Search results for the GEO ID: GSE32103  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM795996 | GPL1261 |
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pregnant mammary gland of wild type animal, biological rep1
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mouse MG p17
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tissue: mammary gland
developmental stage: pregnancy day 17
genotype/variation: wild type
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WT-1
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| Sample_geo_accession | GSM795996
| | Sample_status | Public on Sep 01 2012
| | Sample_submission_date | Sep 13 2011
| | Sample_last_update_date | Sep 01 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from wild type and Elf5 KO mammary gland using TRIzol (Invitrogen, Carlsbad, CA) and then purified using the RNeasy Mini kit (Qiagen, Valencia, CA).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Total RNA was subjected to the standard Affymetrix labeling protocol to obtain biotinylated cRNA.
| | Sample_hyb_protocol | Biotinylated cRNA were hybridized to Affymetrix GeneChip Mouse Genome 430 2.0 Arrays.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip® Scanner.
| | Sample_data_processing | MAS5.0 algorithm in the Affy package of Bioconductor in the R statistical computing enviroment was used to generate expression summary values, followed by trimmed mean global normalization.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | SATRAJIT ,,SINHA
| | Sample_contact_email | SSINHA2@BUFFALO.EDU
| | Sample_contact_institute | SUNY AT bUFFALO
| | Sample_contact_address | 701 ELLICOTT STREET
| | Sample_contact_city | BUFFALO
| | Sample_contact_zip/postal_code | 14203
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM795nnn/GSM795996/suppl/GSM795996.CEL.gz
| | Sample_series_id | GSE32103
| | Sample_data_row_count | 45101
| | |
|
GSM795997 | GPL1261 |
|
pregnant mammary gland of wild type animal, biological rep2
|
mouse MG p17
|
tissue: mammary gland
developmental stage: pregnancy day 17
genotype/variation: wild type
|
WT-2
|
| Sample_geo_accession | GSM795997
| | Sample_status | Public on Sep 01 2012
| | Sample_submission_date | Sep 13 2011
| | Sample_last_update_date | Sep 01 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from wild type and Elf5 KO mammary gland using TRIzol (Invitrogen, Carlsbad, CA) and then purified using the RNeasy Mini kit (Qiagen, Valencia, CA).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Total RNA was subjected to the standard Affymetrix labeling protocol to obtain biotinylated cRNA.
| | Sample_hyb_protocol | Biotinylated cRNA were hybridized to Affymetrix GeneChip Mouse Genome 430 2.0 Arrays.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip® Scanner.
| | Sample_data_processing | MAS5.0 algorithm in the Affy package of Bioconductor in the R statistical computing enviroment was used to generate expression summary values, followed by trimmed mean global normalization.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | SATRAJIT ,,SINHA
| | Sample_contact_email | SSINHA2@BUFFALO.EDU
| | Sample_contact_institute | SUNY AT bUFFALO
| | Sample_contact_address | 701 ELLICOTT STREET
| | Sample_contact_city | BUFFALO
| | Sample_contact_zip/postal_code | 14203
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM795nnn/GSM795997/suppl/GSM795997.CEL.gz
| | Sample_series_id | GSE32103
| | Sample_data_row_count | 45101
| | |
|
GSM795998 | GPL1261 |
|
pregnant mammary gland of wild type animal, biological rep3
|
mouse MG p17
|
tissue: mammary gland
developmental stage: pregnancy day 17
genotype/variation: wild type
|
WT-3
|
| Sample_geo_accession | GSM795998
| | Sample_status | Public on Sep 01 2012
| | Sample_submission_date | Sep 13 2011
| | Sample_last_update_date | Sep 01 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from wild type and Elf5 KO mammary gland using TRIzol (Invitrogen, Carlsbad, CA) and then purified using the RNeasy Mini kit (Qiagen, Valencia, CA).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Total RNA was subjected to the standard Affymetrix labeling protocol to obtain biotinylated cRNA.
| | Sample_hyb_protocol | Biotinylated cRNA were hybridized to Affymetrix GeneChip Mouse Genome 430 2.0 Arrays.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip® Scanner.
| | Sample_data_processing | MAS5.0 algorithm in the Affy package of Bioconductor in the R statistical computing enviroment was used to generate expression summary values, followed by trimmed mean global normalization.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | SATRAJIT ,,SINHA
| | Sample_contact_email | SSINHA2@BUFFALO.EDU
| | Sample_contact_institute | SUNY AT bUFFALO
| | Sample_contact_address | 701 ELLICOTT STREET
| | Sample_contact_city | BUFFALO
| | Sample_contact_zip/postal_code | 14203
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM795nnn/GSM795998/suppl/GSM795998.CEL.gz
| | Sample_series_id | GSE32103
| | Sample_data_row_count | 45101
| | |
|
GSM795999 | GPL1261 |
|
pregnant mammary gland of Elf5 KO animal, biological rep1
|
mouse MG p17
|
tissue: mammary gland
developmental stage: pregnancy day 17
genotype/variation: Elf5 KO
|
Elf5-KO-1
|
| Sample_geo_accession | GSM795999
| | Sample_status | Public on Sep 01 2012
| | Sample_submission_date | Sep 13 2011
| | Sample_last_update_date | Sep 01 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from wild type and Elf5 KO mammary gland using TRIzol (Invitrogen, Carlsbad, CA) and then purified using the RNeasy Mini kit (Qiagen, Valencia, CA).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Total RNA was subjected to the standard Affymetrix labeling protocol to obtain biotinylated cRNA.
| | Sample_hyb_protocol | Biotinylated cRNA were hybridized to Affymetrix GeneChip Mouse Genome 430 2.0 Arrays.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip® Scanner.
| | Sample_data_processing | MAS5.0 algorithm in the Affy package of Bioconductor in the R statistical computing enviroment was used to generate expression summary values, followed by trimmed mean global normalization.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | SATRAJIT ,,SINHA
| | Sample_contact_email | SSINHA2@BUFFALO.EDU
| | Sample_contact_institute | SUNY AT bUFFALO
| | Sample_contact_address | 701 ELLICOTT STREET
| | Sample_contact_city | BUFFALO
| | Sample_contact_zip/postal_code | 14203
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM795nnn/GSM795999/suppl/GSM795999.CEL.gz
| | Sample_series_id | GSE32103
| | Sample_data_row_count | 45101
| | |
|
GSM796000 | GPL1261 |
|
pregnant mammary gland of Elf5 KO animal, biological rep2
|
mouse MG p17
|
tissue: mammary gland
developmental stage: pregnancy day 17
genotype/variation: Elf5 KO
|
Elf5-KO-2
|
| Sample_geo_accession | GSM796000
| | Sample_status | Public on Sep 01 2012
| | Sample_submission_date | Sep 13 2011
| | Sample_last_update_date | Sep 01 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from wild type and Elf5 KO mammary gland using TRIzol (Invitrogen, Carlsbad, CA) and then purified using the RNeasy Mini kit (Qiagen, Valencia, CA).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Total RNA was subjected to the standard Affymetrix labeling protocol to obtain biotinylated cRNA.
| | Sample_hyb_protocol | Biotinylated cRNA were hybridized to Affymetrix GeneChip Mouse Genome 430 2.0 Arrays.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip® Scanner.
| | Sample_data_processing | MAS5.0 algorithm in the Affy package of Bioconductor in the R statistical computing enviroment was used to generate expression summary values, followed by trimmed mean global normalization.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | SATRAJIT ,,SINHA
| | Sample_contact_email | SSINHA2@BUFFALO.EDU
| | Sample_contact_institute | SUNY AT bUFFALO
| | Sample_contact_address | 701 ELLICOTT STREET
| | Sample_contact_city | BUFFALO
| | Sample_contact_zip/postal_code | 14203
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM796nnn/GSM796000/suppl/GSM796000.CEL.gz
| | Sample_series_id | GSE32103
| | Sample_data_row_count | 45101
| | |
|
GSM796001 | GPL1261 |
|
pregnant mammary gland of Elf5 KO animal, biological rep3
|
mouse MG p17
|
tissue: mammary gland
developmental stage: pregnancy day 17
genotype/variation: Elf5 KO
|
Elf5-KO-3
|
| Sample_geo_accession | GSM796001
| | Sample_status | Public on Sep 01 2012
| | Sample_submission_date | Sep 13 2011
| | Sample_last_update_date | Sep 01 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from wild type and Elf5 KO mammary gland using TRIzol (Invitrogen, Carlsbad, CA) and then purified using the RNeasy Mini kit (Qiagen, Valencia, CA).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Total RNA was subjected to the standard Affymetrix labeling protocol to obtain biotinylated cRNA.
| | Sample_hyb_protocol | Biotinylated cRNA were hybridized to Affymetrix GeneChip Mouse Genome 430 2.0 Arrays.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip® Scanner.
| | Sample_data_processing | MAS5.0 algorithm in the Affy package of Bioconductor in the R statistical computing enviroment was used to generate expression summary values, followed by trimmed mean global normalization.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | SATRAJIT ,,SINHA
| | Sample_contact_email | SSINHA2@BUFFALO.EDU
| | Sample_contact_institute | SUNY AT bUFFALO
| | Sample_contact_address | 701 ELLICOTT STREET
| | Sample_contact_city | BUFFALO
| | Sample_contact_zip/postal_code | 14203
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM796nnn/GSM796001/suppl/GSM796001.CEL.gz
| | Sample_series_id | GSE32103
| | Sample_data_row_count | 45101
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