Search results for the GEO ID: GSE31548  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM783029 | GPL97 |
|
3L(B)
|
Lung adenocarcinoma
|
egfr status: Wild-type
age: 70
race: WNH
Sex: F
smoking: Former
who histologic subtype: BAC (M, NM)
who grade: WD
mskcc histology: PBAC
surgdte/tb_date: 1999-01-13
pack yrs: 20
time quit (@ initial consult): >10yrs
tumorsite: LtLungTumor
pt: 1
pn: 0
pm: 0
grpstage: 1A
death_ind: A
status: NED
last f/u: 2002-12-10
intstat: 47
|
|
| Sample_geo_accession | GSM783029
| | Sample_status | Public on Sep 06 2011
| | Sample_submission_date | Aug 19 2011
| | Sample_last_update_date | Sep 06 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared according to standard Affymetrix protocol from 5 microgram total RNA
| | Sample_hyb_protocol | Following fragmentation, 20 microg of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A
| | Sample_data_processing | Quantile normalization and RMA were done with RMAExpress (http://rmaexpress.bmbolstad.com/)
| | Sample_platform_id | GPL97
| | Sample_contact_name | Luc,,Girard
| | Sample_contact_email | Luc.Girard@UTSouthwestern.edu
| | Sample_contact_laboratory | NB8.114A
| | Sample_contact_department | Hamon Center for Therapeutic Oncology Research
| | Sample_contact_institute | UT Southwestern Medical Center
| | Sample_contact_address | 5323 Harry Hines Blvd
| | Sample_contact_city | Dallas
| | Sample_contact_state | TX
| | Sample_contact_zip/postal_code | 75390-8593
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM783nnn/GSM783029/suppl/GSM783029.CEL.gz
| | Sample_series_id | GSE31548
| | Sample_series_id | GSE31908
| | Sample_data_row_count | 22645
| | |
|
GSM783030 | GPL97 |
|
8L(B)
|
Lung adenocarcinoma
|
egfr status: Wild-type
age: 65
race: WNH
Sex: F
smoking: Former
who histologic subtype: BAC, ACI
who grade: WD
mskcc histology: BWFI
surgdte/tb_date: 2000-06-29
pack yrs: 34.5
time quit (@ initial consult): >10yrs
tumorsite: RtLungTumor
pt: 1
pn: 0
pm: 0
grpstage: 1A
death_ind: A
status: NED
last f/u: 2003-09-10
intstat: 39
|
|
| Sample_geo_accession | GSM783030
| | Sample_status | Public on Sep 06 2011
| | Sample_submission_date | Aug 19 2011
| | Sample_last_update_date | Sep 06 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared according to standard Affymetrix protocol from 5 microgram total RNA
| | Sample_hyb_protocol | Following fragmentation, 20 microg of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A
| | Sample_data_processing | Quantile normalization and RMA were done with RMAExpress (http://rmaexpress.bmbolstad.com/)
| | Sample_platform_id | GPL97
| | Sample_contact_name | Luc,,Girard
| | Sample_contact_email | Luc.Girard@UTSouthwestern.edu
| | Sample_contact_laboratory | NB8.114A
| | Sample_contact_department | Hamon Center for Therapeutic Oncology Research
| | Sample_contact_institute | UT Southwestern Medical Center
| | Sample_contact_address | 5323 Harry Hines Blvd
| | Sample_contact_city | Dallas
| | Sample_contact_state | TX
| | Sample_contact_zip/postal_code | 75390-8593
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM783nnn/GSM783030/suppl/GSM783030.CEL.gz
| | Sample_series_id | GSE31548
| | Sample_series_id | GSE31908
| | Sample_data_row_count | 22645
| | |
|
GSM783031 | GPL97 |
|
15L(B)
|
Lung adenocarcinoma
|
egfr status: Mutant
age: 48
race: WNH
Sex: F
smoking: UNK
who histologic subtype: PAP, BAC
who grade: MD
mskcc histology: AWBF
surgdte/tb_date: 1991-09-03
pack yrs: UNK
other: Not available
tumorsite: ® Upper Lobe
pt: 2
pn: 1
pm: 0
grpstage: 2
rectype1: ® Pleura, ® Hemidiaphragm
recdte1: 33715
intrec1: 7
death_ind: D
deathdte: 34123
status: DOD
last f/u: 1993-06-03
intstat: 21
|
|
| Sample_geo_accession | GSM783031
| | Sample_status | Public on Sep 06 2011
| | Sample_submission_date | Aug 19 2011
| | Sample_last_update_date | Sep 06 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared according to standard Affymetrix protocol from 5 microgram total RNA
| | Sample_hyb_protocol | Following fragmentation, 20 microg of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A
| | Sample_data_processing | Quantile normalization and RMA were done with RMAExpress (http://rmaexpress.bmbolstad.com/)
| | Sample_platform_id | GPL97
| | Sample_contact_name | Luc,,Girard
| | Sample_contact_email | Luc.Girard@UTSouthwestern.edu
| | Sample_contact_laboratory | NB8.114A
| | Sample_contact_department | Hamon Center for Therapeutic Oncology Research
| | Sample_contact_institute | UT Southwestern Medical Center
| | Sample_contact_address | 5323 Harry Hines Blvd
| | Sample_contact_city | Dallas
| | Sample_contact_state | TX
| | Sample_contact_zip/postal_code | 75390-8593
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM783nnn/GSM783031/suppl/GSM783031.CEL.gz
| | Sample_series_id | GSE31548
| | Sample_series_id | GSE31908
| | Sample_data_row_count | 22645
| | |
|
GSM783032 | GPL97 |
|
18L(B)
|
Lung adenocarcinoma
|
egfr status: Wild-type
age: 68
race: WNH
Sex: M
smoking: Former
who histologic subtype: BAC, ACI
who grade: MD
mskcc histology: BWFI
surgdte/tb_date: 1999-03-09
pack yrs: 80
time quit (@ initial consult): 6-10yrs
tumorsite: RtLungTumor
pt: 2
pn: 0
pm: 0
grpstage: 1B
rectype1: Lt. Adrenal
recdte1: 37347
intrec1: 37
death_ind: A
status: AWD
last f/u: 2003-03-05
intstat: 48
|
|
| Sample_geo_accession | GSM783032
| | Sample_status | Public on Sep 06 2011
| | Sample_submission_date | Aug 19 2011
| | Sample_last_update_date | Sep 06 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared according to standard Affymetrix protocol from 5 microgram total RNA
| | Sample_hyb_protocol | Following fragmentation, 20 microg of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A
| | Sample_data_processing | Quantile normalization and RMA were done with RMAExpress (http://rmaexpress.bmbolstad.com/)
| | Sample_platform_id | GPL97
| | Sample_contact_name | Luc,,Girard
| | Sample_contact_email | Luc.Girard@UTSouthwestern.edu
| | Sample_contact_laboratory | NB8.114A
| | Sample_contact_department | Hamon Center for Therapeutic Oncology Research
| | Sample_contact_institute | UT Southwestern Medical Center
| | Sample_contact_address | 5323 Harry Hines Blvd
| | Sample_contact_city | Dallas
| | Sample_contact_state | TX
| | Sample_contact_zip/postal_code | 75390-8593
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM783nnn/GSM783032/suppl/GSM783032.CEL.gz
| | Sample_series_id | GSE31548
| | Sample_series_id | GSE31908
| | Sample_data_row_count | 22645
| | |
|
GSM783033 | GPL97 |
|
21L(B)
|
Lung adenocarcinoma
|
egfr status: Wild-type
age: 52
race: WNH
Sex: F
smoking: Current
who histologic subtype: ACI, SOL
who grade: MD, PD
mskcc histology: ACA
surgdte/tb_date: 1999-07-19
pack yrs: 52.5
time quit (@ initial consult): 0
other: Quit by OR
tumorsite: LtLungTumor
pt: 2
pn: 2
pm: 0
grpstage: 3A
rectype1: Adrenal
recdte1: 36594
intrec1: 8
death_ind: D
deathdte: 36797
status: DOD
last f/u: 2000-09-28
intstat: 14
|
|
| Sample_geo_accession | GSM783033
| | Sample_status | Public on Sep 06 2011
| | Sample_submission_date | Aug 19 2011
| | Sample_last_update_date | Sep 06 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared according to standard Affymetrix protocol from 5 microgram total RNA
| | Sample_hyb_protocol | Following fragmentation, 20 microg of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A
| | Sample_data_processing | Quantile normalization and RMA were done with RMAExpress (http://rmaexpress.bmbolstad.com/)
| | Sample_platform_id | GPL97
| | Sample_contact_name | Luc,,Girard
| | Sample_contact_email | Luc.Girard@UTSouthwestern.edu
| | Sample_contact_laboratory | NB8.114A
| | Sample_contact_department | Hamon Center for Therapeutic Oncology Research
| | Sample_contact_institute | UT Southwestern Medical Center
| | Sample_contact_address | 5323 Harry Hines Blvd
| | Sample_contact_city | Dallas
| | Sample_contact_state | TX
| | Sample_contact_zip/postal_code | 75390-8593
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM783nnn/GSM783033/suppl/GSM783033.CEL.gz
| | Sample_series_id | GSE31548
| | Sample_series_id | GSE31908
| | Sample_data_row_count | 22645
| | |
|
GSM783034 | GPL97 |
|
22L(B)
|
Lung adenocarcinoma
|
egfr status: Wild-type
age: 62
race: WNH
Sex: M
smoking: Former
who histologic subtype: BAC, ACI
who grade: MD
mskcc histology: BWFI
surgdte/tb_date: 1997-05-20
pack yrs: 20
time quit (@ initial consult): 6-10yrs
tumorsite: RtLungTumor
pt: 2
pn: 0
pm: 0
grpstage: 1B
death_ind: A
status: NED
last f/u: 2000-02-03
intstat: 33
|
|
| Sample_geo_accession | GSM783034
| | Sample_status | Public on Sep 06 2011
| | Sample_submission_date | Aug 19 2011
| | Sample_last_update_date | Sep 06 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared according to standard Affymetrix protocol from 5 microgram total RNA
| | Sample_hyb_protocol | Following fragmentation, 20 microg of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A
| | Sample_data_processing | Quantile normalization and RMA were done with RMAExpress (http://rmaexpress.bmbolstad.com/)
| | Sample_platform_id | GPL97
| | Sample_contact_name | Luc,,Girard
| | Sample_contact_email | Luc.Girard@UTSouthwestern.edu
| | Sample_contact_laboratory | NB8.114A
| | Sample_contact_department | Hamon Center for Therapeutic Oncology Research
| | Sample_contact_institute | UT Southwestern Medical Center
| | Sample_contact_address | 5323 Harry Hines Blvd
| | Sample_contact_city | Dallas
| | Sample_contact_state | TX
| | Sample_contact_zip/postal_code | 75390-8593
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM783nnn/GSM783034/suppl/GSM783034.CEL.gz
| | Sample_series_id | GSE31548
| | Sample_series_id | GSE31908
| | Sample_data_row_count | 22645
| | |
|
GSM783035 | GPL97 |
|
25L(B)
|
Lung adenocarcinoma
|
egfr status: Wild-type
age: 50
race: WNH
Sex: F
smoking: Current
who histologic subtype: ACI, BAC
who grade: MD
mskcc histology: AWBF
surgdte/tb_date: 2000-04-24
pack yrs: 45
time quit (@ initial consult): 0
other: Quit by OR
tumorsite: RtLungTumor
pt: 1
pn: 0
pm: 0
grpstage: 1A
death_ind: A
status: NED
last f/u: 2001-07-05
intstat: 15
|
|
| Sample_geo_accession | GSM783035
| | Sample_status | Public on Sep 06 2011
| | Sample_submission_date | Aug 19 2011
| | Sample_last_update_date | Sep 06 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared according to standard Affymetrix protocol from 5 microgram total RNA
| | Sample_hyb_protocol | Following fragmentation, 20 microg of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A
| | Sample_data_processing | Quantile normalization and RMA were done with RMAExpress (http://rmaexpress.bmbolstad.com/)
| | Sample_platform_id | GPL97
| | Sample_contact_name | Luc,,Girard
| | Sample_contact_email | Luc.Girard@UTSouthwestern.edu
| | Sample_contact_laboratory | NB8.114A
| | Sample_contact_department | Hamon Center for Therapeutic Oncology Research
| | Sample_contact_institute | UT Southwestern Medical Center
| | Sample_contact_address | 5323 Harry Hines Blvd
| | Sample_contact_city | Dallas
| | Sample_contact_state | TX
| | Sample_contact_zip/postal_code | 75390-8593
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM783nnn/GSM783035/suppl/GSM783035.CEL.gz
| | Sample_series_id | GSE31548
| | Sample_series_id | GSE31908
| | Sample_data_row_count | 22645
| | |
|
GSM783036 | GPL97 |
|
27L(B)
|
Lung adenocarcinoma
|
egfr status: Mutant
age: 74
race: WNH
Sex: M
smoking: Former
who histologic subtype: BAC,ACI
who grade: WD
mskcc histology: BWFI
surgdte/tb_date: 2000-01-17
pack yrs: 154
time quit (@ initial consult): >10yrs
other: Cigar
tumorsite: RtLungTumor
pt: 2
pn: 0
pm: 0
grpstage: 1B
rectype1: Pleura-Rt. Parietal
recdte1: 37734
intrec1: 39
death_ind: A
status: AWD
last f/u: 2003-08-23
intstat: 43
|
|
| Sample_geo_accession | GSM783036
| | Sample_status | Public on Sep 06 2011
| | Sample_submission_date | Aug 19 2011
| | Sample_last_update_date | Sep 06 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared according to standard Affymetrix protocol from 5 microgram total RNA
| | Sample_hyb_protocol | Following fragmentation, 20 microg of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A
| | Sample_data_processing | Quantile normalization and RMA were done with RMAExpress (http://rmaexpress.bmbolstad.com/)
| | Sample_platform_id | GPL97
| | Sample_contact_name | Luc,,Girard
| | Sample_contact_email | Luc.Girard@UTSouthwestern.edu
| | Sample_contact_laboratory | NB8.114A
| | Sample_contact_department | Hamon Center for Therapeutic Oncology Research
| | Sample_contact_institute | UT Southwestern Medical Center
| | Sample_contact_address | 5323 Harry Hines Blvd
| | Sample_contact_city | Dallas
| | Sample_contact_state | TX
| | Sample_contact_zip/postal_code | 75390-8593
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM783nnn/GSM783036/suppl/GSM783036.CEL.gz
| | Sample_series_id | GSE31548
| | Sample_series_id | GSE31908
| | Sample_data_row_count | 22645
| | |
|
GSM783037 | GPL97 |
|
32L(B)
|
Lung adenocarcinoma
|
egfr status: Wild-type
age: 58
race: WNH
Sex: F
smoking: Former
who histologic subtype: ACI
who grade: PD
mskcc histology: ACA
surgdte/tb_date: 1998-05-18
pack yrs: 45
time quit (@ initial consult): >10yrs
tumorsite: LtLungTumor
pt: 2
pn: 0
pm: 0
grpstage: 1B
death_ind: D
deathdte: 35945
status: DOC
last f/u: 1998-05-30
intstat: 0
|
|
| Sample_geo_accession | GSM783037
| | Sample_status | Public on Sep 06 2011
| | Sample_submission_date | Aug 19 2011
| | Sample_last_update_date | Sep 06 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared according to standard Affymetrix protocol from 5 microgram total RNA
| | Sample_hyb_protocol | Following fragmentation, 20 microg of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A
| | Sample_data_processing | Quantile normalization and RMA were done with RMAExpress (http://rmaexpress.bmbolstad.com/)
| | Sample_platform_id | GPL97
| | Sample_contact_name | Luc,,Girard
| | Sample_contact_email | Luc.Girard@UTSouthwestern.edu
| | Sample_contact_laboratory | NB8.114A
| | Sample_contact_department | Hamon Center for Therapeutic Oncology Research
| | Sample_contact_institute | UT Southwestern Medical Center
| | Sample_contact_address | 5323 Harry Hines Blvd
| | Sample_contact_city | Dallas
| | Sample_contact_state | TX
| | Sample_contact_zip/postal_code | 75390-8593
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM783nnn/GSM783037/suppl/GSM783037.CEL.gz
| | Sample_series_id | GSE31548
| | Sample_series_id | GSE31908
| | Sample_data_row_count | 22645
| | |
|
GSM783038 | GPL97 |
|
33L(B)
|
Lung adenocarcinoma
|
egfr status: Wild-type
age: 70
race: WNH
Sex: M
smoking: Former
who histologic subtype: ACI
who grade: MD
mskcc histology: ACA
surgdte/tb_date: 2000-02-16
pack yrs: 82
time quit (@ initial consult): 6-10yrs
other: Asbestos exposure
tumorsite: LtLungTumor
pt: 2
pn: 1
pm: 0
grpstage: 2B
rectype1: Mediastinum
recdte1: 36973
intrec1: 13
death_ind: D
deathdte: 37186
status: DOD
last f/u: 2001-10-22
intstat: 20
|
|
| Sample_geo_accession | GSM783038
| | Sample_status | Public on Sep 06 2011
| | Sample_submission_date | Aug 19 2011
| | Sample_last_update_date | Sep 06 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared according to standard Affymetrix protocol from 5 microgram total RNA
| | Sample_hyb_protocol | Following fragmentation, 20 microg of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A
| | Sample_data_processing | Quantile normalization and RMA were done with RMAExpress (http://rmaexpress.bmbolstad.com/)
| | Sample_platform_id | GPL97
| | Sample_contact_name | Luc,,Girard
| | Sample_contact_email | Luc.Girard@UTSouthwestern.edu
| | Sample_contact_laboratory | NB8.114A
| | Sample_contact_department | Hamon Center for Therapeutic Oncology Research
| | Sample_contact_institute | UT Southwestern Medical Center
| | Sample_contact_address | 5323 Harry Hines Blvd
| | Sample_contact_city | Dallas
| | Sample_contact_state | TX
| | Sample_contact_zip/postal_code | 75390-8593
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM783nnn/GSM783038/suppl/GSM783038.CEL.gz
| | Sample_series_id | GSE31548
| | Sample_series_id | GSE31908
| | Sample_data_row_count | 22645
| | |
|
GSM783039 | GPL97 |
|
40L(B)
|
Lung adenocarcinoma
|
egfr status: Mutant
age: 67
race: WNH
Sex: M
smoking: Never
who histologic subtype: BAC,ACI
who grade: MD
mskcc histology: BWFI
surgdte/tb_date: 2000-02-02
pack yrs: 0
other: Cigar
tumorsite: RtLungTumor
pt: 1
pn: 1
pm: 0
grpstage: 2A
rectype1: Pleura
recdte1: 37204
intrec1: 21
death_ind: D
deathdte: 37541
status: DOD
last f/u: 2002-10-12
intstat: 32
|
|
| Sample_geo_accession | GSM783039
| | Sample_status | Public on Sep 06 2011
| | Sample_submission_date | Aug 19 2011
| | Sample_last_update_date | Sep 06 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared according to standard Affymetrix protocol from 5 microgram total RNA
| | Sample_hyb_protocol | Following fragmentation, 20 microg of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A
| | Sample_data_processing | Quantile normalization and RMA were done with RMAExpress (http://rmaexpress.bmbolstad.com/)
| | Sample_platform_id | GPL97
| | Sample_contact_name | Luc,,Girard
| | Sample_contact_email | Luc.Girard@UTSouthwestern.edu
| | Sample_contact_laboratory | NB8.114A
| | Sample_contact_department | Hamon Center for Therapeutic Oncology Research
| | Sample_contact_institute | UT Southwestern Medical Center
| | Sample_contact_address | 5323 Harry Hines Blvd
| | Sample_contact_city | Dallas
| | Sample_contact_state | TX
| | Sample_contact_zip/postal_code | 75390-8593
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM783nnn/GSM783039/suppl/GSM783039.CEL.gz
| | Sample_series_id | GSE31548
| | Sample_series_id | GSE31908
| | Sample_data_row_count | 22645
| | |
|
GSM783040 | GPL97 |
|
41L(B)
|
Lung adenocarcinoma
|
egfr status: Mutant
age: 57
race: WNH
Sex: F
smoking: Former
who histologic subtype: BAC, ACI
who grade: WD
mskcc histology: BWFI
surgdte/tb_date: 1996-11-25
pack yrs: 37
time quit (@ initial consult): UNK
tumorsite: RtLungTumor
pt: 2
pn: 0
pm: 0
grpstage: 1B
death_ind: A
status: NED
last f/u: 2000-10-03
intstat: 47
|
|
| Sample_geo_accession | GSM783040
| | Sample_status | Public on Sep 06 2011
| | Sample_submission_date | Aug 19 2011
| | Sample_last_update_date | Sep 06 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared according to standard Affymetrix protocol from 5 microgram total RNA
| | Sample_hyb_protocol | Following fragmentation, 20 microg of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A
| | Sample_data_processing | Quantile normalization and RMA were done with RMAExpress (http://rmaexpress.bmbolstad.com/)
| | Sample_platform_id | GPL97
| | Sample_contact_name | Luc,,Girard
| | Sample_contact_email | Luc.Girard@UTSouthwestern.edu
| | Sample_contact_laboratory | NB8.114A
| | Sample_contact_department | Hamon Center for Therapeutic Oncology Research
| | Sample_contact_institute | UT Southwestern Medical Center
| | Sample_contact_address | 5323 Harry Hines Blvd
| | Sample_contact_city | Dallas
| | Sample_contact_state | TX
| | Sample_contact_zip/postal_code | 75390-8593
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM783nnn/GSM783040/suppl/GSM783040.CEL.gz
| | Sample_series_id | GSE31548
| | Sample_series_id | GSE31908
| | Sample_data_row_count | 22645
| | |
|
GSM783041 | GPL97 |
|
44L(B)
|
Lung adenocarcinoma
|
egfr status: Mutant
age: 76
race: WNH
Sex: F
smoking: Never
who histologic subtype: BAC,ACI
who grade: MD
mskcc histology: BWFI
surgdte/tb_date: 2001-07-12
pack yrs: 0
tumorsite: LungTumor,LtUpper
pt: 1
pn: 0
pm: 0
grpstage: 1A
death_ind: A
status: NED
last f/u: 2004-08-23
intstat: 37
|
|
| Sample_geo_accession | GSM783041
| | Sample_status | Public on Sep 06 2011
| | Sample_submission_date | Aug 19 2011
| | Sample_last_update_date | Sep 06 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared according to standard Affymetrix protocol from 5 microgram total RNA
| | Sample_hyb_protocol | Following fragmentation, 20 microg of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A
| | Sample_data_processing | Quantile normalization and RMA were done with RMAExpress (http://rmaexpress.bmbolstad.com/)
| | Sample_platform_id | GPL97
| | Sample_contact_name | Luc,,Girard
| | Sample_contact_email | Luc.Girard@UTSouthwestern.edu
| | Sample_contact_laboratory | NB8.114A
| | Sample_contact_department | Hamon Center for Therapeutic Oncology Research
| | Sample_contact_institute | UT Southwestern Medical Center
| | Sample_contact_address | 5323 Harry Hines Blvd
| | Sample_contact_city | Dallas
| | Sample_contact_state | TX
| | Sample_contact_zip/postal_code | 75390-8593
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM783nnn/GSM783041/suppl/GSM783041.CEL.gz
| | Sample_series_id | GSE31548
| | Sample_series_id | GSE31908
| | Sample_data_row_count | 22645
| | |
|
GSM783042 | GPL97 |
|
48L(B)
|
Lung adenocarcinoma
|
egfr status: Mutant
age: 49
race: WNH
Sex: F
smoking: Never
who histologic subtype: BAC, ACI
who grade: WD
mskcc histology: BWFI
surgdte/tb_date: 1996-01-16
pack yrs: 0
tumorsite: LtLungTumo
pt: 1
pn: 0
pm: 0
grpstage: 1A
death_ind: A
status: NED
last f/u: 2003-06-25
intstat: 89
|
|
| Sample_geo_accession | GSM783042
| | Sample_status | Public on Sep 06 2011
| | Sample_submission_date | Aug 19 2011
| | Sample_last_update_date | Sep 06 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared according to standard Affymetrix protocol from 5 microgram total RNA
| | Sample_hyb_protocol | Following fragmentation, 20 microg of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A
| | Sample_data_processing | Quantile normalization and RMA were done with RMAExpress (http://rmaexpress.bmbolstad.com/)
| | Sample_platform_id | GPL97
| | Sample_contact_name | Luc,,Girard
| | Sample_contact_email | Luc.Girard@UTSouthwestern.edu
| | Sample_contact_laboratory | NB8.114A
| | Sample_contact_department | Hamon Center for Therapeutic Oncology Research
| | Sample_contact_institute | UT Southwestern Medical Center
| | Sample_contact_address | 5323 Harry Hines Blvd
| | Sample_contact_city | Dallas
| | Sample_contact_state | TX
| | Sample_contact_zip/postal_code | 75390-8593
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM783nnn/GSM783042/suppl/GSM783042.CEL.gz
| | Sample_series_id | GSE31548
| | Sample_series_id | GSE31908
| | Sample_data_row_count | 22645
| | |
|
GSM783043 | GPL97 |
|
52L(B)
|
Lung adenocarcinoma
|
egfr status: Wild-type
age: 46
race: WNH
Sex: F
smoking: Former
who histologic subtype: ACI
who grade: MD
mskcc histology: ACA
surgdte/tb_date: 1998-12-14
pack yrs: 80
time quit (@ initial consult): 1-4wks
tumorsite: RtLungTumor
pt: 1
pn: 0
pm: 0
grpstage: 1A
death_ind: A
status: NED
last f/u: 2002-03-08
intstat: 39
|
|
| Sample_geo_accession | GSM783043
| | Sample_status | Public on Sep 06 2011
| | Sample_submission_date | Aug 19 2011
| | Sample_last_update_date | Sep 06 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared according to standard Affymetrix protocol from 5 microgram total RNA
| | Sample_hyb_protocol | Following fragmentation, 20 microg of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A
| | Sample_data_processing | Quantile normalization and RMA were done with RMAExpress (http://rmaexpress.bmbolstad.com/)
| | Sample_platform_id | GPL97
| | Sample_contact_name | Luc,,Girard
| | Sample_contact_email | Luc.Girard@UTSouthwestern.edu
| | Sample_contact_laboratory | NB8.114A
| | Sample_contact_department | Hamon Center for Therapeutic Oncology Research
| | Sample_contact_institute | UT Southwestern Medical Center
| | Sample_contact_address | 5323 Harry Hines Blvd
| | Sample_contact_city | Dallas
| | Sample_contact_state | TX
| | Sample_contact_zip/postal_code | 75390-8593
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM783nnn/GSM783043/suppl/GSM783043.CEL.gz
| | Sample_series_id | GSE31548
| | Sample_series_id | GSE31908
| | Sample_data_row_count | 22645
| | |
|
GSM783044 | GPL97 |
|
54L(B)
|
Lung adenocarcinoma
|
egfr status: Wild-type
age: 51
race: WNH
Sex: M
smoking: Never
who histologic subtype: BAC,ACI
who grade: WD
mskcc histology: BWFI
surgdte/tb_date: 1999-01-11
pack yrs: 0
tumorsite: RtLungTumor
pt: 2
pn: 1
pm: 0
grpstage: 2B
death_ind: A
status: NED
last f/u: 2003-03-01
intstat: 50
|
|
| Sample_geo_accession | GSM783044
| | Sample_status | Public on Sep 06 2011
| | Sample_submission_date | Aug 19 2011
| | Sample_last_update_date | Sep 06 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared according to standard Affymetrix protocol from 5 microgram total RNA
| | Sample_hyb_protocol | Following fragmentation, 20 microg of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A
| | Sample_data_processing | Quantile normalization and RMA were done with RMAExpress (http://rmaexpress.bmbolstad.com/)
| | Sample_platform_id | GPL97
| | Sample_contact_name | Luc,,Girard
| | Sample_contact_email | Luc.Girard@UTSouthwestern.edu
| | Sample_contact_laboratory | NB8.114A
| | Sample_contact_department | Hamon Center for Therapeutic Oncology Research
| | Sample_contact_institute | UT Southwestern Medical Center
| | Sample_contact_address | 5323 Harry Hines Blvd
| | Sample_contact_city | Dallas
| | Sample_contact_state | TX
| | Sample_contact_zip/postal_code | 75390-8593
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM783nnn/GSM783044/suppl/GSM783044.CEL.gz
| | Sample_series_id | GSE31548
| | Sample_series_id | GSE31908
| | Sample_data_row_count | 22645
| | |
|
GSM783045 | GPL97 |
|
56L(B)
|
Lung adenocarcinoma
|
egfr status: Mutant
age: 50
race: WNH
Sex: F
smoking: Former
who histologic subtype: ACI
who grade: MD
mskcc histology: ACA
surgdte/tb_date: 2000-06-13
pack yrs: 10
time quit (@ initial consult): >10yrs
tumorsite: LtLungTumor
pt: 2
pn: 2
pm: 0
grpstage: 3A
rectype1: ® Posterior chest wall
recdte1: 37529
intrec1: 27
death_ind: A
status: DOD
last f/u: 2003-12-27
intstat: 42
|
|
| Sample_geo_accession | GSM783045
| | Sample_status | Public on Sep 06 2011
| | Sample_submission_date | Aug 19 2011
| | Sample_last_update_date | Sep 06 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared according to standard Affymetrix protocol from 5 microgram total RNA
| | Sample_hyb_protocol | Following fragmentation, 20 microg of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A
| | Sample_data_processing | Quantile normalization and RMA were done with RMAExpress (http://rmaexpress.bmbolstad.com/)
| | Sample_platform_id | GPL97
| | Sample_contact_name | Luc,,Girard
| | Sample_contact_email | Luc.Girard@UTSouthwestern.edu
| | Sample_contact_laboratory | NB8.114A
| | Sample_contact_department | Hamon Center for Therapeutic Oncology Research
| | Sample_contact_institute | UT Southwestern Medical Center
| | Sample_contact_address | 5323 Harry Hines Blvd
| | Sample_contact_city | Dallas
| | Sample_contact_state | TX
| | Sample_contact_zip/postal_code | 75390-8593
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM783nnn/GSM783045/suppl/GSM783045.CEL.gz
| | Sample_series_id | GSE31548
| | Sample_series_id | GSE31908
| | Sample_data_row_count | 22645
| | |
|
GSM783046 | GPL97 |
|
57L(B)
|
Lung adenocarcinoma
|
egfr status: Wild-type
age: 69
race: WNH
Sex: F
smoking: Former
who histologic subtype: SOL
who grade: PD
mskcc histology: ACA
surgdte/tb_date: 1999-06-23
pack yrs: UNK
time quit (@ initial consult): 0
other: UNK if quit by OR, Pipe
tumorsite: LungTumor
pt: 2
pn: 0
pm: 0
grpstage: 1B
death_ind: A
status: NED
last f/u: 2004-06-23
intstat: 60
|
|
| Sample_geo_accession | GSM783046
| | Sample_status | Public on Sep 06 2011
| | Sample_submission_date | Aug 19 2011
| | Sample_last_update_date | Sep 06 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared according to standard Affymetrix protocol from 5 microgram total RNA
| | Sample_hyb_protocol | Following fragmentation, 20 microg of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A
| | Sample_data_processing | Quantile normalization and RMA were done with RMAExpress (http://rmaexpress.bmbolstad.com/)
| | Sample_platform_id | GPL97
| | Sample_contact_name | Luc,,Girard
| | Sample_contact_email | Luc.Girard@UTSouthwestern.edu
| | Sample_contact_laboratory | NB8.114A
| | Sample_contact_department | Hamon Center for Therapeutic Oncology Research
| | Sample_contact_institute | UT Southwestern Medical Center
| | Sample_contact_address | 5323 Harry Hines Blvd
| | Sample_contact_city | Dallas
| | Sample_contact_state | TX
| | Sample_contact_zip/postal_code | 75390-8593
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM783nnn/GSM783046/suppl/GSM783046.CEL.gz
| | Sample_series_id | GSE31548
| | Sample_series_id | GSE31908
| | Sample_data_row_count | 22645
| | |
|
GSM783047 | GPL97 |
|
65L(B)
|
Lung adenocarcinoma
|
egfr status: Mutant
age: 53
race: WNH
Sex: F
smoking: Never
who histologic subtype: BAC, ACI
who grade: WD
mskcc histology: BWFI
surgdte/tb_date: 2000-04-11
pack yrs: 0
other: 2nd hand smoke exposure
tumorsite: RtLungTumor
pt: 1
pn: 0
pm: 0
grpstage: 1A
death_ind: A
status: NED
last f/u: 2003-04-15
intstat: 36
|
|
| Sample_geo_accession | GSM783047
| | Sample_status | Public on Sep 06 2011
| | Sample_submission_date | Aug 19 2011
| | Sample_last_update_date | Sep 06 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared according to standard Affymetrix protocol from 5 microgram total RNA
| | Sample_hyb_protocol | Following fragmentation, 20 microg of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A
| | Sample_data_processing | Quantile normalization and RMA were done with RMAExpress (http://rmaexpress.bmbolstad.com/)
| | Sample_platform_id | GPL97
| | Sample_contact_name | Luc,,Girard
| | Sample_contact_email | Luc.Girard@UTSouthwestern.edu
| | Sample_contact_laboratory | NB8.114A
| | Sample_contact_department | Hamon Center for Therapeutic Oncology Research
| | Sample_contact_institute | UT Southwestern Medical Center
| | Sample_contact_address | 5323 Harry Hines Blvd
| | Sample_contact_city | Dallas
| | Sample_contact_state | TX
| | Sample_contact_zip/postal_code | 75390-8593
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM783nnn/GSM783047/suppl/GSM783047.CEL.gz
| | Sample_series_id | GSE31548
| | Sample_series_id | GSE31908
| | Sample_data_row_count | 22645
| | |
|
GSM783048 | GPL97 |
|
67L(B)
|
Lung adenocarcinoma
|
egfr status: Wild-type
age: 53
race: WNH
Sex: F
smoking: Former
who histologic subtype: SOL
who grade: PD
mskcc histology: ACA
surgdte/tb_date: 2000-08-31
pack yrs: 123
time quit (@ initial consult): 6-12mos
tumorsite: RtLungTumor
pt: 2
pn: 1
pm: 0
grpstage: 2B
rectype1: Peripancreatic
recdte1: 37138
intrec1: 13
death_ind: D
deathdte: 37361
status: DOD
last f/u: 2002-04-15
intstat: 20
|
|
| Sample_geo_accession | GSM783048
| | Sample_status | Public on Sep 06 2011
| | Sample_submission_date | Aug 19 2011
| | Sample_last_update_date | Sep 06 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared according to standard Affymetrix protocol from 5 microgram total RNA
| | Sample_hyb_protocol | Following fragmentation, 20 microg of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A
| | Sample_data_processing | Quantile normalization and RMA were done with RMAExpress (http://rmaexpress.bmbolstad.com/)
| | Sample_platform_id | GPL97
| | Sample_contact_name | Luc,,Girard
| | Sample_contact_email | Luc.Girard@UTSouthwestern.edu
| | Sample_contact_laboratory | NB8.114A
| | Sample_contact_department | Hamon Center for Therapeutic Oncology Research
| | Sample_contact_institute | UT Southwestern Medical Center
| | Sample_contact_address | 5323 Harry Hines Blvd
| | Sample_contact_city | Dallas
| | Sample_contact_state | TX
| | Sample_contact_zip/postal_code | 75390-8593
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM783nnn/GSM783048/suppl/GSM783048.CEL.gz
| | Sample_series_id | GSE31548
| | Sample_series_id | GSE31908
| | Sample_data_row_count | 22645
| | |
|
GSM783049 | GPL97 |
|
68L(B)
|
Lung adenocarcinoma
|
egfr status: Mutant
age: 61
race: WNH
Sex: M
smoking: Former
who histologic subtype: ACI, BAC
who grade: MD
mskcc histology: AWBF
surgdte/tb_date: 2000-05-03
pack yrs: 5
time quit (@ initial consult): >10yrs
tumorsite: LungTumor
pt: 2
pn: 0
pm: 0
grpstage: 1B
rectype1: Lung-RLL
recdte1: 37459
intrec1: 26
death_ind: A
status: NED
last f/u: 2003-10-07
intstat: 41
|
|
| Sample_geo_accession | GSM783049
| | Sample_status | Public on Sep 06 2011
| | Sample_submission_date | Aug 19 2011
| | Sample_last_update_date | Sep 06 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared according to standard Affymetrix protocol from 5 microgram total RNA
| | Sample_hyb_protocol | Following fragmentation, 20 microg of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A
| | Sample_data_processing | Quantile normalization and RMA were done with RMAExpress (http://rmaexpress.bmbolstad.com/)
| | Sample_platform_id | GPL97
| | Sample_contact_name | Luc,,Girard
| | Sample_contact_email | Luc.Girard@UTSouthwestern.edu
| | Sample_contact_laboratory | NB8.114A
| | Sample_contact_department | Hamon Center for Therapeutic Oncology Research
| | Sample_contact_institute | UT Southwestern Medical Center
| | Sample_contact_address | 5323 Harry Hines Blvd
| | Sample_contact_city | Dallas
| | Sample_contact_state | TX
| | Sample_contact_zip/postal_code | 75390-8593
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM783nnn/GSM783049/suppl/GSM783049.CEL.gz
| | Sample_series_id | GSE31548
| | Sample_series_id | GSE31908
| | Sample_data_row_count | 22645
| | |
|
GSM783050 | GPL97 |
|
70L(B)
|
Lung adenocarcinoma
|
egfr status: Wild-type
age: 74
race: WNH
Sex: F
smoking: Current
who histologic subtype: SOL
who grade: PD
mskcc histology: ACA
surgdte/tb_date: 1999-12-15
pack yrs: 50
time quit (@ initial consult): 0
other: Quit by OR
tumorsite: LtLungTumor
pt: 2
pn: 1
pm: 0
grpstage: 2B
death_ind: A
status: NED
last f/u: 2003-06-24
intstat: 42
|
|
| Sample_geo_accession | GSM783050
| | Sample_status | Public on Sep 06 2011
| | Sample_submission_date | Aug 19 2011
| | Sample_last_update_date | Sep 06 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared according to standard Affymetrix protocol from 5 microgram total RNA
| | Sample_hyb_protocol | Following fragmentation, 20 microg of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A
| | Sample_data_processing | Quantile normalization and RMA were done with RMAExpress (http://rmaexpress.bmbolstad.com/)
| | Sample_platform_id | GPL97
| | Sample_contact_name | Luc,,Girard
| | Sample_contact_email | Luc.Girard@UTSouthwestern.edu
| | Sample_contact_laboratory | NB8.114A
| | Sample_contact_department | Hamon Center for Therapeutic Oncology Research
| | Sample_contact_institute | UT Southwestern Medical Center
| | Sample_contact_address | 5323 Harry Hines Blvd
| | Sample_contact_city | Dallas
| | Sample_contact_state | TX
| | Sample_contact_zip/postal_code | 75390-8593
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM783nnn/GSM783050/suppl/GSM783050.CEL.gz
| | Sample_series_id | GSE31548
| | Sample_series_id | GSE31908
| | Sample_data_row_count | 22645
| | |
|
GSM783051 | GPL97 |
|
71L(B)
|
Lung adenocarcinoma
|
egfr status: Mutant
age: 48
race: WNH
Sex: F
smoking: Former
who histologic subtype: ACI, BAC
who grade: MD
mskcc histology: AWBF
surgdte/tb_date: 1998-10-12
pack yrs: 3
time quit (@ initial consult): >10yrs
tumorsite: LtLungTumor
pt: 1
pn: 2
pm: 0
grpstage: 3A
rectype1: Brain
recdte1: 36960
intrec1: 29
death_ind: D
deathdte: 37628
status: DOD
last f/u: 2003-01-07
intstat: 51
|
|
| Sample_geo_accession | GSM783051
| | Sample_status | Public on Sep 06 2011
| | Sample_submission_date | Aug 19 2011
| | Sample_last_update_date | Sep 06 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared according to standard Affymetrix protocol from 5 microgram total RNA
| | Sample_hyb_protocol | Following fragmentation, 20 microg of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A
| | Sample_data_processing | Quantile normalization and RMA were done with RMAExpress (http://rmaexpress.bmbolstad.com/)
| | Sample_platform_id | GPL97
| | Sample_contact_name | Luc,,Girard
| | Sample_contact_email | Luc.Girard@UTSouthwestern.edu
| | Sample_contact_laboratory | NB8.114A
| | Sample_contact_department | Hamon Center for Therapeutic Oncology Research
| | Sample_contact_institute | UT Southwestern Medical Center
| | Sample_contact_address | 5323 Harry Hines Blvd
| | Sample_contact_city | Dallas
| | Sample_contact_state | TX
| | Sample_contact_zip/postal_code | 75390-8593
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM783nnn/GSM783051/suppl/GSM783051.CEL.gz
| | Sample_series_id | GSE31548
| | Sample_series_id | GSE31908
| | Sample_data_row_count | 22645
| | |
|
GSM783052 | GPL97 |
|
73L(B)
|
Lung adenocarcinoma
|
egfr status: Mutant
age: 70
race: BNH
Sex: F
smoking: Former
who histologic subtype: ACI
who grade: MD
mskcc histology: ACA
surgdte/tb_date: 2000-10-18
pack yrs: 5
time quit (@ initial consult): 6-10yrs
tumorsite: LtLungTumor
ct: TX
pt: 2
pn: 0
pm: 0
grpstage: 1B
rectype1: Left Suprahilar region
recdte1: 36978
intrec1: 5
death_ind: A
status: NED
last f/u: 2004-06-23
intstat: 44
|
|
| Sample_geo_accession | GSM783052
| | Sample_status | Public on Sep 06 2011
| | Sample_submission_date | Aug 19 2011
| | Sample_last_update_date | Sep 06 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared according to standard Affymetrix protocol from 5 microgram total RNA
| | Sample_hyb_protocol | Following fragmentation, 20 microg of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A
| | Sample_data_processing | Quantile normalization and RMA were done with RMAExpress (http://rmaexpress.bmbolstad.com/)
| | Sample_platform_id | GPL97
| | Sample_contact_name | Luc,,Girard
| | Sample_contact_email | Luc.Girard@UTSouthwestern.edu
| | Sample_contact_laboratory | NB8.114A
| | Sample_contact_department | Hamon Center for Therapeutic Oncology Research
| | Sample_contact_institute | UT Southwestern Medical Center
| | Sample_contact_address | 5323 Harry Hines Blvd
| | Sample_contact_city | Dallas
| | Sample_contact_state | TX
| | Sample_contact_zip/postal_code | 75390-8593
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM783nnn/GSM783052/suppl/GSM783052.CEL.gz
| | Sample_series_id | GSE31548
| | Sample_series_id | GSE31908
| | Sample_data_row_count | 22645
| | |
|
GSM783053 | GPL97 |
|
77L(B)
|
Lung adenocarcinoma
|
egfr status: Wild-type
age: 64
race: WNH
Sex: F
smoking: Former
who histologic subtype: ACI
who grade: MD
mskcc histology: ACA
surgdte/tb_date: 2001-06-04
pack yrs: 40
time quit (@ initial consult): 1-6mos
tumorsite: LungTumor,LtUpper
pt: 1
pn: 2
pm: 0
grpstage: 3A
death_ind: A
deathdte: 38054
status: DOC
last f/u: 2004-03-08
|
|
| Sample_geo_accession | GSM783053
| | Sample_status | Public on Sep 06 2011
| | Sample_submission_date | Aug 19 2011
| | Sample_last_update_date | Sep 06 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared according to standard Affymetrix protocol from 5 microgram total RNA
| | Sample_hyb_protocol | Following fragmentation, 20 microg of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A
| | Sample_data_processing | Quantile normalization and RMA were done with RMAExpress (http://rmaexpress.bmbolstad.com/)
| | Sample_platform_id | GPL97
| | Sample_contact_name | Luc,,Girard
| | Sample_contact_email | Luc.Girard@UTSouthwestern.edu
| | Sample_contact_laboratory | NB8.114A
| | Sample_contact_department | Hamon Center for Therapeutic Oncology Research
| | Sample_contact_institute | UT Southwestern Medical Center
| | Sample_contact_address | 5323 Harry Hines Blvd
| | Sample_contact_city | Dallas
| | Sample_contact_state | TX
| | Sample_contact_zip/postal_code | 75390-8593
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM783nnn/GSM783053/suppl/GSM783053.CEL.gz
| | Sample_series_id | GSE31548
| | Sample_series_id | GSE31908
| | Sample_data_row_count | 22645
| | |
|
GSM783054 | GPL97 |
|
80L(B)
|
Lung adenocarcinoma
|
egfr status: Wild-type
age: 51
race: WNH
Sex: F
smoking: UNK
who histologic subtype: ACI, BAC
who grade: MD
mskcc histology: AWBF
surgdte/tb_date: 1993-01-15
pack yrs: UNK
other: Not available
tumorsite: (L) Upper Lobe
pt: 1
pn: 1
pm: 0
grpstage: 1A
rectype1: Bone-rib
recdte1: 33557
intrec1: 7
death_ind: D
deathdte: 34080
status: DOD
last f/u: 1993-04-21
intstat: 3
|
|
| Sample_geo_accession | GSM783054
| | Sample_status | Public on Sep 06 2011
| | Sample_submission_date | Aug 19 2011
| | Sample_last_update_date | Sep 06 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared according to standard Affymetrix protocol from 5 microgram total RNA
| | Sample_hyb_protocol | Following fragmentation, 20 microg of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A
| | Sample_data_processing | Quantile normalization and RMA were done with RMAExpress (http://rmaexpress.bmbolstad.com/)
| | Sample_platform_id | GPL97
| | Sample_contact_name | Luc,,Girard
| | Sample_contact_email | Luc.Girard@UTSouthwestern.edu
| | Sample_contact_laboratory | NB8.114A
| | Sample_contact_department | Hamon Center for Therapeutic Oncology Research
| | Sample_contact_institute | UT Southwestern Medical Center
| | Sample_contact_address | 5323 Harry Hines Blvd
| | Sample_contact_city | Dallas
| | Sample_contact_state | TX
| | Sample_contact_zip/postal_code | 75390-8593
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM783nnn/GSM783054/suppl/GSM783054.CEL.gz
| | Sample_series_id | GSE31548
| | Sample_series_id | GSE31908
| | Sample_data_row_count | 22645
| | |
|
GSM783055 | GPL97 |
|
81L(B)
|
Lung adenocarcinoma
|
egfr status: Mutant
age: 63
race: WNH
Sex: F
smoking: Never
who histologic subtype: BAC, ACI
who grade: WD
mskcc histology: BWFI
surgdte/tb_date: 2000-10-03
pack yrs: 0
other: 2nd hand smoke exposure
tumorsite: RtLungTumor
pt: 1
pn: 0
pm: 0
grpstage: 1A
death_ind: A
status: NED
last f/u: 2004-05-10
intstat: 44
|
|
| Sample_geo_accession | GSM783055
| | Sample_status | Public on Sep 06 2011
| | Sample_submission_date | Aug 19 2011
| | Sample_last_update_date | Sep 06 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared according to standard Affymetrix protocol from 5 microgram total RNA
| | Sample_hyb_protocol | Following fragmentation, 20 microg of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A
| | Sample_data_processing | Quantile normalization and RMA were done with RMAExpress (http://rmaexpress.bmbolstad.com/)
| | Sample_platform_id | GPL97
| | Sample_contact_name | Luc,,Girard
| | Sample_contact_email | Luc.Girard@UTSouthwestern.edu
| | Sample_contact_laboratory | NB8.114A
| | Sample_contact_department | Hamon Center for Therapeutic Oncology Research
| | Sample_contact_institute | UT Southwestern Medical Center
| | Sample_contact_address | 5323 Harry Hines Blvd
| | Sample_contact_city | Dallas
| | Sample_contact_state | TX
| | Sample_contact_zip/postal_code | 75390-8593
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM783nnn/GSM783055/suppl/GSM783055.CEL.gz
| | Sample_series_id | GSE31548
| | Sample_series_id | GSE31908
| | Sample_data_row_count | 22645
| | |
|
GSM783056 | GPL97 |
|
83L(B)
|
Lung adenocarcinoma
|
egfr status: Mutant
age: 74
race: WNH
Sex: F
smoking: Never
who histologic subtype: ACI
who grade: MD
mskcc histology: ACA
surgdte/tb_date: 2000-04-28
pack yrs: 0
tumorsite: LtLungTumor
ct: T1
pt: 2
pn: 1
pm: 0
grpstage: 2B
rectype1: Pleura
recdte1: 37412
intrec1: 26
death_ind: A
status: AWD
last f/u: 2004-06-10
intstat: 50
|
|
| Sample_geo_accession | GSM783056
| | Sample_status | Public on Sep 06 2011
| | Sample_submission_date | Aug 19 2011
| | Sample_last_update_date | Sep 06 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared according to standard Affymetrix protocol from 5 microgram total RNA
| | Sample_hyb_protocol | Following fragmentation, 20 microg of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A
| | Sample_data_processing | Quantile normalization and RMA were done with RMAExpress (http://rmaexpress.bmbolstad.com/)
| | Sample_platform_id | GPL97
| | Sample_contact_name | Luc,,Girard
| | Sample_contact_email | Luc.Girard@UTSouthwestern.edu
| | Sample_contact_laboratory | NB8.114A
| | Sample_contact_department | Hamon Center for Therapeutic Oncology Research
| | Sample_contact_institute | UT Southwestern Medical Center
| | Sample_contact_address | 5323 Harry Hines Blvd
| | Sample_contact_city | Dallas
| | Sample_contact_state | TX
| | Sample_contact_zip/postal_code | 75390-8593
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM783nnn/GSM783056/suppl/GSM783056.CEL.gz
| | Sample_series_id | GSE31548
| | Sample_series_id | GSE31908
| | Sample_data_row_count | 22645
| | |
|
GSM783057 | GPL97 |
|
94L(B)
|
Lung adenocarcinoma
|
egfr status: Mutant
age: 79
race: WNH
Sex: F
smoking: Never
who histologic subtype: ACI, BAC
who grade: MD
mskcc histology: AWBF
surgdte/tb_date: 1998-02-12
pack yrs: 0
tumorsite: LungTumor
pt: 1
pn: 1
pm: 0
grpstage: 2A
rectype1: Brain ® temporal lobe
recdte1: 36032
intrec1: 6
death_ind: D
deathdte: 36147
status: DOD
last f/u: 1998-12-18
intstat: 10
|
|
| Sample_geo_accession | GSM783057
| | Sample_status | Public on Sep 06 2011
| | Sample_submission_date | Aug 19 2011
| | Sample_last_update_date | Sep 06 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared according to standard Affymetrix protocol from 5 microgram total RNA
| | Sample_hyb_protocol | Following fragmentation, 20 microg of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A
| | Sample_data_processing | Quantile normalization and RMA were done with RMAExpress (http://rmaexpress.bmbolstad.com/)
| | Sample_platform_id | GPL97
| | Sample_contact_name | Luc,,Girard
| | Sample_contact_email | Luc.Girard@UTSouthwestern.edu
| | Sample_contact_laboratory | NB8.114A
| | Sample_contact_department | Hamon Center for Therapeutic Oncology Research
| | Sample_contact_institute | UT Southwestern Medical Center
| | Sample_contact_address | 5323 Harry Hines Blvd
| | Sample_contact_city | Dallas
| | Sample_contact_state | TX
| | Sample_contact_zip/postal_code | 75390-8593
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM783nnn/GSM783057/suppl/GSM783057.CEL.gz
| | Sample_series_id | GSE31548
| | Sample_series_id | GSE31908
| | Sample_data_row_count | 22645
| | |
|
GSM783058 | GPL97 |
|
104L(B)
|
Lung adenocarcinoma
|
egfr status: Wild-type
age: 69
race: WNH
Sex: M
smoking: Never
who histologic subtype: ACI
who grade: MD
mskcc histology: ACA
surgdte/tb_date: 1999-05-11
pack yrs: 0
tumorsite: LungTumor
pt: 1
pn: 2
pm: 0
grpstage: 3A
death_ind: A
status: NED
last f/u: 2002-03-22
intstat: 34
|
|
| Sample_geo_accession | GSM783058
| | Sample_status | Public on Sep 06 2011
| | Sample_submission_date | Aug 19 2011
| | Sample_last_update_date | Sep 06 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared according to standard Affymetrix protocol from 5 microgram total RNA
| | Sample_hyb_protocol | Following fragmentation, 20 microg of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A
| | Sample_data_processing | Quantile normalization and RMA were done with RMAExpress (http://rmaexpress.bmbolstad.com/)
| | Sample_platform_id | GPL97
| | Sample_contact_name | Luc,,Girard
| | Sample_contact_email | Luc.Girard@UTSouthwestern.edu
| | Sample_contact_laboratory | NB8.114A
| | Sample_contact_department | Hamon Center for Therapeutic Oncology Research
| | Sample_contact_institute | UT Southwestern Medical Center
| | Sample_contact_address | 5323 Harry Hines Blvd
| | Sample_contact_city | Dallas
| | Sample_contact_state | TX
| | Sample_contact_zip/postal_code | 75390-8593
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM783nnn/GSM783058/suppl/GSM783058.CEL.gz
| | Sample_series_id | GSE31548
| | Sample_series_id | GSE31908
| | Sample_data_row_count | 22645
| | |
|
GSM783059 | GPL97 |
|
7NL(B)
|
Normal lung
|
egfr status: Wild-type
Sex: F
smoking: Never
|
|
| Sample_geo_accession | GSM783059
| | Sample_status | Public on Sep 06 2011
| | Sample_submission_date | Aug 19 2011
| | Sample_last_update_date | Sep 06 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared according to standard Affymetrix protocol from 5 microgram total RNA
| | Sample_hyb_protocol | Following fragmentation, 20 microg of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A
| | Sample_data_processing | Quantile normalization and RMA were done with RMAExpress (http://rmaexpress.bmbolstad.com/)
| | Sample_platform_id | GPL97
| | Sample_contact_name | Luc,,Girard
| | Sample_contact_email | Luc.Girard@UTSouthwestern.edu
| | Sample_contact_laboratory | NB8.114A
| | Sample_contact_department | Hamon Center for Therapeutic Oncology Research
| | Sample_contact_institute | UT Southwestern Medical Center
| | Sample_contact_address | 5323 Harry Hines Blvd
| | Sample_contact_city | Dallas
| | Sample_contact_state | TX
| | Sample_contact_zip/postal_code | 75390-8593
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM783nnn/GSM783059/suppl/GSM783059.CEL.gz
| | Sample_series_id | GSE31548
| | Sample_series_id | GSE31908
| | Sample_data_row_count | 22645
| | |
|
GSM783060 | GPL97 |
|
8NL(B)
|
Normal lung
|
egfr status: Wild-type
age: 65
race: WNH
Sex: F
smoking: Former
|
|
| Sample_geo_accession | GSM783060
| | Sample_status | Public on Sep 06 2011
| | Sample_submission_date | Aug 19 2011
| | Sample_last_update_date | Sep 06 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared according to standard Affymetrix protocol from 5 microgram total RNA
| | Sample_hyb_protocol | Following fragmentation, 20 microg of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A
| | Sample_data_processing | Quantile normalization and RMA were done with RMAExpress (http://rmaexpress.bmbolstad.com/)
| | Sample_platform_id | GPL97
| | Sample_contact_name | Luc,,Girard
| | Sample_contact_email | Luc.Girard@UTSouthwestern.edu
| | Sample_contact_laboratory | NB8.114A
| | Sample_contact_department | Hamon Center for Therapeutic Oncology Research
| | Sample_contact_institute | UT Southwestern Medical Center
| | Sample_contact_address | 5323 Harry Hines Blvd
| | Sample_contact_city | Dallas
| | Sample_contact_state | TX
| | Sample_contact_zip/postal_code | 75390-8593
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM783nnn/GSM783060/suppl/GSM783060.CEL.gz
| | Sample_series_id | GSE31548
| | Sample_series_id | GSE31908
| | Sample_data_row_count | 22645
| | |
|
GSM783061 | GPL97 |
|
10NL(B)
|
Normal lung
|
egfr status: Wild-type
Sex: M
smoking: Current
|
|
| Sample_geo_accession | GSM783061
| | Sample_status | Public on Sep 06 2011
| | Sample_submission_date | Aug 19 2011
| | Sample_last_update_date | Sep 06 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared according to standard Affymetrix protocol from 5 microgram total RNA
| | Sample_hyb_protocol | Following fragmentation, 20 microg of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A
| | Sample_data_processing | Quantile normalization and RMA were done with RMAExpress (http://rmaexpress.bmbolstad.com/)
| | Sample_platform_id | GPL97
| | Sample_contact_name | Luc,,Girard
| | Sample_contact_email | Luc.Girard@UTSouthwestern.edu
| | Sample_contact_laboratory | NB8.114A
| | Sample_contact_department | Hamon Center for Therapeutic Oncology Research
| | Sample_contact_institute | UT Southwestern Medical Center
| | Sample_contact_address | 5323 Harry Hines Blvd
| | Sample_contact_city | Dallas
| | Sample_contact_state | TX
| | Sample_contact_zip/postal_code | 75390-8593
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM783nnn/GSM783061/suppl/GSM783061.CEL.gz
| | Sample_series_id | GSE31548
| | Sample_series_id | GSE31908
| | Sample_data_row_count | 22645
| | |
|
GSM783062 | GPL97 |
|
16NL(B)
|
Normal lung
|
egfr status: Wild-type
Sex: F
smoking: Former
|
|
| Sample_geo_accession | GSM783062
| | Sample_status | Public on Sep 06 2011
| | Sample_submission_date | Aug 19 2011
| | Sample_last_update_date | Sep 06 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared according to standard Affymetrix protocol from 5 microgram total RNA
| | Sample_hyb_protocol | Following fragmentation, 20 microg of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A
| | Sample_data_processing | Quantile normalization and RMA were done with RMAExpress (http://rmaexpress.bmbolstad.com/)
| | Sample_platform_id | GPL97
| | Sample_contact_name | Luc,,Girard
| | Sample_contact_email | Luc.Girard@UTSouthwestern.edu
| | Sample_contact_laboratory | NB8.114A
| | Sample_contact_department | Hamon Center for Therapeutic Oncology Research
| | Sample_contact_institute | UT Southwestern Medical Center
| | Sample_contact_address | 5323 Harry Hines Blvd
| | Sample_contact_city | Dallas
| | Sample_contact_state | TX
| | Sample_contact_zip/postal_code | 75390-8593
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM783nnn/GSM783062/suppl/GSM783062.CEL.gz
| | Sample_series_id | GSE31548
| | Sample_series_id | GSE31908
| | Sample_data_row_count | 22645
| | |
|
GSM783063 | GPL97 |
|
20NL(B)
|
Normal lung
|
egfr status: Wild-type
Sex: M
smoking: Former
|
|
| Sample_geo_accession | GSM783063
| | Sample_status | Public on Sep 06 2011
| | Sample_submission_date | Aug 19 2011
| | Sample_last_update_date | Sep 06 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared according to standard Affymetrix protocol from 5 microgram total RNA
| | Sample_hyb_protocol | Following fragmentation, 20 microg of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A
| | Sample_data_processing | Quantile normalization and RMA were done with RMAExpress (http://rmaexpress.bmbolstad.com/)
| | Sample_platform_id | GPL97
| | Sample_contact_name | Luc,,Girard
| | Sample_contact_email | Luc.Girard@UTSouthwestern.edu
| | Sample_contact_laboratory | NB8.114A
| | Sample_contact_department | Hamon Center for Therapeutic Oncology Research
| | Sample_contact_institute | UT Southwestern Medical Center
| | Sample_contact_address | 5323 Harry Hines Blvd
| | Sample_contact_city | Dallas
| | Sample_contact_state | TX
| | Sample_contact_zip/postal_code | 75390-8593
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM783nnn/GSM783063/suppl/GSM783063.CEL.gz
| | Sample_series_id | GSE31548
| | Sample_series_id | GSE31908
| | Sample_data_row_count | 22645
| | |
|
GSM783064 | GPL97 |
|
21NL(B)
|
Normal lung
|
egfr status: Wild-type
age: 52
race: WNH
Sex: F
smoking: Current
|
|
| Sample_geo_accession | GSM783064
| | Sample_status | Public on Sep 06 2011
| | Sample_submission_date | Aug 19 2011
| | Sample_last_update_date | Sep 06 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared according to standard Affymetrix protocol from 5 microgram total RNA
| | Sample_hyb_protocol | Following fragmentation, 20 microg of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A
| | Sample_data_processing | Quantile normalization and RMA were done with RMAExpress (http://rmaexpress.bmbolstad.com/)
| | Sample_platform_id | GPL97
| | Sample_contact_name | Luc,,Girard
| | Sample_contact_email | Luc.Girard@UTSouthwestern.edu
| | Sample_contact_laboratory | NB8.114A
| | Sample_contact_department | Hamon Center for Therapeutic Oncology Research
| | Sample_contact_institute | UT Southwestern Medical Center
| | Sample_contact_address | 5323 Harry Hines Blvd
| | Sample_contact_city | Dallas
| | Sample_contact_state | TX
| | Sample_contact_zip/postal_code | 75390-8593
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM783nnn/GSM783064/suppl/GSM783064.CEL.gz
| | Sample_series_id | GSE31548
| | Sample_series_id | GSE31908
| | Sample_data_row_count | 22645
| | |
|
GSM783065 | GPL97 |
|
22NL(B)
|
Normal lung
|
egfr status: Wild-type
age: 62
race: WNH
Sex: M
smoking: Former
|
|
| Sample_geo_accession | GSM783065
| | Sample_status | Public on Sep 06 2011
| | Sample_submission_date | Aug 19 2011
| | Sample_last_update_date | Sep 06 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared according to standard Affymetrix protocol from 5 microgram total RNA
| | Sample_hyb_protocol | Following fragmentation, 20 microg of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A
| | Sample_data_processing | Quantile normalization and RMA were done with RMAExpress (http://rmaexpress.bmbolstad.com/)
| | Sample_platform_id | GPL97
| | Sample_contact_name | Luc,,Girard
| | Sample_contact_email | Luc.Girard@UTSouthwestern.edu
| | Sample_contact_laboratory | NB8.114A
| | Sample_contact_department | Hamon Center for Therapeutic Oncology Research
| | Sample_contact_institute | UT Southwestern Medical Center
| | Sample_contact_address | 5323 Harry Hines Blvd
| | Sample_contact_city | Dallas
| | Sample_contact_state | TX
| | Sample_contact_zip/postal_code | 75390-8593
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM783nnn/GSM783065/suppl/GSM783065.CEL.gz
| | Sample_series_id | GSE31548
| | Sample_series_id | GSE31908
| | Sample_data_row_count | 22645
| | |
|
GSM783066 | GPL97 |
|
27NL(B)
|
Normal lung
|
egfr status: Wild-type
age: 74
race: WNH
Sex: M
smoking: Former
|
|
| Sample_geo_accession | GSM783066
| | Sample_status | Public on Sep 06 2011
| | Sample_submission_date | Aug 19 2011
| | Sample_last_update_date | Sep 06 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared according to standard Affymetrix protocol from 5 microgram total RNA
| | Sample_hyb_protocol | Following fragmentation, 20 microg of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A
| | Sample_data_processing | Quantile normalization and RMA were done with RMAExpress (http://rmaexpress.bmbolstad.com/)
| | Sample_platform_id | GPL97
| | Sample_contact_name | Luc,,Girard
| | Sample_contact_email | Luc.Girard@UTSouthwestern.edu
| | Sample_contact_laboratory | NB8.114A
| | Sample_contact_department | Hamon Center for Therapeutic Oncology Research
| | Sample_contact_institute | UT Southwestern Medical Center
| | Sample_contact_address | 5323 Harry Hines Blvd
| | Sample_contact_city | Dallas
| | Sample_contact_state | TX
| | Sample_contact_zip/postal_code | 75390-8593
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM783nnn/GSM783066/suppl/GSM783066.CEL.gz
| | Sample_series_id | GSE31548
| | Sample_series_id | GSE31908
| | Sample_data_row_count | 22645
| | |
|
GSM783067 | GPL97 |
|
29NL(B)
|
Normal lung
|
egfr status: Wild-type
Sex: M
smoking: Former
|
|
| Sample_geo_accession | GSM783067
| | Sample_status | Public on Sep 06 2011
| | Sample_submission_date | Aug 19 2011
| | Sample_last_update_date | Sep 06 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared according to standard Affymetrix protocol from 5 microgram total RNA
| | Sample_hyb_protocol | Following fragmentation, 20 microg of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A
| | Sample_data_processing | Quantile normalization and RMA were done with RMAExpress (http://rmaexpress.bmbolstad.com/)
| | Sample_platform_id | GPL97
| | Sample_contact_name | Luc,,Girard
| | Sample_contact_email | Luc.Girard@UTSouthwestern.edu
| | Sample_contact_laboratory | NB8.114A
| | Sample_contact_department | Hamon Center for Therapeutic Oncology Research
| | Sample_contact_institute | UT Southwestern Medical Center
| | Sample_contact_address | 5323 Harry Hines Blvd
| | Sample_contact_city | Dallas
| | Sample_contact_state | TX
| | Sample_contact_zip/postal_code | 75390-8593
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM783nnn/GSM783067/suppl/GSM783067.CEL.gz
| | Sample_series_id | GSE31548
| | Sample_series_id | GSE31908
| | Sample_data_row_count | 22645
| | |
|
GSM783068 | GPL97 |
|
35NL(B)
|
Normal lung
|
egfr status: Wild-type
Sex: F
smoking: Former
|
|
| Sample_geo_accession | GSM783068
| | Sample_status | Public on Sep 06 2011
| | Sample_submission_date | Aug 19 2011
| | Sample_last_update_date | Sep 06 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared according to standard Affymetrix protocol from 5 microgram total RNA
| | Sample_hyb_protocol | Following fragmentation, 20 microg of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A
| | Sample_data_processing | Quantile normalization and RMA were done with RMAExpress (http://rmaexpress.bmbolstad.com/)
| | Sample_platform_id | GPL97
| | Sample_contact_name | Luc,,Girard
| | Sample_contact_email | Luc.Girard@UTSouthwestern.edu
| | Sample_contact_laboratory | NB8.114A
| | Sample_contact_department | Hamon Center for Therapeutic Oncology Research
| | Sample_contact_institute | UT Southwestern Medical Center
| | Sample_contact_address | 5323 Harry Hines Blvd
| | Sample_contact_city | Dallas
| | Sample_contact_state | TX
| | Sample_contact_zip/postal_code | 75390-8593
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM783nnn/GSM783068/suppl/GSM783068.CEL.gz
| | Sample_series_id | GSE31548
| | Sample_series_id | GSE31908
| | Sample_data_row_count | 22645
| | |
|
GSM783069 | GPL97 |
|
38NL(B)
|
Normal lung
|
egfr status: Wild-type
Sex: F
smoking: Never
|
|
| Sample_geo_accession | GSM783069
| | Sample_status | Public on Sep 06 2011
| | Sample_submission_date | Aug 19 2011
| | Sample_last_update_date | Sep 06 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared according to standard Affymetrix protocol from 5 microgram total RNA
| | Sample_hyb_protocol | Following fragmentation, 20 microg of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A
| | Sample_data_processing | Quantile normalization and RMA were done with RMAExpress (http://rmaexpress.bmbolstad.com/)
| | Sample_platform_id | GPL97
| | Sample_contact_name | Luc,,Girard
| | Sample_contact_email | Luc.Girard@UTSouthwestern.edu
| | Sample_contact_laboratory | NB8.114A
| | Sample_contact_department | Hamon Center for Therapeutic Oncology Research
| | Sample_contact_institute | UT Southwestern Medical Center
| | Sample_contact_address | 5323 Harry Hines Blvd
| | Sample_contact_city | Dallas
| | Sample_contact_state | TX
| | Sample_contact_zip/postal_code | 75390-8593
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM783nnn/GSM783069/suppl/GSM783069.CEL.gz
| | Sample_series_id | GSE31548
| | Sample_series_id | GSE31908
| | Sample_data_row_count | 22645
| | |
|
GSM783070 | GPL97 |
|
42NL(B)
|
Normal lung
|
egfr status: Wild-type
Sex: M
smoking: Former
|
|
| Sample_geo_accession | GSM783070
| | Sample_status | Public on Sep 06 2011
| | Sample_submission_date | Aug 19 2011
| | Sample_last_update_date | Sep 06 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared according to standard Affymetrix protocol from 5 microgram total RNA
| | Sample_hyb_protocol | Following fragmentation, 20 microg of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A
| | Sample_data_processing | Quantile normalization and RMA were done with RMAExpress (http://rmaexpress.bmbolstad.com/)
| | Sample_platform_id | GPL97
| | Sample_contact_name | Luc,,Girard
| | Sample_contact_email | Luc.Girard@UTSouthwestern.edu
| | Sample_contact_laboratory | NB8.114A
| | Sample_contact_department | Hamon Center for Therapeutic Oncology Research
| | Sample_contact_institute | UT Southwestern Medical Center
| | Sample_contact_address | 5323 Harry Hines Blvd
| | Sample_contact_city | Dallas
| | Sample_contact_state | TX
| | Sample_contact_zip/postal_code | 75390-8593
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM783nnn/GSM783070/suppl/GSM783070.CEL.gz
| | Sample_series_id | GSE31548
| | Sample_series_id | GSE31908
| | Sample_data_row_count | 22645
| | |
|
GSM783071 | GPL97 |
|
44NL(B)
|
Normal lung
|
egfr status: Wild-type
age: 76
race: WNH
Sex: F
smoking: Never
|
|
| Sample_geo_accession | GSM783071
| | Sample_status | Public on Sep 06 2011
| | Sample_submission_date | Aug 19 2011
| | Sample_last_update_date | Sep 06 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared according to standard Affymetrix protocol from 5 microgram total RNA
| | Sample_hyb_protocol | Following fragmentation, 20 microg of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A
| | Sample_data_processing | Quantile normalization and RMA were done with RMAExpress (http://rmaexpress.bmbolstad.com/)
| | Sample_platform_id | GPL97
| | Sample_contact_name | Luc,,Girard
| | Sample_contact_email | Luc.Girard@UTSouthwestern.edu
| | Sample_contact_laboratory | NB8.114A
| | Sample_contact_department | Hamon Center for Therapeutic Oncology Research
| | Sample_contact_institute | UT Southwestern Medical Center
| | Sample_contact_address | 5323 Harry Hines Blvd
| | Sample_contact_city | Dallas
| | Sample_contact_state | TX
| | Sample_contact_zip/postal_code | 75390-8593
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM783nnn/GSM783071/suppl/GSM783071.CEL.gz
| | Sample_series_id | GSE31548
| | Sample_series_id | GSE31908
| | Sample_data_row_count | 22645
| | |
|
GSM783072 | GPL97 |
|
48NL(B)
|
Normal lung
|
egfr status: Wild-type
age: 49
race: WNH
Sex: F
smoking: Never
|
|
| Sample_geo_accession | GSM783072
| | Sample_status | Public on Sep 06 2011
| | Sample_submission_date | Aug 19 2011
| | Sample_last_update_date | Sep 06 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared according to standard Affymetrix protocol from 5 microgram total RNA
| | Sample_hyb_protocol | Following fragmentation, 20 microg of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A
| | Sample_data_processing | Quantile normalization and RMA were done with RMAExpress (http://rmaexpress.bmbolstad.com/)
| | Sample_platform_id | GPL97
| | Sample_contact_name | Luc,,Girard
| | Sample_contact_email | Luc.Girard@UTSouthwestern.edu
| | Sample_contact_laboratory | NB8.114A
| | Sample_contact_department | Hamon Center for Therapeutic Oncology Research
| | Sample_contact_institute | UT Southwestern Medical Center
| | Sample_contact_address | 5323 Harry Hines Blvd
| | Sample_contact_city | Dallas
| | Sample_contact_state | TX
| | Sample_contact_zip/postal_code | 75390-8593
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM783nnn/GSM783072/suppl/GSM783072.CEL.gz
| | Sample_series_id | GSE31548
| | Sample_series_id | GSE31908
| | Sample_data_row_count | 22645
| | |
|
GSM783073 | GPL97 |
|
49NL(B)
|
Normal lung
|
egfr status: Wild-type
Sex: F
smoking: Former
|
|
| Sample_geo_accession | GSM783073
| | Sample_status | Public on Sep 06 2011
| | Sample_submission_date | Aug 19 2011
| | Sample_last_update_date | Sep 06 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared according to standard Affymetrix protocol from 5 microgram total RNA
| | Sample_hyb_protocol | Following fragmentation, 20 microg of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A
| | Sample_data_processing | Quantile normalization and RMA were done with RMAExpress (http://rmaexpress.bmbolstad.com/)
| | Sample_platform_id | GPL97
| | Sample_contact_name | Luc,,Girard
| | Sample_contact_email | Luc.Girard@UTSouthwestern.edu
| | Sample_contact_laboratory | NB8.114A
| | Sample_contact_department | Hamon Center for Therapeutic Oncology Research
| | Sample_contact_institute | UT Southwestern Medical Center
| | Sample_contact_address | 5323 Harry Hines Blvd
| | Sample_contact_city | Dallas
| | Sample_contact_state | TX
| | Sample_contact_zip/postal_code | 75390-8593
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM783nnn/GSM783073/suppl/GSM783073.CEL.gz
| | Sample_series_id | GSE31548
| | Sample_series_id | GSE31908
| | Sample_data_row_count | 22645
| | |
|
GSM783074 | GPL97 |
|
66NL(B)
|
Normal lung
|
egfr status: Wild-type
Sex: F
smoking: Former
|
|
| Sample_geo_accession | GSM783074
| | Sample_status | Public on Sep 06 2011
| | Sample_submission_date | Aug 19 2011
| | Sample_last_update_date | Sep 06 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared according to standard Affymetrix protocol from 5 microgram total RNA
| | Sample_hyb_protocol | Following fragmentation, 20 microg of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A
| | Sample_data_processing | Quantile normalization and RMA were done with RMAExpress (http://rmaexpress.bmbolstad.com/)
| | Sample_platform_id | GPL97
| | Sample_contact_name | Luc,,Girard
| | Sample_contact_email | Luc.Girard@UTSouthwestern.edu
| | Sample_contact_laboratory | NB8.114A
| | Sample_contact_department | Hamon Center for Therapeutic Oncology Research
| | Sample_contact_institute | UT Southwestern Medical Center
| | Sample_contact_address | 5323 Harry Hines Blvd
| | Sample_contact_city | Dallas
| | Sample_contact_state | TX
| | Sample_contact_zip/postal_code | 75390-8593
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM783nnn/GSM783074/suppl/GSM783074.CEL.gz
| | Sample_series_id | GSE31548
| | Sample_series_id | GSE31908
| | Sample_data_row_count | 22645
| | |
|
GSM783075 | GPL97 |
|
74NL(B)
|
Normal lung
|
egfr status: Wild-type
Sex: F
smoking: Current
|
|
| Sample_geo_accession | GSM783075
| | Sample_status | Public on Sep 06 2011
| | Sample_submission_date | Aug 19 2011
| | Sample_last_update_date | Sep 06 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared according to standard Affymetrix protocol from 5 microgram total RNA
| | Sample_hyb_protocol | Following fragmentation, 20 microg of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A
| | Sample_data_processing | Quantile normalization and RMA were done with RMAExpress (http://rmaexpress.bmbolstad.com/)
| | Sample_platform_id | GPL97
| | Sample_contact_name | Luc,,Girard
| | Sample_contact_email | Luc.Girard@UTSouthwestern.edu
| | Sample_contact_laboratory | NB8.114A
| | Sample_contact_department | Hamon Center for Therapeutic Oncology Research
| | Sample_contact_institute | UT Southwestern Medical Center
| | Sample_contact_address | 5323 Harry Hines Blvd
| | Sample_contact_city | Dallas
| | Sample_contact_state | TX
| | Sample_contact_zip/postal_code | 75390-8593
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM783nnn/GSM783075/suppl/GSM783075.CEL.gz
| | Sample_series_id | GSE31548
| | Sample_series_id | GSE31908
| | Sample_data_row_count | 22645
| | |
|
GSM783076 | GPL97 |
|
78NL(B)
|
Normal lung
|
egfr status: Wild-type
Sex: F
smoking: Former
|
|
| Sample_geo_accession | GSM783076
| | Sample_status | Public on Sep 06 2011
| | Sample_submission_date | Aug 19 2011
| | Sample_last_update_date | Sep 06 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared according to standard Affymetrix protocol from 5 microgram total RNA
| | Sample_hyb_protocol | Following fragmentation, 20 microg of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A
| | Sample_data_processing | Quantile normalization and RMA were done with RMAExpress (http://rmaexpress.bmbolstad.com/)
| | Sample_platform_id | GPL97
| | Sample_contact_name | Luc,,Girard
| | Sample_contact_email | Luc.Girard@UTSouthwestern.edu
| | Sample_contact_laboratory | NB8.114A
| | Sample_contact_department | Hamon Center for Therapeutic Oncology Research
| | Sample_contact_institute | UT Southwestern Medical Center
| | Sample_contact_address | 5323 Harry Hines Blvd
| | Sample_contact_city | Dallas
| | Sample_contact_state | TX
| | Sample_contact_zip/postal_code | 75390-8593
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM783nnn/GSM783076/suppl/GSM783076.CEL.gz
| | Sample_series_id | GSE31548
| | Sample_series_id | GSE31908
| | Sample_data_row_count | 22645
| | |
|
GSM783077 | GPL97 |
|
82NL(B)
|
Normal lung
|
egfr status: Wild-type
Sex: F
smoking: Former
|
|
| Sample_geo_accession | GSM783077
| | Sample_status | Public on Sep 06 2011
| | Sample_submission_date | Aug 19 2011
| | Sample_last_update_date | Sep 06 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared according to standard Affymetrix protocol from 5 microgram total RNA
| | Sample_hyb_protocol | Following fragmentation, 20 microg of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A
| | Sample_data_processing | Quantile normalization and RMA were done with RMAExpress (http://rmaexpress.bmbolstad.com/)
| | Sample_platform_id | GPL97
| | Sample_contact_name | Luc,,Girard
| | Sample_contact_email | Luc.Girard@UTSouthwestern.edu
| | Sample_contact_laboratory | NB8.114A
| | Sample_contact_department | Hamon Center for Therapeutic Oncology Research
| | Sample_contact_institute | UT Southwestern Medical Center
| | Sample_contact_address | 5323 Harry Hines Blvd
| | Sample_contact_city | Dallas
| | Sample_contact_state | TX
| | Sample_contact_zip/postal_code | 75390-8593
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM783nnn/GSM783077/suppl/GSM783077.CEL.gz
| | Sample_series_id | GSE31548
| | Sample_series_id | GSE31908
| | Sample_data_row_count | 22645
| | |
|
GSM783078 | GPL97 |
|
83NL(B)
|
Normal lung
|
egfr status: Wild-type
age: 74
race: WNH
Sex: F
smoking: Never
|
|
| Sample_geo_accession | GSM783078
| | Sample_status | Public on Sep 06 2011
| | Sample_submission_date | Aug 19 2011
| | Sample_last_update_date | Sep 06 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared according to standard Affymetrix protocol from 5 microgram total RNA
| | Sample_hyb_protocol | Following fragmentation, 20 microg of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A
| | Sample_data_processing | Quantile normalization and RMA were done with RMAExpress (http://rmaexpress.bmbolstad.com/)
| | Sample_platform_id | GPL97
| | Sample_contact_name | Luc,,Girard
| | Sample_contact_email | Luc.Girard@UTSouthwestern.edu
| | Sample_contact_laboratory | NB8.114A
| | Sample_contact_department | Hamon Center for Therapeutic Oncology Research
| | Sample_contact_institute | UT Southwestern Medical Center
| | Sample_contact_address | 5323 Harry Hines Blvd
| | Sample_contact_city | Dallas
| | Sample_contact_state | TX
| | Sample_contact_zip/postal_code | 75390-8593
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM783nnn/GSM783078/suppl/GSM783078.CEL.gz
| | Sample_series_id | GSE31548
| | Sample_series_id | GSE31908
| | Sample_data_row_count | 22645
| | |
|
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| |
Make groups for comparisons |
(2 groups will be compared at a time) |
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| Select GSMs and click on "Add groups" |
Enter the group name here: |
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