Search results for the GEO ID: GSE31744  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM787918 | GPL1261 |
|
Flk-1+/Etv2-rep1
|
Etv2-Venus ES Day5OP9
|
cell-line: TT2
|
D5Etv2Ven+/-ESFlk-1+/Etv2-
|
| Sample_geo_accession | GSM787918
| | Sample_status | Public on Aug 31 2011
| | Sample_submission_date | Aug 30 2011
| | Sample_last_update_date | Aug 31 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Diffrerntiated Flk-1+ cells were separately sorted into Flk-1+/Etv2- (P3) and Flk-1+/Etv2+ (P4) populations
| | Sample_growth_protocol_ch1 | Etv2-Venus knock-in Het ES cells differentiated to Flk-1+ cells.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Extract RNA from sorted cells using Micro-elute RNA extraction Kit (Qiagen)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | The 3'IVT Express Kit was used for biotin labeling according to manufacturer's instructions (Affymetrix)
| | Sample_hyb_protocol | RNA was subsequently fragmented and hybridized to the GeneChip according to manufacturer’s instructions. GeneChips were washed and stained in the Affymetrix Fluidics Station 450
| | Sample_scan_protocol | The microarray image data were processed with the GeneChip Scanner 3000 (Affymetrix).
| | Sample_data_processing | The raw data were summarized with the RMA algorithm using the R/Bioconductor package (R version 2.8.0, Bioconductor version 2.3).
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Hiroshi,,Kataoka
| | Sample_contact_email | kataokah@cdb.riken.jp
| | Sample_contact_phone | 81-78-306-1893
| | Sample_contact_fax | 81-78-306-1895
| | Sample_contact_laboratory | Nishikawa
| | Sample_contact_department | Stem Cell Biology
| | Sample_contact_institute | RIKEN CDB
| | Sample_contact_address | 2-2-3Minamimachi-Minatojima
| | Sample_contact_city | Kobe
| | Sample_contact_state | Hyogo
| | Sample_contact_zip/postal_code | 650-0047
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM787nnn/GSM787918/suppl/GSM787918.CEL.gz
| | Sample_series_id | GSE31743
| | Sample_series_id | GSE31744
| | Sample_data_row_count | 45101
| | |
|
GSM787919 | GPL1261 |
|
Flk-1+/Etv2-rep2
|
Etv2-Venus ES Day5OP9
|
cell-line: TT2
|
D5Etv2Ven+/-ESFlk-1+/Etv2-
|
| Sample_geo_accession | GSM787919
| | Sample_status | Public on Aug 31 2011
| | Sample_submission_date | Aug 30 2011
| | Sample_last_update_date | Aug 31 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Diffrerntiated Flk-1+ cells were separately sorted into Flk-1+/Etv2- (P3) and Flk-1+/Etv2+ (P4) populations
| | Sample_growth_protocol_ch1 | Etv2-Venus knock-in Het ES cells differentiated to Flk-1+ cells.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Extract RNA from sorted cells using Micro-elute RNA extraction Kit (Qiagen)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | The 3'IVT Express Kit was used for biotin labeling according to manufacturer's instructions (Affymetrix)
| | Sample_hyb_protocol | RNA was subsequently fragmented and hybridized to the GeneChip according to manufacturer’s instructions. GeneChips were washed and stained in the Affymetrix Fluidics Station 450
| | Sample_scan_protocol | The microarray image data were processed with the GeneChip Scanner 3000 (Affymetrix).
| | Sample_data_processing | The raw data were summarized with the RMA algorithm using the R/Bioconductor package (R version 2.8.0, Bioconductor version 2.3).
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Hiroshi,,Kataoka
| | Sample_contact_email | kataokah@cdb.riken.jp
| | Sample_contact_phone | 81-78-306-1893
| | Sample_contact_fax | 81-78-306-1895
| | Sample_contact_laboratory | Nishikawa
| | Sample_contact_department | Stem Cell Biology
| | Sample_contact_institute | RIKEN CDB
| | Sample_contact_address | 2-2-3Minamimachi-Minatojima
| | Sample_contact_city | Kobe
| | Sample_contact_state | Hyogo
| | Sample_contact_zip/postal_code | 650-0047
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM787nnn/GSM787919/suppl/GSM787919.CEL.gz
| | Sample_series_id | GSE31743
| | Sample_series_id | GSE31744
| | Sample_data_row_count | 45101
| | |
|
GSM787920 | GPL1261 |
|
Flk-1+/Etv2+rep1
|
Etv2-Venus ES Day5OP9
|
cell-line: TT2
|
D5Etv2Ven+/-ESFlk-1+/Etv2+
|
| Sample_geo_accession | GSM787920
| | Sample_status | Public on Aug 31 2011
| | Sample_submission_date | Aug 30 2011
| | Sample_last_update_date | Aug 31 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Diffrerntiated Flk-1+ cells were separately sorted into Flk-1+/Etv2- (P3) and Flk-1+/Etv2+ (P4) populations
| | Sample_growth_protocol_ch1 | Etv2-Venus knock-in Het ES cells differentiated to Flk-1+ cells.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Extract RNA from sorted cells using Micro-elute RNA extraction Kit (Qiagen)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | The 3'IVT Express Kit was used for biotin labeling according to manufacturer's instructions (Affymetrix)
| | Sample_hyb_protocol | RNA was subsequently fragmented and hybridized to the GeneChip according to manufacturer’s instructions. GeneChips were washed and stained in the Affymetrix Fluidics Station 450
| | Sample_scan_protocol | The microarray image data were processed with the GeneChip Scanner 3000 (Affymetrix).
| | Sample_data_processing | The raw data were summarized with the RMA algorithm using the R/Bioconductor package (R version 2.8.0, Bioconductor version 2.3).
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Hiroshi,,Kataoka
| | Sample_contact_email | kataokah@cdb.riken.jp
| | Sample_contact_phone | 81-78-306-1893
| | Sample_contact_fax | 81-78-306-1895
| | Sample_contact_laboratory | Nishikawa
| | Sample_contact_department | Stem Cell Biology
| | Sample_contact_institute | RIKEN CDB
| | Sample_contact_address | 2-2-3Minamimachi-Minatojima
| | Sample_contact_city | Kobe
| | Sample_contact_state | Hyogo
| | Sample_contact_zip/postal_code | 650-0047
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM787nnn/GSM787920/suppl/GSM787920.CEL.gz
| | Sample_series_id | GSE31743
| | Sample_series_id | GSE31744
| | Sample_data_row_count | 45101
| | |
|
GSM787921 | GPL1261 |
|
Flk-1+/Etv2+rep2
|
Etv2-Venus ES Day5OP9
|
cell-line: TT2
|
D5Etv2Ven+/-ESFlk-1+/Etv2+
|
| Sample_geo_accession | GSM787921
| | Sample_status | Public on Aug 31 2011
| | Sample_submission_date | Aug 30 2011
| | Sample_last_update_date | Aug 31 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Diffrerntiated Flk-1+ cells were separately sorted into Flk-1+/Etv2- (P3) and Flk-1+/Etv2+ (P4) populations
| | Sample_growth_protocol_ch1 | Etv2-Venus knock-in Het ES cells differentiated to Flk-1+ cells.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Extract RNA from sorted cells using Micro-elute RNA extraction Kit (Qiagen)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | The 3'IVT Express Kit was used for biotin labeling according to manufacturer's instructions (Affymetrix)
| | Sample_hyb_protocol | RNA was subsequently fragmented and hybridized to the GeneChip according to manufacturer’s instructions. GeneChips were washed and stained in the Affymetrix Fluidics Station 450
| | Sample_scan_protocol | The microarray image data were processed with the GeneChip Scanner 3000 (Affymetrix).
| | Sample_data_processing | The raw data were summarized with the RMA algorithm using the R/Bioconductor package (R version 2.8.0, Bioconductor version 2.3).
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Hiroshi,,Kataoka
| | Sample_contact_email | kataokah@cdb.riken.jp
| | Sample_contact_phone | 81-78-306-1893
| | Sample_contact_fax | 81-78-306-1895
| | Sample_contact_laboratory | Nishikawa
| | Sample_contact_department | Stem Cell Biology
| | Sample_contact_institute | RIKEN CDB
| | Sample_contact_address | 2-2-3Minamimachi-Minatojima
| | Sample_contact_city | Kobe
| | Sample_contact_state | Hyogo
| | Sample_contact_zip/postal_code | 650-0047
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM787nnn/GSM787921/suppl/GSM787921.CEL.gz
| | Sample_series_id | GSE31743
| | Sample_series_id | GSE31744
| | Sample_data_row_count | 45101
| | |
|
GSM787922 | GPL1261 |
|
HetFlk-1PRa+(DP)rep1
|
HetFlk-1PRa+(DP)ES
|
cell-line: TT2
|
Day5HetFlk-1PRa+(DP)ES
|
| Sample_geo_accession | GSM787922
| | Sample_status | Public on Aug 31 2011
| | Sample_submission_date | Aug 30 2011
| | Sample_last_update_date | Aug 31 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | ES cells( Etv2+/- vs. -/- ) differentiated to Flk-1+/PDGFRa+ (DP)cells.
| | Sample_growth_protocol_ch1 | Etv2+/- and -/- ES cells differentiated to Flk-1+ cells. Flk-1+/PDGFRa+ (DP)cells were sorted to compare gene expression in Etv2+/- or -/- DP cells.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Extract RNA from sorted cells using Micro-elute RNA extraction Kit (Qiagen)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | The 3'IVT Express Kit was used for biotin labeling according to manufacturer's instructions (Affymetrix)
| | Sample_hyb_protocol | RNA was subsequently fragmented and hybridized to the GeneChip according to manufacturer’s instructions. GeneChips were washed and stained in the Affymetrix Fluidics Station 450
| | Sample_scan_protocol | The microarray image data were processed with the GeneChip Scanner 3000 (Affymetrix).
| | Sample_data_processing | The raw data were summarized with the RMA algorithm using the R/Bioconductor package (R version 2.8.0, Bioconductor version 2.3).
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Hiroshi,,Kataoka
| | Sample_contact_email | kataokah@cdb.riken.jp
| | Sample_contact_phone | 81-78-306-1893
| | Sample_contact_fax | 81-78-306-1895
| | Sample_contact_laboratory | Nishikawa
| | Sample_contact_department | Stem Cell Biology
| | Sample_contact_institute | RIKEN CDB
| | Sample_contact_address | 2-2-3Minamimachi-Minatojima
| | Sample_contact_city | Kobe
| | Sample_contact_state | Hyogo
| | Sample_contact_zip/postal_code | 650-0047
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM787nnn/GSM787922/suppl/GSM787922.CEL.gz
| | Sample_series_id | GSE31744
| | Sample_data_row_count | 45101
| | |
|
GSM787923 | GPL1261 |
|
HetFlk-1PRa+(DP)rep2
|
HetFlk-1PRa+(DP)ES
|
cell-line: TT2
|
Day5 HetFlk-1PRa+(DP)ES
|
| Sample_geo_accession | GSM787923
| | Sample_status | Public on Aug 31 2011
| | Sample_submission_date | Aug 30 2011
| | Sample_last_update_date | Aug 31 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | ES cells( Etv2+/- vs. -/- ) differentiated to Flk-1+/PDGFRa+ (DP)cells.
| | Sample_growth_protocol_ch1 | Etv2+/- and -/- ES cells differentiated to Flk-1+ cells. Flk-1+/PDGFRa+ (DP)cells were sorted to compare gene expression in Etv2+/- or -/- DP cells.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Extract RNA from sorted cells using Micro-elute RNA extraction Kit (Qiagen)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | The 3'IVT Express Kit was used for biotin labeling according to manufacturer's instructions (Affymetrix)
| | Sample_hyb_protocol | RNA was subsequently fragmented and hybridized to the GeneChip according to manufacturer’s instructions. GeneChips were washed and stained in the Affymetrix Fluidics Station 450
| | Sample_scan_protocol | The microarray image data were processed with the GeneChip Scanner 3000 (Affymetrix).
| | Sample_data_processing | The raw data were summarized with the RMA algorithm using the R/Bioconductor package (R version 2.8.0, Bioconductor version 2.3).
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Hiroshi,,Kataoka
| | Sample_contact_email | kataokah@cdb.riken.jp
| | Sample_contact_phone | 81-78-306-1893
| | Sample_contact_fax | 81-78-306-1895
| | Sample_contact_laboratory | Nishikawa
| | Sample_contact_department | Stem Cell Biology
| | Sample_contact_institute | RIKEN CDB
| | Sample_contact_address | 2-2-3Minamimachi-Minatojima
| | Sample_contact_city | Kobe
| | Sample_contact_state | Hyogo
| | Sample_contact_zip/postal_code | 650-0047
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM787nnn/GSM787923/suppl/GSM787923.CEL.gz
| | Sample_series_id | GSE31744
| | Sample_data_row_count | 45101
| | |
|
GSM787924 | GPL1261 |
|
KO Flk-1PRa+(DP)rep1
|
KO Flk-1PRa+(DP)ES
|
cell-line: TT2
|
Day5KO Flk-1PRa+(DP)ES
|
| Sample_geo_accession | GSM787924
| | Sample_status | Public on Aug 31 2011
| | Sample_submission_date | Aug 30 2011
| | Sample_last_update_date | Aug 31 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | ES cells( Etv2+/- vs. -/- ) differentiated to Flk-1+/PDGFRa+ (DP)cells.
| | Sample_growth_protocol_ch1 | Etv2+/- and -/- ES cells differentiated to Flk-1+ cells. Flk-1+/PDGFRa+ (DP)cells were sorted to compare gene expression in Etv2+/- or -/- DP cells.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Extract RNA from sorted cells using Micro-elute RNA extraction Kit (Qiagen)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | The 3'IVT Express Kit was used for biotin labeling according to manufacturer's instructions (Affymetrix)
| | Sample_hyb_protocol | RNA was subsequently fragmented and hybridized to the GeneChip according to manufacturer’s instructions. GeneChips were washed and stained in the Affymetrix Fluidics Station 450
| | Sample_scan_protocol | The microarray image data were processed with the GeneChip Scanner 3000 (Affymetrix).
| | Sample_data_processing | The raw data were summarized with the RMA algorithm using the R/Bioconductor package (R version 2.8.0, Bioconductor version 2.3).
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Hiroshi,,Kataoka
| | Sample_contact_email | kataokah@cdb.riken.jp
| | Sample_contact_phone | 81-78-306-1893
| | Sample_contact_fax | 81-78-306-1895
| | Sample_contact_laboratory | Nishikawa
| | Sample_contact_department | Stem Cell Biology
| | Sample_contact_institute | RIKEN CDB
| | Sample_contact_address | 2-2-3Minamimachi-Minatojima
| | Sample_contact_city | Kobe
| | Sample_contact_state | Hyogo
| | Sample_contact_zip/postal_code | 650-0047
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM787nnn/GSM787924/suppl/GSM787924.CEL.gz
| | Sample_series_id | GSE31744
| | Sample_data_row_count | 45101
| | |
|
GSM787925 | GPL1261 |
|
KO Flk-1PRa+(DP)rep2
|
KO Flk-1PRa+(DP)ES
|
cell-line: TT2
|
Day5KO Flk-1PRa+(DP)ES
|
| Sample_geo_accession | GSM787925
| | Sample_status | Public on Aug 31 2011
| | Sample_submission_date | Aug 30 2011
| | Sample_last_update_date | Aug 31 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | ES cells( Etv2+/- vs. -/- ) differentiated to Flk-1+/PDGFRa+ (DP)cells.
| | Sample_growth_protocol_ch1 | Etv2+/- and -/- ES cells differentiated to Flk-1+ cells. Flk-1+/PDGFRa+ (DP)cells were sorted to compare gene expression in Etv2+/- or -/- DP cells.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Extract RNA from sorted cells using Micro-elute RNA extraction Kit (Qiagen)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | The 3'IVT Express Kit was used for biotin labeling according to manufacturer's instructions (Affymetrix)
| | Sample_hyb_protocol | RNA was subsequently fragmented and hybridized to the GeneChip according to manufacturer’s instructions. GeneChips were washed and stained in the Affymetrix Fluidics Station 450
| | Sample_scan_protocol | The microarray image data were processed with the GeneChip Scanner 3000 (Affymetrix).
| | Sample_data_processing | The raw data were summarized with the RMA algorithm using the R/Bioconductor package (R version 2.8.0, Bioconductor version 2.3).
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Hiroshi,,Kataoka
| | Sample_contact_email | kataokah@cdb.riken.jp
| | Sample_contact_phone | 81-78-306-1893
| | Sample_contact_fax | 81-78-306-1895
| | Sample_contact_laboratory | Nishikawa
| | Sample_contact_department | Stem Cell Biology
| | Sample_contact_institute | RIKEN CDB
| | Sample_contact_address | 2-2-3Minamimachi-Minatojima
| | Sample_contact_city | Kobe
| | Sample_contact_state | Hyogo
| | Sample_contact_zip/postal_code | 650-0047
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM787nnn/GSM787925/suppl/GSM787925.CEL.gz
| | Sample_series_id | GSE31744
| | Sample_data_row_count | 45101
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