Search results for the GEO ID: GSE31595  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM782671 | GPL570 |
|
Colon_R06_2361
|
Colon adenocarcinoma
|
age: 65
gender: Female
ethnicity: Caucasian
tumor location: right colon
tnm-stage: III
histology: adenocarcinoma
grade: Moderate diff.
number of lymphnodes resected: 17
adjuvant chemotherapy: yes
relapse free survival time: 47.80 month
recurrence: no
death: No
|
|
| Sample_geo_accession | GSM782671
| | Sample_status | Public on Sep 01 2011
| | Sample_submission_date | Aug 19 2011
| | Sample_last_update_date | Nov 29 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_biomaterial_provider_ch1 | Roskilde Hospital and Department of Cellular and Molecular Medicine, University of Copenhagen
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was extracted using mirVana® miRNA isolation Kit (Ambion, Applied Biosystems, USA) according to the manufacturers protocol.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocols
| | Sample_hyb_protocol | Standard Affymetrix protocols
| | Sample_scan_protocol | Standard Affymetrix protocols
| | Sample_data_processing | The processing and analysis of expression data were performed using the statistical software R and Bioconductor. For all Affymetrix CEL files the background were corrected and the expression were normalized using robust multiarray average (RMA).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Morten,,Thorsteinsson
| | Sample_contact_email | moth@regionsjaelland.dk
| | Sample_contact_phone | +45 61276425
| | Sample_contact_fax | +45 47323009
| | Sample_contact_department | Department of Surgery
| | Sample_contact_institute | Roskilde Hospital, University of Copenhagen
| | Sample_contact_address | Koegevej 7-13
| | Sample_contact_city | Roskilde
| | Sample_contact_zip/postal_code | 4000
| | Sample_contact_country | Denmark
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM782nnn/GSM782671/suppl/GSM782671.CEL.gz
| | Sample_series_id | GSE31595
| | Sample_data_row_count | 54675
| | |
|
GSM782674 | GPL570 |
|
Colon_R09_2362
|
Colon adenocarcinoma
|
age: 79
gender: Male
ethnicity: Caucasian
tumor location: left colon
tnm-stage: II
histology: adenocarcinoma
grade: moderately diff.
number of lymphnodes resected: 15
adjuvant chemotherapy: no
relapse free survival time: 48.45 month
recurrence: no
death: No
|
|
| Sample_geo_accession | GSM782674
| | Sample_status | Public on Sep 01 2011
| | Sample_submission_date | Aug 19 2011
| | Sample_last_update_date | Nov 29 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_biomaterial_provider_ch1 | Roskilde Hospital and Department of Cellular and Molecular Medicine, University of Copenhagen
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was extracted using mirVana® miRNA isolation Kit (Ambion, Applied Biosystems, USA) according to the manufacturers protocol.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocols
| | Sample_hyb_protocol | Standard Affymetrix protocols
| | Sample_scan_protocol | Standard Affymetrix protocols
| | Sample_data_processing | The processing and analysis of expression data were performed using the statistical software R and Bioconductor. For all Affymetrix CEL files the background were corrected and the expression were normalized using robust multiarray average (RMA).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Morten,,Thorsteinsson
| | Sample_contact_email | moth@regionsjaelland.dk
| | Sample_contact_phone | +45 61276425
| | Sample_contact_fax | +45 47323009
| | Sample_contact_department | Department of Surgery
| | Sample_contact_institute | Roskilde Hospital, University of Copenhagen
| | Sample_contact_address | Koegevej 7-13
| | Sample_contact_city | Roskilde
| | Sample_contact_zip/postal_code | 4000
| | Sample_contact_country | Denmark
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM782nnn/GSM782674/suppl/GSM782674.CEL.gz
| | Sample_series_id | GSE31595
| | Sample_data_row_count | 54675
| | |
|
GSM784850 | GPL570 |
|
Colon_R14_2363
|
Colon adenocarcinoma
|
age: 56
gender: female
ethnicity: caucasian
tumor location: left colon
tnm-stage: II
histology: adenocarcinoma
grade: well diff.
number of lymphnodes resected: 14
adjuvant chemotherapy: no
relapse free survival time: 48.53 month
recurrence: no
death: no
|
|
| Sample_geo_accession | GSM784850
| | Sample_status | Public on Sep 01 2011
| | Sample_submission_date | Aug 23 2011
| | Sample_last_update_date | Nov 29 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_biomaterial_provider_ch1 | Roskilde Hospital and Department of Cellular and Molecular Medicine, University of Copenhagen
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was extracted using mirVana® miRNA isolation Kit (Ambion, Applied Biosystems, USA) according to the manufacturers protocol.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocols.
| | Sample_hyb_protocol | Standard Affymetrix protocols.
| | Sample_scan_protocol | Standard Affymetrix protocols.
| | Sample_data_processing | The processing and analysis of expression data were performed using the statistical software R and Bioconductor. For all Affymetrix CEL files the background were corrected and the expression were normalized using robust multiarray average (RMA).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Morten,,Thorsteinsson
| | Sample_contact_email | moth@regionsjaelland.dk
| | Sample_contact_phone | +45 61276425
| | Sample_contact_fax | +45 47323009
| | Sample_contact_department | Department of Surgery
| | Sample_contact_institute | Roskilde Hospital, University of Copenhagen
| | Sample_contact_address | Koegevej 7-13
| | Sample_contact_city | Roskilde
| | Sample_contact_zip/postal_code | 4000
| | Sample_contact_country | Denmark
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM784nnn/GSM784850/suppl/GSM784850.CEL.gz
| | Sample_series_id | GSE31595
| | Sample_data_row_count | 54675
| | |
|
GSM784851 | GPL570 |
|
Colon_R15_2364
|
Colon adenocarcinoma
|
age: 72
gender: female
ethnicity: caucasian
tumor location: right colon
tnm-stage: III
histology: adenocarcinoma
grade: poor diff.
number of lymphnodes resected: 12
adjuvant chemotherapy: yes
relapse free survival time: 5.29 month
recurrence: yes
death: yes
|
|
| Sample_geo_accession | GSM784851
| | Sample_status | Public on Sep 01 2011
| | Sample_submission_date | Aug 23 2011
| | Sample_last_update_date | Nov 29 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_biomaterial_provider_ch1 | Roskilde Hospital and Department of Cellular and Molecular Medicine, University of Copenhagen
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was extracted using mirVana® miRNA isolation Kit (Ambion, Applied Biosystems, USA) according to the manufacturers protocol.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocols.
| | Sample_hyb_protocol | Standard Affymetrix protocols.
| | Sample_scan_protocol | Standard Affymetrix protocols.
| | Sample_data_processing | The processing and analysis of expression data were performed using the statistical software R and Bioconductor. For all Affymetrix CEL files the background were corrected and the expression were normalized using robust multiarray average (RMA).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Morten,,Thorsteinsson
| | Sample_contact_email | moth@regionsjaelland.dk
| | Sample_contact_phone | +45 61276425
| | Sample_contact_fax | +45 47323009
| | Sample_contact_department | Department of Surgery
| | Sample_contact_institute | Roskilde Hospital, University of Copenhagen
| | Sample_contact_address | Koegevej 7-13
| | Sample_contact_city | Roskilde
| | Sample_contact_zip/postal_code | 4000
| | Sample_contact_country | Denmark
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM784nnn/GSM784851/suppl/GSM784851.CEL.gz
| | Sample_series_id | GSE31595
| | Sample_data_row_count | 54675
| | |
|
GSM784852 | GPL570 |
|
Colon_R18_1665
|
Colon adenocarcinoma
|
age: 79
gender: female
ethnicity: caucasian
tumor location: left colon
tnm-stage: II
histology: adenocarcinoma
grade: well diff.
number of lymphnodes resected: 22
adjuvant chemotherapy: no
relapse free survival time: 28.96 month
recurrence: yes
death: no
|
|
| Sample_geo_accession | GSM784852
| | Sample_status | Public on Sep 01 2011
| | Sample_submission_date | Aug 23 2011
| | Sample_last_update_date | Nov 29 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_biomaterial_provider_ch1 | Roskilde Hospital and Department of Cellular and Molecular Medicine, University of Copenhagen
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was extracted using mirVana® miRNA isolation Kit (Ambion, Applied Biosystems, USA) according to the manufacturers protocol.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocols.
| | Sample_hyb_protocol | Standard Affymetrix protocols.
| | Sample_scan_protocol | Standard Affymetrix protocols.
| | Sample_data_processing | The processing and analysis of expression data were performed using the statistical software R and Bioconductor. For all Affymetrix CEL files the background were corrected and the expression were normalized using robust multiarray average (RMA).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Morten,,Thorsteinsson
| | Sample_contact_email | moth@regionsjaelland.dk
| | Sample_contact_phone | +45 61276425
| | Sample_contact_fax | +45 47323009
| | Sample_contact_department | Department of Surgery
| | Sample_contact_institute | Roskilde Hospital, University of Copenhagen
| | Sample_contact_address | Koegevej 7-13
| | Sample_contact_city | Roskilde
| | Sample_contact_zip/postal_code | 4000
| | Sample_contact_country | Denmark
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM784nnn/GSM784852/suppl/GSM784852.CEL.gz
| | Sample_series_id | GSE31595
| | Sample_data_row_count | 54675
| | |
|
GSM784853 | GPL570 |
|
Colon_R21_1667
|
Colon adenocarcinoma
|
age: 68
gender: female
ethnicity: caucasian
tumor location: left colon
tnm-stage: II
histology: adenocarcinoma
grade: moderately diff.
number of lymphnodes resected: 17
adjuvant chemotherapy: no
relapse free survival time: 41.03 month
recurrence: no
death: no
|
|
| Sample_geo_accession | GSM784853
| | Sample_status | Public on Sep 01 2011
| | Sample_submission_date | Aug 23 2011
| | Sample_last_update_date | Nov 29 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_biomaterial_provider_ch1 | Roskilde Hospital and Department of Cellular and Molecular Medicine, University of Copenhagen
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was extracted using mirVana® miRNA isolation Kit (Ambion, Applied Biosystems, USA) according to the manufacturers protocol.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocols.
| | Sample_hyb_protocol | Standard Affymetrix protocols.
| | Sample_scan_protocol | Standard Affymetrix protocols.
| | Sample_data_processing | The processing and analysis of expression data were performed using the statistical software R and Bioconductor. For all Affymetrix CEL files the background were corrected and the expression were normalized using robust multiarray average (RMA).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Morten,,Thorsteinsson
| | Sample_contact_email | moth@regionsjaelland.dk
| | Sample_contact_phone | +45 61276425
| | Sample_contact_fax | +45 47323009
| | Sample_contact_department | Department of Surgery
| | Sample_contact_institute | Roskilde Hospital, University of Copenhagen
| | Sample_contact_address | Koegevej 7-13
| | Sample_contact_city | Roskilde
| | Sample_contact_zip/postal_code | 4000
| | Sample_contact_country | Denmark
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM784nnn/GSM784853/suppl/GSM784853.CEL.gz
| | Sample_series_id | GSE31595
| | Sample_data_row_count | 54675
| | |
|
GSM784854 | GPL570 |
|
Colon_R22_1662
|
Colon adenocarcinoma
|
age: 71
gender: male
ethnicity: caucasian
tumor location: right colon
tnm-stage: II
histology: adenocarcinoma
grade: well diff.
number of lymphnodes resected: 30
adjuvant chemotherapy: no
relapse free survival time: 38.73 month
recurrence: no
death: no
|
|
| Sample_geo_accession | GSM784854
| | Sample_status | Public on Sep 01 2011
| | Sample_submission_date | Aug 23 2011
| | Sample_last_update_date | Nov 29 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_biomaterial_provider_ch1 | Roskilde Hospital and Department of Cellular and Molecular Medicine, University of Copenhagen
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was extracted using mirVana® miRNA isolation Kit (Ambion, Applied Biosystems, USA) according to the manufacturers protocol.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocols.
| | Sample_hyb_protocol | Standard Affymetrix protocols.
| | Sample_scan_protocol | Standard Affymetrix protocols.
| | Sample_data_processing | The processing and analysis of expression data were performed using the statistical software R and Bioconductor. For all Affymetrix CEL files the background were corrected and the expression were normalized using robust multiarray average (RMA).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Morten,,Thorsteinsson
| | Sample_contact_email | moth@regionsjaelland.dk
| | Sample_contact_phone | +45 61276425
| | Sample_contact_fax | +45 47323009
| | Sample_contact_department | Department of Surgery
| | Sample_contact_institute | Roskilde Hospital, University of Copenhagen
| | Sample_contact_address | Koegevej 7-13
| | Sample_contact_city | Roskilde
| | Sample_contact_zip/postal_code | 4000
| | Sample_contact_country | Denmark
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM784nnn/GSM784854/suppl/GSM784854.CEL.gz
| | Sample_series_id | GSE31595
| | Sample_data_row_count | 54675
| | |
|
GSM784855 | GPL570 |
|
Colon_R25_1668
|
Colon adenocarcinoma
|
age: 71
gender: female
ethnicity: caucasian
tumor location: left colon
tnm-stage: III
histology: adenocarcinoma
grade: moderately diff.
number of lymphnodes resected: 10
adjuvant chemotherapy: no
relapse free survival time: 36.23 month
recurrence: no
death: no
|
|
| Sample_geo_accession | GSM784855
| | Sample_status | Public on Sep 01 2011
| | Sample_submission_date | Aug 23 2011
| | Sample_last_update_date | Nov 29 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_biomaterial_provider_ch1 | Roskilde Hospital and Department of Cellular and Molecular Medicine, University of Copenhagen
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was extracted using mirVana® miRNA isolation Kit (Ambion, Applied Biosystems, USA) according to the manufacturers protocol.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocols.
| | Sample_hyb_protocol | Standard Affymetrix protocols.
| | Sample_scan_protocol | Standard Affymetrix protocols.
| | Sample_data_processing | The processing and analysis of expression data were performed using the statistical software R and Bioconductor. For all Affymetrix CEL files the background were corrected and the expression were normalized using robust multiarray average (RMA).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Morten,,Thorsteinsson
| | Sample_contact_email | moth@regionsjaelland.dk
| | Sample_contact_phone | +45 61276425
| | Sample_contact_fax | +45 47323009
| | Sample_contact_department | Department of Surgery
| | Sample_contact_institute | Roskilde Hospital, University of Copenhagen
| | Sample_contact_address | Koegevej 7-13
| | Sample_contact_city | Roskilde
| | Sample_contact_zip/postal_code | 4000
| | Sample_contact_country | Denmark
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM784nnn/GSM784855/suppl/GSM784855.CEL.gz
| | Sample_series_id | GSE31595
| | Sample_data_row_count | 54675
| | |
|
GSM784856 | GPL570 |
|
Colon_R26_1671
|
Colon adenocarcinoma
|
age: 68
gender: female
ethnicity: caucasian
tumor location: left colon
tnm-stage: III
histology: adenocarcinoma
grade: moderately diff.
number of lymphnodes resected: 18
adjuvant chemotherapy: no
relapse free survival time: 36.10 month
recurrence: no
death: no
|
|
| Sample_geo_accession | GSM784856
| | Sample_status | Public on Sep 01 2011
| | Sample_submission_date | Aug 23 2011
| | Sample_last_update_date | Nov 29 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_biomaterial_provider_ch1 | Roskilde Hospital and Department of Cellular and Molecular Medicine, University of Copenhagen
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was extracted using mirVana® miRNA isolation Kit (Ambion, Applied Biosystems, USA) according to the manufacturers protocol.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocols.
| | Sample_hyb_protocol | Standard Affymetrix protocols.
| | Sample_scan_protocol | Standard Affymetrix protocols.
| | Sample_data_processing | The processing and analysis of expression data were performed using the statistical software R and Bioconductor. For all Affymetrix CEL files the background were corrected and the expression were normalized using robust multiarray average (RMA).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Morten,,Thorsteinsson
| | Sample_contact_email | moth@regionsjaelland.dk
| | Sample_contact_phone | +45 61276425
| | Sample_contact_fax | +45 47323009
| | Sample_contact_department | Department of Surgery
| | Sample_contact_institute | Roskilde Hospital, University of Copenhagen
| | Sample_contact_address | Koegevej 7-13
| | Sample_contact_city | Roskilde
| | Sample_contact_zip/postal_code | 4000
| | Sample_contact_country | Denmark
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM784nnn/GSM784856/suppl/GSM784856.CEL.gz
| | Sample_series_id | GSE31595
| | Sample_data_row_count | 54675
| | |
|
GSM784857 | GPL570 |
|
Colon_R27_1673
|
Colon adenocarcinoma
|
age: 87
gender: female
ethnicity: caucasian
tumor location: right colon
tnm-stage: II
histology: adenocarcinoma
grade: well diff.
number of lymphnodes resected: 12
adjuvant chemotherapy: no
relapse free survival time: 29.88 month
recurrence: no
death: yes
|
|
| Sample_geo_accession | GSM784857
| | Sample_status | Public on Sep 01 2011
| | Sample_submission_date | Aug 23 2011
| | Sample_last_update_date | Nov 29 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_biomaterial_provider_ch1 | Roskilde Hospital and Department of Cellular and Molecular Medicine, University of Copenhagen
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was extracted using mirVana® miRNA isolation Kit (Ambion, Applied Biosystems, USA) according to the manufacturers protocol.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocols.
| | Sample_hyb_protocol | Standard Affymetrix protocols.
| | Sample_scan_protocol | Standard Affymetrix protocols.
| | Sample_data_processing | The processing and analysis of expression data were performed using the statistical software R and Bioconductor. For all Affymetrix CEL files the background were corrected and the expression were normalized using robust multiarray average (RMA).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Morten,,Thorsteinsson
| | Sample_contact_email | moth@regionsjaelland.dk
| | Sample_contact_phone | +45 61276425
| | Sample_contact_fax | +45 47323009
| | Sample_contact_department | Department of Surgery
| | Sample_contact_institute | Roskilde Hospital, University of Copenhagen
| | Sample_contact_address | Koegevej 7-13
| | Sample_contact_city | Roskilde
| | Sample_contact_zip/postal_code | 4000
| | Sample_contact_country | Denmark
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM784nnn/GSM784857/suppl/GSM784857.CEL.gz
| | Sample_series_id | GSE31595
| | Sample_data_row_count | 54675
| | |
|
GSM784858 | GPL570 |
|
Colon_R29_1663
|
Colon adenocarcinoma
|
age: 51
gender: female
ethnicity: caucasian
tumor location: left colon
tnm-stage: II
histology: adenocarcinoma
grade: moderately diff.
number of lymphnodes resected: 16
adjuvant chemotherapy: no
relapse free survival time: 38.30 month
recurrence: no
death: no
|
|
| Sample_geo_accession | GSM784858
| | Sample_status | Public on Sep 01 2011
| | Sample_submission_date | Aug 23 2011
| | Sample_last_update_date | Nov 29 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_biomaterial_provider_ch1 | Roskilde Hospital and Department of Cellular and Molecular Medicine, University of Copenhagen
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was extracted using mirVana® miRNA isolation Kit (Ambion, Applied Biosystems, USA) according to the manufacturers protocol.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocols.
| | Sample_hyb_protocol | Standard Affymetrix protocols.
| | Sample_scan_protocol | Standard Affymetrix protocols.
| | Sample_data_processing | The processing and analysis of expression data were performed using the statistical software R and Bioconductor. For all Affymetrix CEL files the background were corrected and the expression were normalized using robust multiarray average (RMA).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Morten,,Thorsteinsson
| | Sample_contact_email | moth@regionsjaelland.dk
| | Sample_contact_phone | +45 61276425
| | Sample_contact_fax | +45 47323009
| | Sample_contact_department | Department of Surgery
| | Sample_contact_institute | Roskilde Hospital, University of Copenhagen
| | Sample_contact_address | Koegevej 7-13
| | Sample_contact_city | Roskilde
| | Sample_contact_zip/postal_code | 4000
| | Sample_contact_country | Denmark
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM784nnn/GSM784858/suppl/GSM784858.CEL.gz
| | Sample_series_id | GSE31595
| | Sample_data_row_count | 54675
| | |
|
GSM784860 | GPL570 |
|
Colon_R31_2365
|
Colon adenocarcinoma
|
age: 64
gender: male
ethnicity: caucasian
tumor location: right colon
tnm-stage: II
histology: adenocarcinoma
grade: moderately diff.
number of lymphnodes resected: 16
adjuvant chemotherapy: no
relapse free survival time: 36.03 month
recurrence: no
death: no
|
|
| Sample_geo_accession | GSM784860
| | Sample_status | Public on Sep 01 2011
| | Sample_submission_date | Aug 23 2011
| | Sample_last_update_date | Nov 29 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_biomaterial_provider_ch1 | Roskilde Hospital and Department of Cellular and Molecular Medicine, University of Copenhagen
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was extracted using mirVana® miRNA isolation Kit (Ambion, Applied Biosystems, USA) according to the manufacturers protocol.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocols.
| | Sample_hyb_protocol | Standard Affymetrix protocols.
| | Sample_scan_protocol | Standard Affymetrix protocols.
| | Sample_data_processing | The processing and analysis of expression data were performed using the statistical software R and Bioconductor. For all Affymetrix CEL files the background were corrected and the expression were normalized using robust multiarray average (RMA).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Morten,,Thorsteinsson
| | Sample_contact_email | moth@regionsjaelland.dk
| | Sample_contact_phone | +45 61276425
| | Sample_contact_fax | +45 47323009
| | Sample_contact_department | Department of Surgery
| | Sample_contact_institute | Roskilde Hospital, University of Copenhagen
| | Sample_contact_address | Koegevej 7-13
| | Sample_contact_city | Roskilde
| | Sample_contact_zip/postal_code | 4000
| | Sample_contact_country | Denmark
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM784nnn/GSM784860/suppl/GSM784860.CEL.gz
| | Sample_series_id | GSE31595
| | Sample_data_row_count | 54675
| | |
|
GSM784862 | GPL570 |
|
Colon_R36_2366
|
Colon adenocarcinoma
|
age: 66
gender: male
ethnicity: caucasian
tumor location: right colon
tnm-stage: III
histology: adenocarcinoma
grade: poor diff.
number of lymphnodes resected: 20
adjuvant chemotherapy: no
relapse free survival time: 38.33 month
recurrence: no
death: no
|
|
| Sample_geo_accession | GSM784862
| | Sample_status | Public on Sep 01 2011
| | Sample_submission_date | Aug 23 2011
| | Sample_last_update_date | Nov 29 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_biomaterial_provider_ch1 | Roskilde Hospital and Department of Cellular and Molecular Medicine, University of Copenhagen
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was extracted using mirVana® miRNA isolation Kit (Ambion, Applied Biosystems, USA) according to the manufacturers protocol.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocols.
| | Sample_hyb_protocol | Standard Affymetrix protocols.
| | Sample_scan_protocol | Standard Affymetrix protocols.
| | Sample_data_processing | The processing and analysis of expression data were performed using the statistical software R and Bioconductor. For all Affymetrix CEL files the background were corrected and the expression were normalized using robust multiarray average (RMA).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Morten,,Thorsteinsson
| | Sample_contact_email | moth@regionsjaelland.dk
| | Sample_contact_phone | +45 61276425
| | Sample_contact_fax | +45 47323009
| | Sample_contact_department | Department of Surgery
| | Sample_contact_institute | Roskilde Hospital, University of Copenhagen
| | Sample_contact_address | Koegevej 7-13
| | Sample_contact_city | Roskilde
| | Sample_contact_zip/postal_code | 4000
| | Sample_contact_country | Denmark
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM784nnn/GSM784862/suppl/GSM784862.CEL.gz
| | Sample_series_id | GSE31595
| | Sample_data_row_count | 54675
| | |
|
GSM784865 | GPL570 |
|
Colon_R40_2367
|
Colon adenocarcinoma
|
age: 62
gender: male
ethnicity: caucasian
tumor location: right colon
tnm-stage: III
histology: adenocarcinoma
grade: poor diff.
number of lymphnodes resected: 17
adjuvant chemotherapy: yes
relapse free survival time: 38.92 month
recurrence: no
death: no
|
|
| Sample_geo_accession | GSM784865
| | Sample_status | Public on Sep 01 2011
| | Sample_submission_date | Aug 23 2011
| | Sample_last_update_date | Nov 29 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_biomaterial_provider_ch1 | Roskilde Hospital and Department of Cellular and Molecular Medicine, University of Copenhagen
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was extracted using mirVana® miRNA isolation Kit (Ambion, Applied Biosystems, USA) according to the manufacturers protocol.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocols.
| | Sample_hyb_protocol | Standard Affymetrix protocols.
| | Sample_scan_protocol | Standard Affymetrix protocols.
| | Sample_data_processing | The processing and analysis of expression data were performed using the statistical software R and Bioconductor. For all Affymetrix CEL files the background were corrected and the expression were normalized using robust multiarray average (RMA).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Morten,,Thorsteinsson
| | Sample_contact_email | moth@regionsjaelland.dk
| | Sample_contact_phone | +45 61276425
| | Sample_contact_fax | +45 47323009
| | Sample_contact_department | Department of Surgery
| | Sample_contact_institute | Roskilde Hospital, University of Copenhagen
| | Sample_contact_address | Koegevej 7-13
| | Sample_contact_city | Roskilde
| | Sample_contact_zip/postal_code | 4000
| | Sample_contact_country | Denmark
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM784nnn/GSM784865/suppl/GSM784865.CEL.gz
| | Sample_series_id | GSE31595
| | Sample_data_row_count | 54675
| | |
|
GSM784867 | GPL570 |
|
Colon_R41_1960
|
Colon adenocarcinoma
|
age: 79
gender: male
ethnicity: caucasian
tumor location: right colon
tnm-stage: II
histology: adenocarcinoma
grade: moderately diff.
number of lymphnodes resected: 14
adjuvant chemotherapy: no
relapse free survival time: 40.11 month
recurrence: no
death: no
|
|
| Sample_geo_accession | GSM784867
| | Sample_status | Public on Sep 01 2011
| | Sample_submission_date | Aug 23 2011
| | Sample_last_update_date | Nov 29 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_biomaterial_provider_ch1 | Roskilde Hospital and Department of Cellular and Molecular Medicine, University of Copenhagen
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was extracted using mirVana® miRNA isolation Kit (Ambion, Applied Biosystems, USA) according to the manufacturers protocol.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocols.
| | Sample_hyb_protocol | Standard Affymetrix protocols.
| | Sample_scan_protocol | Standard Affymetrix protocols.
| | Sample_data_processing | The processing and analysis of expression data were performed using the statistical software R and Bioconductor. For all Affymetrix CEL files the background were corrected and the expression were normalized using robust multiarray average (RMA).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Morten,,Thorsteinsson
| | Sample_contact_email | moth@regionsjaelland.dk
| | Sample_contact_phone | +45 61276425
| | Sample_contact_fax | +45 47323009
| | Sample_contact_department | Department of Surgery
| | Sample_contact_institute | Roskilde Hospital, University of Copenhagen
| | Sample_contact_address | Koegevej 7-13
| | Sample_contact_city | Roskilde
| | Sample_contact_zip/postal_code | 4000
| | Sample_contact_country | Denmark
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM784nnn/GSM784867/suppl/GSM784867.CEL.gz
| | Sample_series_id | GSE31595
| | Sample_data_row_count | 54675
| | |
|
GSM784871 | GPL570 |
|
Colon_R42_1961
|
Colon adenocarcinoma
|
age: 65
gender: female
ethnicity: caucasian
tumor location: right colon
tnm-stage: II
histology: adenocarcinoma
grade: well diff.
number of lymphnodes resected: 19
adjuvant chemotherapy: no
relapse free survival time: 36.36 month
recurrence: no
death: no
|
|
| Sample_geo_accession | GSM784871
| | Sample_status | Public on Sep 01 2011
| | Sample_submission_date | Aug 23 2011
| | Sample_last_update_date | Nov 29 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_biomaterial_provider_ch1 | Roskilde Hospital and Department of Cellular and Molecular Medicine, University of Copenhagen
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was extracted using mirVana® miRNA isolation Kit (Ambion, Applied Biosystems, USA) according to the manufacturers protocol.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocols.
| | Sample_hyb_protocol | Standard Affymetrix protocols.
| | Sample_scan_protocol | Standard Affymetrix protocols.
| | Sample_data_processing | The processing and analysis of expression data were performed using the statistical software R and Bioconductor. For all Affymetrix CEL files the background were corrected and the expression were normalized using robust multiarray average (RMA).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Morten,,Thorsteinsson
| | Sample_contact_email | moth@regionsjaelland.dk
| | Sample_contact_phone | +45 61276425
| | Sample_contact_fax | +45 47323009
| | Sample_contact_department | Department of Surgery
| | Sample_contact_institute | Roskilde Hospital, University of Copenhagen
| | Sample_contact_address | Koegevej 7-13
| | Sample_contact_city | Roskilde
| | Sample_contact_zip/postal_code | 4000
| | Sample_contact_country | Denmark
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM784nnn/GSM784871/suppl/GSM784871.CEL.gz
| | Sample_series_id | GSE31595
| | Sample_data_row_count | 54675
| | |
|
GSM784873 | GPL570 |
|
Colon_R43_1962
|
Colon adenocarcinoma
|
age: 74
gender: female
ethnicity: caucasian
tumor location: right colon
tnm-stage: III
histology: mucinous adenocarcinoma
number of lymphnodes resected: 18
adjuvant chemotherapy: yes
relapse free survival time: 40.60 month
recurrence: yes
death: no
|
|
| Sample_geo_accession | GSM784873
| | Sample_status | Public on Sep 01 2011
| | Sample_submission_date | Aug 23 2011
| | Sample_last_update_date | Nov 29 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_biomaterial_provider_ch1 | Roskilde Hospital and Department of Cellular and Molecular Medicine, University of Copenhagen
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was extracted using mirVana® miRNA isolation Kit (Ambion, Applied Biosystems, USA) according to the manufacturers protocol.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocols.
| | Sample_hyb_protocol | Standard Affymetrix protocols.
| | Sample_scan_protocol | Standard Affymetrix protocols.
| | Sample_data_processing | The processing and analysis of expression data were performed using the statistical software R and Bioconductor. For all Affymetrix CEL files the background were corrected and the expression were normalized using robust multiarray average (RMA).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Morten,,Thorsteinsson
| | Sample_contact_email | moth@regionsjaelland.dk
| | Sample_contact_phone | +45 61276425
| | Sample_contact_fax | +45 47323009
| | Sample_contact_department | Department of Surgery
| | Sample_contact_institute | Roskilde Hospital, University of Copenhagen
| | Sample_contact_address | Koegevej 7-13
| | Sample_contact_city | Roskilde
| | Sample_contact_zip/postal_code | 4000
| | Sample_contact_country | Denmark
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM784nnn/GSM784873/suppl/GSM784873.CEL.gz
| | Sample_series_id | GSE31595
| | Sample_data_row_count | 54675
| | |
|
GSM784875 | GPL570 |
|
Colon_R47_1963
|
Colon adenocarcinoma
|
age: 62
gender: female
ethnicity: caucasian
tumor location: right colon
tnm-stage: III
histology: adenocarcinoma
grade: moderately diff.
number of lymphnodes resected: 31
adjuvant chemotherapy: yes
relapse free survival time: 36.36 month
recurrence: no
death: no
|
|
| Sample_geo_accession | GSM784875
| | Sample_status | Public on Sep 01 2011
| | Sample_submission_date | Aug 23 2011
| | Sample_last_update_date | Nov 29 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_biomaterial_provider_ch1 | Roskilde Hospital and Department of Cellular and Molecular Medicine, University of Copenhagen
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was extracted using mirVana® miRNA isolation Kit (Ambion, Applied Biosystems, USA) according to the manufacturers protocol.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocols.
| | Sample_hyb_protocol | Standard Affymetrix protocols.
| | Sample_scan_protocol | Standard Affymetrix protocols.
| | Sample_data_processing | The processing and analysis of expression data were performed using the statistical software R and Bioconductor. For all Affymetrix CEL files the background were corrected and the expression were normalized using robust multiarray average (RMA).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Morten,,Thorsteinsson
| | Sample_contact_email | moth@regionsjaelland.dk
| | Sample_contact_phone | +45 61276425
| | Sample_contact_fax | +45 47323009
| | Sample_contact_department | Department of Surgery
| | Sample_contact_institute | Roskilde Hospital, University of Copenhagen
| | Sample_contact_address | Koegevej 7-13
| | Sample_contact_city | Roskilde
| | Sample_contact_zip/postal_code | 4000
| | Sample_contact_country | Denmark
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM784nnn/GSM784875/suppl/GSM784875.CEL.gz
| | Sample_series_id | GSE31595
| | Sample_data_row_count | 54675
| | |
|
GSM784878 | GPL570 |
|
Colon_R49_1965
|
Colon adenocarcinoma
|
age: 64
gender: male
ethnicity: caucasian
tumor location: right colon
tnm-stage: III
histology: adenocarcinoma
grade: poor diff.
number of lymphnodes resected: 21
adjuvant chemotherapy: yes
relapse free survival time: 36.10 month
recurrence: no
death: no
|
|
| Sample_geo_accession | GSM784878
| | Sample_status | Public on Sep 01 2011
| | Sample_submission_date | Aug 23 2011
| | Sample_last_update_date | Nov 29 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_biomaterial_provider_ch1 | Roskilde Hospital and Department of Cellular and Molecular Medicine, University of Copenhagen
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was extracted using mirVana® miRNA isolation Kit (Ambion, Applied Biosystems, USA) according to the manufacturers protocol.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocols.
| | Sample_hyb_protocol | Standard Affymetrix protocols.
| | Sample_scan_protocol | Standard Affymetrix protocols.
| | Sample_data_processing | The processing and analysis of expression data were performed using the statistical software R and Bioconductor. For all Affymetrix CEL files the background were corrected and the expression were normalized using robust multiarray average (RMA).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Morten,,Thorsteinsson
| | Sample_contact_email | moth@regionsjaelland.dk
| | Sample_contact_phone | +45 61276425
| | Sample_contact_fax | +45 47323009
| | Sample_contact_department | Department of Surgery
| | Sample_contact_institute | Roskilde Hospital, University of Copenhagen
| | Sample_contact_address | Koegevej 7-13
| | Sample_contact_city | Roskilde
| | Sample_contact_zip/postal_code | 4000
| | Sample_contact_country | Denmark
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM784nnn/GSM784878/suppl/GSM784878.CEL.gz
| | Sample_series_id | GSE31595
| | Sample_data_row_count | 54675
| | |
|
GSM784881 | GPL570 |
|
Colon_R52_1967
|
Colon adenocarcinoma
|
age: 72
gender: male
ethnicity: caucasian
tumor location: left colon
tnm-stage: III
histology: adenocarcinoma
grade: well diff.
number of lymphnodes resected: 13
adjuvant chemotherapy: yes
relapse free survival time: 20.38 month
recurrence: yes
death: yes
|
|
| Sample_geo_accession | GSM784881
| | Sample_status | Public on Sep 01 2011
| | Sample_submission_date | Aug 23 2011
| | Sample_last_update_date | Nov 29 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_biomaterial_provider_ch1 | Roskilde Hospital and Department of Cellular and Molecular Medicine, University of Copenhagen
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was extracted using mirVana® miRNA isolation Kit (Ambion, Applied Biosystems, USA) according to the manufacturers protocol.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocols.
| | Sample_hyb_protocol | Standard Affymetrix protocols.
| | Sample_scan_protocol | Standard Affymetrix protocols.
| | Sample_data_processing | The processing and analysis of expression data were performed using the statistical software R and Bioconductor. For all Affymetrix CEL files the background were corrected and the expression were normalized using robust multiarray average (RMA).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Morten,,Thorsteinsson
| | Sample_contact_email | moth@regionsjaelland.dk
| | Sample_contact_phone | +45 61276425
| | Sample_contact_fax | +45 47323009
| | Sample_contact_department | Department of Surgery
| | Sample_contact_institute | Roskilde Hospital, University of Copenhagen
| | Sample_contact_address | Koegevej 7-13
| | Sample_contact_city | Roskilde
| | Sample_contact_zip/postal_code | 4000
| | Sample_contact_country | Denmark
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM784nnn/GSM784881/suppl/GSM784881.CEL.gz
| | Sample_series_id | GSE31595
| | Sample_data_row_count | 54675
| | |
|
GSM784884 | GPL570 |
|
Colon_R54_1969
|
Colon adenocarcinoma
|
age: 63
gender: female
ethnicity: caucasian
tumor location: left colon
tnm-stage: II
histology: adenocarcinoma
grade: well diff.
number of lymphnodes resected: 12
adjuvant chemotherapy: no
relapse free survival time: 36.59 month
recurrence: no
death: no
|
|
| Sample_geo_accession | GSM784884
| | Sample_status | Public on Sep 01 2011
| | Sample_submission_date | Aug 23 2011
| | Sample_last_update_date | Nov 29 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_biomaterial_provider_ch1 | Roskilde Hospital and Department of Cellular and Molecular Medicine, University of Copenhagen
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was extracted using mirVana® miRNA isolation Kit (Ambion, Applied Biosystems, USA) according to the manufacturers protocol.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocols.
| | Sample_hyb_protocol | Standard Affymetrix protocols.
| | Sample_scan_protocol | Standard Affymetrix protocols.
| | Sample_data_processing | The processing and analysis of expression data were performed using the statistical software R and Bioconductor. For all Affymetrix CEL files the background were corrected and the expression were normalized using robust multiarray average (RMA).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Morten,,Thorsteinsson
| | Sample_contact_email | moth@regionsjaelland.dk
| | Sample_contact_phone | +45 61276425
| | Sample_contact_fax | +45 47323009
| | Sample_contact_department | Department of Surgery
| | Sample_contact_institute | Roskilde Hospital, University of Copenhagen
| | Sample_contact_address | Koegevej 7-13
| | Sample_contact_city | Roskilde
| | Sample_contact_zip/postal_code | 4000
| | Sample_contact_country | Denmark
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM784nnn/GSM784884/suppl/GSM784884.CEL.gz
| | Sample_series_id | GSE31595
| | Sample_data_row_count | 54675
| | |
|
GSM784885 | GPL570 |
|
Colon_R55_1970
|
Colon adenocarcinoma
|
age: 88
gender: male
ethnicity: caucasian
tumor location: right colon
tnm-stage: III
histology: adenocarcinoma
grade: moderately diff.
number of lymphnodes resected: 12
adjuvant chemotherapy: no
relapse free survival time: 11.67 month
recurrence: yes
death: yes
|
|
| Sample_geo_accession | GSM784885
| | Sample_status | Public on Sep 01 2011
| | Sample_submission_date | Aug 23 2011
| | Sample_last_update_date | Nov 29 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_biomaterial_provider_ch1 | Roskilde Hospital and Department of Cellular and Molecular Medicine, University of Copenhagen
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was extracted using mirVana® miRNA isolation Kit (Ambion, Applied Biosystems, USA) according to the manufacturers protocol.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocols.
| | Sample_hyb_protocol | Standard Affymetrix protocols.
| | Sample_scan_protocol | Standard Affymetrix protocols.
| | Sample_data_processing | The processing and analysis of expression data were performed using the statistical software R and Bioconductor. For all Affymetrix CEL files the background were corrected and the expression were normalized using robust multiarray average (RMA).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Morten,,Thorsteinsson
| | Sample_contact_email | moth@regionsjaelland.dk
| | Sample_contact_phone | +45 61276425
| | Sample_contact_fax | +45 47323009
| | Sample_contact_department | Department of Surgery
| | Sample_contact_institute | Roskilde Hospital, University of Copenhagen
| | Sample_contact_address | Koegevej 7-13
| | Sample_contact_city | Roskilde
| | Sample_contact_zip/postal_code | 4000
| | Sample_contact_country | Denmark
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM784nnn/GSM784885/suppl/GSM784885.CEL.gz
| | Sample_series_id | GSE31595
| | Sample_data_row_count | 54675
| | |
|
GSM784886 | GPL570 |
|
Colon_RB01_14
|
Colon adenocarcinoma
|
age: 77
gender: female
ethnicity: caucasian
tumor location: right colon
tnm-stage: III
histology: mucinous adenocarcinoma
number of lymphnodes resected: 5
adjuvant chemotherapy: no
relapse free survival time: 112.11 month
recurrence: no
death: no
|
|
| Sample_geo_accession | GSM784886
| | Sample_status | Public on Sep 01 2011
| | Sample_submission_date | Aug 23 2011
| | Sample_last_update_date | Nov 29 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_biomaterial_provider_ch1 | Roskilde Hospital and Department of Cellular and Molecular Medicine, University of Copenhagen
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was extracted using mirVana® miRNA isolation Kit (Ambion, Applied Biosystems, USA) according to the manufacturers protocol.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocols.
| | Sample_hyb_protocol | Standard Affymetrix protocols.
| | Sample_scan_protocol | Standard Affymetrix protocols.
| | Sample_data_processing | The processing and analysis of expression data were performed using the statistical software R and Bioconductor. For all Affymetrix CEL files the background were corrected and the expression were normalized using robust multiarray average (RMA).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Morten,,Thorsteinsson
| | Sample_contact_email | moth@regionsjaelland.dk
| | Sample_contact_phone | +45 61276425
| | Sample_contact_fax | +45 47323009
| | Sample_contact_department | Department of Surgery
| | Sample_contact_institute | Roskilde Hospital, University of Copenhagen
| | Sample_contact_address | Koegevej 7-13
| | Sample_contact_city | Roskilde
| | Sample_contact_zip/postal_code | 4000
| | Sample_contact_country | Denmark
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM784nnn/GSM784886/suppl/GSM784886.CEL.gz
| | Sample_series_id | GSE31595
| | Sample_data_row_count | 54675
| | |
|
GSM784887 | GPL570 |
|
Colon_RB06_165
|
Colon adenocarcinoma
|
age: 73
gender: male
ethnicity: caucasian
tumor location: right colon
tnm-stage: II
histology: adenocarcinoma
grade: moderately diff.
adjuvant chemotherapy: no
relapse free survival time: 26.56 month
recurrence: no
death: yes
|
|
| Sample_geo_accession | GSM784887
| | Sample_status | Public on Sep 01 2011
| | Sample_submission_date | Aug 23 2011
| | Sample_last_update_date | Nov 29 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_biomaterial_provider_ch1 | Roskilde Hospital and Department of Cellular and Molecular Medicine, University of Copenhagen
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was extracted using mirVana® miRNA isolation Kit (Ambion, Applied Biosystems, USA) according to the manufacturers protocol.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocols.
| | Sample_hyb_protocol | Standard Affymetrix protocols.
| | Sample_scan_protocol | Standard Affymetrix protocols.
| | Sample_data_processing | The processing and analysis of expression data were performed using the statistical software R and Bioconductor. For all Affymetrix CEL files the background were corrected and the expression were normalized using robust multiarray average (RMA).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Morten,,Thorsteinsson
| | Sample_contact_email | moth@regionsjaelland.dk
| | Sample_contact_phone | +45 61276425
| | Sample_contact_fax | +45 47323009
| | Sample_contact_department | Department of Surgery
| | Sample_contact_institute | Roskilde Hospital, University of Copenhagen
| | Sample_contact_address | Koegevej 7-13
| | Sample_contact_city | Roskilde
| | Sample_contact_zip/postal_code | 4000
| | Sample_contact_country | Denmark
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM784nnn/GSM784887/suppl/GSM784887.CEL.gz
| | Sample_series_id | GSE31595
| | Sample_data_row_count | 54675
| | |
|
GSM784888 | GPL570 |
|
Colon_RB14_155
|
Colon adenocarcinoma
|
age: 80
gender: male
ethnicity: caucasian
tumor location: left colon
tnm-stage: II
histology: adenocarcinoma
grade: poor diff.
number of lymphnodes resected: 4
adjuvant chemotherapy: no
relapse free survival time: 6.41 month
recurrence: yes
death: yes
|
|
| Sample_geo_accession | GSM784888
| | Sample_status | Public on Sep 01 2011
| | Sample_submission_date | Aug 23 2011
| | Sample_last_update_date | Nov 29 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_biomaterial_provider_ch1 | Roskilde Hospital and Department of Cellular and Molecular Medicine, University of Copenhagen
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was extracted using mirVana® miRNA isolation Kit (Ambion, Applied Biosystems, USA) according to the manufacturers protocol.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocols.
| | Sample_hyb_protocol | Standard Affymetrix protocols.
| | Sample_scan_protocol | Standard Affymetrix protocols.
| | Sample_data_processing | The processing and analysis of expression data were performed using the statistical software R and Bioconductor. For all Affymetrix CEL files the background were corrected and the expression were normalized using robust multiarray average (RMA).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Morten,,Thorsteinsson
| | Sample_contact_email | moth@regionsjaelland.dk
| | Sample_contact_phone | +45 61276425
| | Sample_contact_fax | +45 47323009
| | Sample_contact_department | Department of Surgery
| | Sample_contact_institute | Roskilde Hospital, University of Copenhagen
| | Sample_contact_address | Koegevej 7-13
| | Sample_contact_city | Roskilde
| | Sample_contact_zip/postal_code | 4000
| | Sample_contact_country | Denmark
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM784nnn/GSM784888/suppl/GSM784888.CEL.gz
| | Sample_series_id | GSE31595
| | Sample_data_row_count | 54675
| | |
|
GSM784889 | GPL570 |
|
Colon_RB22_1655
|
Colon adenocarcinoma
|
age: 80
gender: female
ethnicity: caucasian
tumor location: left colon
tnm-stage: III
histology: adenocarcinoma
grade: moderately diff.
number of lymphnodes resected: 7
adjuvant chemotherapy: no
relapse free survival time: 109.84 month
recurrence: no
death: no
|
|
| Sample_geo_accession | GSM784889
| | Sample_status | Public on Sep 01 2011
| | Sample_submission_date | Aug 23 2011
| | Sample_last_update_date | Nov 29 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_biomaterial_provider_ch1 | Roskilde Hospital and Department of Cellular and Molecular Medicine, University of Copenhagen
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was extracted using mirVana® miRNA isolation Kit (Ambion, Applied Biosystems, USA) according to the manufacturers protocol.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocols.
| | Sample_hyb_protocol | Standard Affymetrix protocols.
| | Sample_scan_protocol | Standard Affymetrix protocols.
| | Sample_data_processing | The processing and analysis of expression data were performed using the statistical software R and Bioconductor. For all Affymetrix CEL files the background were corrected and the expression were normalized using robust multiarray average (RMA).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Morten,,Thorsteinsson
| | Sample_contact_email | moth@regionsjaelland.dk
| | Sample_contact_phone | +45 61276425
| | Sample_contact_fax | +45 47323009
| | Sample_contact_department | Department of Surgery
| | Sample_contact_institute | Roskilde Hospital, University of Copenhagen
| | Sample_contact_address | Koegevej 7-13
| | Sample_contact_city | Roskilde
| | Sample_contact_zip/postal_code | 4000
| | Sample_contact_country | Denmark
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM784nnn/GSM784889/suppl/GSM784889.CEL.gz
| | Sample_series_id | GSE31595
| | Sample_data_row_count | 54675
| | |
|
GSM784890 | GPL570 |
|
Colon_RB24_1656
|
Colon adenocarcinoma
|
age: 78
gender: male
ethnicity: caucasian
tumor location: left colon
tnm-stage: II
histology: adenocarcinoma
grade: moderately diff.
number of lymphnodes resected: 16
adjuvant chemotherapy: no
relapse free survival time: 100.86 month
recurrence: no
death: no
|
|
| Sample_geo_accession | GSM784890
| | Sample_status | Public on Sep 01 2011
| | Sample_submission_date | Aug 23 2011
| | Sample_last_update_date | Nov 29 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_biomaterial_provider_ch1 | Roskilde Hospital and Department of Cellular and Molecular Medicine, University of Copenhagen
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was extracted using mirVana® miRNA isolation Kit (Ambion, Applied Biosystems, USA) according to the manufacturers protocol.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocols.
| | Sample_hyb_protocol | Standard Affymetrix protocols.
| | Sample_scan_protocol | Standard Affymetrix protocols.
| | Sample_data_processing | The processing and analysis of expression data were performed using the statistical software R and Bioconductor. For all Affymetrix CEL files the background were corrected and the expression were normalized using robust multiarray average (RMA).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Morten,,Thorsteinsson
| | Sample_contact_email | moth@regionsjaelland.dk
| | Sample_contact_phone | +45 61276425
| | Sample_contact_fax | +45 47323009
| | Sample_contact_department | Department of Surgery
| | Sample_contact_institute | Roskilde Hospital, University of Copenhagen
| | Sample_contact_address | Koegevej 7-13
| | Sample_contact_city | Roskilde
| | Sample_contact_zip/postal_code | 4000
| | Sample_contact_country | Denmark
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM784nnn/GSM784890/suppl/GSM784890.CEL.gz
| | Sample_series_id | GSE31595
| | Sample_data_row_count | 54675
| | |
|
GSM784891 | GPL570 |
|
Colon_RB29_1650
|
Colon adenocarcinoma
|
age: 70
gender: female
ethnicity: caucasian
tumor location: left colon
tnm-stage: III
histology: adenocarcinoma
grade: moderately diff.
number of lymphnodes resected: 10
adjuvant chemotherapy: yes
relapse free survival time: 42.05 month
recurrence: yes
death: yes
|
|
| Sample_geo_accession | GSM784891
| | Sample_status | Public on Sep 01 2011
| | Sample_submission_date | Aug 23 2011
| | Sample_last_update_date | Nov 29 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_biomaterial_provider_ch1 | Roskilde Hospital and Department of Cellular and Molecular Medicine, University of Copenhagen
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was extracted using mirVana® miRNA isolation Kit (Ambion, Applied Biosystems, USA) according to the manufacturers protocol.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocols.
| | Sample_hyb_protocol | Standard Affymetrix protocols.
| | Sample_scan_protocol | Standard Affymetrix protocols.
| | Sample_data_processing | The processing and analysis of expression data were performed using the statistical software R and Bioconductor. For all Affymetrix CEL files the background were corrected and the expression were normalized using robust multiarray average (RMA).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Morten,,Thorsteinsson
| | Sample_contact_email | moth@regionsjaelland.dk
| | Sample_contact_phone | +45 61276425
| | Sample_contact_fax | +45 47323009
| | Sample_contact_department | Department of Surgery
| | Sample_contact_institute | Roskilde Hospital, University of Copenhagen
| | Sample_contact_address | Koegevej 7-13
| | Sample_contact_city | Roskilde
| | Sample_contact_zip/postal_code | 4000
| | Sample_contact_country | Denmark
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM784nnn/GSM784891/suppl/GSM784891.CEL.gz
| | Sample_series_id | GSE31595
| | Sample_data_row_count | 54675
| | |
|
GSM784892 | GPL570 |
|
Colon_RB30_1651
|
Colon adenocarcinoma
|
age: 91
gender: male
ethnicity: caucasian
tumor location: right colon
tnm-stage: II
histology: adenocarcinoma
grade: poor diff.
number of lymphnodes resected: 24
adjuvant chemotherapy: no
relapse free survival time: 38.14 month
recurrence: no
death: yes
|
|
| Sample_geo_accession | GSM784892
| | Sample_status | Public on Sep 01 2011
| | Sample_submission_date | Aug 23 2011
| | Sample_last_update_date | Nov 29 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_biomaterial_provider_ch1 | Roskilde Hospital and Department of Cellular and Molecular Medicine, University of Copenhagen
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was extracted using mirVana® miRNA isolation Kit (Ambion, Applied Biosystems, USA) according to the manufacturers protocol.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocols.
| | Sample_hyb_protocol | Standard Affymetrix protocols.
| | Sample_scan_protocol | Standard Affymetrix protocols.
| | Sample_data_processing | The processing and analysis of expression data were performed using the statistical software R and Bioconductor. For all Affymetrix CEL files the background were corrected and the expression were normalized using robust multiarray average (RMA).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Morten,,Thorsteinsson
| | Sample_contact_email | moth@regionsjaelland.dk
| | Sample_contact_phone | +45 61276425
| | Sample_contact_fax | +45 47323009
| | Sample_contact_department | Department of Surgery
| | Sample_contact_institute | Roskilde Hospital, University of Copenhagen
| | Sample_contact_address | Koegevej 7-13
| | Sample_contact_city | Roskilde
| | Sample_contact_zip/postal_code | 4000
| | Sample_contact_country | Denmark
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM784nnn/GSM784892/suppl/GSM784892.CEL.gz
| | Sample_series_id | GSE31595
| | Sample_data_row_count | 54675
| | |
|
GSM784893 | GPL570 |
|
Colon_RB33_1658
|
Colon adenocarcinoma
|
age: 82
gender: female
ethnicity: caucasian
tumor location: right colon
tnm-stage: II
histology: adenocarcinoma
grade: moderately diff.
number of lymphnodes resected: 15
adjuvant chemotherapy: no
relapse free survival time: 99.19 month
recurrence: no
death: no
|
|
| Sample_geo_accession | GSM784893
| | Sample_status | Public on Sep 01 2011
| | Sample_submission_date | Aug 23 2011
| | Sample_last_update_date | Nov 29 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_biomaterial_provider_ch1 | Roskilde Hospital and Department of Cellular and Molecular Medicine, University of Copenhagen
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was extracted using mirVana® miRNA isolation Kit (Ambion, Applied Biosystems, USA) according to the manufacturers protocol.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocols.
| | Sample_hyb_protocol | Standard Affymetrix protocols.
| | Sample_scan_protocol | Standard Affymetrix protocols.
| | Sample_data_processing | The processing and analysis of expression data were performed using the statistical software R and Bioconductor. For all Affymetrix CEL files the background were corrected and the expression were normalized using robust multiarray average (RMA).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Morten,,Thorsteinsson
| | Sample_contact_email | moth@regionsjaelland.dk
| | Sample_contact_phone | +45 61276425
| | Sample_contact_fax | +45 47323009
| | Sample_contact_department | Department of Surgery
| | Sample_contact_institute | Roskilde Hospital, University of Copenhagen
| | Sample_contact_address | Koegevej 7-13
| | Sample_contact_city | Roskilde
| | Sample_contact_zip/postal_code | 4000
| | Sample_contact_country | Denmark
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM784nnn/GSM784893/suppl/GSM784893.CEL.gz
| | Sample_series_id | GSE31595
| | Sample_data_row_count | 54675
| | |
|
GSM784894 | GPL570 |
|
Colon_RB35_1659
|
Colon adenocarcinoma
|
age: 90
gender: female
ethnicity: caucasian
tumor location: right colon
tnm-stage: II
histology: adenocarcinoma
grade: moderately diff.
adjuvant chemotherapy: no
relapse free survival time: 33.01 month
recurrence: no
death: yes
|
|
| Sample_geo_accession | GSM784894
| | Sample_status | Public on Sep 01 2011
| | Sample_submission_date | Aug 23 2011
| | Sample_last_update_date | Nov 29 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_biomaterial_provider_ch1 | Roskilde Hospital and Department of Cellular and Molecular Medicine, University of Copenhagen
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was extracted using mirVana® miRNA isolation Kit (Ambion, Applied Biosystems, USA) according to the manufacturers protocol.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocols.
| | Sample_hyb_protocol | Standard Affymetrix protocols.
| | Sample_scan_protocol | Standard Affymetrix protocols.
| | Sample_data_processing | The processing and analysis of expression data were performed using the statistical software R and Bioconductor. For all Affymetrix CEL files the background were corrected and the expression were normalized using robust multiarray average (RMA).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Morten,,Thorsteinsson
| | Sample_contact_email | moth@regionsjaelland.dk
| | Sample_contact_phone | +45 61276425
| | Sample_contact_fax | +45 47323009
| | Sample_contact_department | Department of Surgery
| | Sample_contact_institute | Roskilde Hospital, University of Copenhagen
| | Sample_contact_address | Koegevej 7-13
| | Sample_contact_city | Roskilde
| | Sample_contact_zip/postal_code | 4000
| | Sample_contact_country | Denmark
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM784nnn/GSM784894/suppl/GSM784894.CEL.gz
| | Sample_series_id | GSE31595
| | Sample_data_row_count | 54675
| | |
|
GSM784901 | GPL570 |
|
Colon_RB36_1646
|
Colon adenocarcinoma
|
age: 83
gender: female
ethnicity: caucasian
tumor location: right colon
tnm-stage: III
histology: adenocarcinoma
grade: moderately diff.
number of lymphnodes resected: 8
adjuvant chemotherapy: yes
relapse free survival time: 101.82 month
recurrence: no
death: no
|
|
| Sample_geo_accession | GSM784901
| | Sample_status | Public on Sep 01 2011
| | Sample_submission_date | Aug 23 2011
| | Sample_last_update_date | Nov 29 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_biomaterial_provider_ch1 | Roskilde Hospital and Department of Cellular and Molecular Medicine, University of Copenhagen
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was extracted using mirVana® miRNA isolation Kit (Ambion, Applied Biosystems, USA) according to the manufacturers protocol.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocols.
| | Sample_hyb_protocol | Standard Affymetrix protocols.
| | Sample_scan_protocol | Standard Affymetrix protocols.
| | Sample_data_processing | The processing and analysis of expression data were performed using the statistical software R and Bioconductor. For all Affymetrix CEL files the background were corrected and the expression were normalized using robust multiarray average (RMA).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Morten,,Thorsteinsson
| | Sample_contact_email | moth@regionsjaelland.dk
| | Sample_contact_phone | +45 61276425
| | Sample_contact_fax | +45 47323009
| | Sample_contact_department | Department of Surgery
| | Sample_contact_institute | Roskilde Hospital, University of Copenhagen
| | Sample_contact_address | Koegevej 7-13
| | Sample_contact_city | Roskilde
| | Sample_contact_zip/postal_code | 4000
| | Sample_contact_country | Denmark
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM784nnn/GSM784901/suppl/GSM784901.CEL.gz
| | Sample_series_id | GSE31595
| | Sample_data_row_count | 54675
| | |
|
GSM784902 | GPL570 |
|
Colon_RB43_1648
|
Colon adenocarcinoma
|
age: 81
gender: female
ethnicity: caucasian
tumor location: right colon
tnm-stage: II
histology: adenocarcinoma
grade: moderately diff.
number of lymphnodes resected: 12
adjuvant chemotherapy: no
relapse free survival time: 4.60 month
recurrence: yes
death: yes
|
|
| Sample_geo_accession | GSM784902
| | Sample_status | Public on Sep 01 2011
| | Sample_submission_date | Aug 23 2011
| | Sample_last_update_date | Nov 29 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_biomaterial_provider_ch1 | Roskilde Hospital and Department of Cellular and Molecular Medicine, University of Copenhagen
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was extracted using mirVana® miRNA isolation Kit (Ambion, Applied Biosystems, USA) according to the manufacturers protocol.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocols.
| | Sample_hyb_protocol | Standard Affymetrix protocols.
| | Sample_scan_protocol | Standard Affymetrix protocols.
| | Sample_data_processing | The processing and analysis of expression data were performed using the statistical software R and Bioconductor. For all Affymetrix CEL files the background were corrected and the expression were normalized using robust multiarray average (RMA).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Morten,,Thorsteinsson
| | Sample_contact_email | moth@regionsjaelland.dk
| | Sample_contact_phone | +45 61276425
| | Sample_contact_fax | +45 47323009
| | Sample_contact_department | Department of Surgery
| | Sample_contact_institute | Roskilde Hospital, University of Copenhagen
| | Sample_contact_address | Koegevej 7-13
| | Sample_contact_city | Roskilde
| | Sample_contact_zip/postal_code | 4000
| | Sample_contact_country | Denmark
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM784nnn/GSM784902/suppl/GSM784902.CEL.gz
| | Sample_series_id | GSE31595
| | Sample_data_row_count | 54675
| | |
|
GSM784903 | GPL570 |
|
Colon_RB45_1652
|
Colon adenocarcinoma
|
age: 89
gender: female
ethnicity: caucasian
tumor location: right colon
tnm-stage: II
histology: adenocarcinoma
grade: moderately diff.
number of lymphnodes resected: 11
adjuvant chemotherapy: no
relapse free survival time: 83.11 month
recurrence: no
death: yes
|
|
| Sample_geo_accession | GSM784903
| | Sample_status | Public on Sep 01 2011
| | Sample_submission_date | Aug 23 2011
| | Sample_last_update_date | Nov 29 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_biomaterial_provider_ch1 | Roskilde Hospital and Department of Cellular and Molecular Medicine, University of Copenhagen
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was extracted using mirVana® miRNA isolation Kit (Ambion, Applied Biosystems, USA) according to the manufacturers protocol.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocols.
| | Sample_hyb_protocol | Standard Affymetrix protocols.
| | Sample_scan_protocol | Standard Affymetrix protocols.
| | Sample_data_processing | The processing and analysis of expression data were performed using the statistical software R and Bioconductor. For all Affymetrix CEL files the background were corrected and the expression were normalized using robust multiarray average (RMA).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Morten,,Thorsteinsson
| | Sample_contact_email | moth@regionsjaelland.dk
| | Sample_contact_phone | +45 61276425
| | Sample_contact_fax | +45 47323009
| | Sample_contact_department | Department of Surgery
| | Sample_contact_institute | Roskilde Hospital, University of Copenhagen
| | Sample_contact_address | Koegevej 7-13
| | Sample_contact_city | Roskilde
| | Sample_contact_zip/postal_code | 4000
| | Sample_contact_country | Denmark
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM784nnn/GSM784903/suppl/GSM784903.CEL.gz
| | Sample_series_id | GSE31595
| | Sample_data_row_count | 54675
| | |
|
GSM784904 | GPL570 |
|
Colon_RB50_182
|
Colon adenocarcinoma
|
age: 69
gender: male
ethnicity: caucasian
tumor location: left colon
tnm-stage: III
histology: adenocarcinoma
grade: moderately diff.
number of lymphnodes resected: 17
adjuvant chemotherapy: yes
relapse free survival time: 96.82 month
recurrence: no
death: no
|
|
| Sample_geo_accession | GSM784904
| | Sample_status | Public on Sep 01 2011
| | Sample_submission_date | Aug 23 2011
| | Sample_last_update_date | Nov 29 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_biomaterial_provider_ch1 | Roskilde Hospital and Department of Cellular and Molecular Medicine, University of Copenhagen
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was extracted using mirVana® miRNA isolation Kit (Ambion, Applied Biosystems, USA) according to the manufacturers protocol.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocols.
| | Sample_hyb_protocol | Standard Affymetrix protocols.
| | Sample_scan_protocol | Standard Affymetrix protocols.
| | Sample_data_processing | The processing and analysis of expression data were performed using the statistical software R and Bioconductor. For all Affymetrix CEL files the background were corrected and the expression were normalized using robust multiarray average (RMA).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Morten,,Thorsteinsson
| | Sample_contact_email | moth@regionsjaelland.dk
| | Sample_contact_phone | +45 61276425
| | Sample_contact_fax | +45 47323009
| | Sample_contact_department | Department of Surgery
| | Sample_contact_institute | Roskilde Hospital, University of Copenhagen
| | Sample_contact_address | Koegevej 7-13
| | Sample_contact_city | Roskilde
| | Sample_contact_zip/postal_code | 4000
| | Sample_contact_country | Denmark
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM784nnn/GSM784904/suppl/GSM784904.CEL.gz
| | Sample_series_id | GSE31595
| | Sample_data_row_count | 54675
| | |
|
GSM784905 | GPL570 |
|
Colon_RB51_183
|
Colon adenocarcinoma
|
age: 85
gender: male
ethnicity: caucasian
tumor location: right colon
tnm-stage: II
histology: adenocarcinoma
grade: moderately diff.
number of lymphnodes resected: 15
adjuvant chemotherapy: no
relapse free survival time: 96.82 month
recurrence: no
death: no
|
|
| Sample_geo_accession | GSM784905
| | Sample_status | Public on Sep 01 2011
| | Sample_submission_date | Aug 23 2011
| | Sample_last_update_date | Nov 29 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_biomaterial_provider_ch1 | Roskilde Hospital and Department of Cellular and Molecular Medicine, University of Copenhagen
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was extracted using mirVana® miRNA isolation Kit (Ambion, Applied Biosystems, USA) according to the manufacturers protocol.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocols.
| | Sample_hyb_protocol | Standard Affymetrix protocols.
| | Sample_scan_protocol | Standard Affymetrix protocols.
| | Sample_data_processing | The processing and analysis of expression data were performed using the statistical software R and Bioconductor. For all Affymetrix CEL files the background were corrected and the expression were normalized using robust multiarray average (RMA).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Morten,,Thorsteinsson
| | Sample_contact_email | moth@regionsjaelland.dk
| | Sample_contact_phone | +45 61276425
| | Sample_contact_fax | +45 47323009
| | Sample_contact_department | Department of Surgery
| | Sample_contact_institute | Roskilde Hospital, University of Copenhagen
| | Sample_contact_address | Koegevej 7-13
| | Sample_contact_city | Roskilde
| | Sample_contact_zip/postal_code | 4000
| | Sample_contact_country | Denmark
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM784nnn/GSM784905/suppl/GSM784905.CEL.gz
| | Sample_series_id | GSE31595
| | Sample_data_row_count | 54675
| | |
|
GSM784906 | GPL570 |
|
Colon_RB56_1653
|
Colon adenocarcinoma
|
age: 89
gender: female
ethnicity: caucasian
tumor location: right colon
tnm-stage: III
histology: adenocarcinoma
grade: well diff.
number of lymphnodes resected: 10
adjuvant chemotherapy: yes
relapse free survival time: 43.27 month
recurrence: no
death: no
|
|
| Sample_geo_accession | GSM784906
| | Sample_status | Public on Sep 01 2011
| | Sample_submission_date | Aug 23 2011
| | Sample_last_update_date | Nov 29 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_biomaterial_provider_ch1 | Roskilde Hospital and Department of Cellular and Molecular Medicine, University of Copenhagen
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was extracted using mirVana® miRNA isolation Kit (Ambion, Applied Biosystems, USA) according to the manufacturers protocol.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocols.
| | Sample_hyb_protocol | Standard Affymetrix protocols.
| | Sample_scan_protocol | Standard Affymetrix protocols.
| | Sample_data_processing | The processing and analysis of expression data were performed using the statistical software R and Bioconductor. For all Affymetrix CEL files the background were corrected and the expression were normalized using robust multiarray average (RMA).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Morten,,Thorsteinsson
| | Sample_contact_email | moth@regionsjaelland.dk
| | Sample_contact_phone | +45 61276425
| | Sample_contact_fax | +45 47323009
| | Sample_contact_department | Department of Surgery
| | Sample_contact_institute | Roskilde Hospital, University of Copenhagen
| | Sample_contact_address | Koegevej 7-13
| | Sample_contact_city | Roskilde
| | Sample_contact_zip/postal_code | 4000
| | Sample_contact_country | Denmark
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM784nnn/GSM784906/suppl/GSM784906.CEL.gz
| | Sample_series_id | GSE31595
| | Sample_data_row_count | 54675
| | |
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