Search results for the GEO ID: GSE32100 |
(Click on the check boxes provided under "Select for analysis", to initiate grouping) |
(Once the selection is made, click on "Add groups" in "Make groups for comparison", to make a group. Scroll down) |
|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM795820 | GPL570 |
|
U87 at 20% O2, biological rep1
|
U87 (glioblastoma) cultivated at 20% of oxygen
|
tissue: brain
cell type: ATCC-HB14
cell line: U87
oxygen level: 20%
|
cell culture in hyperoxic conditions
|
Sample_geo_accession | GSM795820
| Sample_status | Public on Apr 05 2013
| Sample_submission_date | Sep 13 2011
| Sample_last_update_date | Apr 06 2013
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_growth_protocol_ch1 | Cells were cultured either in the presence of serum or in serum-free medium at different concentration of O2 (20%, 3% or 0.3%) in an hypoxic workstation
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA were extracted from cells with the MirVana isolation kit.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 200ng total RNA (Expression Analysis Technical Manual, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133plus2 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the GeneChip® Scanner 3000.
| Sample_data_processing | The data were analyzed with Expression console Suite (RMA) using Affymetrix default analysis settings and global scaling as normalization method.
| Sample_platform_id | GPL570
| Sample_contact_name | didier,,wion
| Sample_contact_email | didier.wion@ujf-grenoble.fr
| Sample_contact_laboratory | Team7
| Sample_contact_department | U836
| Sample_contact_institute | INSERM
| Sample_contact_address | fortuné ferrini
| Sample_contact_city | La tronche
| Sample_contact_zip/postal_code | 38700
| Sample_contact_country | France
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM795nnn/GSM795820/suppl/GSM795820.CEL.gz
| Sample_series_id | GSE32100
| Sample_data_row_count | 54675
| |
|
GSM795821 | GPL570 |
|
U87 at 20% O2, biological rep2
|
U87 (glioblastoma) cultivated at 20% of oxygen
|
tissue: brain
cell type: ATCC-HB14
cell line: U87
oxygen level: 20%
|
cell culture in hyperoxic conditions
|
Sample_geo_accession | GSM795821
| Sample_status | Public on Apr 05 2013
| Sample_submission_date | Sep 13 2011
| Sample_last_update_date | Apr 06 2013
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_growth_protocol_ch1 | Cells were cultured either in the presence of serum or in serum-free medium at different concentration of O2 (20%, 3% or 0.3%) in an hypoxic workstation
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA were extracted from cells with the MirVana isolation kit.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 200ng total RNA (Expression Analysis Technical Manual, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133plus2 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the GeneChip® Scanner 3000.
| Sample_data_processing | The data were analyzed with Expression console Suite (RMA) using Affymetrix default analysis settings and global scaling as normalization method.
| Sample_platform_id | GPL570
| Sample_contact_name | didier,,wion
| Sample_contact_email | didier.wion@ujf-grenoble.fr
| Sample_contact_laboratory | Team7
| Sample_contact_department | U836
| Sample_contact_institute | INSERM
| Sample_contact_address | fortuné ferrini
| Sample_contact_city | La tronche
| Sample_contact_zip/postal_code | 38700
| Sample_contact_country | France
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM795nnn/GSM795821/suppl/GSM795821.CEL.gz
| Sample_series_id | GSE32100
| Sample_data_row_count | 54675
| |
|
GSM795822 | GPL570 |
|
U87 at 20% O2, biological rep3
|
U87 (glioblastoma) cultivated at 20% of oxygen
|
tissue: brain
cell type: ATCC-HB14
cell line: U87
oxygen level: 20%
|
cell culture in hyperoxic conditions
|
Sample_geo_accession | GSM795822
| Sample_status | Public on Apr 05 2013
| Sample_submission_date | Sep 13 2011
| Sample_last_update_date | Apr 06 2013
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_growth_protocol_ch1 | Cells were cultured either in the presence of serum or in serum-free medium at different concentration of O2 (20%, 3% or 0.3%) in an hypoxic workstation
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA were extracted from cells with the MirVana isolation kit.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 200ng total RNA (Expression Analysis Technical Manual, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133plus2 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the GeneChip® Scanner 3000.
| Sample_data_processing | The data were analyzed with Expression console Suite (RMA) using Affymetrix default analysis settings and global scaling as normalization method.
| Sample_platform_id | GPL570
| Sample_contact_name | didier,,wion
| Sample_contact_email | didier.wion@ujf-grenoble.fr
| Sample_contact_laboratory | Team7
| Sample_contact_department | U836
| Sample_contact_institute | INSERM
| Sample_contact_address | fortuné ferrini
| Sample_contact_city | La tronche
| Sample_contact_zip/postal_code | 38700
| Sample_contact_country | France
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM795nnn/GSM795822/suppl/GSM795822.CEL.gz
| Sample_series_id | GSE32100
| Sample_data_row_count | 54675
| |
|
GSM795824 | GPL570 |
|
U87 at 0.3% O2, biological rep1
|
U87 (glioblastoma) cultivated at 0.3% of oxygen
|
tissue: brain
cell type: ATCC-HB14
cell line: U87
oxygen level: 0.3%
|
cell culture in hypoxic conditions
|
Sample_geo_accession | GSM795824
| Sample_status | Public on Apr 05 2013
| Sample_submission_date | Sep 13 2011
| Sample_last_update_date | Apr 06 2013
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_growth_protocol_ch1 | Cells were cultured either in the presence of serum or in serum-free medium at different concentration of O2 (20%, 3% or 0.3%) in an hypoxic workstation
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA were extracted from cells with the MirVana isolation kit.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 200ng total RNA (Expression Analysis Technical Manual, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133plus2 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the GeneChip® Scanner 3000.
| Sample_data_processing | The data were analyzed with Expression console Suite (RMA) using Affymetrix default analysis settings and global scaling as normalization method.
| Sample_platform_id | GPL570
| Sample_contact_name | didier,,wion
| Sample_contact_email | didier.wion@ujf-grenoble.fr
| Sample_contact_laboratory | Team7
| Sample_contact_department | U836
| Sample_contact_institute | INSERM
| Sample_contact_address | fortuné ferrini
| Sample_contact_city | La tronche
| Sample_contact_zip/postal_code | 38700
| Sample_contact_country | France
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM795nnn/GSM795824/suppl/GSM795824.CEL.gz
| Sample_series_id | GSE32100
| Sample_data_row_count | 54675
| |
|
GSM795825 | GPL570 |
|
U87 at 0.3% O2, biological rep2
|
U87 (glioblastoma) cultivated at 0.3% of oxygen
|
tissue: brain
cell type: ATCC-HB14
cell line: U87
oxygen level: 0.3%
|
cell culture in hypoxic conditions
|
Sample_geo_accession | GSM795825
| Sample_status | Public on Apr 05 2013
| Sample_submission_date | Sep 13 2011
| Sample_last_update_date | Apr 06 2013
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_growth_protocol_ch1 | Cells were cultured either in the presence of serum or in serum-free medium at different concentration of O2 (20%, 3% or 0.3%) in an hypoxic workstation
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA were extracted from cells with the MirVana isolation kit.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 200ng total RNA (Expression Analysis Technical Manual, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133plus2 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the GeneChip® Scanner 3000.
| Sample_data_processing | The data were analyzed with Expression console Suite (RMA) using Affymetrix default analysis settings and global scaling as normalization method.
| Sample_platform_id | GPL570
| Sample_contact_name | didier,,wion
| Sample_contact_email | didier.wion@ujf-grenoble.fr
| Sample_contact_laboratory | Team7
| Sample_contact_department | U836
| Sample_contact_institute | INSERM
| Sample_contact_address | fortuné ferrini
| Sample_contact_city | La tronche
| Sample_contact_zip/postal_code | 38700
| Sample_contact_country | France
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM795nnn/GSM795825/suppl/GSM795825.CEL.gz
| Sample_series_id | GSE32100
| Sample_data_row_count | 54675
| |
|
GSM795827 | GPL570 |
|
U87 at 0.3% O2, biological rep3
|
U87 (glioblastoma) cultivated at 0.3% of oxygen
|
tissue: brain
cell type: ATCC-HB14
cell line: U87
oxygen level: 0.3%
|
cell culture in hypoxic conditions
|
Sample_geo_accession | GSM795827
| Sample_status | Public on Apr 05 2013
| Sample_submission_date | Sep 13 2011
| Sample_last_update_date | Apr 06 2013
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_growth_protocol_ch1 | Cells were cultured either in the presence of serum or in serum-free medium at different concentration of O2 (20%, 3% or 0.3%) in an hypoxic workstation
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA were extracted from cells with the MirVana isolation kit.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 200ng total RNA (Expression Analysis Technical Manual, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133plus2 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the GeneChip® Scanner 3000.
| Sample_data_processing | The data were analyzed with Expression console Suite (RMA) using Affymetrix default analysis settings and global scaling as normalization method.
| Sample_platform_id | GPL570
| Sample_contact_name | didier,,wion
| Sample_contact_email | didier.wion@ujf-grenoble.fr
| Sample_contact_laboratory | Team7
| Sample_contact_department | U836
| Sample_contact_institute | INSERM
| Sample_contact_address | fortuné ferrini
| Sample_contact_city | La tronche
| Sample_contact_zip/postal_code | 38700
| Sample_contact_country | France
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM795nnn/GSM795827/suppl/GSM795827.CEL.gz
| Sample_series_id | GSE32100
| Sample_data_row_count | 54675
| |
|
GSM795828 | GPL570 |
|
Glio6 serum-free at 3% O2, biological rep1
|
Glioblastoma primary serum-free culture cultivated at 3% of oxygen
|
tissue: brain
cell type: primary culture
cell line: Glio6
oxygen level: 3%
serum: no
|
cell culture in normoxic conditions
|
Sample_geo_accession | GSM795828
| Sample_status | Public on Apr 05 2013
| Sample_submission_date | Sep 13 2011
| Sample_last_update_date | Apr 06 2013
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_growth_protocol_ch1 | Cells were cultured either in the presence of serum or in serum-free medium at different concentration of O2 (20%, 3% or 0.3%) in an hypoxic workstation
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA were extracted from cells with the MirVana isolation kit.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 200ng total RNA (Expression Analysis Technical Manual, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133plus2 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the GeneChip® Scanner 3000.
| Sample_data_processing | The data were analyzed with Expression console Suite (RMA) using Affymetrix default analysis settings and global scaling as normalization method.
| Sample_platform_id | GPL570
| Sample_contact_name | didier,,wion
| Sample_contact_email | didier.wion@ujf-grenoble.fr
| Sample_contact_laboratory | Team7
| Sample_contact_department | U836
| Sample_contact_institute | INSERM
| Sample_contact_address | fortuné ferrini
| Sample_contact_city | La tronche
| Sample_contact_zip/postal_code | 38700
| Sample_contact_country | France
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM795nnn/GSM795828/suppl/GSM795828.CEL.gz
| Sample_series_id | GSE32100
| Sample_data_row_count | 54675
| |
|
GSM795829 | GPL570 |
|
Glio6 serum-free at 3% O2, biological rep2
|
Glioblastoma primary serum-free culture cultivated at 3% of oxygen
|
tissue: brain
cell type: primary culture
cell line: Glio6
oxygen level: 3%
serum: no
|
cell culture in normoxic conditions
|
Sample_geo_accession | GSM795829
| Sample_status | Public on Apr 05 2013
| Sample_submission_date | Sep 13 2011
| Sample_last_update_date | Apr 06 2013
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_growth_protocol_ch1 | Cells were cultured either in the presence of serum or in serum-free medium at different concentration of O2 (20%, 3% or 0.3%) in an hypoxic workstation
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA were extracted from cells with the MirVana isolation kit.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 200ng total RNA (Expression Analysis Technical Manual, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133plus2 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the GeneChip® Scanner 3000.
| Sample_data_processing | The data were analyzed with Expression console Suite (RMA) using Affymetrix default analysis settings and global scaling as normalization method.
| Sample_platform_id | GPL570
| Sample_contact_name | didier,,wion
| Sample_contact_email | didier.wion@ujf-grenoble.fr
| Sample_contact_laboratory | Team7
| Sample_contact_department | U836
| Sample_contact_institute | INSERM
| Sample_contact_address | fortuné ferrini
| Sample_contact_city | La tronche
| Sample_contact_zip/postal_code | 38700
| Sample_contact_country | France
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM795nnn/GSM795829/suppl/GSM795829.CEL.gz
| Sample_series_id | GSE32100
| Sample_data_row_count | 54675
| |
|
GSM795831 | GPL570 |
|
Glio6 serum-free at 3% O2, biological rep4
|
Glioblastoma primary serum-free culture cultivated at 3% of oxygen
|
tissue: brain
cell type: primary culture
cell line: Glio6
oxygen level: 3%
serum: no
|
cell culture in normoxic conditions
|
Sample_geo_accession | GSM795831
| Sample_status | Public on Apr 05 2013
| Sample_submission_date | Sep 13 2011
| Sample_last_update_date | Apr 06 2013
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_growth_protocol_ch1 | Cells were cultured either in the presence of serum or in serum-free medium at different concentration of O2 (20%, 3% or 0.3%) in an hypoxic workstation
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA were extracted from cells with the MirVana isolation kit.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 200ng total RNA (Expression Analysis Technical Manual, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133plus2 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the GeneChip® Scanner 3000.
| Sample_data_processing | The data were analyzed with Expression console Suite (RMA) using Affymetrix default analysis settings and global scaling as normalization method.
| Sample_platform_id | GPL570
| Sample_contact_name | didier,,wion
| Sample_contact_email | didier.wion@ujf-grenoble.fr
| Sample_contact_laboratory | Team7
| Sample_contact_department | U836
| Sample_contact_institute | INSERM
| Sample_contact_address | fortuné ferrini
| Sample_contact_city | La tronche
| Sample_contact_zip/postal_code | 38700
| Sample_contact_country | France
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM795nnn/GSM795831/suppl/GSM795831.CEL.gz
| Sample_series_id | GSE32100
| Sample_data_row_count | 54675
| |
|
GSM795832 | GPL570 |
|
Glio6 serum-free at 3% O2, biological rep5
|
Glioblastoma primary serum-free culture cultivated at 3% of oxygen
|
tissue: brain
cell type: primary culture
cell line: Glio6
oxygen level: 3%
serum: no
|
cell culture in normoxic conditions
|
Sample_geo_accession | GSM795832
| Sample_status | Public on Apr 05 2013
| Sample_submission_date | Sep 13 2011
| Sample_last_update_date | Apr 06 2013
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_growth_protocol_ch1 | Cells were cultured either in the presence of serum or in serum-free medium at different concentration of O2 (20%, 3% or 0.3%) in an hypoxic workstation
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA were extracted from cells with the MirVana isolation kit.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 200ng total RNA (Expression Analysis Technical Manual, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133plus2 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the GeneChip® Scanner 3000.
| Sample_data_processing | The data were analyzed with Expression console Suite (RMA) using Affymetrix default analysis settings and global scaling as normalization method.
| Sample_platform_id | GPL570
| Sample_contact_name | didier,,wion
| Sample_contact_email | didier.wion@ujf-grenoble.fr
| Sample_contact_laboratory | Team7
| Sample_contact_department | U836
| Sample_contact_institute | INSERM
| Sample_contact_address | fortuné ferrini
| Sample_contact_city | La tronche
| Sample_contact_zip/postal_code | 38700
| Sample_contact_country | France
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM795nnn/GSM795832/suppl/GSM795832.CEL.gz
| Sample_series_id | GSE32100
| Sample_data_row_count | 54675
| |
|
GSM795834 | GPL570 |
|
Glio6 serum-free at 0.3% O2, biological rep1
|
Glioblastoma primary serum-free culture cultivated at 0.3% of oxygen
|
tissue: brain
cell type: primary culture
cell line: Glio6
oxygen level: 0.3%
serum: no
|
cell culture in hypoxic conditions
|
Sample_geo_accession | GSM795834
| Sample_status | Public on Apr 05 2013
| Sample_submission_date | Sep 13 2011
| Sample_last_update_date | Apr 06 2013
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_growth_protocol_ch1 | Cells were cultured either in the presence of serum or in serum-free medium at different concentration of O2 (20%, 3% or 0.3%) in an hypoxic workstation
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA were extracted from cells with the MirVana isolation kit.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 200ng total RNA (Expression Analysis Technical Manual, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133plus2 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the GeneChip® Scanner 3000.
| Sample_data_processing | The data were analyzed with Expression console Suite (RMA) using Affymetrix default analysis settings and global scaling as normalization method.
| Sample_platform_id | GPL570
| Sample_contact_name | didier,,wion
| Sample_contact_email | didier.wion@ujf-grenoble.fr
| Sample_contact_laboratory | Team7
| Sample_contact_department | U836
| Sample_contact_institute | INSERM
| Sample_contact_address | fortuné ferrini
| Sample_contact_city | La tronche
| Sample_contact_zip/postal_code | 38700
| Sample_contact_country | France
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM795nnn/GSM795834/suppl/GSM795834.CEL.gz
| Sample_series_id | GSE32100
| Sample_data_row_count | 54675
| |
|
GSM795835 | GPL570 |
|
Glio6 serum-free at 0.3% O2, biological rep2
|
Glioblastoma primary serum-free culture cultivated at 0.3% of oxygen
|
tissue: brain
cell type: primary culture
cell line: Glio6
oxygen level: 0.3%
serum: no
|
cell culture in hypoxic conditions
|
Sample_geo_accession | GSM795835
| Sample_status | Public on Apr 05 2013
| Sample_submission_date | Sep 13 2011
| Sample_last_update_date | Apr 06 2013
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_growth_protocol_ch1 | Cells were cultured either in the presence of serum or in serum-free medium at different concentration of O2 (20%, 3% or 0.3%) in an hypoxic workstation
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA were extracted from cells with the MirVana isolation kit.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 200ng total RNA (Expression Analysis Technical Manual, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133plus2 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the GeneChip® Scanner 3000.
| Sample_data_processing | The data were analyzed with Expression console Suite (RMA) using Affymetrix default analysis settings and global scaling as normalization method.
| Sample_platform_id | GPL570
| Sample_contact_name | didier,,wion
| Sample_contact_email | didier.wion@ujf-grenoble.fr
| Sample_contact_laboratory | Team7
| Sample_contact_department | U836
| Sample_contact_institute | INSERM
| Sample_contact_address | fortuné ferrini
| Sample_contact_city | La tronche
| Sample_contact_zip/postal_code | 38700
| Sample_contact_country | France
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM795nnn/GSM795835/suppl/GSM795835.CEL.gz
| Sample_series_id | GSE32100
| Sample_data_row_count | 54675
| |
|
GSM795837 | GPL570 |
|
Glio6 serum-free at 0.3% O2, biological rep3
|
Glioblastoma primary serum-free culture cultivated at 0.3% of oxygen
|
tissue: brain
cell type: primary culture
cell line: Glio6
oxygen level: 0.3%
serum: no
|
cell culture in hypoxic conditions
|
Sample_geo_accession | GSM795837
| Sample_status | Public on Apr 05 2013
| Sample_submission_date | Sep 13 2011
| Sample_last_update_date | Apr 06 2013
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_growth_protocol_ch1 | Cells were cultured either in the presence of serum or in serum-free medium at different concentration of O2 (20%, 3% or 0.3%) in an hypoxic workstation
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA were extracted from cells with the MirVana isolation kit.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 200ng total RNA (Expression Analysis Technical Manual, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133plus2 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the GeneChip® Scanner 3000.
| Sample_data_processing | The data were analyzed with Expression console Suite (RMA) using Affymetrix default analysis settings and global scaling as normalization method.
| Sample_platform_id | GPL570
| Sample_contact_name | didier,,wion
| Sample_contact_email | didier.wion@ujf-grenoble.fr
| Sample_contact_laboratory | Team7
| Sample_contact_department | U836
| Sample_contact_institute | INSERM
| Sample_contact_address | fortuné ferrini
| Sample_contact_city | La tronche
| Sample_contact_zip/postal_code | 38700
| Sample_contact_country | France
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM795nnn/GSM795837/suppl/GSM795837.CEL.gz
| Sample_series_id | GSE32100
| Sample_data_row_count | 54675
| |
|
GSM795838 | GPL570 |
|
Glio6 serum-free at 0.3% O2, biological rep4
|
Glioblastoma primary serum-free culture cultivated at 0.3% of oxygen
|
tissue: brain
cell type: primary culture
cell line: Glio6
oxygen level: 0.3%
serum: no
|
cell culture in hypoxic conditions
|
Sample_geo_accession | GSM795838
| Sample_status | Public on Apr 05 2013
| Sample_submission_date | Sep 13 2011
| Sample_last_update_date | Apr 06 2013
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_growth_protocol_ch1 | Cells were cultured either in the presence of serum or in serum-free medium at different concentration of O2 (20%, 3% or 0.3%) in an hypoxic workstation
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA were extracted from cells with the MirVana isolation kit.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 200ng total RNA (Expression Analysis Technical Manual, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133plus2 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the GeneChip® Scanner 3000.
| Sample_data_processing | The data were analyzed with Expression console Suite (RMA) using Affymetrix default analysis settings and global scaling as normalization method.
| Sample_platform_id | GPL570
| Sample_contact_name | didier,,wion
| Sample_contact_email | didier.wion@ujf-grenoble.fr
| Sample_contact_laboratory | Team7
| Sample_contact_department | U836
| Sample_contact_institute | INSERM
| Sample_contact_address | fortuné ferrini
| Sample_contact_city | La tronche
| Sample_contact_zip/postal_code | 38700
| Sample_contact_country | France
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM795nnn/GSM795838/suppl/GSM795838.CEL.gz
| Sample_series_id | GSE32100
| Sample_data_row_count | 54675
| |
|
GSM795839 | GPL570 |
|
Glio6 serum-free at 0.3% O2, biological rep5
|
Glioblastoma primary serum-free culture cultivated at 0.3% of oxygen
|
tissue: brain
cell type: primary culture
cell line: Glio6
oxygen level: 0.3%
serum: no
|
cell culture in hypoxic conditions
|
Sample_geo_accession | GSM795839
| Sample_status | Public on Apr 05 2013
| Sample_submission_date | Sep 13 2011
| Sample_last_update_date | Apr 06 2013
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_growth_protocol_ch1 | Cells were cultured either in the presence of serum or in serum-free medium at different concentration of O2 (20%, 3% or 0.3%) in an hypoxic workstation
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA were extracted from cells with the MirVana isolation kit.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 200ng total RNA (Expression Analysis Technical Manual, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133plus2 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the GeneChip® Scanner 3000.
| Sample_data_processing | The data were analyzed with Expression console Suite (RMA) using Affymetrix default analysis settings and global scaling as normalization method.
| Sample_platform_id | GPL570
| Sample_contact_name | didier,,wion
| Sample_contact_email | didier.wion@ujf-grenoble.fr
| Sample_contact_laboratory | Team7
| Sample_contact_department | U836
| Sample_contact_institute | INSERM
| Sample_contact_address | fortuné ferrini
| Sample_contact_city | La tronche
| Sample_contact_zip/postal_code | 38700
| Sample_contact_country | France
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM795nnn/GSM795839/suppl/GSM795839.CEL.gz
| Sample_series_id | GSE32100
| Sample_data_row_count | 54675
| |
|
GSM795841 | GPL570 |
|
Glio6 at 3% O2 with serum, biological rep1
|
Glioblastoma primary culture (with serum) cultivated at 3% of oxygen
|
tissue: brain
cell type: primary culture
cell line: Glio6
oxygen level: 3%
serum: yes
|
cell culture in normoxic conditions
|
Sample_geo_accession | GSM795841
| Sample_status | Public on Apr 05 2013
| Sample_submission_date | Sep 13 2011
| Sample_last_update_date | Apr 06 2013
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_growth_protocol_ch1 | Cells were cultured either in the presence of serum or in serum-free medium at different concentration of O2 (20%, 3% or 0.3%) in an hypoxic workstation
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA were extracted from cells with the MirVana isolation kit.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 200ng total RNA (Expression Analysis Technical Manual, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133plus2 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the GeneChip® Scanner 3000.
| Sample_data_processing | The data were analyzed with Expression console Suite (RMA) using Affymetrix default analysis settings and global scaling as normalization method.
| Sample_platform_id | GPL570
| Sample_contact_name | didier,,wion
| Sample_contact_email | didier.wion@ujf-grenoble.fr
| Sample_contact_laboratory | Team7
| Sample_contact_department | U836
| Sample_contact_institute | INSERM
| Sample_contact_address | fortuné ferrini
| Sample_contact_city | La tronche
| Sample_contact_zip/postal_code | 38700
| Sample_contact_country | France
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM795nnn/GSM795841/suppl/GSM795841.CEL.gz
| Sample_series_id | GSE32100
| Sample_data_row_count | 54675
| |
|
GSM795842 | GPL570 |
|
Glio6 at 3% O2 with serum, biological rep2
|
Glioblastoma primary culture (with serum) cultivated at 3% of oxygen
|
tissue: brain
cell type: primary culture
cell line: Glio6
oxygen level: 3%
serum: yes
|
cell culture in normoxic conditions
|
Sample_geo_accession | GSM795842
| Sample_status | Public on Apr 05 2013
| Sample_submission_date | Sep 13 2011
| Sample_last_update_date | Apr 06 2013
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_growth_protocol_ch1 | Cells were cultured either in the presence of serum or in serum-free medium at different concentration of O2 (20%, 3% or 0.3%) in an hypoxic workstation
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA were extracted from cells with the MirVana isolation kit.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 200ng total RNA (Expression Analysis Technical Manual, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133plus2 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the GeneChip® Scanner 3000.
| Sample_data_processing | The data were analyzed with Expression console Suite (RMA) using Affymetrix default analysis settings and global scaling as normalization method.
| Sample_platform_id | GPL570
| Sample_contact_name | didier,,wion
| Sample_contact_email | didier.wion@ujf-grenoble.fr
| Sample_contact_laboratory | Team7
| Sample_contact_department | U836
| Sample_contact_institute | INSERM
| Sample_contact_address | fortuné ferrini
| Sample_contact_city | La tronche
| Sample_contact_zip/postal_code | 38700
| Sample_contact_country | France
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM795nnn/GSM795842/suppl/GSM795842.CEL.gz
| Sample_series_id | GSE32100
| Sample_data_row_count | 54675
| |
|
GSM795843 | GPL570 |
|
Glio6 at 3% O2 with serum, biological rep3
|
Glioblastoma primary culture (with serum) cultivated at 3% of oxygen
|
tissue: brain
cell type: primary culture
cell line: Glio6
oxygen level: 3%
serum: yes
|
cell culture in normoxic conditions
|
Sample_geo_accession | GSM795843
| Sample_status | Public on Apr 05 2013
| Sample_submission_date | Sep 13 2011
| Sample_last_update_date | Apr 06 2013
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_growth_protocol_ch1 | Cells were cultured either in the presence of serum or in serum-free medium at different concentration of O2 (20%, 3% or 0.3%) in an hypoxic workstation
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA were extracted from cells with the MirVana isolation kit.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 200ng total RNA (Expression Analysis Technical Manual, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133plus2 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the GeneChip® Scanner 3000.
| Sample_data_processing | The data were analyzed with Expression console Suite (RMA) using Affymetrix default analysis settings and global scaling as normalization method.
| Sample_platform_id | GPL570
| Sample_contact_name | didier,,wion
| Sample_contact_email | didier.wion@ujf-grenoble.fr
| Sample_contact_laboratory | Team7
| Sample_contact_department | U836
| Sample_contact_institute | INSERM
| Sample_contact_address | fortuné ferrini
| Sample_contact_city | La tronche
| Sample_contact_zip/postal_code | 38700
| Sample_contact_country | France
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM795nnn/GSM795843/suppl/GSM795843.CEL.gz
| Sample_series_id | GSE32100
| Sample_data_row_count | 54675
| |
|
GSM795845 | GPL570 |
|
Glio6 at 0.3% O2 with serum, biological rep1
|
Glioblastoma primary culture (with serum) cultivated at 0.3% of oxygen
|
tissue: brain
cell type: primary culture
cell line: Glio6
oxygen level: 0.3%
serum: yes
|
cell culture in hypoxic conditions
|
Sample_geo_accession | GSM795845
| Sample_status | Public on Apr 05 2013
| Sample_submission_date | Sep 13 2011
| Sample_last_update_date | Apr 06 2013
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_growth_protocol_ch1 | Cells were cultured either in the presence of serum or in serum-free medium at different concentration of O2 (20%, 3% or 0.3%) in an hypoxic workstation
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA were extracted from cells with the MirVana isolation kit.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 200ng total RNA (Expression Analysis Technical Manual, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133plus2 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the GeneChip® Scanner 3000.
| Sample_data_processing | The data were analyzed with Expression console Suite (RMA) using Affymetrix default analysis settings and global scaling as normalization method.
| Sample_platform_id | GPL570
| Sample_contact_name | didier,,wion
| Sample_contact_email | didier.wion@ujf-grenoble.fr
| Sample_contact_laboratory | Team7
| Sample_contact_department | U836
| Sample_contact_institute | INSERM
| Sample_contact_address | fortuné ferrini
| Sample_contact_city | La tronche
| Sample_contact_zip/postal_code | 38700
| Sample_contact_country | France
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM795nnn/GSM795845/suppl/GSM795845.CEL.gz
| Sample_series_id | GSE32100
| Sample_data_row_count | 54675
| |
|
GSM795847 | GPL570 |
|
Glio6 at 0.3% O2 with serum, biological rep2
|
Glioblastoma primary culture (with serum) cultivated at 0.3% of oxygen
|
tissue: brain
cell type: primary culture
cell line: Glio6
oxygen level: 0.3%
serum: yes
|
cell culture in hypoxic conditions
|
Sample_geo_accession | GSM795847
| Sample_status | Public on Apr 05 2013
| Sample_submission_date | Sep 13 2011
| Sample_last_update_date | Apr 06 2013
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_growth_protocol_ch1 | Cells were cultured either in the presence of serum or in serum-free medium at different concentration of O2 (20%, 3% or 0.3%) in an hypoxic workstation
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA were extracted from cells with the MirVana isolation kit.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 200ng total RNA (Expression Analysis Technical Manual, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133plus2 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the GeneChip® Scanner 3000.
| Sample_data_processing | The data were analyzed with Expression console Suite (RMA) using Affymetrix default analysis settings and global scaling as normalization method.
| Sample_platform_id | GPL570
| Sample_contact_name | didier,,wion
| Sample_contact_email | didier.wion@ujf-grenoble.fr
| Sample_contact_laboratory | Team7
| Sample_contact_department | U836
| Sample_contact_institute | INSERM
| Sample_contact_address | fortuné ferrini
| Sample_contact_city | La tronche
| Sample_contact_zip/postal_code | 38700
| Sample_contact_country | France
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM795nnn/GSM795847/suppl/GSM795847.CEL.gz
| Sample_series_id | GSE32100
| Sample_data_row_count | 54675
| |
|
GSM795848 | GPL570 |
|
Glio6 at 0.3% O2 with serum, biological rep3
|
Glioblastoma primary culture (with serum) cultivated at 0.3% of oxygen
|
tissue: brain
cell type: primary culture
cell line: Glio6
oxygen level: 0.3%
serum: yes
|
cell culture in hypoxic conditions
|
Sample_geo_accession | GSM795848
| Sample_status | Public on Apr 05 2013
| Sample_submission_date | Sep 13 2011
| Sample_last_update_date | Apr 06 2013
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_growth_protocol_ch1 | Cells were cultured either in the presence of serum or in serum-free medium at different concentration of O2 (20%, 3% or 0.3%) in an hypoxic workstation
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA were extracted from cells with the MirVana isolation kit.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 200ng total RNA (Expression Analysis Technical Manual, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133plus2 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the GeneChip® Scanner 3000.
| Sample_data_processing | The data were analyzed with Expression console Suite (RMA) using Affymetrix default analysis settings and global scaling as normalization method.
| Sample_platform_id | GPL570
| Sample_contact_name | didier,,wion
| Sample_contact_email | didier.wion@ujf-grenoble.fr
| Sample_contact_laboratory | Team7
| Sample_contact_department | U836
| Sample_contact_institute | INSERM
| Sample_contact_address | fortuné ferrini
| Sample_contact_city | La tronche
| Sample_contact_zip/postal_code | 38700
| Sample_contact_country | France
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM795nnn/GSM795848/suppl/GSM795848.CEL.gz
| Sample_series_id | GSE32100
| Sample_data_row_count | 54675
| |
|
GSM795849 | GPL570 |
|
Glio6 at 0.3% O2 with serum, biological rep4
|
Glioblastoma primary culture (with serum) cultivated at 0.3% of oxygen
|
tissue: brain
cell type: primary culture
cell line: Glio6
oxygen level: 0.3%
serum: yes
|
cell culture in hypoxic conditions
|
Sample_geo_accession | GSM795849
| Sample_status | Public on Apr 05 2013
| Sample_submission_date | Sep 13 2011
| Sample_last_update_date | Apr 06 2013
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_growth_protocol_ch1 | Cells were cultured either in the presence of serum or in serum-free medium at different concentration of O2 (20%, 3% or 0.3%) in an hypoxic workstation
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA were extracted from cells with the MirVana isolation kit.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 200ng total RNA (Expression Analysis Technical Manual, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133plus2 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the GeneChip® Scanner 3000.
| Sample_data_processing | The data were analyzed with Expression console Suite (RMA) using Affymetrix default analysis settings and global scaling as normalization method.
| Sample_platform_id | GPL570
| Sample_contact_name | didier,,wion
| Sample_contact_email | didier.wion@ujf-grenoble.fr
| Sample_contact_laboratory | Team7
| Sample_contact_department | U836
| Sample_contact_institute | INSERM
| Sample_contact_address | fortuné ferrini
| Sample_contact_city | La tronche
| Sample_contact_zip/postal_code | 38700
| Sample_contact_country | France
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM795nnn/GSM795849/suppl/GSM795849.CEL.gz
| Sample_series_id | GSE32100
| Sample_data_row_count | 54675
| |
|
|
|
Make groups for comparisons |
(2 groups will be compared at a time) |
|
Select GSMs and click on "Add groups" |
Enter the group name here: |
|
|
|