Search results for the GEO ID: GSE31681  |
(Click on the check boxes provided under "Select for analysis", to initiate grouping) |
(Once the selection is made, click on "Add groups" in "Make groups for comparison", to make a group. Scroll down) |
|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM785931 | GPL570 |
|
Cumulus cells-GV-BP7
|
Cumulus cells-GV
|
tissue: ovary
cell type: cumulus cells
|
Human cumulus cells was mechanically separated from oocytes and lysed for RNA extraction
|
| Sample_geo_accession | GSM785931
| | Sample_status | Public on Mar 10 2012
| | Sample_submission_date | Aug 25 2011
| | Sample_last_update_date | Mar 10 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated using RNeasy micro kits (Qiagen) according to the manufacturer's instructions and quantified using a NanoDrop spectrophotometer
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Complementary RNA (cRNA) was prepared according to the manufacturer’s (Affymetrix) protocol “3’ IVT express protocol”, starting from 100 ng total RNA
| | Sample_hyb_protocol | Following fragmentation, cRNA was hybridized for 16 hr at 45C on the GeneChip Human U133 plus 2.0 array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000 7G
| | Sample_data_processing | Data were analyzed with the GCOS 1.2 software (Affymetrix), using the default analysis settings and global scaling as normalization method, with a trimmed mean target intensity value (TGT) of each array arbitrarily set to 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Said,,Assou
| | Sample_contact_email | said.assou@inserm.fr
| | Sample_contact_institute | INSERM
| | Sample_contact_address | 80, Av. Augustin Flich
| | Sample_contact_city | Montpellier
| | Sample_contact_zip/postal_code | 34000
| | Sample_contact_country | France
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM785nnn/GSM785931/suppl/GSM785931.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM785nnn/GSM785931/suppl/GSM785931.CHP.gz
| | Sample_series_id | GSE31681
| | Sample_data_row_count | 54675
| | |
|
GSM785932 | GPL570 |
|
Cumulus cells-GV-FE7
|
Cumulus cells-GV
|
tissue: ovary
cell type: cumulus cells
|
Human cumulus cells was mechanically separated from oocytes and lysed for RNA extraction
|
| Sample_geo_accession | GSM785932
| | Sample_status | Public on Mar 10 2012
| | Sample_submission_date | Aug 25 2011
| | Sample_last_update_date | Mar 10 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated using RNeasy micro kits (Qiagen) according to the manufacturer's instructions and quantified using a NanoDrop spectrophotometer
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Complementary RNA (cRNA) was prepared according to the manufacturer’s (Affymetrix) protocol “3’ IVT express protocol”, starting from 100 ng total RNA
| | Sample_hyb_protocol | Following fragmentation, cRNA was hybridized for 16 hr at 45C on the GeneChip Human U133 plus 2.0 array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000 7G
| | Sample_data_processing | Data were analyzed with the GCOS 1.2 software (Affymetrix), using the default analysis settings and global scaling as normalization method, with a trimmed mean target intensity value (TGT) of each array arbitrarily set to 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Said,,Assou
| | Sample_contact_email | said.assou@inserm.fr
| | Sample_contact_institute | INSERM
| | Sample_contact_address | 80, Av. Augustin Flich
| | Sample_contact_city | Montpellier
| | Sample_contact_zip/postal_code | 34000
| | Sample_contact_country | France
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM785nnn/GSM785932/suppl/GSM785932.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM785nnn/GSM785932/suppl/GSM785932.CHP.gz
| | Sample_series_id | GSE31681
| | Sample_data_row_count | 54675
| | |
|
GSM785937 | GPL570 |
|
Cumulus cells-GV-GL3
|
Cumulus cells-GV
|
tissue: ovary
cell type: cumulus cells
|
Human cumulus cells was mechanically separated from oocytes and lysed for RNA extraction
|
| Sample_geo_accession | GSM785937
| | Sample_status | Public on Mar 10 2012
| | Sample_submission_date | Aug 25 2011
| | Sample_last_update_date | Mar 10 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated using RNeasy micro kits (Qiagen) according to the manufacturer's instructions and quantified using a NanoDrop spectrophotometer
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Complementary RNA (cRNA) was prepared according to the manufacturer’s (Affymetrix) protocol “3’ IVT express protocol”, starting from 100 ng total RNA
| | Sample_hyb_protocol | Following fragmentation, cRNA was hybridized for 16 hr at 45C on the GeneChip Human U133 plus 2.0 array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000 7G
| | Sample_data_processing | Data were analyzed with the GCOS 1.2 software (Affymetrix), using the default analysis settings and global scaling as normalization method, with a trimmed mean target intensity value (TGT) of each array arbitrarily set to 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Said,,Assou
| | Sample_contact_email | said.assou@inserm.fr
| | Sample_contact_institute | INSERM
| | Sample_contact_address | 80, Av. Augustin Flich
| | Sample_contact_city | Montpellier
| | Sample_contact_zip/postal_code | 34000
| | Sample_contact_country | France
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM785nnn/GSM785937/suppl/GSM785937.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM785nnn/GSM785937/suppl/GSM785937.CHP.gz
| | Sample_series_id | GSE31681
| | Sample_data_row_count | 54675
| | |
|
GSM785938 | GPL570 |
|
Cumulus cells-GV-MS2
|
Cumulus cells-GV
|
tissue: ovary
cell type: cumulus cells
|
Human cumulus cells was mechanically separated from oocytes and lysed for RNA extraction
|
| Sample_geo_accession | GSM785938
| | Sample_status | Public on Mar 10 2012
| | Sample_submission_date | Aug 25 2011
| | Sample_last_update_date | Mar 10 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated using RNeasy micro kits (Qiagen) according to the manufacturer's instructions and quantified using a NanoDrop spectrophotometer
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Complementary RNA (cRNA) was prepared according to the manufacturer’s (Affymetrix) protocol “3’ IVT express protocol”, starting from 100 ng total RNA
| | Sample_hyb_protocol | Following fragmentation, cRNA was hybridized for 16 hr at 45C on the GeneChip Human U133 plus 2.0 array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000 7G
| | Sample_data_processing | Data were analyzed with the GCOS 1.2 software (Affymetrix), using the default analysis settings and global scaling as normalization method, with a trimmed mean target intensity value (TGT) of each array arbitrarily set to 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Said,,Assou
| | Sample_contact_email | said.assou@inserm.fr
| | Sample_contact_institute | INSERM
| | Sample_contact_address | 80, Av. Augustin Flich
| | Sample_contact_city | Montpellier
| | Sample_contact_zip/postal_code | 34000
| | Sample_contact_country | France
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM785nnn/GSM785938/suppl/GSM785938.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM785nnn/GSM785938/suppl/GSM785938.CHP.gz
| | Sample_series_id | GSE31681
| | Sample_data_row_count | 54675
| | |
|
GSM785939 | GPL570 |
|
Cumulus cells-GV-MS9
|
Cumulus cells-GV
|
tissue: ovary
cell type: cumulus cells
|
Human cumulus cells was mechanically separated from oocytes and lysed for RNA extraction
|
| Sample_geo_accession | GSM785939
| | Sample_status | Public on Mar 10 2012
| | Sample_submission_date | Aug 25 2011
| | Sample_last_update_date | Mar 10 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated using RNeasy micro kits (Qiagen) according to the manufacturer's instructions and quantified using a NanoDrop spectrophotometer
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Complementary RNA (cRNA) was prepared according to the manufacturer’s (Affymetrix) protocol “3’ IVT express protocol”, starting from 100 ng total RNA
| | Sample_hyb_protocol | Following fragmentation, cRNA was hybridized for 16 hr at 45C on the GeneChip Human U133 plus 2.0 array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000 7G
| | Sample_data_processing | Data were analyzed with the GCOS 1.2 software (Affymetrix), using the default analysis settings and global scaling as normalization method, with a trimmed mean target intensity value (TGT) of each array arbitrarily set to 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Said,,Assou
| | Sample_contact_email | said.assou@inserm.fr
| | Sample_contact_institute | INSERM
| | Sample_contact_address | 80, Av. Augustin Flich
| | Sample_contact_city | Montpellier
| | Sample_contact_zip/postal_code | 34000
| | Sample_contact_country | France
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM785nnn/GSM785939/suppl/GSM785939.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM785nnn/GSM785939/suppl/GSM785939.CHP.gz
| | Sample_series_id | GSE31681
| | Sample_data_row_count | 54675
| | |
|
GSM785940 | GPL570 |
|
Cumulus cells-GV-PB8
|
Cumulus cells-GV
|
tissue: ovary
cell type: cumulus cells
|
Human cumulus cells was mechanically separated from oocytes and lysed for RNA extraction
|
| Sample_geo_accession | GSM785940
| | Sample_status | Public on Mar 10 2012
| | Sample_submission_date | Aug 25 2011
| | Sample_last_update_date | Mar 10 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated using RNeasy micro kits (Qiagen) according to the manufacturer's instructions and quantified using a NanoDrop spectrophotometer
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Complementary RNA (cRNA) was prepared according to the manufacturer’s (Affymetrix) protocol “3’ IVT express protocol”, starting from 100 ng total RNA
| | Sample_hyb_protocol | Following fragmentation, cRNA was hybridized for 16 hr at 45C on the GeneChip Human U133 plus 2.0 array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000 7G
| | Sample_data_processing | Data were analyzed with the GCOS 1.2 software (Affymetrix), using the default analysis settings and global scaling as normalization method, with a trimmed mean target intensity value (TGT) of each array arbitrarily set to 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Said,,Assou
| | Sample_contact_email | said.assou@inserm.fr
| | Sample_contact_institute | INSERM
| | Sample_contact_address | 80, Av. Augustin Flich
| | Sample_contact_city | Montpellier
| | Sample_contact_zip/postal_code | 34000
| | Sample_contact_country | France
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM785nnn/GSM785940/suppl/GSM785940.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM785nnn/GSM785940/suppl/GSM785940.CHP.gz
| | Sample_series_id | GSE31681
| | Sample_data_row_count | 54675
| | |
|
GSM785941 | GPL570 |
|
Cumulus cells-GV-P1_rep2
|
Cumulus cells-GV
|
tissue: ovary
cell type: cumulus cells
|
Human cumulus cells was mechanically separated from oocytes and lysed for RNA extraction
|
| Sample_geo_accession | GSM785941
| | Sample_status | Public on Mar 10 2012
| | Sample_submission_date | Aug 25 2011
| | Sample_last_update_date | Mar 10 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated using RNeasy micro kits (Qiagen) according to the manufacturer's instructions and quantified using a NanoDrop spectrophotometer
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Complementary RNA (cRNA) was prepared according to the manufacturer’s (Affymetrix) protocol “3’ IVT express protocol”, starting from 100 ng total RNA
| | Sample_hyb_protocol | Following fragmentation, cRNA was hybridized for 16 hr at 45C on the GeneChip Human U133 plus 2.0 array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000 7G
| | Sample_data_processing | Data were analyzed with the GCOS 1.2 software (Affymetrix), using the default analysis settings and global scaling as normalization method, with a trimmed mean target intensity value (TGT) of each array arbitrarily set to 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Said,,Assou
| | Sample_contact_email | said.assou@inserm.fr
| | Sample_contact_institute | INSERM
| | Sample_contact_address | 80, Av. Augustin Flich
| | Sample_contact_city | Montpellier
| | Sample_contact_zip/postal_code | 34000
| | Sample_contact_country | France
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM785nnn/GSM785941/suppl/GSM785941.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM785nnn/GSM785941/suppl/GSM785941.CHP.gz
| | Sample_series_id | GSE31681
| | Sample_data_row_count | 54675
| | |
|
GSM785942 | GPL570 |
|
Cumulus cells-GV-TH1
|
Cumulus cells-GV
|
tissue: ovary
cell type: cumulus cells
|
Human cumulus cells was mechanically separated from oocytes and lysed for RNA extraction
|
| Sample_geo_accession | GSM785942
| | Sample_status | Public on Mar 10 2012
| | Sample_submission_date | Aug 25 2011
| | Sample_last_update_date | Mar 10 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated using RNeasy micro kits (Qiagen) according to the manufacturer's instructions and quantified using a NanoDrop spectrophotometer
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Complementary RNA (cRNA) was prepared according to the manufacturer’s (Affymetrix) protocol “3’ IVT express protocol”, starting from 100 ng total RNA
| | Sample_hyb_protocol | Following fragmentation, cRNA was hybridized for 16 hr at 45C on the GeneChip Human U133 plus 2.0 array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000 7G
| | Sample_data_processing | Data were analyzed with the GCOS 1.2 software (Affymetrix), using the default analysis settings and global scaling as normalization method, with a trimmed mean target intensity value (TGT) of each array arbitrarily set to 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Said,,Assou
| | Sample_contact_email | said.assou@inserm.fr
| | Sample_contact_institute | INSERM
| | Sample_contact_address | 80, Av. Augustin Flich
| | Sample_contact_city | Montpellier
| | Sample_contact_zip/postal_code | 34000
| | Sample_contact_country | France
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM785nnn/GSM785942/suppl/GSM785942.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM785nnn/GSM785942/suppl/GSM785942.CHP.gz
| | Sample_series_id | GSE31681
| | Sample_data_row_count | 54675
| | |
|
GSM785943 | GPL570 |
|
Cumulus cells-MI-CD2
|
Cumulus cells-MI
|
tissue: ovary
cell type: cumulus cells
|
Human cumulus cells was mechanically separated from oocytes and lysed for RNA extraction
|
| Sample_geo_accession | GSM785943
| | Sample_status | Public on Mar 10 2012
| | Sample_submission_date | Aug 25 2011
| | Sample_last_update_date | Mar 10 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated using RNeasy micro kits (Qiagen) according to the manufacturer's instructions and quantified using a NanoDrop spectrophotometer
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Complementary RNA (cRNA) was prepared according to the manufacturer’s (Affymetrix) protocol “3’ IVT express protocol”, starting from 100 ng total RNA
| | Sample_hyb_protocol | Following fragmentation, cRNA was hybridized for 16 hr at 45C on the GeneChip Human U133 plus 2.0 array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000 7G
| | Sample_data_processing | Data were analyzed with the GCOS 1.2 software (Affymetrix), using the default analysis settings and global scaling as normalization method, with a trimmed mean target intensity value (TGT) of each array arbitrarily set to 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Said,,Assou
| | Sample_contact_email | said.assou@inserm.fr
| | Sample_contact_institute | INSERM
| | Sample_contact_address | 80, Av. Augustin Flich
| | Sample_contact_city | Montpellier
| | Sample_contact_zip/postal_code | 34000
| | Sample_contact_country | France
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM785nnn/GSM785943/suppl/GSM785943.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM785nnn/GSM785943/suppl/GSM785943.CHP.gz
| | Sample_series_id | GSE31681
| | Sample_data_row_count | 54675
| | |
|
GSM785944 | GPL570 |
|
Cumulus cells-MI-CM11
|
Cumulus cells-MI
|
tissue: ovary
cell type: cumulus cells
|
Human cumulus cells was mechanically separated from oocytes and lysed for RNA extraction
|
| Sample_geo_accession | GSM785944
| | Sample_status | Public on Mar 10 2012
| | Sample_submission_date | Aug 25 2011
| | Sample_last_update_date | Mar 10 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated using RNeasy micro kits (Qiagen) according to the manufacturer's instructions and quantified using a NanoDrop spectrophotometer
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Complementary RNA (cRNA) was prepared according to the manufacturer’s (Affymetrix) protocol “3’ IVT express protocol”, starting from 100 ng total RNA
| | Sample_hyb_protocol | Following fragmentation, cRNA was hybridized for 16 hr at 45C on the GeneChip Human U133 plus 2.0 array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000 7G
| | Sample_data_processing | Data were analyzed with the GCOS 1.2 software (Affymetrix), using the default analysis settings and global scaling as normalization method, with a trimmed mean target intensity value (TGT) of each array arbitrarily set to 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Said,,Assou
| | Sample_contact_email | said.assou@inserm.fr
| | Sample_contact_institute | INSERM
| | Sample_contact_address | 80, Av. Augustin Flich
| | Sample_contact_city | Montpellier
| | Sample_contact_zip/postal_code | 34000
| | Sample_contact_country | France
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM785nnn/GSM785944/suppl/GSM785944.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM785nnn/GSM785944/suppl/GSM785944.CHP.gz
| | Sample_series_id | GSE31681
| | Sample_data_row_count | 54675
| | |
|
GSM785945 | GPL570 |
|
Cumulus cells-MI-FA2
|
Cumulus cells-MI
|
tissue: ovary
cell type: cumulus cells
|
Human cumulus cells was mechanically separated from oocytes and lysed for RNA extraction
|
| Sample_geo_accession | GSM785945
| | Sample_status | Public on Mar 10 2012
| | Sample_submission_date | Aug 25 2011
| | Sample_last_update_date | Mar 10 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated using RNeasy micro kits (Qiagen) according to the manufacturer's instructions and quantified using a NanoDrop spectrophotometer
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Complementary RNA (cRNA) was prepared according to the manufacturer’s (Affymetrix) protocol “3’ IVT express protocol”, starting from 100 ng total RNA
| | Sample_hyb_protocol | Following fragmentation, cRNA was hybridized for 16 hr at 45C on the GeneChip Human U133 plus 2.0 array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000 7G
| | Sample_data_processing | Data were analyzed with the GCOS 1.2 software (Affymetrix), using the default analysis settings and global scaling as normalization method, with a trimmed mean target intensity value (TGT) of each array arbitrarily set to 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Said,,Assou
| | Sample_contact_email | said.assou@inserm.fr
| | Sample_contact_institute | INSERM
| | Sample_contact_address | 80, Av. Augustin Flich
| | Sample_contact_city | Montpellier
| | Sample_contact_zip/postal_code | 34000
| | Sample_contact_country | France
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM785nnn/GSM785945/suppl/GSM785945.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM785nnn/GSM785945/suppl/GSM785945.CHP.gz
| | Sample_series_id | GSE31681
| | Sample_data_row_count | 54675
| | |
|
GSM785946 | GPL570 |
|
Cumulus cells-MI-FA9
|
Cumulus cells-MI
|
tissue: ovary
cell type: cumulus cells
|
Human cumulus cells was mechanically separated from oocytes and lysed for RNA extraction
|
| Sample_geo_accession | GSM785946
| | Sample_status | Public on Mar 10 2012
| | Sample_submission_date | Aug 25 2011
| | Sample_last_update_date | Mar 10 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated using RNeasy micro kits (Qiagen) according to the manufacturer's instructions and quantified using a NanoDrop spectrophotometer
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Complementary RNA (cRNA) was prepared according to the manufacturer’s (Affymetrix) protocol “3’ IVT express protocol”, starting from 100 ng total RNA
| | Sample_hyb_protocol | Following fragmentation, cRNA was hybridized for 16 hr at 45C on the GeneChip Human U133 plus 2.0 array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000 7G
| | Sample_data_processing | Data were analyzed with the GCOS 1.2 software (Affymetrix), using the default analysis settings and global scaling as normalization method, with a trimmed mean target intensity value (TGT) of each array arbitrarily set to 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Said,,Assou
| | Sample_contact_email | said.assou@inserm.fr
| | Sample_contact_institute | INSERM
| | Sample_contact_address | 80, Av. Augustin Flich
| | Sample_contact_city | Montpellier
| | Sample_contact_zip/postal_code | 34000
| | Sample_contact_country | France
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM785nnn/GSM785946/suppl/GSM785946.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM785nnn/GSM785946/suppl/GSM785946.CHP.gz
| | Sample_series_id | GSE31681
| | Sample_data_row_count | 54675
| | |
|
GSM785951 | GPL570 |
|
Cumulus cells-MI-FE11
|
Cumulus cells-MI
|
tissue: ovary
cell type: cumulus cells
|
Human cumulus cells was mechanically separated from oocytes and lysed for RNA extraction
|
| Sample_geo_accession | GSM785951
| | Sample_status | Public on Mar 10 2012
| | Sample_submission_date | Aug 25 2011
| | Sample_last_update_date | Mar 10 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated using RNeasy micro kits (Qiagen) according to the manufacturer's instructions and quantified using a NanoDrop spectrophotometer
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Complementary RNA (cRNA) was prepared according to the manufacturer’s (Affymetrix) protocol “3’ IVT express protocol”, starting from 100 ng total RNA
| | Sample_hyb_protocol | Following fragmentation, cRNA was hybridized for 16 hr at 45C on the GeneChip Human U133 plus 2.0 array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000 7G
| | Sample_data_processing | Data were analyzed with the GCOS 1.2 software (Affymetrix), using the default analysis settings and global scaling as normalization method, with a trimmed mean target intensity value (TGT) of each array arbitrarily set to 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Said,,Assou
| | Sample_contact_email | said.assou@inserm.fr
| | Sample_contact_institute | INSERM
| | Sample_contact_address | 80, Av. Augustin Flich
| | Sample_contact_city | Montpellier
| | Sample_contact_zip/postal_code | 34000
| | Sample_contact_country | France
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM785nnn/GSM785951/suppl/GSM785951.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM785nnn/GSM785951/suppl/GSM785951.CHP.gz
| | Sample_series_id | GSE31681
| | Sample_data_row_count | 54675
| | |
|
GSM785952 | GPL570 |
|
Cumulus cells-MI-GL2
|
Cumulus cells-MI
|
tissue: ovary
cell type: cumulus cells
|
Human cumulus cells was mechanically separated from oocytes and lysed for RNA extraction
|
| Sample_geo_accession | GSM785952
| | Sample_status | Public on Mar 10 2012
| | Sample_submission_date | Aug 25 2011
| | Sample_last_update_date | Mar 10 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated using RNeasy micro kits (Qiagen) according to the manufacturer's instructions and quantified using a NanoDrop spectrophotometer
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Complementary RNA (cRNA) was prepared according to the manufacturer’s (Affymetrix) protocol “3’ IVT express protocol”, starting from 100 ng total RNA
| | Sample_hyb_protocol | Following fragmentation, cRNA was hybridized for 16 hr at 45C on the GeneChip Human U133 plus 2.0 array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000 7G
| | Sample_data_processing | Data were analyzed with the GCOS 1.2 software (Affymetrix), using the default analysis settings and global scaling as normalization method, with a trimmed mean target intensity value (TGT) of each array arbitrarily set to 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Said,,Assou
| | Sample_contact_email | said.assou@inserm.fr
| | Sample_contact_institute | INSERM
| | Sample_contact_address | 80, Av. Augustin Flich
| | Sample_contact_city | Montpellier
| | Sample_contact_zip/postal_code | 34000
| | Sample_contact_country | France
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM785nnn/GSM785952/suppl/GSM785952.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM785nnn/GSM785952/suppl/GSM785952.CHP.gz
| | Sample_series_id | GSE31681
| | Sample_data_row_count | 54675
| | |
|
GSM785953 | GPL570 |
|
Cumulus cells-MI-MS3
|
Cumulus cells-MI
|
tissue: ovary
cell type: cumulus cells
|
Human cumulus cells was mechanically separated from oocytes and lysed for RNA extraction
|
| Sample_geo_accession | GSM785953
| | Sample_status | Public on Mar 10 2012
| | Sample_submission_date | Aug 25 2011
| | Sample_last_update_date | Mar 10 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated using RNeasy micro kits (Qiagen) according to the manufacturer's instructions and quantified using a NanoDrop spectrophotometer
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Complementary RNA (cRNA) was prepared according to the manufacturer’s (Affymetrix) protocol “3’ IVT express protocol”, starting from 100 ng total RNA
| | Sample_hyb_protocol | Following fragmentation, cRNA was hybridized for 16 hr at 45C on the GeneChip Human U133 plus 2.0 array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000 7G
| | Sample_data_processing | Data were analyzed with the GCOS 1.2 software (Affymetrix), using the default analysis settings and global scaling as normalization method, with a trimmed mean target intensity value (TGT) of each array arbitrarily set to 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Said,,Assou
| | Sample_contact_email | said.assou@inserm.fr
| | Sample_contact_institute | INSERM
| | Sample_contact_address | 80, Av. Augustin Flich
| | Sample_contact_city | Montpellier
| | Sample_contact_zip/postal_code | 34000
| | Sample_contact_country | France
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM785nnn/GSM785953/suppl/GSM785953.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM785nnn/GSM785953/suppl/GSM785953.CHP.gz
| | Sample_series_id | GSE31681
| | Sample_data_row_count | 54675
| | |
|
GSM785954 | GPL570 |
|
Cumulus cells-MI-P2-2
|
Cumulus cells-MI
|
tissue: ovary
cell type: cumulus cells
|
Human cumulus cells was mechanically separated from oocytes and lysed for RNA extraction
|
| Sample_geo_accession | GSM785954
| | Sample_status | Public on Mar 10 2012
| | Sample_submission_date | Aug 25 2011
| | Sample_last_update_date | Mar 10 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated using RNeasy micro kits (Qiagen) according to the manufacturer's instructions and quantified using a NanoDrop spectrophotometer
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Complementary RNA (cRNA) was prepared according to the manufacturer’s (Affymetrix) protocol “3’ IVT express protocol”, starting from 100 ng total RNA
| | Sample_hyb_protocol | Following fragmentation, cRNA was hybridized for 16 hr at 45C on the GeneChip Human U133 plus 2.0 array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000 7G
| | Sample_data_processing | Data were analyzed with the GCOS 1.2 software (Affymetrix), using the default analysis settings and global scaling as normalization method, with a trimmed mean target intensity value (TGT) of each array arbitrarily set to 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Said,,Assou
| | Sample_contact_email | said.assou@inserm.fr
| | Sample_contact_institute | INSERM
| | Sample_contact_address | 80, Av. Augustin Flich
| | Sample_contact_city | Montpellier
| | Sample_contact_zip/postal_code | 34000
| | Sample_contact_country | France
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM785nnn/GSM785954/suppl/GSM785954.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM785nnn/GSM785954/suppl/GSM785954.CHP.gz
| | Sample_series_id | GSE31681
| | Sample_data_row_count | 54675
| | |
|
GSM785955 | GPL570 |
|
Cumulus cells-MII-BP5
|
Cumulus cells-MII
|
tissue: ovary
cell type: cumulus cells
|
Human cumulus cells was mechanically separated from oocytes and lysed for RNA extraction
|
| Sample_geo_accession | GSM785955
| | Sample_status | Public on Mar 10 2012
| | Sample_submission_date | Aug 25 2011
| | Sample_last_update_date | Mar 10 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated using RNeasy micro kits (Qiagen) according to the manufacturer's instructions and quantified using a NanoDrop spectrophotometer
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Complementary RNA (cRNA) was prepared according to the manufacturer’s (Affymetrix) protocol “3’ IVT express protocol”, starting from 100 ng total RNA
| | Sample_hyb_protocol | Following fragmentation, cRNA was hybridized for 16 hr at 45C on the GeneChip Human U133 plus 2.0 array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000 7G
| | Sample_data_processing | Data were analyzed with the GCOS 1.2 software (Affymetrix), using the default analysis settings and global scaling as normalization method, with a trimmed mean target intensity value (TGT) of each array arbitrarily set to 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Said,,Assou
| | Sample_contact_email | said.assou@inserm.fr
| | Sample_contact_institute | INSERM
| | Sample_contact_address | 80, Av. Augustin Flich
| | Sample_contact_city | Montpellier
| | Sample_contact_zip/postal_code | 34000
| | Sample_contact_country | France
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM785nnn/GSM785955/suppl/GSM785955.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM785nnn/GSM785955/suppl/GSM785955.CHP.gz
| | Sample_series_id | GSE31681
| | Sample_data_row_count | 54675
| | |
|
GSM785956 | GPL570 |
|
Cumulus cells-MII-FS8
|
Cumulus cells-MII
|
tissue: ovary
cell type: cumulus cells
|
Human cumulus cells was mechanically separated from oocytes and lysed for RNA extraction
|
| Sample_geo_accession | GSM785956
| | Sample_status | Public on Mar 10 2012
| | Sample_submission_date | Aug 25 2011
| | Sample_last_update_date | Mar 10 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated using RNeasy micro kits (Qiagen) according to the manufacturer's instructions and quantified using a NanoDrop spectrophotometer
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Complementary RNA (cRNA) was prepared according to the manufacturer’s (Affymetrix) protocol “3’ IVT express protocol”, starting from 100 ng total RNA
| | Sample_hyb_protocol | Following fragmentation, cRNA was hybridized for 16 hr at 45C on the GeneChip Human U133 plus 2.0 array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000 7G
| | Sample_data_processing | Data were analyzed with the GCOS 1.2 software (Affymetrix), using the default analysis settings and global scaling as normalization method, with a trimmed mean target intensity value (TGT) of each array arbitrarily set to 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Said,,Assou
| | Sample_contact_email | said.assou@inserm.fr
| | Sample_contact_institute | INSERM
| | Sample_contact_address | 80, Av. Augustin Flich
| | Sample_contact_city | Montpellier
| | Sample_contact_zip/postal_code | 34000
| | Sample_contact_country | France
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM785nnn/GSM785956/suppl/GSM785956.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM785nnn/GSM785956/suppl/GSM785956.CHP.gz
| | Sample_series_id | GSE31681
| | Sample_data_row_count | 54675
| | |
|
GSM785957 | GPL570 |
|
Cumulus cells-MII-OZ2
|
Cumulus cells-MII
|
tissue: ovary
cell type: cumulus cells
|
Human cumulus cells was mechanically separated from oocytes and lysed for RNA extraction
|
| Sample_geo_accession | GSM785957
| | Sample_status | Public on Mar 10 2012
| | Sample_submission_date | Aug 25 2011
| | Sample_last_update_date | Mar 10 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated using RNeasy micro kits (Qiagen) according to the manufacturer's instructions and quantified using a NanoDrop spectrophotometer
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Complementary RNA (cRNA) was prepared according to the manufacturer’s (Affymetrix) protocol “3’ IVT express protocol”, starting from 100 ng total RNA
| | Sample_hyb_protocol | Following fragmentation, cRNA was hybridized for 16 hr at 45C on the GeneChip Human U133 plus 2.0 array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000 7G
| | Sample_data_processing | Data were analyzed with the GCOS 1.2 software (Affymetrix), using the default analysis settings and global scaling as normalization method, with a trimmed mean target intensity value (TGT) of each array arbitrarily set to 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Said,,Assou
| | Sample_contact_email | said.assou@inserm.fr
| | Sample_contact_institute | INSERM
| | Sample_contact_address | 80, Av. Augustin Flich
| | Sample_contact_city | Montpellier
| | Sample_contact_zip/postal_code | 34000
| | Sample_contact_country | France
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM785nnn/GSM785957/suppl/GSM785957.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM785nnn/GSM785957/suppl/GSM785957.CHP.gz
| | Sample_series_id | GSE31681
| | Sample_data_row_count | 54675
| | |
|
GSM785958 | GPL570 |
|
Cumulus cells-MII-TH10
|
Cumulus cells-MII
|
tissue: ovary
cell type: cumulus cells
|
Human cumulus cells was mechanically separated from oocytes and lysed for RNA extraction
|
| Sample_geo_accession | GSM785958
| | Sample_status | Public on Mar 10 2012
| | Sample_submission_date | Aug 25 2011
| | Sample_last_update_date | Mar 10 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated using RNeasy micro kits (Qiagen) according to the manufacturer's instructions and quantified using a NanoDrop spectrophotometer
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Complementary RNA (cRNA) was prepared according to the manufacturer’s (Affymetrix) protocol “3’ IVT express protocol”, starting from 100 ng total RNA
| | Sample_hyb_protocol | Following fragmentation, cRNA was hybridized for 16 hr at 45C on the GeneChip Human U133 plus 2.0 array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000 7G
| | Sample_data_processing | Data were analyzed with the GCOS 1.2 software (Affymetrix), using the default analysis settings and global scaling as normalization method, with a trimmed mean target intensity value (TGT) of each array arbitrarily set to 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Said,,Assou
| | Sample_contact_email | said.assou@inserm.fr
| | Sample_contact_institute | INSERM
| | Sample_contact_address | 80, Av. Augustin Flich
| | Sample_contact_city | Montpellier
| | Sample_contact_zip/postal_code | 34000
| | Sample_contact_country | France
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM785nnn/GSM785958/suppl/GSM785958.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM785nnn/GSM785958/suppl/GSM785958.CHP.gz
| | Sample_series_id | GSE31681
| | Sample_data_row_count | 54675
| | |
|
GSM785959 | GPL570 |
|
Cumulus cells-MII-1
|
Cumulus cells-MII
|
tissue: ovary
cell type: cumulus cells
|
Human cumulus cells was mechanically separated from oocytes and lysed for RNA extraction
|
| Sample_geo_accession | GSM785959
| | Sample_status | Public on Mar 10 2012
| | Sample_submission_date | Aug 25 2011
| | Sample_last_update_date | Mar 10 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated using RNeasy micro kits (Qiagen) according to the manufacturer's instructions and quantified using a NanoDrop spectrophotometer
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Complementary RNA (cRNA) was prepared according to the manufacturer’s (Affymetrix) protocol “3’ IVT express protocol”, starting from 100 ng total RNA
| | Sample_hyb_protocol | Following fragmentation, cRNA was hybridized for 16 hr at 45C on the GeneChip Human U133 plus 2.0 array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000 7G
| | Sample_data_processing | Data were analyzed with the GCOS 1.2 software (Affymetrix), using the default analysis settings and global scaling as normalization method, with a trimmed mean target intensity value (TGT) of each array arbitrarily set to 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Said,,Assou
| | Sample_contact_email | said.assou@inserm.fr
| | Sample_contact_institute | INSERM
| | Sample_contact_address | 80, Av. Augustin Flich
| | Sample_contact_city | Montpellier
| | Sample_contact_zip/postal_code | 34000
| | Sample_contact_country | France
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM785nnn/GSM785959/suppl/GSM785959.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM785nnn/GSM785959/suppl/GSM785959.CHP.gz
| | Sample_series_id | GSE31681
| | Sample_data_row_count | 54675
| | |
|
GSM785960 | GPL570 |
|
Cumulus cells-MII-2
|
Cumulus cells-MII
|
tissue: ovary
cell type: cumulus cells
|
Human cumulus cells was mechanically separated from oocytes and lysed for RNA extraction
|
| Sample_geo_accession | GSM785960
| | Sample_status | Public on Mar 10 2012
| | Sample_submission_date | Aug 25 2011
| | Sample_last_update_date | Mar 10 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated using RNeasy micro kits (Qiagen) according to the manufacturer's instructions and quantified using a NanoDrop spectrophotometer
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Complementary RNA (cRNA) was prepared according to the manufacturer’s (Affymetrix) protocol “3’ IVT express protocol”, starting from 100 ng total RNA
| | Sample_hyb_protocol | Following fragmentation, cRNA was hybridized for 16 hr at 45C on the GeneChip Human U133 plus 2.0 array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000 7G
| | Sample_data_processing | Data were analyzed with the GCOS 1.2 software (Affymetrix), using the default analysis settings and global scaling as normalization method, with a trimmed mean target intensity value (TGT) of each array arbitrarily set to 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Said,,Assou
| | Sample_contact_email | said.assou@inserm.fr
| | Sample_contact_institute | INSERM
| | Sample_contact_address | 80, Av. Augustin Flich
| | Sample_contact_city | Montpellier
| | Sample_contact_zip/postal_code | 34000
| | Sample_contact_country | France
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM785nnn/GSM785960/suppl/GSM785960.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM785nnn/GSM785960/suppl/GSM785960.CHP.gz
| | Sample_series_id | GSE31681
| | Sample_data_row_count | 54675
| | |
|
GSM786016 | GPL570 |
|
Cumulus cells-MII-P2-rep2
|
Cumulus cells-MII
|
tissue: ovary
cell type: cumulus cells
|
Human cumulus cells was mechanically separated from oocytes and lysed for RNA extraction
|
| Sample_geo_accession | GSM786016
| | Sample_status | Public on Mar 10 2012
| | Sample_submission_date | Aug 25 2011
| | Sample_last_update_date | Mar 10 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated using RNeasy micro kits (Qiagen) according to the manufacturer's instructions and quantified using a NanoDrop spectrophotometer
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Complementary RNA (cRNA) was prepared according to the manufacturer’s (Affymetrix) protocol “3’ IVT express protocol”, starting from 100 ng total RNA
| | Sample_hyb_protocol | Following fragmentation, cRNA was hybridized for 16 hr at 45C on the GeneChip Human U133 plus 2.0 array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000 7G
| | Sample_data_processing | Data were analyzed with the GCOS 1.2 software (Affymetrix), using the default analysis settings and global scaling as normalization method, with a trimmed mean target intensity value (TGT) of each array arbitrarily set to 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Said,,Assou
| | Sample_contact_email | said.assou@inserm.fr
| | Sample_contact_institute | INSERM
| | Sample_contact_address | 80, Av. Augustin Flich
| | Sample_contact_city | Montpellier
| | Sample_contact_zip/postal_code | 34000
| | Sample_contact_country | France
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM786nnn/GSM786016/suppl/GSM786016.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM786nnn/GSM786016/suppl/GSM786016.CHP.gz
| | Sample_series_id | GSE31681
| | Sample_data_row_count | 54675
| | |
|
GSM786017 | GPL570 |
|
Cumulus cells-MII-P3-rep2
|
Cumulus cells-MII
|
tissue: ovary
cell type: cumulus cells
|
Human cumulus cells was mechanically separated from oocytes and lysed for RNA extraction
|
| Sample_geo_accession | GSM786017
| | Sample_status | Public on Mar 10 2012
| | Sample_submission_date | Aug 25 2011
| | Sample_last_update_date | Mar 10 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated using RNeasy micro kits (Qiagen) according to the manufacturer's instructions and quantified using a NanoDrop spectrophotometer
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Complementary RNA (cRNA) was prepared according to the manufacturer’s (Affymetrix) protocol “3’ IVT express protocol”, starting from 100 ng total RNA
| | Sample_hyb_protocol | Following fragmentation, cRNA was hybridized for 16 hr at 45C on the GeneChip Human U133 plus 2.0 array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000 7G
| | Sample_data_processing | Data were analyzed with the GCOS 1.2 software (Affymetrix), using the default analysis settings and global scaling as normalization method, with a trimmed mean target intensity value (TGT) of each array arbitrarily set to 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Said,,Assou
| | Sample_contact_email | said.assou@inserm.fr
| | Sample_contact_institute | INSERM
| | Sample_contact_address | 80, Av. Augustin Flich
| | Sample_contact_city | Montpellier
| | Sample_contact_zip/postal_code | 34000
| | Sample_contact_country | France
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM786nnn/GSM786017/suppl/GSM786017.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM786nnn/GSM786017/suppl/GSM786017.CHP.gz
| | Sample_series_id | GSE31681
| | Sample_data_row_count | 54675
| | |
|
| |
| |
Make groups for comparisons |
(2 groups will be compared at a time) |
|
| Select GSMs and click on "Add groups" |
Enter the group name here: |
|
|
|
