Result

Search results for the GEO ID: GSE31752

(Click on the check boxes provided under "Select for analysis", to initiate grouping)

(Once the selection is made, click on "Add groups" in "Make groups for comparison", to make a group. Scroll down)

GSM ID

GPL ID

Select for analysis

Title

Source name

Description

Characteristics

GSM788005

GPL1261

Mig-6 f/f liver-1

Liver

genotype: Mig-6 f/f gender: Male age: 8 weeks old strain: mixed background

Gene expression data from Mig-6 f/f liver

Sample_geo_accession	GSM788005
Sample_status	Public on Aug 31 2011
Sample_submission_date	Aug 30 2011
Sample_last_update_date	Aug 31 2011
Sample_type	RNA
Sample_channel_count	1
Sample_organism_ch1	Mus musculus
Sample_taxid_ch1	10090
Sample_treatment_protocol_ch1	Eight week old Mig-6f/f and Mig-6d/d male mice were assessed after undergoing a 24 hour fast.
Sample_growth_protocol_ch1	Animals were maintained on a 12-h light/12-h dark cycle (0600 h/1800 h) and fed standard chow diet.
Sample_molecule_ch1	total RNA
Sample_extract_protocol_ch1	Total RNA was isolated using the Trizol reagent (Invitrogen, Carlsbad, CA) manufactures instructions as described.
Sample_label_ch1	biotin
Sample_label_protocol_ch1	Labeling was performed according to the manufactures instructions as described in the eukaryotic section of the GeneChip Expression Analysis Technical Manual (Affymetrix, 2004)
Sample_hyb_protocol	Hybridization was performed according to the manufactures instructions as described in the eukaryotic section of the GeneChip Expression Analysis Technical Manual (Affymetrix, 2004)
Sample_scan_protocol	Scanning was performed according to the manufactures instructions as described in the eukaryotic section of the GeneChip Expression Analysis Technical Manual (Affymetrix, 2004)
Sample_data_processing	All samples were defined using normalized dChIP values. We selected differentially expressed genes within each time exposure using two sample comparisons according to the following criteria lower bound of 90% confidence interval of fold change greater than 1.2 and an absolute value of difference between groups means greater than 50. After excluding expressed sequence tags with no functional annotation, differentially expressed genes were classified according to Gene Ontology function using Affymetrix annotation, literature search in PubMed, and Ingenuity Pathways Analysis (Ingenuity Systems Inc., Redwood City, CA).
Sample_platform_id	GPL1261
Sample_contact_name	TaeHoon,,Kim
Sample_contact_department	Department of Obstetrics, Gynecology & Reproductive Biology
Sample_contact_institute	Michigan State University College of Human Medicine
Sample_contact_address	333 Bostwick Avenue NE
Sample_contact_city	Grand Rapids
Sample_contact_state	Michigan
Sample_contact_zip/postal_code	49503
Sample_contact_country	USA
Sample_supplementary_file	ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM788nnn/GSM788005/suppl/GSM788005.CEL.gz
Sample_series_id	GSE31752
Sample_data_row_count	45101

GSM788006

GPL1261

Mig-6 f/f liver-2

Liver

genotype: Mig-6 f/f gender: Male age: 8 weeks old strain: mixed background

Gene expression data from Mig-6 f/f liver

Sample_geo_accession	GSM788006
Sample_status	Public on Aug 31 2011
Sample_submission_date	Aug 30 2011
Sample_last_update_date	Aug 31 2011
Sample_type	RNA
Sample_channel_count	1
Sample_organism_ch1	Mus musculus
Sample_taxid_ch1	10090
Sample_treatment_protocol_ch1	Eight week old Mig-6f/f and Mig-6d/d male mice were assessed after undergoing a 24 hour fast.
Sample_growth_protocol_ch1	Animals were maintained on a 12-h light/12-h dark cycle (0600 h/1800 h) and fed standard chow diet.
Sample_molecule_ch1	total RNA
Sample_extract_protocol_ch1	Total RNA was isolated using the Trizol reagent (Invitrogen, Carlsbad, CA) manufactures instructions as described.
Sample_label_ch1	biotin
Sample_label_protocol_ch1	Labeling was performed according to the manufactures instructions as described in the eukaryotic section of the GeneChip Expression Analysis Technical Manual (Affymetrix, 2004)
Sample_hyb_protocol	Hybridization was performed according to the manufactures instructions as described in the eukaryotic section of the GeneChip Expression Analysis Technical Manual (Affymetrix, 2004)
Sample_scan_protocol	Scanning was performed according to the manufactures instructions as described in the eukaryotic section of the GeneChip Expression Analysis Technical Manual (Affymetrix, 2004)
Sample_data_processing	All samples were defined using normalized dChIP values. We selected differentially expressed genes within each time exposure using two sample comparisons according to the following criteria lower bound of 90% confidence interval of fold change greater than 1.2 and an absolute value of difference between groups means greater than 50. After excluding expressed sequence tags with no functional annotation, differentially expressed genes were classified according to Gene Ontology function using Affymetrix annotation, literature search in PubMed, and Ingenuity Pathways Analysis (Ingenuity Systems Inc., Redwood City, CA).
Sample_platform_id	GPL1261
Sample_contact_name	TaeHoon,,Kim
Sample_contact_department	Department of Obstetrics, Gynecology & Reproductive Biology
Sample_contact_institute	Michigan State University College of Human Medicine
Sample_contact_address	333 Bostwick Avenue NE
Sample_contact_city	Grand Rapids
Sample_contact_state	Michigan
Sample_contact_zip/postal_code	49503
Sample_contact_country	USA
Sample_supplementary_file	ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM788nnn/GSM788006/suppl/GSM788006.CEL.gz
Sample_series_id	GSE31752
Sample_data_row_count	45101

GSM788007

GPL1261

Mig-6 f/f liver-3

Liver

genotype: Mig-6 f/f gender: Male age: 8 weeks old strain: mixed background

Gene expression data from Mig-6 f/f liver

Sample_geo_accession	GSM788007
Sample_status	Public on Aug 31 2011
Sample_submission_date	Aug 30 2011
Sample_last_update_date	Aug 31 2011
Sample_type	RNA
Sample_channel_count	1
Sample_organism_ch1	Mus musculus
Sample_taxid_ch1	10090
Sample_treatment_protocol_ch1	Eight week old Mig-6f/f and Mig-6d/d male mice were assessed after undergoing a 24 hour fast.
Sample_growth_protocol_ch1	Animals were maintained on a 12-h light/12-h dark cycle (0600 h/1800 h) and fed standard chow diet.
Sample_molecule_ch1	total RNA
Sample_extract_protocol_ch1	Total RNA was isolated using the Trizol reagent (Invitrogen, Carlsbad, CA) manufactures instructions as described.
Sample_label_ch1	biotin
Sample_label_protocol_ch1	Labeling was performed according to the manufactures instructions as described in the eukaryotic section of the GeneChip Expression Analysis Technical Manual (Affymetrix, 2004)
Sample_hyb_protocol	Hybridization was performed according to the manufactures instructions as described in the eukaryotic section of the GeneChip Expression Analysis Technical Manual (Affymetrix, 2004)
Sample_scan_protocol	Scanning was performed according to the manufactures instructions as described in the eukaryotic section of the GeneChip Expression Analysis Technical Manual (Affymetrix, 2004)
Sample_data_processing	All samples were defined using normalized dChIP values. We selected differentially expressed genes within each time exposure using two sample comparisons according to the following criteria lower bound of 90% confidence interval of fold change greater than 1.2 and an absolute value of difference between groups means greater than 50. After excluding expressed sequence tags with no functional annotation, differentially expressed genes were classified according to Gene Ontology function using Affymetrix annotation, literature search in PubMed, and Ingenuity Pathways Analysis (Ingenuity Systems Inc., Redwood City, CA).
Sample_platform_id	GPL1261
Sample_contact_name	TaeHoon,,Kim
Sample_contact_department	Department of Obstetrics, Gynecology & Reproductive Biology
Sample_contact_institute	Michigan State University College of Human Medicine
Sample_contact_address	333 Bostwick Avenue NE
Sample_contact_city	Grand Rapids
Sample_contact_state	Michigan
Sample_contact_zip/postal_code	49503
Sample_contact_country	USA
Sample_supplementary_file	ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM788nnn/GSM788007/suppl/GSM788007.CEL.gz
Sample_series_id	GSE31752
Sample_data_row_count	45101

GSM788008

GPL1261

Mig-6 d/d liver-1

Liver

genotype: Mig-6 d/d gender: Male age: 8 weeks old strain: mixed background

Gene expression data from Mig-6 d/d liver

Sample_geo_accession	GSM788008
Sample_status	Public on Aug 31 2011
Sample_submission_date	Aug 30 2011
Sample_last_update_date	Aug 31 2011
Sample_type	RNA
Sample_channel_count	1
Sample_organism_ch1	Mus musculus
Sample_taxid_ch1	10090
Sample_treatment_protocol_ch1	Eight week old Mig-6f/f and Mig-6d/d male mice were assessed after undergoing a 24 hour fast.
Sample_growth_protocol_ch1	Animals were maintained on a 12-h light/12-h dark cycle (0600 h/1800 h) and fed standard chow diet.
Sample_molecule_ch1	total RNA
Sample_extract_protocol_ch1	Total RNA was isolated using the Trizol reagent (Invitrogen, Carlsbad, CA) manufactures instructions as described.
Sample_label_ch1	biotin
Sample_label_protocol_ch1	Labeling was performed according to the manufactures instructions as described in the eukaryotic section of the GeneChip Expression Analysis Technical Manual (Affymetrix, 2004)
Sample_hyb_protocol	Hybridization was performed according to the manufactures instructions as described in the eukaryotic section of the GeneChip Expression Analysis Technical Manual (Affymetrix, 2004)
Sample_scan_protocol	Scanning was performed according to the manufactures instructions as described in the eukaryotic section of the GeneChip Expression Analysis Technical Manual (Affymetrix, 2004)
Sample_data_processing	All samples were defined using normalized dChIP values. We selected differentially expressed genes within each time exposure using two sample comparisons according to the following criteria lower bound of 90% confidence interval of fold change greater than 1.2 and an absolute value of difference between groups means greater than 50. After excluding expressed sequence tags with no functional annotation, differentially expressed genes were classified according to Gene Ontology function using Affymetrix annotation, literature search in PubMed, and Ingenuity Pathways Analysis (Ingenuity Systems Inc., Redwood City, CA).
Sample_platform_id	GPL1261
Sample_contact_name	TaeHoon,,Kim
Sample_contact_department	Department of Obstetrics, Gynecology & Reproductive Biology
Sample_contact_institute	Michigan State University College of Human Medicine
Sample_contact_address	333 Bostwick Avenue NE
Sample_contact_city	Grand Rapids
Sample_contact_state	Michigan
Sample_contact_zip/postal_code	49503
Sample_contact_country	USA
Sample_supplementary_file	ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM788nnn/GSM788008/suppl/GSM788008.CEL.gz
Sample_series_id	GSE31752
Sample_data_row_count	45101

GSM788009

GPL1261

Mig-6 d/d liver-2

Liver

genotype: Mig-6 d/d gender: Male age: 8 weeks old strain: mixed background

Gene expression data from Mig-6 d/d liver

Sample_geo_accession	GSM788009
Sample_status	Public on Aug 31 2011
Sample_submission_date	Aug 30 2011
Sample_last_update_date	Aug 31 2011
Sample_type	RNA
Sample_channel_count	1
Sample_organism_ch1	Mus musculus
Sample_taxid_ch1	10090
Sample_treatment_protocol_ch1	Eight week old Mig-6f/f and Mig-6d/d male mice were assessed after undergoing a 24 hour fast.
Sample_growth_protocol_ch1	Animals were maintained on a 12-h light/12-h dark cycle (0600 h/1800 h) and fed standard chow diet.
Sample_molecule_ch1	total RNA
Sample_extract_protocol_ch1	Total RNA was isolated using the Trizol reagent (Invitrogen, Carlsbad, CA) manufactures instructions as described.
Sample_label_ch1	biotin
Sample_label_protocol_ch1	Labeling was performed according to the manufactures instructions as described in the eukaryotic section of the GeneChip Expression Analysis Technical Manual (Affymetrix, 2004)
Sample_hyb_protocol	Hybridization was performed according to the manufactures instructions as described in the eukaryotic section of the GeneChip Expression Analysis Technical Manual (Affymetrix, 2004)
Sample_scan_protocol	Scanning was performed according to the manufactures instructions as described in the eukaryotic section of the GeneChip Expression Analysis Technical Manual (Affymetrix, 2004)
Sample_data_processing	All samples were defined using normalized dChIP values. We selected differentially expressed genes within each time exposure using two sample comparisons according to the following criteria lower bound of 90% confidence interval of fold change greater than 1.2 and an absolute value of difference between groups means greater than 50. After excluding expressed sequence tags with no functional annotation, differentially expressed genes were classified according to Gene Ontology function using Affymetrix annotation, literature search in PubMed, and Ingenuity Pathways Analysis (Ingenuity Systems Inc., Redwood City, CA).
Sample_platform_id	GPL1261
Sample_contact_name	TaeHoon,,Kim
Sample_contact_department	Department of Obstetrics, Gynecology & Reproductive Biology
Sample_contact_institute	Michigan State University College of Human Medicine
Sample_contact_address	333 Bostwick Avenue NE
Sample_contact_city	Grand Rapids
Sample_contact_state	Michigan
Sample_contact_zip/postal_code	49503
Sample_contact_country	USA
Sample_supplementary_file	ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM788nnn/GSM788009/suppl/GSM788009.CEL.gz
Sample_series_id	GSE31752
Sample_data_row_count	45101

GSM788010

GPL1261

Mig-6 d/d liver-3

Liver

genotype: Mig-6 d/d gender: Male age: 8 weeks old strain: mixed background

Gene expression data from Mig-6 d/d liver

Sample_geo_accession	GSM788010
Sample_status	Public on Aug 31 2011
Sample_submission_date	Aug 30 2011
Sample_last_update_date	Aug 31 2011
Sample_type	RNA
Sample_channel_count	1
Sample_organism_ch1	Mus musculus
Sample_taxid_ch1	10090
Sample_treatment_protocol_ch1	Eight week old Mig-6f/f and Mig-6d/d male mice were assessed after undergoing a 24 hour fast.
Sample_growth_protocol_ch1	Animals were maintained on a 12-h light/12-h dark cycle (0600 h/1800 h) and fed standard chow diet.
Sample_molecule_ch1	total RNA
Sample_extract_protocol_ch1	Total RNA was isolated using the Trizol reagent (Invitrogen, Carlsbad, CA) manufactures instructions as described.
Sample_label_ch1	biotin
Sample_label_protocol_ch1	Labeling was performed according to the manufactures instructions as described in the eukaryotic section of the GeneChip Expression Analysis Technical Manual (Affymetrix, 2004)
Sample_hyb_protocol	Hybridization was performed according to the manufactures instructions as described in the eukaryotic section of the GeneChip Expression Analysis Technical Manual (Affymetrix, 2004)
Sample_scan_protocol	Scanning was performed according to the manufactures instructions as described in the eukaryotic section of the GeneChip Expression Analysis Technical Manual (Affymetrix, 2004)
Sample_data_processing	All samples were defined using normalized dChIP values. We selected differentially expressed genes within each time exposure using two sample comparisons according to the following criteria lower bound of 90% confidence interval of fold change greater than 1.2 and an absolute value of difference between groups means greater than 50. After excluding expressed sequence tags with no functional annotation, differentially expressed genes were classified according to Gene Ontology function using Affymetrix annotation, literature search in PubMed, and Ingenuity Pathways Analysis (Ingenuity Systems Inc., Redwood City, CA).
Sample_platform_id	GPL1261
Sample_contact_name	TaeHoon,,Kim
Sample_contact_department	Department of Obstetrics, Gynecology & Reproductive Biology
Sample_contact_institute	Michigan State University College of Human Medicine
Sample_contact_address	333 Bostwick Avenue NE
Sample_contact_city	Grand Rapids
Sample_contact_state	Michigan
Sample_contact_zip/postal_code	49503
Sample_contact_country	USA
Sample_supplementary_file	ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM788nnn/GSM788010/suppl/GSM788010.CEL.gz
Sample_series_id	GSE31752
Sample_data_row_count	45101

Make groups for comparisons

(2 groups will be compared at a time)

Select GSMs and click on "Add groups"

Enter the group name here:

Select expression type

Transcripts profile based on;

A. Differential status (Up/Down regulation)

B. Absolute calls (Transcribed/Not-detected)

Filter results by number of probes