Search results for the GEO ID: GSE32199  |
(Click on the check boxes provided under "Select for analysis", to initiate grouping) |
(Once the selection is made, click on "Add groups" in "Make groups for comparison", to make a group. Scroll down) |
|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM797837 | GPL1261 |
|
Untreated XEN cells rep1
|
IM8A1 XEN cells
|
strain: PO strain
treatment group: untreated
|
Gene expression data of untreated XEN cells
|
| Sample_geo_accession | GSM797837
| | Sample_status | Public on Nov 10 2011
| | Sample_submission_date | Sep 18 2011
| | Sample_last_update_date | Nov 10 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | XEN cells were treated with BMP2 (20 ng/ml), activin A (30 ng/ml), both or niether for 6 days.
| | Sample_growth_protocol_ch1 | IM8A1 XEN cells were grown in GMEM+10%FBS at 37oC, 5%CO2 in a humidified environment
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated with QIAGEN's RNeasy Midi kit, and cDNA was prepared using Affymetrix one-cycle kit.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Samples were enzymatically fragmented and biotinylated using the WT Terminal Labeling Kit (Affymetrix)
| | Sample_hyb_protocol | EukGE-WS2v5
| | Sample_scan_protocol | Affymetrix Gene Chip Scanner 3000
| | Sample_data_processing | GCOS 1.4; Algorithm: ExpressionStat 5.0
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Tilo,,Kunath
| | Sample_contact_email | tilo.kunath@ed.ac.uk
| | Sample_contact_phone | +44 (0) 131 650 5868
| | Sample_contact_fax | +44 (0) 131 650 7773
| | Sample_contact_department | University of Edinburgh
| | Sample_contact_institute | Institute for Stem Cell Research
| | Sample_contact_address | West Mains Road
| | Sample_contact_city | Edinburgh
| | Sample_contact_zip/postal_code | EH9 3QX
| | Sample_contact_country | United Kingdom
| | Sample_contact_web_link | www.iscr.ed.ac.uk
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM797nnn/GSM797837/suppl/GSM797837.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM797nnn/GSM797837/suppl/GSM797837.CHP.gz
| | Sample_series_id | GSE32199
| | Sample_data_row_count | 45101
| | |
|
GSM797838 | GPL1261 |
|
Activin-treated XEN cells
|
IM8A1 XEN cells
|
strain: PO strain
treatment group: Activin-treated
|
Gene expression data of Activin-treated XEN cells
|
| Sample_geo_accession | GSM797838
| | Sample_status | Public on Nov 10 2011
| | Sample_submission_date | Sep 18 2011
| | Sample_last_update_date | Nov 10 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | XEN cells were treated with BMP2 (20 ng/ml), activin A (30 ng/ml), both or niether for 6 days.
| | Sample_growth_protocol_ch1 | IM8A1 XEN cells were grown in GMEM+10%FBS at 37oC, 5%CO2 in a humidified environment
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated with QIAGEN's RNeasy Midi kit, and cDNA was prepared using Affymetrix one-cycle kit.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Samples were enzymatically fragmented and biotinylated using the WT Terminal Labeling Kit (Affymetrix)
| | Sample_hyb_protocol | EukGE-WS2v5
| | Sample_scan_protocol | Affymetrix Gene Chip Scanner 3000
| | Sample_data_processing | GCOS 1.4; Algorithm: ExpressionStat 5.0
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Tilo,,Kunath
| | Sample_contact_email | tilo.kunath@ed.ac.uk
| | Sample_contact_phone | +44 (0) 131 650 5868
| | Sample_contact_fax | +44 (0) 131 650 7773
| | Sample_contact_department | University of Edinburgh
| | Sample_contact_institute | Institute for Stem Cell Research
| | Sample_contact_address | West Mains Road
| | Sample_contact_city | Edinburgh
| | Sample_contact_zip/postal_code | EH9 3QX
| | Sample_contact_country | United Kingdom
| | Sample_contact_web_link | www.iscr.ed.ac.uk
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM797nnn/GSM797838/suppl/GSM797838.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM797nnn/GSM797838/suppl/GSM797838.CHP.gz
| | Sample_series_id | GSE32199
| | Sample_data_row_count | 45101
| | |
|
GSM797839 | GPL1261 |
|
BMP2-treated XEN cells rep1
|
IM8A1 XEN cells
|
strain: PO strain
treatment group: BMP2-treated
|
Gene expression data of BMP2-treated XEN cells
|
| Sample_geo_accession | GSM797839
| | Sample_status | Public on Nov 10 2011
| | Sample_submission_date | Sep 18 2011
| | Sample_last_update_date | Nov 10 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | XEN cells were treated with BMP2 (20 ng/ml), activin A (30 ng/ml), both or niether for 6 days.
| | Sample_growth_protocol_ch1 | IM8A1 XEN cells were grown in GMEM+10%FBS at 37oC, 5%CO2 in a humidified environment
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated with QIAGEN's RNeasy Midi kit, and cDNA was prepared using Affymetrix one-cycle kit.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Samples were enzymatically fragmented and biotinylated using the WT Terminal Labeling Kit (Affymetrix)
| | Sample_hyb_protocol | EukGE-WS2v5
| | Sample_scan_protocol | Affymetrix Gene Chip Scanner 3000
| | Sample_data_processing | GCOS 1.4; Algorithm: ExpressionStat 5.0
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Tilo,,Kunath
| | Sample_contact_email | tilo.kunath@ed.ac.uk
| | Sample_contact_phone | +44 (0) 131 650 5868
| | Sample_contact_fax | +44 (0) 131 650 7773
| | Sample_contact_department | University of Edinburgh
| | Sample_contact_institute | Institute for Stem Cell Research
| | Sample_contact_address | West Mains Road
| | Sample_contact_city | Edinburgh
| | Sample_contact_zip/postal_code | EH9 3QX
| | Sample_contact_country | United Kingdom
| | Sample_contact_web_link | www.iscr.ed.ac.uk
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM797nnn/GSM797839/suppl/GSM797839.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM797nnn/GSM797839/suppl/GSM797839.CHP.gz
| | Sample_series_id | GSE32199
| | Sample_data_row_count | 45101
| | |
|
GSM797840 | GPL1261 |
|
Activin+BMP2-treated XEN cells
|
IM8A1 XEN cells
|
strain: PO strain
treatment group: Activin+BMP2-treated
|
Gene expression data of Activin+BMP2-treated XEN cells
|
| Sample_geo_accession | GSM797840
| | Sample_status | Public on Nov 10 2011
| | Sample_submission_date | Sep 18 2011
| | Sample_last_update_date | Nov 10 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | XEN cells were treated with BMP2 (20 ng/ml), activin A (30 ng/ml), both or niether for 6 days.
| | Sample_growth_protocol_ch1 | IM8A1 XEN cells were grown in GMEM+10%FBS at 37oC, 5%CO2 in a humidified environment
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated with QIAGEN's RNeasy Midi kit, and cDNA was prepared using Affymetrix one-cycle kit.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Samples were enzymatically fragmented and biotinylated using the WT Terminal Labeling Kit (Affymetrix)
| | Sample_hyb_protocol | EukGE-WS2v5
| | Sample_scan_protocol | Affymetrix Gene Chip Scanner 3000
| | Sample_data_processing | GCOS 1.4; Algorithm: ExpressionStat 5.0
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Tilo,,Kunath
| | Sample_contact_email | tilo.kunath@ed.ac.uk
| | Sample_contact_phone | +44 (0) 131 650 5868
| | Sample_contact_fax | +44 (0) 131 650 7773
| | Sample_contact_department | University of Edinburgh
| | Sample_contact_institute | Institute for Stem Cell Research
| | Sample_contact_address | West Mains Road
| | Sample_contact_city | Edinburgh
| | Sample_contact_zip/postal_code | EH9 3QX
| | Sample_contact_country | United Kingdom
| | Sample_contact_web_link | www.iscr.ed.ac.uk
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM797nnn/GSM797840/suppl/GSM797840.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM797nnn/GSM797840/suppl/GSM797840.CHP.gz
| | Sample_series_id | GSE32199
| | Sample_data_row_count | 45101
| | |
|
GSM797841 | GPL1261 |
|
Untreated XEN cells rep2
|
IM8A1 XEN cells
|
strain: PO strain
treatment group: untreated
|
Gene expression data of untreated XEN cells
|
| Sample_geo_accession | GSM797841
| | Sample_status | Public on Nov 10 2011
| | Sample_submission_date | Sep 18 2011
| | Sample_last_update_date | Nov 10 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | XEN cells were treated with BMP2 (20 ng/ml), activin A (30 ng/ml), both or niether for 6 days.
| | Sample_growth_protocol_ch1 | IM8A1 XEN cells were grown in GMEM+10%FBS at 37oC, 5%CO2 in a humidified environment
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated with QIAGEN's RNeasy Midi kit, and cDNA was prepared using Affymetrix one-cycle kit.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Samples were enzymatically fragmented and biotinylated using the WT Terminal Labeling Kit (Affymetrix)
| | Sample_hyb_protocol | EukGE-WS2v5
| | Sample_scan_protocol | Affymetrix Gene Chip Scanner 3000
| | Sample_data_processing | GCOS 1.4; Algorithm: ExpressionStat 5.0
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Tilo,,Kunath
| | Sample_contact_email | tilo.kunath@ed.ac.uk
| | Sample_contact_phone | +44 (0) 131 650 5868
| | Sample_contact_fax | +44 (0) 131 650 7773
| | Sample_contact_department | University of Edinburgh
| | Sample_contact_institute | Institute for Stem Cell Research
| | Sample_contact_address | West Mains Road
| | Sample_contact_city | Edinburgh
| | Sample_contact_zip/postal_code | EH9 3QX
| | Sample_contact_country | United Kingdom
| | Sample_contact_web_link | www.iscr.ed.ac.uk
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM797nnn/GSM797841/suppl/GSM797841.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM797nnn/GSM797841/suppl/GSM797841.CHP.gz
| | Sample_series_id | GSE32199
| | Sample_data_row_count | 45101
| | |
|
GSM797842 | GPL1261 |
|
BMP2-treated XEN cells rep2
|
IM8A1 XEN cells
|
strain: PO strain
treatment group: BMP2-treated
|
Gene expression data of BMP2-treated XEN cells
|
| Sample_geo_accession | GSM797842
| | Sample_status | Public on Nov 10 2011
| | Sample_submission_date | Sep 18 2011
| | Sample_last_update_date | Nov 10 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | XEN cells were treated with BMP2 (20 ng/ml), activin A (30 ng/ml), both or niether for 6 days.
| | Sample_growth_protocol_ch1 | IM8A1 XEN cells were grown in GMEM+10%FBS at 37oC, 5%CO2 in a humidified environment
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated with QIAGEN's RNeasy Midi kit, and cDNA was prepared using Affymetrix one-cycle kit.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Samples were enzymatically fragmented and biotinylated using the WT Terminal Labeling Kit (Affymetrix)
| | Sample_hyb_protocol | EukGE-WS2v5
| | Sample_scan_protocol | Affymetrix Gene Chip Scanner 3000
| | Sample_data_processing | GCOS 1.4; Algorithm: ExpressionStat 5.0
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Tilo,,Kunath
| | Sample_contact_email | tilo.kunath@ed.ac.uk
| | Sample_contact_phone | +44 (0) 131 650 5868
| | Sample_contact_fax | +44 (0) 131 650 7773
| | Sample_contact_department | University of Edinburgh
| | Sample_contact_institute | Institute for Stem Cell Research
| | Sample_contact_address | West Mains Road
| | Sample_contact_city | Edinburgh
| | Sample_contact_zip/postal_code | EH9 3QX
| | Sample_contact_country | United Kingdom
| | Sample_contact_web_link | www.iscr.ed.ac.uk
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM797nnn/GSM797842/suppl/GSM797842.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM797nnn/GSM797842/suppl/GSM797842.CHP.gz
| | Sample_series_id | GSE32199
| | Sample_data_row_count | 45101
| | |
|
| |
| |
Make groups for comparisons |
(2 groups will be compared at a time) |
|
| Select GSMs and click on "Add groups" |
Enter the group name here: |
|
|
|
