address | 1-1-1 Yayoi
| | Sample_contact_city | Bunkyo-ku, Tokyo
| | Sample_contact_zip/postal_code | 113-8657
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM780nnn/GSM780664/suppl/GSM780664_RPF2__Rat230_2_.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM780nnn/GSM780664/suppl/GSM780664_RPF2__Rat230_2_._MAS5.mas5.CHP.gz
| | Sample_series_id | GSE31430
| | Sample_data_row_count | 31099
| | |
|
GSM780665 | GPL1355 |
|
ZRPF4_MAS5
|
diencephalone, pair-feeding to ZR for 16 days
|
strain: SD rat
Sex: male
treatment: pair-feeding to ZR for 16 days from 5-wk-old
|
|
| Sample_geo_accession | GSM780665
| | Sample_status | Public on Dec 01 2011
| | Sample_submission_date | Aug 17 2011
| | Sample_last_update_date | Dec 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA samples were isolated from individual diencephalons using the TRIzol reagent (Invitrogen, Carlsbad, CA, USA) and cleaned up using the RNeasy Mini Kit with a DNase treatment (Qiagen, Valencia, CA, USA). The RNA quality and quantity were examined by agarose gel electrophoresis and a spectrophotometer.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | One hundred nanograms of total RNA from each sample was reverse-transcribed, amplified and labeled using the GeneChip 3’IVT Express Kit (Affymetrix, Santa Clara, CA, USA) according to the manufacturer’s protocol.
| | Sample_hyb_protocol | Labeled aRNA samples were hybridized to GeneChip Rat Genome 230 2.0 Arrays (Affymetrix). The arrays were washed, stained with the Fluidics Station (Affymetrix).
| | Sample_scan_protocol | Scanned with the GeneChip Scanner (Affymetrix).
| | Sample_data_processing | Data acquisition was performed using the GeneChip Operating Software (Affymetrix) and analyzed using the MAS5 program (Affymetrix).
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Shinji,,Okada
| | Sample_contact_email | asoka@mail.ecc.u-tokyo.ac.jp
| | Sample_contact_phone | +81-3-5841-8118
| | Sample_contact_fax | +81-3-5841-8118
| | Sample_contact_institute | The University of Tokyo
| | Sample_contact_address | 1-1-1 Yayoi
| | Sample_contact_city | Bunkyo-ku, Tokyo
| | Sample_contact_zip/postal_code | 113-8657
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM780nnn/GSM780665/suppl/GSM780665_RPF4__Rat230_2_.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM780nnn/GSM780665/suppl/GSM780665_RPF4__Rat230_2_._MAS5.mas5.CHP.gz
| | Sample_series_id | GSE31430
| | Sample_data_row_count | 31099
| | |
|
GSM780666 | GPL1355 |
|
ZRPF5_MAS5
|
diencephalone, pair-feeding to ZR for 16 days
|
strain: SD rat
Sex: male
treatment: pair-feeding to ZR for 16 days from 5-wk-old
|
|
| Sample_geo_accession | GSM780666
| | Sample_status | Public on Dec 01 2011
| | Sample_submission_date | Aug 17 2011
| | Sample_last_update_date | Dec 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA samples were isolated from individual diencephalons using the TRIzol reagent (Invitrogen, Carlsbad, CA, USA) and cleaned up using the RNeasy Mini Kit with a DNase treatment (Qiagen, Valencia, CA, USA). The RNA quality and quantity were examined by agarose gel electrophoresis and a spectrophotometer.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | One hundred nanograms of total RNA from each sample was reverse-transcribed, amplified and labeled using the GeneChip 3’IVT Express Kit (Affymetrix, Santa Clara, CA, USA) according to the manufacturer’s protocol.
| | Sample_hyb_protocol | Labeled aRNA samples were hybridized to GeneChip Rat Genome 230 2.0 Arrays (Affymetrix). The arrays were washed, stained with the Fluidics Station (Affymetrix).
| | Sample_scan_protocol | Scanned with the GeneChip Scanner (Affymetrix).
| | Sample_data_processing | Data acquisition was performed using the GeneChip Operating Software (Affymetrix) and analyzed using the MAS5 program (Affymetrix).
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Shinji,,Okada
| | Sample_contact_email | asoka@mail.ecc.u-tokyo.ac.jp
| | Sample_contact_phone | +81-3-5841-8118
| | Sample_contact_fax | +81-3-5841-8118
| | Sample_contact_institute | The University of Tokyo
| | Sample_contact_address | 1-1-1 Yayoi
| | Sample_contact_city | Bunkyo-ku, Tokyo
| | Sample_contact_zip/postal_code | 113-8657
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM780nnn/GSM780666/suppl/GSM780666_rpf5__Rat230_2_.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM780nnn/GSM780666/suppl/GSM780666_rpf5__Rat230_2_._MAS5.mas5.CHP.gz
| | Sample_series_id | GSE31430
| | Sample_data_row_count | 31099
| | |
|
GSM780667 | GPL1355 |
|
ZRPF6_MAS5
|
diencephalone, pair-feeding to ZR for 16 days
|
strain: SD rat
Sex: male
treatment: pair-feeding to ZR for 16 days from 5-wk-old
|
|
| Sample_geo_accession | GSM780667
| | Sample_status | Public on Dec 01 2011
| | Sample_submission_date | Aug 17 2011
| | Sample_last_update_date | Dec 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA samples were isolated from individual diencephalons using the TRIzol reagent (Invitrogen, Carlsbad, CA, USA) and cleaned up using the RNeasy Mini Kit with a DNase treatment (Qiagen, Valencia, CA, USA). The RNA quality and quantity were examined by agarose gel electrophoresis and a spectrophotometer.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | One hundred nanograms of total RNA from each sample was reverse-transcribed, amplified and labeled using the GeneChip 3’IVT Express Kit (Affymetrix, Santa Clara, CA, USA) according to the manufacturer’s protocol.
| | Sample_hyb_protocol | Labeled aRNA samples were hybridized to GeneChip Rat Genome 230 2.0 Arrays (Affymetrix). The arrays were washed, stained with the Fluidics Station (Affymetrix).
| | Sample_scan_protocol | Scanned with the GeneChip Scanner (Affymetrix).
| | Sample_data_processing | Data acquisition was performed using the GeneChip Operating Software (Affymetrix) and analyzed using the MAS5 program (Affymetrix).
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Shinji,,Okada
| | Sample_contact_email | asoka@mail.ecc.u-tokyo.ac.jp
| | Sample_contact_phone | +81-3-5841-8118
| | Sample_contact_fax | +81-3-5841-8118
| | Sample_contact_institute | The University of Tokyo
| | Sample_contact_address | 1-1-1 Yayoi
| | Sample_contact_city | Bunkyo-ku, Tokyo
| | Sample_contact_zip/postal_code | 113-8657
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM780nnn/GSM780667/suppl/GSM780667_rpf6__Rat230_2_.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM780nnn/GSM780667/suppl/GSM780667_rpf6__Rat230_2_._MAS5.mas5.CHP.gz
| | Sample_series_id | GSE31430
| | Sample_data_row_count | 31099
| | |
|
GSM780668 | GPL1355 |
|
ZR7_MAS5
|
diencephalone, zinc-deficiency for 10 days followed by zinc-recovery for 6 days
|
strain: SD rat
Sex: male
treatment: zinc-deficiency for 10 days from 5-wk-old followed by zinc-recovery for 6 days
|
|
| Sample_geo_accession | GSM780668
| | Sample_status | Public on Dec 01 2011
| | Sample_submission_date | Aug 17 2011
| | Sample_last_update_date | Dec 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA samples were isolated from individual diencephalons using the TRIzol reagent (Invitrogen, Carlsbad, CA, USA) and cleaned up using the RNeasy Mini Kit with a DNase treatment (Qiagen, Valencia, CA, USA). The RNA quality and quantity were examined by agarose gel electrophoresis and a spectrophotometer.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | One hundred nanograms of total RNA from each sample was reverse-transcribed, amplified and labeled using the GeneChip 3’IVT Express Kit (Affymetrix, Santa Clara, CA, USA) according to the manufacturer’s protocol.
| | Sample_hyb_protocol | Labeled aRNA samples were hybridized to GeneChip Rat Genome 230 2.0 Arrays (Affymetrix). The arrays were washed, stained with the Fluidics Station (Affymetrix).
| | Sample_scan_protocol | Scanned with the GeneChip Scanner (Affymetrix).
| | Sample_data_processing | Data acquisition was performed using the GeneChip Operating Software (Affymetrix) and analyzed using the MAS5 program (Affymetrix).
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Shinji,,Okada
| | Sample_contact_email | asoka@mail.ecc.u-tokyo.ac.jp
| | Sample_contact_phone | +81-3-5841-8118
| | Sample_contact_fax | +81-3-5841-8118
| | Sample_contact_institute | The University of Tokyo
| | Sample_contact_address | 1-1-1 Yayoi
| | Sample_contact_city | Bunkyo-ku, Tokyo
| | Sample_contact_zip/postal_code | 113-8657
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM780nnn/GSM780668/suppl/GSM780668_ZR7__Rat230_2_.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM780nnn/GSM780668/suppl/GSM780668_ZR7__Rat230_2_._MAS5.mas5.CHP.gz
| | Sample_series_id | GSE31430
| | Sample_data_row_count | 31099
| | |
|
GSM780669 | GPL1355 |
|
ZR10_MAS5
|
diencephalone, zinc-deficiency for 10 days followed by zinc-recovery for 6 days
|
strain: SD rat
Sex: male
treatment: zinc-deficiency for 10 days from 5-wk-old followed by zinc-recovery for 6 days
|
|
| Sample_geo_accession | GSM780669
| | Sample_status | Public on Dec 01 2011
| | Sample_submission_date | Aug 17 2011
| | Sample_last_update_date | Dec 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA samples were isolated from individual diencephalons using the TRIzol reagent (Invitrogen, Carlsbad, CA, USA) and cleaned up using the RNeasy Mini Kit with a DNase treatment (Qiagen, Valencia, CA, USA). The RNA quality and quantity were examined by agarose gel electrophoresis and a spectrophotometer.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | One hundred nanograms of total RNA from each sample was reverse-transcribed, amplified and labeled using the GeneChip 3’IVT Express Kit (Affymetrix, Santa Clara, CA, USA) according to the manufacturer’s protocol.
| | Sample_hyb_protocol | Labeled aRNA samples were hybridized to GeneChip Rat Genome 230 2.0 Arrays (Affymetrix). The arrays were washed, stained with the Fluidics Station (Affymetrix).
| | Sample_scan_protocol | Scanned with the GeneChip Scanner (Affymetrix).
| | Sample_data_processing | Data acquisition was performed using the GeneChip Operating Software (Affymetrix) and analyzed using the MAS5 program (Affymetrix).
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Shinji,,Okada
| | Sample_contact_email | asoka@mail.ecc.u-tokyo.ac.jp
| | Sample_contact_phone | +81-3-5841-8118
| | Sample_contact_fax | +81-3-5841-8118
| | Sample_contact_institute | The University of Tokyo
| | Sample_contact_address | 1-1-1 Yayoi
| | Sample_contact_city | Bunkyo-ku, Tokyo
| | Sample_contact_zip/postal_code | 113-8657
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM780nnn/GSM780669/suppl/GSM780669_ZR10__Rat230_2_.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM780nnn/GSM780669/suppl/GSM780669_ZR10__Rat230_2_._MAS5.mas5.CHP.gz
| | Sample_series_id | GSE31430
| | Sample_data_row_count | 31099
| | |
|
GSM780670 | GPL1355 |
|
ZR13_MAS5
|
diencephalone, zinc-deficiency for 10 days followed by zinc-recovery for 6 days
|
strain: SD rat
Sex: male
treatment: zinc-deficiency for 10 days from 5-wk-old followed by zinc-recovery for 6 days
|
|
| Sample_geo_accession | GSM780670
| | Sample_status | Public on Dec 01 2011
| | Sample_submission_date | Aug 17 2011
| | Sample_last_update_date | Dec 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA samples were isolated from individual diencephalons using the TRIzol reagent (Invitrogen, Carlsbad, CA, USA) and cleaned up using the RNeasy Mini Kit with a DNase treatment (Qiagen, Valencia, CA, USA). The RNA quality and quantity were examined by agarose gel electrophoresis and a spectrophotometer.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | One hundred nanograms of total RNA from each sample was reverse-transcribed, amplified and labeled using the GeneChip 3’IVT Express Kit (Affymetrix, Santa Clara, CA, USA) according to the manufacturer’s protocol.
| | Sample_hyb_protocol | Labeled aRNA samples were hybridized to GeneChip Rat Genome 230 2.0 Arrays (Affymetrix). The arrays were washed, stained with the Fluidics Station (Affymetrix).
| | Sample_scan_protocol | Scanned with the GeneChip Scanner (Affymetrix).
| | Sample_data_processing | Data acquisition was performed using the GeneChip Operating Software (Affymetrix) and analyzed using the MAS5 program (Affymetrix).
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Shinji,,Okada
| | Sample_contact_email | asoka@mail.ecc.u-tokyo.ac.jp
| | Sample_contact_phone | +81-3-5841-8118
| | Sample_contact_fax | +81-3-5841-8118
| | Sample_contact_institute | The University of Tokyo
| | Sample_contact_address | 1-1-1 Yayoi
| | Sample_contact_city | Bunkyo-ku, Tokyo
| | Sample_contact_zip/postal_code | 113-8657
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM780nnn/GSM780670/suppl/GSM780670_zr13__Rat230_2_.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM780nnn/GSM780670/suppl/GSM780670_zr13__Rat230_2_._MAS5.mas5.CHP.gz
| | Sample_series_id | GSE31430
| | Sample_data_row_count | 31099
| | |
|
GSM780671 | GPL1355 |
|
ZR15_MAS5
|
diencephalone, zinc-deficiency for 10 days followed by zinc-recovery for 6 days
|
strain: SD rat
Sex: male
treatment: zinc-deficiency for 10 days from 5-wk-old followed by zinc-recovery for 6 days
|
|
| Sample_geo_accession | GSM780671
| | Sample_status | Public on Dec 01 2011
| | Sample_submission_date | Aug 17 2011
| | Sample_last_update_date | Dec 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA samples were isolated from individual diencephalons using the TRIzol reagent (Invitrogen, Carlsbad, CA, USA) and cleaned up using the RNeasy Mini Kit with a DNase treatment (Qiagen, Valencia, CA, USA). The RNA quality and quantity were examined by agarose gel electrophoresis and a spectrophotometer.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | One hundred nanograms of total RNA from each sample was reverse-transcribed, amplified and labeled using the GeneChip 3’IVT Express Kit (Affymetrix, Santa Clara, CA, USA) according to the manufacturer’s protocol.
| | Sample_hyb_protocol | Labeled aRNA samples were hybridized to GeneChip Rat Genome 230 2.0 Arrays (Affymetrix). The arrays were washed, stained with the Fluidics Station (Affymetrix).
| | Sample_scan_protocol | Scanned with the GeneChip Scanner (Affymetrix).
| | Sample_data_processing | Data acquisition was performed using the GeneChip Operating Software (Affymetrix) and analyzed using the MAS5 program (Affymetrix).
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Shinji,,Okada
| | Sample_contact_email | asoka@mail.ecc.u-tokyo.ac.jp
| | Sample_contact_phone | +81-3-5841-8118
| | Sample_contact_fax | +81-3-5841-8118
| | Sample_contact_institute | The University of Tokyo
| | Sample_contact_address | 1-1-1 Yayoi
| | Sample_contact_city | Bunkyo-ku, Tokyo
| | Sample_contact_zip/postal_code | 113-8657
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM780nnn/GSM780671/suppl/GSM780671_zr15__Rat230_2_.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM780nnn/GSM780671/suppl/GSM780671_zr15__Rat230_2_._MAS5.mas5.CHP.gz
| | Sample_series_id | GSE31430
| | Sample_data_row_count | 31099
| | |
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