Search results for the GEO ID: GSE32093  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM795584 | GPL1261 |
|
E12.5 wild-type embryonic kidney, biological rep1
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mouse E12.5 embryonic kidney isolated from wild-type pregnant female
|
strain: C57BL/6
genotype/variation: Wildtype
tissue: whole embryonic kidney
age: gestational day 12.5 (E12.5)
|
Gene expression data from E12.5 whole embryonic kidney
|
| Sample_geo_accession | GSM795584
| | Sample_status | Public on Apr 01 2012
| | Sample_submission_date | Sep 13 2011
| | Sample_last_update_date | Apr 01 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Whole embryonic kidneys were isolated from E12.5 pregant female wild-type and knockout mice.
| | Sample_growth_protocol_ch1 | NA (tissue isolated and RNA extracted directly)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was extracted with the Qiagen RNEasy Micro kit according to the manufacturer's instructions.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2-5 ug total RNA (Expression Analysis Technical Manual, 2011, Affymetrix)
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hrs at 45C on GeneChip Mouse Genome Array (430 2.0). GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Sanjay,K.,Nigam
| | Sample_contact_email | nigamlab@ucsd.edu
| | Sample_contact_phone | 858-822-3482
| | Sample_contact_fax | 858-822-3483
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | University of California San Diego
| | Sample_contact_address | 9500 Gilman Drive
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093-0693
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM795nnn/GSM795584/suppl/GSM795584_Wildtype_1.CEL.gz
| | Sample_series_id | GSE32093
| | Sample_data_row_count | 45101
| | |
|
GSM795585 | GPL1261 |
|
E12.5 wild-type embryonic kidney, biological rep2
|
mouse E12.5 embryonic kidney isolated from wild-type pregnant female
|
strain: C57BL/6
genotype/variation: Wildtype
tissue: whole embryonic kidney
age: gestational day 12.5 (E12.5)
|
Gene expression data from E12.5 whole embryonic kidney
|
| Sample_geo_accession | GSM795585
| | Sample_status | Public on Apr 01 2012
| | Sample_submission_date | Sep 13 2011
| | Sample_last_update_date | Apr 01 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Whole embryonic kidneys were isolated from E12.5 pregant female wild-type and knockout mice.
| | Sample_growth_protocol_ch1 | NA (tissue isolated and RNA extracted directly)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was extracted with the Qiagen RNEasy Micro kit according to the manufacturer's instructions.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2-5 ug total RNA (Expression Analysis Technical Manual, 2011, Affymetrix)
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hrs at 45C on GeneChip Mouse Genome Array (430 2.0). GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Sanjay,K.,Nigam
| | Sample_contact_email | nigamlab@ucsd.edu
| | Sample_contact_phone | 858-822-3482
| | Sample_contact_fax | 858-822-3483
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | University of California San Diego
| | Sample_contact_address | 9500 Gilman Drive
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093-0693
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM795nnn/GSM795585/suppl/GSM795585_Wildtype_2.CEL.gz
| | Sample_series_id | GSE32093
| | Sample_data_row_count | 45101
| | |
|
GSM795586 | GPL1261 |
|
E12.5 wild-type embryonic kidney, biological rep3
|
mouse E12.5 embryonic kidney isolated from wild-type pregnant female
|
strain: C57BL/6
genotype/variation: Wildtype
tissue: whole embryonic kidney
age: gestational day 12.5 (E12.5)
|
Gene expression data from E12.5 whole embryonic kidney
|
| Sample_geo_accession | GSM795586
| | Sample_status | Public on Apr 01 2012
| | Sample_submission_date | Sep 13 2011
| | Sample_last_update_date | Apr 01 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Whole embryonic kidneys were isolated from E12.5 pregant female wild-type and knockout mice.
| | Sample_growth_protocol_ch1 | NA (tissue isolated and RNA extracted directly)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was extracted with the Qiagen RNEasy Micro kit according to the manufacturer's instructions.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2-5 ug total RNA (Expression Analysis Technical Manual, 2011, Affymetrix)
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hrs at 45C on GeneChip Mouse Genome Array (430 2.0). GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Sanjay,K.,Nigam
| | Sample_contact_email | nigamlab@ucsd.edu
| | Sample_contact_phone | 858-822-3482
| | Sample_contact_fax | 858-822-3483
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | University of California San Diego
| | Sample_contact_address | 9500 Gilman Drive
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093-0693
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM795nnn/GSM795586/suppl/GSM795586_Wildtype_3.CEL.gz
| | Sample_series_id | GSE32093
| | Sample_data_row_count | 45101
| | |
|
GSM795587 | GPL1261 |
|
E12.5 Ret-deficient embryonic kidney, biological rep1
|
mouse E12.5 embryonic kidney isolated from Ret-knockout pregnant female
|
strain: C57BL/6
genotype/variation: Ret Deficient
tissue: whole embryonic kidney
age: gestational day 12.5 (E12.5)
|
Gene expression data from E12.5 whole embryonic kidney
|
| Sample_geo_accession | GSM795587
| | Sample_status | Public on Apr 01 2012
| | Sample_submission_date | Sep 13 2011
| | Sample_last_update_date | Apr 01 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Whole embryonic kidneys were isolated from E12.5 pregant female wild-type and knockout mice.
| | Sample_growth_protocol_ch1 | NA (tissue isolated and RNA extracted directly)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was extracted with the Qiagen RNEasy Micro kit according to the manufacturer's instructions.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2-5 ug total RNA (Expression Analysis Technical Manual, 2011, Affymetrix)
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hrs at 45C on GeneChip Mouse Genome Array (430 2.0). GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Sanjay,K.,Nigam
| | Sample_contact_email | nigamlab@ucsd.edu
| | Sample_contact_phone | 858-822-3482
| | Sample_contact_fax | 858-822-3483
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | University of California San Diego
| | Sample_contact_address | 9500 Gilman Drive
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093-0693
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM795nnn/GSM795587/suppl/GSM795587_RetKO_1.CEL.gz
| | Sample_series_id | GSE32093
| | Sample_data_row_count | 45101
| | |
|
GSM795588 | GPL1261 |
|
E12.5 Ret-deficient embryonic kidney, biological rep2
|
mouse E12.5 embryonic kidney isolated from Ret-knockout pregnant female
|
strain: C57BL/6
genotype/variation: Ret Deficient
tissue: whole embryonic kidney
age: gestational day 12.5 (E12.5)
|
Gene expression data from E12.5 whole embryonic kidney
|
| Sample_geo_accession | GSM795588
| | Sample_status | Public on Apr 01 2012
| | Sample_submission_date | Sep 13 2011
| | Sample_last_update_date | Apr 01 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Whole embryonic kidneys were isolated from E12.5 pregant female wild-type and knockout mice.
| | Sample_growth_protocol_ch1 | NA (tissue isolated and RNA extracted directly)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was extracted with the Qiagen RNEasy Micro kit according to the manufacturer's instructions.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2-5 ug total RNA (Expression Analysis Technical Manual, 2011, Affymetrix)
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hrs at 45C on GeneChip Mouse Genome Array (430 2.0). GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Sanjay,K.,Nigam
| | Sample_contact_email | nigamlab@ucsd.edu
| | Sample_contact_phone | 858-822-3482
| | Sample_contact_fax | 858-822-3483
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | University of California San Diego
| | Sample_contact_address | 9500 Gilman Drive
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093-0693
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM795nnn/GSM795588/suppl/GSM795588_RetKO_2.CEL.gz
| | Sample_series_id | GSE32093
| | Sample_data_row_count | 45101
| | |
|
GSM795589 | GPL1261 |
|
E12.5 Ret-deficient embryonic kidney, biological rep3
|
mouse E12.5 embryonic kidney isolated from Ret-knockout pregnant female
|
strain: C57BL/6
genotype/variation: Ret Deficient
tissue: whole embryonic kidney
age: gestational day 12.5 (E12.5)
|
Gene expression data from E12.5 whole embryonic kidney
|
| Sample_geo_accession | GSM795589
| | Sample_status | Public on Apr 01 2012
| | Sample_submission_date | Sep 13 2011
| | Sample_last_update_date | Apr 01 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Whole embryonic kidneys were isolated from E12.5 pregant female wild-type and knockout mice.
| | Sample_growth_protocol_ch1 | NA (tissue isolated and RNA extracted directly)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was extracted with the Qiagen RNEasy Micro kit according to the manufacturer's instructions.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2-5 ug total RNA (Expression Analysis Technical Manual, 2011, Affymetrix)
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hrs at 45C on GeneChip Mouse Genome Array (430 2.0). GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Sanjay,K.,Nigam
| | Sample_contact_email | nigamlab@ucsd.edu
| | Sample_contact_phone | 858-822-3482
| | Sample_contact_fax | 858-822-3483
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | University of California San Diego
| | Sample_contact_address | 9500 Gilman Drive
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093-0693
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM795nnn/GSM795589/suppl/GSM795589_RetKO_3.CEL.gz
| | Sample_series_id | GSE32093
| | Sample_data_row_count | 45101
| | |
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