Search results for the GEO ID: GSE31546 |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM782960 | GPL570 |
|
DB3
|
Lung adenocarcinoma
|
egfr status: Wild-Type
gender: Female
race: White
adjuvant chemo: No
adjuvant rx: No
vital status: Alive
first progression or relapse: No
months to last clinical assessment: 25.2
months to last contact or death: 25.2
smoking history: Smoked in the past
surgical margins: ALL MARGINS PATHOLOGICALLY NEGATIVE
pathologic n stage: N0, ACCORDING TO AJCC CRITERIA
pathologic t stage: T1, ACCORDING TO AJCC CRITERIA
laboratory batch: 12
histologic grade: WELL DIFFERENTIATED
|
|
Sample_geo_accession | GSM782960
| Sample_status | Public on Sep 06 2011
| Sample_submission_date | Aug 19 2011
| Sample_last_update_date | Sep 06 2011
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Single isolates of tumor samples were homogenized in the presence of Trizol reagent and total cellular RNA was purified according to manufacturer’s procedures. RNA samples were further purified using RNeasy spin columns
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA was prepared according to standard Affymetrix protocol from 5 microgram total RNA
| Sample_hyb_protocol | Following fragmentation, 20 microg of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station
| Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A
| Sample_data_processing | Quantile normalization and RMA were done with RMAExpress (http://rmaexpress.bmbolstad.com/)
| Sample_platform_id | GPL570
| Sample_contact_name | Luc,,Girard
| Sample_contact_email | Luc.Girard@UTSouthwestern.edu
| Sample_contact_laboratory | NB8.114A
| Sample_contact_department | Hamon Center for Therapeutic Oncology Research
| Sample_contact_institute | UT Southwestern Medical Center
| Sample_contact_address | 5323 Harry Hines Blvd
| Sample_contact_city | Dallas
| Sample_contact_state | TX
| Sample_contact_zip/postal_code | 75390-8593
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM782nnn/GSM782960/suppl/GSM782960.CEL.gz
| Sample_series_id | GSE31546
| Sample_series_id | GSE31908
| Sample_data_row_count | 54675
| |
|
GSM782961 | GPL570 |
|
DB5
|
Lung adenocarcinoma
|
egfr status: Wild-Type
gender: Female
race: Unknown
adjuvant chemo: No
adjuvant rx: No
vital status: Alive
first progression or relapse: No
months to last clinical assessment: 69.2
months to last contact or death: 69.2
smoking history: Never smoked
surgical margins: ALL MARGINS PATHOLOGICALLY NEGATIVE
pathologic n stage: N0, ACCORDING TO AJCC CRITERIA
pathologic t stage: T1, ACCORDING TO AJCC CRITERIA
laboratory batch: 12
histologic grade: WELL DIFFERENTIATED
|
|
Sample_geo_accession | GSM782961
| Sample_status | Public on Sep 06 2011
| Sample_submission_date | Aug 19 2011
| Sample_last_update_date | Sep 06 2011
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Single isolates of tumor samples were homogenized in the presence of Trizol reagent and total cellular RNA was purified according to manufacturer’s procedures. RNA samples were further purified using RNeasy spin columns
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA was prepared according to standard Affymetrix protocol from 5 microgram total RNA
| Sample_hyb_protocol | Following fragmentation, 20 microg of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station
| Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A
| Sample_data_processing | Quantile normalization and RMA were done with RMAExpress (http://rmaexpress.bmbolstad.com/)
| Sample_platform_id | GPL570
| Sample_contact_name | Luc,,Girard
| Sample_contact_email | Luc.Girard@UTSouthwestern.edu
| Sample_contact_laboratory | NB8.114A
| Sample_contact_department | Hamon Center for Therapeutic Oncology Research
| Sample_contact_institute | UT Southwestern Medical Center
| Sample_contact_address | 5323 Harry Hines Blvd
| Sample_contact_city | Dallas
| Sample_contact_state | TX
| Sample_contact_zip/postal_code | 75390-8593
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM782nnn/GSM782961/suppl/GSM782961.CEL.gz
| Sample_series_id | GSE31546
| Sample_series_id | GSE31908
| Sample_data_row_count | 54675
| |
|
GSM782962 | GPL570 |
|
DB7
|
Lung adenocarcinoma
|
egfr status: Wild-Type
gender: Female
race: White
adjuvant chemo: No
adjuvant rx: No
vital status: Alive
first progression or relapse: Yes
months to first progression: 42.5
months to last clinical assessment: 83
months to last contact or death: 83
smoking history: Smoked in the past
surgical margins: ALL MARGINS PATHOLOGICALLY NEGATIVE
pathologic n stage: N0, ACCORDING TO AJCC CRITERIA
pathologic t stage: T1, ACCORDING TO AJCC CRITERIA
laboratory batch: 12
histologic grade: WELL DIFFERENTIATED
|
|
Sample_geo_accession | GSM782962
| Sample_status | Public on Sep 06 2011
| Sample_submission_date | Aug 19 2011
| Sample_last_update_date | Sep 06 2011
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Single isolates of tumor samples were homogenized in the presence of Trizol reagent and total cellular RNA was purified according to manufacturer’s procedures. RNA samples were further purified using RNeasy spin columns
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA was prepared according to standard Affymetrix protocol from 5 microgram total RNA
| Sample_hyb_protocol | Following fragmentation, 20 microg of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station
| Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A
| Sample_data_processing | Quantile normalization and RMA were done with RMAExpress (http://rmaexpress.bmbolstad.com/)
| Sample_platform_id | GPL570
| Sample_contact_name | Luc,,Girard
| Sample_contact_email | Luc.Girard@UTSouthwestern.edu
| Sample_contact_laboratory | NB8.114A
| Sample_contact_department | Hamon Center for Therapeutic Oncology Research
| Sample_contact_institute | UT Southwestern Medical Center
| Sample_contact_address | 5323 Harry Hines Blvd
| Sample_contact_city | Dallas
| Sample_contact_state | TX
| Sample_contact_zip/postal_code | 75390-8593
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM782nnn/GSM782962/suppl/GSM782962.CEL.gz
| Sample_series_id | GSE31546
| Sample_series_id | GSE31908
| Sample_data_row_count | 54675
| |
|
GSM782963 | GPL570 |
|
DB8
|
Lung adenocarcinoma
|
egfr status: Wild-Type
gender: Female
race: White
adjuvant chemo: No
adjuvant rx: No
vital status: Alive
first progression or relapse: Yes
months to first progression: 30
months to last clinical assessment: 69.2
months to last contact or death: 69.2
smoking history: Smoked in the past
surgical margins: ALL MARGINS PATHOLOGICALLY NEGATIVE
pathologic n stage: N0, ACCORDING TO AJCC CRITERIA
pathologic t stage: T1, ACCORDING TO AJCC CRITERIA
laboratory batch: 12
histologic grade: WELL DIFFERENTIATED
|
|
Sample_geo_accession | GSM782963
| Sample_status | Public on Sep 06 2011
| Sample_submission_date | Aug 19 2011
| Sample_last_update_date | Sep 06 2011
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Single isolates of tumor samples were homogenized in the presence of Trizol reagent and total cellular RNA was purified according to manufacturer’s procedures. RNA samples were further purified using RNeasy spin columns
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA was prepared according to standard Affymetrix protocol from 5 microgram total RNA
| Sample_hyb_protocol | Following fragmentation, 20 microg of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station
| Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A
| Sample_data_processing | Quantile normalization and RMA were done with RMAExpress (http://rmaexpress.bmbolstad.com/)
| Sample_platform_id | GPL570
| Sample_contact_name | Luc,,Girard
| Sample_contact_email | Luc.Girard@UTSouthwestern.edu
| Sample_contact_laboratory | NB8.114A
| Sample_contact_department | Hamon Center for Therapeutic Oncology Research
| Sample_contact_institute | UT Southwestern Medical Center
| Sample_contact_address | 5323 Harry Hines Blvd
| Sample_contact_city | Dallas
| Sample_contact_state | TX
| Sample_contact_zip/postal_code | 75390-8593
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM782nnn/GSM782963/suppl/GSM782963.CEL.gz
| Sample_series_id | GSE31546
| Sample_series_id | GSE31908
| Sample_data_row_count | 54675
| |
|
GSM782964 | GPL570 |
|
DB10
|
Lung adenocarcinoma
|
egfr status: Wild-Type
gender: Female
race: White
adjuvant chemo: No
adjuvant rx: No
vital status: Alive
first progression or relapse: Yes
months to first progression: 3
months to last clinical assessment: 27.1
months to last contact or death: 27.1
smoking history: Smoked in the past
surgical margins: ALL MARGINS PATHOLOGICALLY NEGATIVE
pathologic n stage: N0, ACCORDING TO AJCC CRITERIA
pathologic t stage: T1, ACCORDING TO AJCC CRITERIA
laboratory batch: 12
histologic grade: WELL DIFFERENTIATED
|
|
Sample_geo_accession | GSM782964
| Sample_status | Public on Sep 06 2011
| Sample_submission_date | Aug 19 2011
| Sample_last_update_date | Sep 06 2011
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Single isolates of tumor samples were homogenized in the presence of Trizol reagent and total cellular RNA was purified according to manufacturer’s procedures. RNA samples were further purified using RNeasy spin columns
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA was prepared according to standard Affymetrix protocol from 5 microgram total RNA
| Sample_hyb_protocol | Following fragmentation, 20 microg of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station
| Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A
| Sample_data_processing | Quantile normalization and RMA were done with RMAExpress (http://rmaexpress.bmbolstad.com/)
| Sample_platform_id | GPL570
| Sample_contact_name | Luc,,Girard
| Sample_contact_email | Luc.Girard@UTSouthwestern.edu
| Sample_contact_laboratory | NB8.114A
| Sample_contact_department | Hamon Center for Therapeutic Oncology Research
| Sample_contact_institute | UT Southwestern Medical Center
| Sample_contact_address | 5323 Harry Hines Blvd
| Sample_contact_city | Dallas
| Sample_contact_state | TX
| Sample_contact_zip/postal_code | 75390-8593
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM782nnn/GSM782964/suppl/GSM782964.CEL.gz
| Sample_series_id | GSE31546
| Sample_series_id | GSE31908
| Sample_data_row_count | 54675
| |
|
GSM782965 | GPL570 |
|
DB17
|
Lung adenocarcinoma
|
egfr status: Mutant
gender: Female
race: Asian
adjuvant chemo: Yes
adjuvant rx: Yes
vital status: Alive
first progression or relapse: Yes
months to first progression: 9
months to last clinical assessment: 66.6
months to last contact or death: 66.6
smoking history: Never smoked
surgical margins: ALL MARGINS PATHOLOGICALLY NEGATIVE
pathologic n stage: N0, ACCORDING TO AJCC CRITERIA
pathologic t stage: T2, ACCORDING TO AJCC CRITERIA
laboratory batch: 13
histologic grade: Moderate Differentiation
|
|
Sample_geo_accession | GSM782965
| Sample_status | Public on Sep 06 2011
| Sample_submission_date | Aug 19 2011
| Sample_last_update_date | Sep 06 2011
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Single isolates of tumor samples were homogenized in the presence of Trizol reagent and total cellular RNA was purified according to manufacturer’s procedures. RNA samples were further purified using RNeasy spin columns
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA was prepared according to standard Affymetrix protocol from 5 microgram total RNA
| Sample_hyb_protocol | Following fragmentation, 20 microg of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station
| Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A
| Sample_data_processing | Quantile normalization and RMA were done with RMAExpress (http://rmaexpress.bmbolstad.com/)
| Sample_platform_id | GPL570
| Sample_contact_name | Luc,,Girard
| Sample_contact_email | Luc.Girard@UTSouthwestern.edu
| Sample_contact_laboratory | NB8.114A
| Sample_contact_department | Hamon Center for Therapeutic Oncology Research
| Sample_contact_institute | UT Southwestern Medical Center
| Sample_contact_address | 5323 Harry Hines Blvd
| Sample_contact_city | Dallas
| Sample_contact_state | TX
| Sample_contact_zip/postal_code | 75390-8593
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM782nnn/GSM782965/suppl/GSM782965.CEL.gz
| Sample_series_id | GSE31546
| Sample_series_id | GSE31908
| Sample_data_row_count | 54675
| |
|
GSM782966 | GPL570 |
|
DB22
|
Lung adenocarcinoma
|
egfr status: Mutant
gender: Female
race: White
adjuvant chemo: No
adjuvant rx: No
vital status: Dead
first progression or relapse: Yes
months to last clinical assessment: 128.8
months to last contact or death: 128.8
smoking history: Smoked in the past
surgical margins: ALL MARGINS PATHOLOGICALLY NEGATIVE
pathologic n stage: N0, ACCORDING TO AJCC CRITERIA
pathologic t stage: T1, ACCORDING TO AJCC CRITERIA
laboratory batch: 14
histologic grade: Moderate Differentiation
|
|
Sample_geo_accession | GSM782966
| Sample_status | Public on Sep 06 2011
| Sample_submission_date | Aug 19 2011
| Sample_last_update_date | Sep 06 2011
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Single isolates of tumor samples were homogenized in the presence of Trizol reagent and total cellular RNA was purified according to manufacturer’s procedures. RNA samples were further purified using RNeasy spin columns
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA was prepared according to standard Affymetrix protocol from 5 microgram total RNA
| Sample_hyb_protocol | Following fragmentation, 20 microg of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station
| Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A
| Sample_data_processing | Quantile normalization and RMA were done with RMAExpress (http://rmaexpress.bmbolstad.com/)
| Sample_platform_id | GPL570
| Sample_contact_name | Luc,,Girard
| Sample_contact_email | Luc.Girard@UTSouthwestern.edu
| Sample_contact_laboratory | NB8.114A
| Sample_contact_department | Hamon Center for Therapeutic Oncology Research
| Sample_contact_institute | UT Southwestern Medical Center
| Sample_contact_address | 5323 Harry Hines Blvd
| Sample_contact_city | Dallas
| Sample_contact_state | TX
| Sample_contact_zip/postal_code | 75390-8593
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM782nnn/GSM782966/suppl/GSM782966.CEL.gz
| Sample_series_id | GSE31546
| Sample_series_id | GSE31908
| Sample_data_row_count | 54675
| |
|
GSM782967 | GPL570 |
|
DB35
|
Lung adenocarcinoma
|
egfr status: Wild-Type
gender: Male
race: White
adjuvant chemo: No
adjuvant rx: No
vital status: Alive
first progression or relapse: No
months to last clinical assessment: 62
months to last contact or death: 62
smoking history: Smoked in the past
surgical margins: ALL MARGINS PATHOLOGICALLY NEGATIVE
pathologic n stage: N0, ACCORDING TO AJCC CRITERIA
pathologic t stage: T2, ACCORDING TO AJCC CRITERIA
laboratory batch: 15
histologic grade: Moderate Differentiation
|
|
Sample_geo_accession | GSM782967
| Sample_status | Public on Sep 06 2011
| Sample_submission_date | Aug 19 2011
| Sample_last_update_date | Sep 06 2011
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Single isolates of tumor samples were homogenized in the presence of Trizol reagent and total cellular RNA was purified according to manufacturer’s procedures. RNA samples were further purified using RNeasy spin columns
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA was prepared according to standard Affymetrix protocol from 5 microgram total RNA
| Sample_hyb_protocol | Following fragmentation, 20 microg of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station
| Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A
| Sample_data_processing | Quantile normalization and RMA were done with RMAExpress (http://rmaexpress.bmbolstad.com/)
| Sample_platform_id | GPL570
| Sample_contact_name | Luc,,Girard
| Sample_contact_email | Luc.Girard@UTSouthwestern.edu
| Sample_contact_laboratory | NB8.114A
| Sample_contact_department | Hamon Center for Therapeutic Oncology Research
| Sample_contact_institute | UT Southwestern Medical Center
| Sample_contact_address | 5323 Harry Hines Blvd
| Sample_contact_city | Dallas
| Sample_contact_state | TX
| Sample_contact_zip/postal_code | 75390-8593
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM782nnn/GSM782967/suppl/GSM782967.CEL.gz
| Sample_series_id | GSE31546
| Sample_series_id | GSE31908
| Sample_data_row_count | 54675
| |
|
GSM782968 | GPL570 |
|
DB45
|
Lung adenocarcinoma
|
egfr status: Mutant
gender: Female
race: White
adjuvant chemo: No
adjuvant rx: No
vital status: Alive
first progression or relapse: No
months to last clinical assessment: 52.1
months to last contact or death: 52.1
smoking history: Smoked in the past
surgical margins: ALL MARGINS PATHOLOGICALLY NEGATIVE
pathologic n stage: N0, ACCORDING TO AJCC CRITERIA
pathologic t stage: T1, ACCORDING TO AJCC CRITERIA
laboratory batch: 16
histologic grade: WELL DIFFERENTIATED
|
|
Sample_geo_accession | GSM782968
| Sample_status | Public on Sep 06 2011
| Sample_submission_date | Aug 19 2011
| Sample_last_update_date | Sep 06 2011
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Single isolates of tumor samples were homogenized in the presence of Trizol reagent and total cellular RNA was purified according to manufacturer’s procedures. RNA samples were further purified using RNeasy spin columns
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA was prepared according to standard Affymetrix protocol from 5 microgram total RNA
| Sample_hyb_protocol | Following fragmentation, 20 microg of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station
| Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A
| Sample_data_processing | Quantile normalization and RMA were done with RMAExpress (http://rmaexpress.bmbolstad.com/)
| Sample_platform_id | GPL570
| Sample_contact_name | Luc,,Girard
| Sample_contact_email | Luc.Girard@UTSouthwestern.edu
| Sample_contact_laboratory | NB8.114A
| Sample_contact_department | Hamon Center for Therapeutic Oncology Research
| Sample_contact_institute | UT Southwestern Medical Center
| Sample_contact_address | 5323 Harry Hines Blvd
| Sample_contact_city | Dallas
| Sample_contact_state | TX
| Sample_contact_zip/postal_code | 75390-8593
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM782nnn/GSM782968/suppl/GSM782968.CEL.gz
| Sample_series_id | GSE31546
| Sample_series_id | GSE31908
| Sample_data_row_count | 54675
| |
|
GSM782969 | GPL570 |
|
DB48
|
Lung adenocarcinoma
|
egfr status: Mutant
gender: Female
race: White
adjuvant chemo: No
adjuvant rx: No
vital status: Alive
first progression or relapse: No
months to last clinical assessment: 86.8
months to last contact or death: 86.8
smoking history: Smoked in the past
surgical margins: ALL MARGINS PATHOLOGICALLY NEGATIVE
pathologic n stage: N0, ACCORDING TO AJCC CRITERIA
pathologic t stage: T1, ACCORDING TO AJCC CRITERIA
laboratory batch: 16
histologic grade: WELL DIFFERENTIATED
|
|
Sample_geo_accession | GSM782969
| Sample_status | Public on Sep 06 2011
| Sample_submission_date | Aug 19 2011
| Sample_last_update_date | Sep 06 2011
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Single isolates of tumor samples were homogenized in the presence of Trizol reagent and total cellular RNA was purified according to manufacturer’s procedures. RNA samples were further purified using RNeasy spin columns
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA was prepared according to standard Affymetrix protocol from 5 microgram total RNA
| Sample_hyb_protocol | Following fragmentation, 20 microg of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station
| Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A
| Sample_data_processing | Quantile normalization and RMA were done with RMAExpress (http://rmaexpress.bmbolstad.com/)
| Sample_platform_id | GPL570
| Sample_contact_name | Luc,,Girard
| Sample_contact_email | Luc.Girard@UTSouthwestern.edu
| Sample_contact_laboratory | NB8.114A
| Sample_contact_department | Hamon Center for Therapeutic Oncology Research
| Sample_contact_institute | UT Southwestern Medical Center
| Sample_contact_address | 5323 Harry Hines Blvd
| Sample_contact_city | Dallas
| Sample_contact_state | TX
| Sample_contact_zip/postal_code | 75390-8593
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM782nnn/GSM782969/suppl/GSM782969.CEL.gz
| Sample_series_id | GSE31546
| Sample_series_id | GSE31908
| Sample_data_row_count | 54675
| |
|
GSM782970 | GPL570 |
|
DB49
|
Lung adenocarcinoma
|
egfr status: Mutant
gender: Male
race: Unknown
adjuvant chemo: No
adjuvant rx: No
vital status: Alive
first progression or relapse: Yes
months to first progression: 102
months to last clinical assessment: 103.4
months to last contact or death: 103.4
smoking history: Smoked in the past
surgical margins: ALL MARGINS PATHOLOGICALLY NEGATIVE
pathologic n stage: N0, ACCORDING TO AJCC CRITERIA
pathologic t stage: T2, ACCORDING TO AJCC CRITERIA
laboratory batch: 16
histologic grade: Moderate Differentiation
|
|
Sample_geo_accession | GSM782970
| Sample_status | Public on Sep 06 2011
| Sample_submission_date | Aug 19 2011
| Sample_last_update_date | Sep 06 2011
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Single isolates of tumor samples were homogenized in the presence of Trizol reagent and total cellular RNA was purified according to manufacturer’s procedures. RNA samples were further purified using RNeasy spin columns
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA was prepared according to standard Affymetrix protocol from 5 microgram total RNA
| Sample_hyb_protocol | Following fragmentation, 20 microg of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station
| Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A
| Sample_data_processing | Quantile normalization and RMA were done with RMAExpress (http://rmaexpress.bmbolstad.com/)
| Sample_platform_id | GPL570
| Sample_contact_name | Luc,,Girard
| Sample_contact_email | Luc.Girard@UTSouthwestern.edu
| Sample_contact_laboratory | NB8.114A
| Sample_contact_department | Hamon Center for Therapeutic Oncology Research
| Sample_contact_institute | UT Southwestern Medical Center
| Sample_contact_address | 5323 Harry Hines Blvd
| Sample_contact_city | Dallas
| Sample_contact_state | TX
| Sample_contact_zip/postal_code | 75390-8593
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM782nnn/GSM782970/suppl/GSM782970.CEL.gz
| Sample_series_id | GSE31546
| Sample_series_id | GSE31908
| Sample_data_row_count | 54675
| |
|
GSM782971 | GPL570 |
|
DB56
|
Lung adenocarcinoma
|
egfr status: Wild-Type
gender: Female
race: White
adjuvant chemo: No
adjuvant rx: No
vital status: Alive
first progression or relapse: No
months to last clinical assessment: 162.6
months to last contact or death: 162.6
smoking history: Smoked in the past
surgical margins: ALL MARGINS PATHOLOGICALLY NEGATIVE
pathologic n stage: N0, ACCORDING TO AJCC CRITERIA
pathologic t stage: T1, ACCORDING TO AJCC CRITERIA
laboratory batch: 16
histologic grade: WELL DIFFERENTIATED
|
|
Sample_geo_accession | GSM782971
| Sample_status | Public on Sep 06 2011
| Sample_submission_date | Aug 19 2011
| Sample_last_update_date | Sep 06 2011
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Single isolates of tumor samples were homogenized in the presence of Trizol reagent and total cellular RNA was purified according to manufacturer’s procedures. RNA samples were further purified using RNeasy spin columns
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA was prepared according to standard Affymetrix protocol from 5 microgram total RNA
| Sample_hyb_protocol | Following fragmentation, 20 microg of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station
| Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A
| Sample_data_processing | Quantile normalization and RMA were done with RMAExpress (http://rmaexpress.bmbolstad.com/)
| Sample_platform_id | GPL570
| Sample_contact_name | Luc,,Girard
| Sample_contact_email | Luc.Girard@UTSouthwestern.edu
| Sample_contact_laboratory | NB8.114A
| Sample_contact_department | Hamon Center for Therapeutic Oncology Research
| Sample_contact_institute | UT Southwestern Medical Center
| Sample_contact_address | 5323 Harry Hines Blvd
| Sample_contact_city | Dallas
| Sample_contact_state | TX
| Sample_contact_zip/postal_code | 75390-8593
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM782nnn/GSM782971/suppl/GSM782971.CEL.gz
| Sample_series_id | GSE31546
| Sample_series_id | GSE31908
| Sample_data_row_count | 54675
| |
|
GSM782972 | GPL570 |
|
DB68
|
Lung adenocarcinoma
|
egfr status: Wild-Type
gender: Male
race: White
adjuvant chemo: No
adjuvant rx: No
vital status: Alive
first progression or relapse: No
months to last clinical assessment: 101.2
months to last contact or death: 101.2
smoking history: Smoked in the past
surgical margins: ALL MARGINS PATHOLOGICALLY NEGATIVE
pathologic n stage: N0, ACCORDING TO AJCC CRITERIA
pathologic t stage: T2, ACCORDING TO AJCC CRITERIA
laboratory batch: 17
histologic grade: Moderate Differentiation
|
|
Sample_geo_accession | GSM782972
| Sample_status | Public on Sep 06 2011
| Sample_submission_date | Aug 19 2011
| Sample_last_update_date | Sep 06 2011
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Single isolates of tumor samples were homogenized in the presence of Trizol reagent and total cellular RNA was purified according to manufacturer’s procedures. RNA samples were further purified using RNeasy spin columns
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA was prepared according to standard Affymetrix protocol from 5 microgram total RNA
| Sample_hyb_protocol | Following fragmentation, 20 microg of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station
| Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A
| Sample_data_processing | Quantile normalization and RMA were done with RMAExpress (http://rmaexpress.bmbolstad.com/)
| Sample_platform_id | GPL570
| Sample_contact_name | Luc,,Girard
| Sample_contact_email | Luc.Girard@UTSouthwestern.edu
| Sample_contact_laboratory | NB8.114A
| Sample_contact_department | Hamon Center for Therapeutic Oncology Research
| Sample_contact_institute | UT Southwestern Medical Center
| Sample_contact_address | 5323 Harry Hines Blvd
| Sample_contact_city | Dallas
| Sample_contact_state | TX
| Sample_contact_zip/postal_code | 75390-8593
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM782nnn/GSM782972/suppl/GSM782972.CEL.gz
| Sample_series_id | GSE31546
| Sample_series_id | GSE31908
| Sample_data_row_count | 54675
| |
|
GSM782973 | GPL570 |
|
DB80
|
Lung adenocarcinoma
|
egfr status: Mutant
gender: Female
race: Not Reported
adjuvant chemo: Yes
adjuvant rx: Yes
vital status: Alive
first progression or relapse: No
months to last clinical assessment: 32.9
months to last contact or death: 32.9
smoking history: Never smoked
surgical margins: ALL MARGINS PATHOLOGICALLY NEGATIVE
pathologic n stage: N1, ACCORDING TO AJCC CRITERIA
pathologic t stage: T2, ACCORDING TO AJCC CRITERIA
laboratory batch: 18
histologic grade: Moderate Differentiation
|
|
Sample_geo_accession | GSM782973
| Sample_status | Public on Sep 06 2011
| Sample_submission_date | Aug 19 2011
| Sample_last_update_date | Sep 06 2011
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Single isolates of tumor samples were homogenized in the presence of Trizol reagent and total cellular RNA was purified according to manufacturer’s procedures. RNA samples were further purified using RNeasy spin columns
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA was prepared according to standard Affymetrix protocol from 5 microgram total RNA
| Sample_hyb_protocol | Following fragmentation, 20 microg of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station
| Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A
| Sample_data_processing | Quantile normalization and RMA were done with RMAExpress (http://rmaexpress.bmbolstad.com/)
| Sample_platform_id | GPL570
| Sample_contact_name | Luc,,Girard
| Sample_contact_email | Luc.Girard@UTSouthwestern.edu
| Sample_contact_laboratory | NB8.114A
| Sample_contact_department | Hamon Center for Therapeutic Oncology Research
| Sample_contact_institute | UT Southwestern Medical Center
| Sample_contact_address | 5323 Harry Hines Blvd
| Sample_contact_city | Dallas
| Sample_contact_state | TX
| Sample_contact_zip/postal_code | 75390-8593
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM782nnn/GSM782973/suppl/GSM782973.CEL.gz
| Sample_series_id | GSE31546
| Sample_series_id | GSE31908
| Sample_data_row_count | 54675
| |
|
GSM782974 | GPL570 |
|
DB82
|
Lung adenocarcinoma
|
egfr status: Mutant
gender: Female
race: Not Reported
adjuvant chemo: Yes
adjuvant rx: Yes
vital status: Dead
first progression or relapse: Yes
months to first progression: 27
months to last clinical assessment: 54.2
months to last contact or death: 54.2
smoking history: Never smoked
surgical margins: ALL MARGINS PATHOLOGICALLY NEGATIVE
pathologic n stage: N0, ACCORDING TO AJCC CRITERIA
pathologic t stage: T1, ACCORDING TO AJCC CRITERIA
laboratory batch: 18
histologic grade: Moderate Differentiation
|
|
Sample_geo_accession | GSM782974
| Sample_status | Public on Sep 06 2011
| Sample_submission_date | Aug 19 2011
| Sample_last_update_date | Sep 06 2011
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Single isolates of tumor samples were homogenized in the presence of Trizol reagent and total cellular RNA was purified according to manufacturer’s procedures. RNA samples were further purified using RNeasy spin columns
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA was prepared according to standard Affymetrix protocol from 5 microgram total RNA
| Sample_hyb_protocol | Following fragmentation, 20 microg of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station
| Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A
| Sample_data_processing | Quantile normalization and RMA were done with RMAExpress (http://rmaexpress.bmbolstad.com/)
| Sample_platform_id | GPL570
| Sample_contact_name | Luc,,Girard
| Sample_contact_email | Luc.Girard@UTSouthwestern.edu
| Sample_contact_laboratory | NB8.114A
| Sample_contact_department | Hamon Center for Therapeutic Oncology Research
| Sample_contact_institute | UT Southwestern Medical Center
| Sample_contact_address | 5323 Harry Hines Blvd
| Sample_contact_city | Dallas
| Sample_contact_state | TX
| Sample_contact_zip/postal_code | 75390-8593
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM782nnn/GSM782974/suppl/GSM782974.CEL.gz
| Sample_series_id | GSE31546
| Sample_series_id | GSE31908
| Sample_data_row_count | 54675
| |
|
GSM782975 | GPL570 |
|
DB84
|
Lung adenocarcinoma
|
egfr status: Mutant
gender: Female
race: White
adjuvant chemo: No
adjuvant rx: No
vital status: Alive
first progression or relapse: Yes
months to first progression: 10
months to last clinical assessment: 53.2
months to last contact or death: 53.2
smoking history: Smoked in the past
surgical margins: ALL MARGINS PATHOLOGICALLY NEGATIVE
pathologic n stage: N0, ACCORDING TO AJCC CRITERIA
pathologic t stage: T1, ACCORDING TO AJCC CRITERIA
laboratory batch: 18
histologic grade: Moderate Differentiation
|
|
Sample_geo_accession | GSM782975
| Sample_status | Public on Sep 06 2011
| Sample_submission_date | Aug 19 2011
| Sample_last_update_date | Sep 06 2011
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Single isolates of tumor samples were homogenized in the presence of Trizol reagent and total cellular RNA was purified according to manufacturer’s procedures. RNA samples were further purified using RNeasy spin columns
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA was prepared according to standard Affymetrix protocol from 5 microgram total RNA
| Sample_hyb_protocol | Following fragmentation, 20 microg of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station
| Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A
| Sample_data_processing | Quantile normalization and RMA were done with RMAExpress (http://rmaexpress.bmbolstad.com/)
| Sample_platform_id | GPL570
| Sample_contact_name | Luc,,Girard
| Sample_contact_email | Luc.Girard@UTSouthwestern.edu
| Sample_contact_laboratory | NB8.114A
| Sample_contact_department | Hamon Center for Therapeutic Oncology Research
| Sample_contact_institute | UT Southwestern Medical Center
| Sample_contact_address | 5323 Harry Hines Blvd
| Sample_contact_city | Dallas
| Sample_contact_state | TX
| Sample_contact_zip/postal_code | 75390-8593
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM782nnn/GSM782975/suppl/GSM782975.CEL.gz
| Sample_series_id | GSE31546
| Sample_series_id | GSE31908
| Sample_data_row_count | 54675
| |
|
GSM782976 | GPL570 |
|
DB94
|
Lung adenocarcinoma
|
egfr status: Wild-Type
gender: Female
Sex: F
|
|
Sample_geo_accession | GSM782976
| Sample_status | Public on Sep 06 2011
| Sample_submission_date | Aug 19 2011
| Sample_last_update_date | Sep 06 2011
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Single isolates of tumor samples were homogenized in the presence of Trizol reagent and total cellular RNA was purified according to manufacturer’s procedures. RNA samples were further purified using RNeasy spin columns
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA was prepared according to standard Affymetrix protocol from 5 microgram total RNA
| Sample_hyb_protocol | Following fragmentation, 20 microg of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station
| Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A
| Sample_data_processing | Quantile normalization and RMA were done with RMAExpress (http://rmaexpress.bmbolstad.com/)
| Sample_platform_id | GPL570
| Sample_contact_name | Luc,,Girard
| Sample_contact_email | Luc.Girard@UTSouthwestern.edu
| Sample_contact_laboratory | NB8.114A
| Sample_contact_department | Hamon Center for Therapeutic Oncology Research
| Sample_contact_institute | UT Southwestern Medical Center
| Sample_contact_address | 5323 Harry Hines Blvd
| Sample_contact_city | Dallas
| Sample_contact_state | TX
| Sample_contact_zip/postal_code | 75390-8593
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM782nnn/GSM782976/suppl/GSM782976.CEL.gz
| Sample_series_id | GSE31546
| Sample_series_id | GSE31908
| Sample_data_row_count | 54675
| |
|
|
|
Make groups for comparisons |
(2 groups will be compared at a time) |
|
Select GSMs and click on "Add groups" |
Enter the group name here: |
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