Search results for the GEO ID: GSE31730 |
(Click on the check boxes provided under "Select for analysis", to initiate grouping) |
(Once the selection is made, click on "Add groups" in "Make groups for comparison", to make a group. Scroll down) |
|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM787696 | GPL1261 |
|
bulge
|
bulge
|
strain: C57Bl6
age: 21d
cell type: bulge
|
|
Sample_geo_accession | GSM787696
| Sample_status | Public on Jan 01 2012
| Sample_submission_date | Aug 29 2011
| Sample_last_update_date | Jan 01 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_treatment_protocol_ch1 | skin was embedded in OCT, frozen in liquid nitrogen, cutted on a cryostat and stained with eosin
| Sample_growth_protocol_ch1 | 21d old mice were used
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | tissue samples were dissected with a mCut Laser Microdissection System, RNA was isolated using the PicoPureTM Isolation Kit (Arcturus)
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | 30 ng of total RNA were amplified using the MessageAmpTM II aRNA kit (Ambion)
| Sample_hyb_protocol | cDNA was hybridized to Affymetrix Mouse Genome 430 2.0 arrays
| Sample_scan_protocol | Affymetrix M10 version 1.0
| Sample_data_processing | R, Bioconductor, GCRMA package
| Sample_platform_id | GPL1261
| Sample_contact_name | Joerg,,Huelsken
| Sample_contact_institute | EPFL
| Sample_contact_address | Station 19
| Sample_contact_city | Lausanne
| Sample_contact_zip/postal_code | 1015
| Sample_contact_country | Switzerland
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM787nnn/GSM787696/suppl/GSM787696_bulge.CEL.gz
| Sample_series_id | GSE31730
| Sample_data_row_count | 45101
| |
|
GSM787697 | GPL1261 |
|
hairshaft
|
hairshaft
|
strain: C57Bl6
age: 21d
cell type: hairshaft
|
|
Sample_geo_accession | GSM787697
| Sample_status | Public on Jan 01 2012
| Sample_submission_date | Aug 29 2011
| Sample_last_update_date | Jan 01 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_treatment_protocol_ch1 | skin was embedded in OCT, frozen in liquid nitrogen, cutted on a cryostat and stained with eosin
| Sample_growth_protocol_ch1 | 21d old mice were used
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | tissue samples were dissected with a mCut Laser Microdissection System, RNA was isolated using the PicoPureTM Isolation Kit (Arcturus)
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | 30 ng of total RNA were amplified using the MessageAmpTM II aRNA kit (Ambion)
| Sample_hyb_protocol | cDNA was hybridized to Affymetrix Mouse Genome 430 2.0 arrays
| Sample_scan_protocol | Affymetrix M10 version 1.0
| Sample_data_processing | R, Bioconductor, GCRMA package
| Sample_platform_id | GPL1261
| Sample_contact_name | Joerg,,Huelsken
| Sample_contact_institute | EPFL
| Sample_contact_address | Station 19
| Sample_contact_city | Lausanne
| Sample_contact_zip/postal_code | 1015
| Sample_contact_country | Switzerland
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM787nnn/GSM787697/suppl/GSM787697_hairshaft.CEL.gz
| Sample_series_id | GSE31730
| Sample_data_row_count | 45101
| |
|
|
|
Make groups for comparisons |
(2 groups will be compared at a time) |
|
Select GSMs and click on "Add groups" |
Enter the group name here: |
|
|
|
Select expression type |
Transcripts profile based on; |
A. Differential status (Up/Down regulation) |
|
|
Regulation type |
|
Fold change |
|
p-value |
|
|
|
B. Absolute calls (Transcribed/Not-detected) |
|
|
Derive calls within/across groups |
Within groups |
|
|
Detection status |
|
Percentage detection |
|
|
Across groups |
|
|
Detection status |
First group: |
- |
Second group:
|
Percentage detection |
First group: |
- |
Second group:
|
|
|
|
Filter results by number of probes |
|
|