Search results for the GEO ID: GSE31973  |
(Click on the check boxes provided under "Select for analysis", to initiate grouping) |
(Once the selection is made, click on "Add groups" in "Make groups for comparison", to make a group. Scroll down) |
|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM791837 | GPL1355 |
|
Liver, control diet administrated for 24d, biological rep1
|
Liver, fed control AIN-93G diet for 12 weeks
|
gender: Male
strain: Wistar
tissue: Liver
age: 8 weeks
diet: control AIN-93G diet for 12 weeks
|
|
| Sample_geo_accession | GSM791837
| | Sample_status | Public on Jan 12 2012
| | Sample_submission_date | Sep 07 2011
| | Sample_last_update_date | Jan 13 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolatedusing Trizol reagent (Invitrogen Life Technologies Corp.), then purified with an RNeasy mini kit (Qiagen K.K., Tokyo, Japan).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | biotinylated aRNA was obtained from 100 ng of purified total RNA using a GeneChip 3’ IVT Express Kit (Affymetrix, Santa Clara, CA, USA).
| | Sample_hyb_protocol | Following fragmentation, 12.5 µg cRNA were hybridized for 16 hr at 45°C on Affymetrix GeneChip Rat Genome 230 2.0 Array. GeneChips were washed and stained in the Affymetrix GeneChip Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | CEL files were quantified with the distribution free weighted (DFW) method, using the statistical language R and Bioconductor.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Yuji,,Nakai
| | Sample_contact_institute | The University of Tokyo
| | Sample_contact_address | 1-1-1, Yayoi
| | Sample_contact_city | Bunkyo-ku
| | Sample_contact_state | Tokyo
| | Sample_contact_zip/postal_code | 113-8657
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM791nnn/GSM791837/suppl/GSM791837.CEL.gz
| | Sample_series_id | GSE31973
| | Sample_data_row_count | 31099
| | |
|
GSM791838 | GPL1355 |
|
Liver, control diet administrated for 24d, biological rep2
|
Liver, fed control AIN-93G diet for 12 weeks
|
gender: Male
strain: Wistar
tissue: Liver
age: 8 weeks
diet: control AIN-93G diet for 12 weeks
|
|
| Sample_geo_accession | GSM791838
| | Sample_status | Public on Jan 12 2012
| | Sample_submission_date | Sep 07 2011
| | Sample_last_update_date | Jan 13 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolatedusing Trizol reagent (Invitrogen Life Technologies Corp.), then purified with an RNeasy mini kit (Qiagen K.K., Tokyo, Japan).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | biotinylated aRNA was obtained from 100 ng of purified total RNA using a GeneChip 3’ IVT Express Kit (Affymetrix, Santa Clara, CA, USA).
| | Sample_hyb_protocol | Following fragmentation, 12.5 µg cRNA were hybridized for 16 hr at 45°C on Affymetrix GeneChip Rat Genome 230 2.0 Array. GeneChips were washed and stained in the Affymetrix GeneChip Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | CEL files were quantified with the distribution free weighted (DFW) method, using the statistical language R and Bioconductor.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Yuji,,Nakai
| | Sample_contact_institute | The University of Tokyo
| | Sample_contact_address | 1-1-1, Yayoi
| | Sample_contact_city | Bunkyo-ku
| | Sample_contact_state | Tokyo
| | Sample_contact_zip/postal_code | 113-8657
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM791nnn/GSM791838/suppl/GSM791838.CEL.gz
| | Sample_series_id | GSE31973
| | Sample_data_row_count | 31099
| | |
|
GSM791839 | GPL1355 |
|
Liver, control diet administrated for 24d, biological rep3
|
Liver, fed control AIN-93G diet for 12 weeks
|
gender: Male
strain: Wistar
tissue: Liver
age: 8 weeks
diet: control AIN-93G diet for 12 weeks
|
|
| Sample_geo_accession | GSM791839
| | Sample_status | Public on Jan 12 2012
| | Sample_submission_date | Sep 07 2011
| | Sample_last_update_date | Jan 13 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolatedusing Trizol reagent (Invitrogen Life Technologies Corp.), then purified with an RNeasy mini kit (Qiagen K.K., Tokyo, Japan).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | biotinylated aRNA was obtained from 100 ng of purified total RNA using a GeneChip 3’ IVT Express Kit (Affymetrix, Santa Clara, CA, USA).
| | Sample_hyb_protocol | Following fragmentation, 12.5 µg cRNA were hybridized for 16 hr at 45°C on Affymetrix GeneChip Rat Genome 230 2.0 Array. GeneChips were washed and stained in the Affymetrix GeneChip Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | CEL files were quantified with the distribution free weighted (DFW) method, using the statistical language R and Bioconductor.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Yuji,,Nakai
| | Sample_contact_institute | The University of Tokyo
| | Sample_contact_address | 1-1-1, Yayoi
| | Sample_contact_city | Bunkyo-ku
| | Sample_contact_state | Tokyo
| | Sample_contact_zip/postal_code | 113-8657
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM791nnn/GSM791839/suppl/GSM791839.CEL.gz
| | Sample_series_id | GSE31973
| | Sample_data_row_count | 31099
| | |
|
GSM791840 | GPL1355 |
|
Liver, control diet administrated for 24d, biological rep4
|
Liver, fed control AIN-93G diet for 12 weeks
|
gender: Male
strain: Wistar
tissue: Liver
age: 8 weeks
diet: control AIN-93G diet for 12 weeks
|
|
| Sample_geo_accession | GSM791840
| | Sample_status | Public on Jan 12 2012
| | Sample_submission_date | Sep 07 2011
| | Sample_last_update_date | Jan 13 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolatedusing Trizol reagent (Invitrogen Life Technologies Corp.), then purified with an RNeasy mini kit (Qiagen K.K., Tokyo, Japan).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | biotinylated aRNA was obtained from 100 ng of purified total RNA using a GeneChip 3’ IVT Express Kit (Affymetrix, Santa Clara, CA, USA).
| | Sample_hyb_protocol | Following fragmentation, 12.5 µg cRNA were hybridized for 16 hr at 45°C on Affymetrix GeneChip Rat Genome 230 2.0 Array. GeneChips were washed and stained in the Affymetrix GeneChip Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | CEL files were quantified with the distribution free weighted (DFW) method, using the statistical language R and Bioconductor.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Yuji,,Nakai
| | Sample_contact_institute | The University of Tokyo
| | Sample_contact_address | 1-1-1, Yayoi
| | Sample_contact_city | Bunkyo-ku
| | Sample_contact_state | Tokyo
| | Sample_contact_zip/postal_code | 113-8657
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM791nnn/GSM791840/suppl/GSM791840.CEL.gz
| | Sample_series_id | GSE31973
| | Sample_data_row_count | 31099
| | |
|
GSM791841 | GPL1355 |
|
Liver, high-phosphorus diet administrated for 24d, biological rep1
|
Liver, fed 1.2% phosphorus containing diet for 24d
|
gender: Male
strain: Wistar
tissue: Liver
age: 8 weeks
diet: 1.2% phosphorus containing diet for 24d
|
|
| Sample_geo_accession | GSM791841
| | Sample_status | Public on Jan 12 2012
| | Sample_submission_date | Sep 07 2011
| | Sample_last_update_date | Jan 13 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolatedusing Trizol reagent (Invitrogen Life Technologies Corp.), then purified with an RNeasy mini kit (Qiagen K.K., Tokyo, Japan).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | biotinylated aRNA was obtained from 100 ng of purified total RNA using a GeneChip 3’ IVT Express Kit (Affymetrix, Santa Clara, CA, USA).
| | Sample_hyb_protocol | Following fragmentation, 12.5 µg cRNA were hybridized for 16 hr at 45°C on Affymetrix GeneChip Rat Genome 230 2.0 Array. GeneChips were washed and stained in the Affymetrix GeneChip Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | CEL files were quantified with the distribution free weighted (DFW) method, using the statistical language R and Bioconductor.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Yuji,,Nakai
| | Sample_contact_institute | The University of Tokyo
| | Sample_contact_address | 1-1-1, Yayoi
| | Sample_contact_city | Bunkyo-ku
| | Sample_contact_state | Tokyo
| | Sample_contact_zip/postal_code | 113-8657
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM791nnn/GSM791841/suppl/GSM791841.CEL.gz
| | Sample_series_id | GSE31973
| | Sample_data_row_count | 31099
| | |
|
GSM791842 | GPL1355 |
|
Liver, high-phosphorus diet administrated for 24d, biological rep2
|
Liver, fed 1.2% phosphorus containing diet for 24d
|
gender: Male
strain: Wistar
tissue: Liver
age: 8 weeks
diet: 1.2% phosphorus containing diet for 24d
|
|
| Sample_geo_accession | GSM791842
| | Sample_status | Public on Jan 12 2012
| | Sample_submission_date | Sep 07 2011
| | Sample_last_update_date | Jan 13 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolatedusing Trizol reagent (Invitrogen Life Technologies Corp.), then purified with an RNeasy mini kit (Qiagen K.K., Tokyo, Japan).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | biotinylated aRNA was obtained from 100 ng of purified total RNA using a GeneChip 3’ IVT Express Kit (Affymetrix, Santa Clara, CA, USA).
| | Sample_hyb_protocol | Following fragmentation, 12.5 µg cRNA were hybridized for 16 hr at 45°C on Affymetrix GeneChip Rat Genome 230 2.0 Array. GeneChips were washed and stained in the Affymetrix GeneChip Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | CEL files were quantified with the distribution free weighted (DFW) method, using the statistical language R and Bioconductor.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Yuji,,Nakai
| | Sample_contact_institute | The University of Tokyo
| | Sample_contact_address | 1-1-1, Yayoi
| | Sample_contact_city | Bunkyo-ku
| | Sample_contact_state | Tokyo
| | Sample_contact_zip/postal_code | 113-8657
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM791nnn/GSM791842/suppl/GSM791842.CEL.gz
| | Sample_series_id | GSE31973
| | Sample_data_row_count | 31099
| | |
|
GSM791843 | GPL1355 |
|
Liver, high-phosphorus diet administrated for 24d, biological rep3
|
Liver, fed 1.2% phosphorus containing diet for 24d
|
gender: Male
strain: Wistar
tissue: Liver
age: 8 weeks
diet: 1.2% phosphorus containing diet for 24d
|
|
| Sample_geo_accession | GSM791843
| | Sample_status | Public on Jan 12 2012
| | Sample_submission_date | Sep 07 2011
| | Sample_last_update_date | Jan 13 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolatedusing Trizol reagent (Invitrogen Life Technologies Corp.), then purified with an RNeasy mini kit (Qiagen K.K., Tokyo, Japan).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | biotinylated aRNA was obtained from 100 ng of purified total RNA using a GeneChip 3’ IVT Express Kit (Affymetrix, Santa Clara, CA, USA).
| | Sample_hyb_protocol | Following fragmentation, 12.5 µg cRNA were hybridized for 16 hr at 45°C on Affymetrix GeneChip Rat Genome 230 2.0 Array. GeneChips were washed and stained in the Affymetrix GeneChip Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | CEL files were quantified with the distribution free weighted (DFW) method, using the statistical language R and Bioconductor.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Yuji,,Nakai
| | Sample_contact_institute | The University of Tokyo
| | Sample_contact_address | 1-1-1, Yayoi
| | Sample_contact_city | Bunkyo-ku
| | Sample_contact_state | Tokyo
| | Sample_contact_zip/postal_code | 113-8657
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM791nnn/GSM791843/suppl/GSM791843.CEL.gz
| | Sample_series_id | GSE31973
| | Sample_data_row_count | 31099
| | |
|
GSM791844 | GPL1355 |
|
Liver, high-phosphorus diet administrated for 24d, biological rep4
|
Liver, fed 1.2% phosphorus containing diet for 24d
|
gender: Male
strain: Wistar
tissue: Liver
age: 8 weeks
diet: 1.2% phosphorus containing diet for 24d
|
|
| Sample_geo_accession | GSM791844
| | Sample_status | Public on Jan 12 2012
| | Sample_submission_date | Sep 07 2011
| | Sample_last_update_date | Jan 13 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolatedusing Trizol reagent (Invitrogen Life Technologies Corp.), then purified with an RNeasy mini kit (Qiagen K.K., Tokyo, Japan).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | biotinylated aRNA was obtained from 100 ng of purified total RNA using a GeneChip 3’ IVT Express Kit (Affymetrix, Santa Clara, CA, USA).
| | Sample_hyb_protocol | Following fragmentation, 12.5 µg cRNA were hybridized for 16 hr at 45°C on Affymetrix GeneChip Rat Genome 230 2.0 Array. GeneChips were washed and stained in the Affymetrix GeneChip Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | CEL files were quantified with the distribution free weighted (DFW) method, using the statistical language R and Bioconductor.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Yuji,,Nakai
| | Sample_contact_institute | The University of Tokyo
| | Sample_contact_address | 1-1-1, Yayoi
| | Sample_contact_city | Bunkyo-ku
| | Sample_contact_state | Tokyo
| | Sample_contact_zip/postal_code | 113-8657
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM791nnn/GSM791844/suppl/GSM791844.CEL.gz
| | Sample_series_id | GSE31973
| | Sample_data_row_count | 31099
| | |
|
| |
| |
Make groups for comparisons |
(2 groups will be compared at a time) |
|
| Select GSMs and click on "Add groups" |
Enter the group name here: |
|
|
|
