Search results for the GEO ID: GSE32280  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM799722 | GPL570 |
|
MDD patient 3 before treatment
|
MDD patient 3 before treatment
|
tissue: peripheral blood
cell type: lymphocytes
disease status: MDD patient
treatment: before treatment
|
CB2007224-D3A.CEL
MDD patient 3 before treatment with venlafaxine
|
| Sample_geo_accession | GSM799722
| | Sample_status | Public on Mar 21 2012
| | Sample_submission_date | Sep 21 2011
| | Sample_last_update_date | Mar 21 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | Venous peripheral blood from fasting patients and healthy controls were collected during 7am to 9am.Peripheral blood lymphocytes were separated by Ficoll gradient centrifugation using Ficoll-PlaqueTM Plus (GE, Sweden) according to the manufacturer's protocol.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from lymphocytes using Trizol reagent (Invitrogen) according to the manufacturer's protocol. RNA concentrations were determined by Nanodrop ND-1000 (Nanodrop Technologies, Wilmington, DE). RNA quality was assessed on an Agilent 2100 Bioanalyzer
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Total RNA were amplified, labeled and purified by using GeneChip 3’IVT Express Kit (Cat#901229, Affymetrix, Santa Clara, CA, US) followed the manufacturer’s instructions to obtain biotin labeled cRNA.
| | Sample_hyb_protocol | Array hybridization and wash was performed using GeneChip® Hybridization, Wash and Stain Kit (Cat#900720, Affymetrix, Santa Clara, CA, US)in Hybridization Oven 645 (Cat#00-0331-220V, Affymetrix, Santa Clara, CA, US)and Fluidics Station 450 (Cat#00-0079, Affymetrix, Santa Clara, CA, US) followed the manufacturer’s instructions.
| | Sample_scan_protocol | Slides were scanned by GeneChip® Scanner 3000 (Cat#00-00212, Affymetrix, Santa Clara, CA, US) and Command Console Software 3.1 (Affymetrix, Santa Clara, CA, US) with default settings.
| | Sample_data_processing | Raw data were normalized by RMA method, Gene Spring Software 11.0 (Agilent technologies, Santa Clara, CA, US). The values were log2 transformed.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Zezhi,,Li
| | Sample_contact_email | lizezhi1981@yahoo.cn
| | Sample_contact_phone | +86 13564648631
| | Sample_contact_department | Division of Mood Disorders
| | Sample_contact_institute | Shanghai Mental Health Center, Shanghai Jiao Tong University School of Medicine, Shanghai, China
| | Sample_contact_address | 600 South Wan Ping Road Shanghai 200030, China
| | Sample_contact_city | Shanghai
| | Sample_contact_zip/postal_code | 200030
| | Sample_contact_country | China
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM799nnn/GSM799722/suppl/GSM799722.CEL.gz
| | Sample_series_id | GSE32280
| | Sample_data_row_count | 54675
| | |
|
GSM799723 | GPL570 |
|
MDD patient 4 before treatment
|
MDD patient 4 before treatment
|
tissue: peripheral blood
cell type: lymphocytes
disease status: MDD patient
treatment: before treatment
|
CB2007224-D4A.CEL
MDD patient 4 before treatment with venlafaxine
|
| Sample_geo_accession | GSM799723
| | Sample_status | Public on Mar 21 2012
| | Sample_submission_date | Sep 21 2011
| | Sample_last_update_date | Mar 21 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | Venous peripheral blood from fasting patients and healthy controls were collected during 7am to 9am.Peripheral blood lymphocytes were separated by Ficoll gradient centrifugation using Ficoll-PlaqueTM Plus (GE, Sweden) according to the manufacturer's protocol.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from lymphocytes using Trizol reagent (Invitrogen) according to the manufacturer's protocol. RNA concentrations were determined by Nanodrop ND-1000 (Nanodrop Technologies, Wilmington, DE). RNA quality was assessed on an Agilent 2100 Bioanalyzer
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Total RNA were amplified, labeled and purified by using GeneChip 3’IVT Express Kit (Cat#901229, Affymetrix, Santa Clara, CA, US) followed the manufacturer’s instructions to obtain biotin labeled cRNA.
| | Sample_hyb_protocol | Array hybridization and wash was performed using GeneChip® Hybridization, Wash and Stain Kit (Cat#900720, Affymetrix, Santa Clara, CA, US)in Hybridization Oven 645 (Cat#00-0331-220V, Affymetrix, Santa Clara, CA, US)and Fluidics Station 450 (Cat#00-0079, Affymetrix, Santa Clara, CA, US) followed the manufacturer’s instructions.
| | Sample_scan_protocol | Slides were scanned by GeneChip® Scanner 3000 (Cat#00-00212, Affymetrix, Santa Clara, CA, US) and Command Console Software 3.1 (Affymetrix, Santa Clara, CA, US) with default settings.
| | Sample_data_processing | Raw data were normalized by RMA method, Gene Spring Software 11.0 (Agilent technologies, Santa Clara, CA, US). The values were log2 transformed.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Zezhi,,Li
| | Sample_contact_email | lizezhi1981@yahoo.cn
| | Sample_contact_phone | +86 13564648631
| | Sample_contact_department | Division of Mood Disorders
| | Sample_contact_institute | Shanghai Mental Health Center, Shanghai Jiao Tong University School of Medicine, Shanghai, China
| | Sample_contact_address | 600 South Wan Ping Road Shanghai 200030, China
| | Sample_contact_city | Shanghai
| | Sample_contact_zip/postal_code | 200030
| | Sample_contact_country | China
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM799nnn/GSM799723/suppl/GSM799723.CEL.gz
| | Sample_series_id | GSE32280
| | Sample_data_row_count | 54675
| | |
|
GSM799724 | GPL570 |
|
MDD patient 1 before treatment
|
MDD patient 1 before treatment
|
tissue: peripheral blood
cell type: lymphocytes
disease status: MDD patient
treatment: before treatment
|
CB2007224-D1A.CEL
MDD patient 1 before treatment with venlafaxine
|
| Sample_geo_accession | GSM799724
| | Sample_status | Public on Mar 21 2012
| | Sample_submission_date | Sep 21 2011
| | Sample_last_update_date | Mar 21 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | Venous peripheral blood from fasting patients and healthy controls were collected during 7am to 9am.Peripheral blood lymphocytes were separated by Ficoll gradient centrifugation using Ficoll-PlaqueTM Plus (GE, Sweden) according to the manufacturer's protocol.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from lymphocytes using Trizol reagent (Invitrogen) according to the manufacturer's protocol. RNA concentrations were determined by Nanodrop ND-1000 (Nanodrop Technologies, Wilmington, DE). RNA quality was assessed on an Agilent 2100 Bioanalyzer
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Total RNA were amplified, labeled and purified by using GeneChip 3’IVT Express Kit (Cat#901229, Affymetrix, Santa Clara, CA, US) followed the manufacturer’s instructions to obtain biotin labeled cRNA.
| | Sample_hyb_protocol | Array hybridization and wash was performed using GeneChip® Hybridization, Wash and Stain Kit (Cat#900720, Affymetrix, Santa Clara, CA, US)in Hybridization Oven 645 (Cat#00-0331-220V, Affymetrix, Santa Clara, CA, US)and Fluidics Station 450 (Cat#00-0079, Affymetrix, Santa Clara, CA, US) followed the manufacturer’s instructions.
| | Sample_scan_protocol | Slides were scanned by GeneChip® Scanner 3000 (Cat#00-00212, Affymetrix, Santa Clara, CA, US) and Command Console Software 3.1 (Affymetrix, Santa Clara, CA, US) with default settings.
| | Sample_data_processing | Raw data were normalized by RMA method, Gene Spring Software 11.0 (Agilent technologies, Santa Clara, CA, US). The values were log2 transformed.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Zezhi,,Li
| | Sample_contact_email | lizezhi1981@yahoo.cn
| | Sample_contact_phone | +86 13564648631
| | Sample_contact_department | Division of Mood Disorders
| | Sample_contact_institute | Shanghai Mental Health Center, Shanghai Jiao Tong University School of Medicine, Shanghai, China
| | Sample_contact_address | 600 South Wan Ping Road Shanghai 200030, China
| | Sample_contact_city | Shanghai
| | Sample_contact_zip/postal_code | 200030
| | Sample_contact_country | China
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM799nnn/GSM799724/suppl/GSM799724.CEL.gz
| | Sample_series_id | GSE32280
| | Sample_data_row_count | 54675
| | |
|
GSM799725 | GPL570 |
|
MDD patient 2 before treatment
|
MDD patient 2 before treatment
|
tissue: peripheral blood
cell type: lymphocytes
disease status: MDD patient
treatment: before treatment
|
CB2007224-D2A.CEL
MDD patient 2 before treatment with venlafaxine
|
| Sample_geo_accession | GSM799725
| | Sample_status | Public on Mar 21 2012
| | Sample_submission_date | Sep 21 2011
| | Sample_last_update_date | Mar 21 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | Venous peripheral blood from fasting patients and healthy controls were collected during 7am to 9am.Peripheral blood lymphocytes were separated by Ficoll gradient centrifugation using Ficoll-PlaqueTM Plus (GE, Sweden) according to the manufacturer's protocol.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from lymphocytes using Trizol reagent (Invitrogen) according to the manufacturer's protocol. RNA concentrations were determined by Nanodrop ND-1000 (Nanodrop Technologies, Wilmington, DE). RNA quality was assessed on an Agilent 2100 Bioanalyzer
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Total RNA were amplified, labeled and purified by using GeneChip 3’IVT Express Kit (Cat#901229, Affymetrix, Santa Clara, CA, US) followed the manufacturer’s instructions to obtain biotin labeled cRNA.
| | Sample_hyb_protocol | Array hybridization and wash was performed using GeneChip® Hybridization, Wash and Stain Kit (Cat#900720, Affymetrix, Santa Clara, CA, US)in Hybridization Oven 645 (Cat#00-0331-220V, Affymetrix, Santa Clara, CA, US)and Fluidics Station 450 (Cat#00-0079, Affymetrix, Santa Clara, CA, US) followed the manufacturer’s instructions.
| | Sample_scan_protocol | Slides were scanned by GeneChip® Scanner 3000 (Cat#00-00212, Affymetrix, Santa Clara, CA, US) and Command Console Software 3.1 (Affymetrix, Santa Clara, CA, US) with default settings.
| | Sample_data_processing | Raw data were normalized by RMA method, Gene Spring Software 11.0 (Agilent technologies, Santa Clara, CA, US). The values were log2 transformed.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Zezhi,,Li
| | Sample_contact_email | lizezhi1981@yahoo.cn
| | Sample_contact_phone | +86 13564648631
| | Sample_contact_department | Division of Mood Disorders
| | Sample_contact_institute | Shanghai Mental Health Center, Shanghai Jiao Tong University School of Medicine, Shanghai, China
| | Sample_contact_address | 600 South Wan Ping Road Shanghai 200030, China
| | Sample_contact_city | Shanghai
| | Sample_contact_zip/postal_code | 200030
| | Sample_contact_country | China
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM799nnn/GSM799725/suppl/GSM799725.CEL.gz
| | Sample_series_id | GSE32280
| | Sample_data_row_count | 54675
| | |
|
GSM799726 | GPL570 |
|
MDD patient 5 before treatment
|
MDD patient 5 before treatment
|
tissue: peripheral blood
cell type: lymphocytes
disease status: MDD patient
treatment: before treatment
|
CB2007224-D5A.CEL
MDD patient 5 before treatment with venlafaxine
|
| Sample_geo_accession | GSM799726
| | Sample_status | Public on Mar 21 2012
| | Sample_submission_date | Sep 21 2011
| | Sample_last_update_date | Mar 21 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | Venous peripheral blood from fasting patients and healthy controls were collected during 7am to 9am.Peripheral blood lymphocytes were separated by Ficoll gradient centrifugation using Ficoll-PlaqueTM Plus (GE, Sweden) according to the manufacturer's protocol.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from lymphocytes using Trizol reagent (Invitrogen) according to the manufacturer's protocol. RNA concentrations were determined by Nanodrop ND-1000 (Nanodrop Technologies, Wilmington, DE). RNA quality was assessed on an Agilent 2100 Bioanalyzer
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Total RNA were amplified, labeled and purified by using GeneChip 3’IVT Express Kit (Cat#901229, Affymetrix, Santa Clara, CA, US) followed the manufacturer’s instructions to obtain biotin labeled cRNA.
| | Sample_hyb_protocol | Array hybridization and wash was performed using GeneChip® Hybridization, Wash and Stain Kit (Cat#900720, Affymetrix, Santa Clara, CA, US)in Hybridization Oven 645 (Cat#00-0331-220V, Affymetrix, Santa Clara, CA, US)and Fluidics Station 450 (Cat#00-0079, Affymetrix, Santa Clara, CA, US) followed the manufacturer’s instructions.
| | Sample_scan_protocol | Slides were scanned by GeneChip® Scanner 3000 (Cat#00-00212, Affymetrix, Santa Clara, CA, US) and Command Console Software 3.1 (Affymetrix, Santa Clara, CA, US) with default settings.
| | Sample_data_processing | Raw data were normalized by RMA method, Gene Spring Software 11.0 (Agilent technologies, Santa Clara, CA, US). The values were log2 transformed.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Zezhi,,Li
| | Sample_contact_email | lizezhi1981@yahoo.cn
| | Sample_contact_phone | +86 13564648631
| | Sample_contact_department | Division of Mood Disorders
| | Sample_contact_institute | Shanghai Mental Health Center, Shanghai Jiao Tong University School of Medicine, Shanghai, China
| | Sample_contact_address | 600 South Wan Ping Road Shanghai 200030, China
| | Sample_contact_city | Shanghai
| | Sample_contact_zip/postal_code | 200030
| | Sample_contact_country | China
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM799nnn/GSM799726/suppl/GSM799726.CEL.gz
| | Sample_series_id | GSE32280
| | Sample_data_row_count | 54675
| | |
|
GSM799727 | GPL570 |
|
health control 1
|
health control 1
|
tissue: peripheral blood
cell type: lymphocytes
disease status: healthy control
|
CB2007224-C1.CEL
health control 1
|
| Sample_geo_accession | GSM799727
| | Sample_status | Public on Mar 21 2012
| | Sample_submission_date | Sep 21 2011
| | Sample_last_update_date | Mar 21 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | Venous peripheral blood from fasting patients and healthy controls were collected during 7am to 9am.Peripheral blood lymphocytes were separated by Ficoll gradient centrifugation using Ficoll-PlaqueTM Plus (GE, Sweden) according to the manufacturer's protocol.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from lymphocytes using Trizol reagent (Invitrogen) according to the manufacturer's protocol. RNA concentrations were determined by Nanodrop ND-1000 (Nanodrop Technologies, Wilmington, DE). RNA quality was assessed on an Agilent 2100 Bioanalyzer
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Total RNA were amplified, labeled and purified by using GeneChip 3’IVT Express Kit (Cat#901229, Affymetrix, Santa Clara, CA, US) followed the manufacturer’s instructions to obtain biotin labeled cRNA.
| | Sample_hyb_protocol | Array hybridization and wash was performed using GeneChip® Hybridization, Wash and Stain Kit (Cat#900720, Affymetrix, Santa Clara, CA, US)in Hybridization Oven 645 (Cat#00-0331-220V, Affymetrix, Santa Clara, CA, US)and Fluidics Station 450 (Cat#00-0079, Affymetrix, Santa Clara, CA, US) followed the manufacturer’s instructions.
| | Sample_scan_protocol | Slides were scanned by GeneChip® Scanner 3000 (Cat#00-00212, Affymetrix, Santa Clara, CA, US) and Command Console Software 3.1 (Affymetrix, Santa Clara, CA, US) with default settings.
| | Sample_data_processing | Raw data were normalized by RMA method, Gene Spring Software 11.0 (Agilent technologies, Santa Clara, CA, US). The values were log2 transformed.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Zezhi,,Li
| | Sample_contact_email | lizezhi1981@yahoo.cn
| | Sample_contact_phone | +86 13564648631
| | Sample_contact_department | Division of Mood Disorders
| | Sample_contact_institute | Shanghai Mental Health Center, Shanghai Jiao Tong University School of Medicine, Shanghai, China
| | Sample_contact_address | 600 South Wan Ping Road Shanghai 200030, China
| | Sample_contact_city | Shanghai
| | Sample_contact_zip/postal_code | 200030
| | Sample_contact_country | China
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM799nnn/GSM799727/suppl/GSM799727.CEL.gz
| | Sample_series_id | GSE32280
| | Sample_data_row_count | 54675
| | |
|
GSM799728 | GPL570 |
|
health control 2
|
health control 2
|
tissue: peripheral blood
cell type: lymphocytes
disease status: healthy control
|
CB2007224-C2.CEL
health control 2
|
| Sample_geo_accession | GSM799728
| | Sample_status | Public on Mar 21 2012
| | Sample_submission_date | Sep 21 2011
| | Sample_last_update_date | Mar 21 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | Venous peripheral blood from fasting patients and healthy controls were collected during 7am to 9am.Peripheral blood lymphocytes were separated by Ficoll gradient centrifugation using Ficoll-PlaqueTM Plus (GE, Sweden) according to the manufacturer's protocol.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from lymphocytes using Trizol reagent (Invitrogen) according to the manufacturer's protocol. RNA concentrations were determined by Nanodrop ND-1000 (Nanodrop Technologies, Wilmington, DE). RNA quality was assessed on an Agilent 2100 Bioanalyzer
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Total RNA were amplified, labeled and purified by using GeneChip 3’IVT Express Kit (Cat#901229, Affymetrix, Santa Clara, CA, US) followed the manufacturer’s instructions to obtain biotin labeled cRNA.
| | Sample_hyb_protocol | Array hybridization and wash was performed using GeneChip® Hybridization, Wash and Stain Kit (Cat#900720, Affymetrix, Santa Clara, CA, US)in Hybridization Oven 645 (Cat#00-0331-220V, Affymetrix, Santa Clara, CA, US)and Fluidics Station 450 (Cat#00-0079, Affymetrix, Santa Clara, CA, US) followed the manufacturer’s instructions.
| | Sample_scan_protocol | Slides were scanned by GeneChip® Scanner 3000 (Cat#00-00212, Affymetrix, Santa Clara, CA, US) and Command Console Software 3.1 (Affymetrix, Santa Clara, CA, US) with default settings.
| | Sample_data_processing | Raw data were normalized by RMA method, Gene Spring Software 11.0 (Agilent technologies, Santa Clara, CA, US). The values were log2 transformed.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Zezhi,,Li
| | Sample_contact_email | lizezhi1981@yahoo.cn
| | Sample_contact_phone | +86 13564648631
| | Sample_contact_department | Division of Mood Disorders
| | Sample_contact_institute | Shanghai Mental Health Center, Shanghai Jiao Tong University School of Medicine, Shanghai, China
| | Sample_contact_address | 600 South Wan Ping Road Shanghai 200030, China
| | Sample_contact_city | Shanghai
| | Sample_contact_zip/postal_code | 200030
| | Sample_contact_country | China
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM799nnn/GSM799728/suppl/GSM799728.CEL.gz
| | Sample_series_id | GSE32280
| | Sample_data_row_count | 54675
| | |
|
GSM799729 | GPL570 |
|
health control 3
|
health control 3
|
tissue: peripheral blood
cell type: lymphocytes
disease status: healthy control
|
CB2007224-C3.CEL
health control 3
|
| Sample_geo_accession | GSM799729
| | Sample_status | Public on Mar 21 2012
| | Sample_submission_date | Sep 21 2011
| | Sample_last_update_date | Mar 21 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | Venous peripheral blood from fasting patients and healthy controls were collected during 7am to 9am.Peripheral blood lymphocytes were separated by Ficoll gradient centrifugation using Ficoll-PlaqueTM Plus (GE, Sweden) according to the manufacturer's protocol.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from lymphocytes using Trizol reagent (Invitrogen) according to the manufacturer's protocol. RNA concentrations were determined by Nanodrop ND-1000 (Nanodrop Technologies, Wilmington, DE). RNA quality was assessed on an Agilent 2100 Bioanalyzer
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Total RNA were amplified, labeled and purified by using GeneChip 3’IVT Express Kit (Cat#901229, Affymetrix, Santa Clara, CA, US) followed the manufacturer’s instructions to obtain biotin labeled cRNA.
| | Sample_hyb_protocol | Array hybridization and wash was performed using GeneChip® Hybridization, Wash and Stain Kit (Cat#900720, Affymetrix, Santa Clara, CA, US)in Hybridization Oven 645 (Cat#00-0331-220V, Affymetrix, Santa Clara, CA, US)and Fluidics Station 450 (Cat#00-0079, Affymetrix, Santa Clara, CA, US) followed the manufacturer’s instructions.
| | Sample_scan_protocol | Slides were scanned by GeneChip® Scanner 3000 (Cat#00-00212, Affymetrix, Santa Clara, CA, US) and Command Console Software 3.1 (Affymetrix, Santa Clara, CA, US) with default settings.
| | Sample_data_processing | Raw data were normalized by RMA method, Gene Spring Software 11.0 (Agilent technologies, Santa Clara, CA, US). The values were log2 transformed.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Zezhi,,Li
| | Sample_contact_email | lizezhi1981@yahoo.cn
| | Sample_contact_phone | +86 13564648631
| | Sample_contact_department | Division of Mood Disorders
| | Sample_contact_institute | Shanghai Mental Health Center, Shanghai Jiao Tong University School of Medicine, Shanghai, China
| | Sample_contact_address | 600 South Wan Ping Road Shanghai 200030, China
| | Sample_contact_city | Shanghai
| | Sample_contact_zip/postal_code | 200030
| | Sample_contact_country | China
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM799nnn/GSM799729/suppl/GSM799729.CEL.gz
| | Sample_series_id | GSE32280
| | Sample_data_row_count | 54675
| | |
|
GSM799730 | GPL570 |
|
health control 4
|
health control 4
|
tissue: peripheral blood
cell type: lymphocytes
disease status: healthy control
|
CB2007224-C4.CEL
health control 4
|
| Sample_geo_accession | GSM799730
| | Sample_status | Public on Mar 21 2012
| | Sample_submission_date | Sep 21 2011
| | Sample_last_update_date | Mar 21 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | Venous peripheral blood from fasting patients and healthy controls were collected during 7am to 9am.Peripheral blood lymphocytes were separated by Ficoll gradient centrifugation using Ficoll-PlaqueTM Plus (GE, Sweden) according to the manufacturer's protocol.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from lymphocytes using Trizol reagent (Invitrogen) according to the manufacturer's protocol. RNA concentrations were determined by Nanodrop ND-1000 (Nanodrop Technologies, Wilmington, DE). RNA quality was assessed on an Agilent 2100 Bioanalyzer
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Total RNA were amplified, labeled and purified by using GeneChip 3’IVT Express Kit (Cat#901229, Affymetrix, Santa Clara, CA, US) followed the manufacturer’s instructions to obtain biotin labeled cRNA.
| | Sample_hyb_protocol | Array hybridization and wash was performed using GeneChip® Hybridization, Wash and Stain Kit (Cat#900720, Affymetrix, Santa Clara, CA, US)in Hybridization Oven 645 (Cat#00-0331-220V, Affymetrix, Santa Clara, CA, US)and Fluidics Station 450 (Cat#00-0079, Affymetrix, Santa Clara, CA, US) followed the manufacturer’s instructions.
| | Sample_scan_protocol | Slides were scanned by GeneChip® Scanner 3000 (Cat#00-00212, Affymetrix, Santa Clara, CA, US) and Command Console Software 3.1 (Affymetrix, Santa Clara, CA, US) with default settings.
| | Sample_data_processing | Raw data were normalized by RMA method, Gene Spring Software 11.0 (Agilent technologies, Santa Clara, CA, US). The values were log2 transformed.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Zezhi,,Li
| | Sample_contact_email | lizezhi1981@yahoo.cn
| | Sample_contact_phone | +86 13564648631
| | Sample_contact_department | Division of Mood Disorders
| | Sample_contact_institute | Shanghai Mental Health Center, Shanghai Jiao Tong University School of Medicine, Shanghai, China
| | Sample_contact_address | 600 South Wan Ping Road Shanghai 200030, China
| | Sample_contact_city | Shanghai
| | Sample_contact_zip/postal_code | 200030
| | Sample_contact_country | China
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM799nnn/GSM799730/suppl/GSM799730.CEL.gz
| | Sample_series_id | GSE32280
| | Sample_data_row_count | 54675
| | |
|
GSM799731 | GPL570 |
|
health control 5
|
health control 5
|
tissue: peripheral blood
cell type: lymphocytes
disease status: healthy control
|
CB2007224-C5.CEL
health control 5
|
| Sample_geo_accession | GSM799731
| | Sample_status | Public on Mar 21 2012
| | Sample_submission_date | Sep 21 2011
| | Sample_last_update_date | Mar 21 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | Venous peripheral blood from fasting patients and healthy controls were collected during 7am to 9am.Peripheral blood lymphocytes were separated by Ficoll gradient centrifugation using Ficoll-PlaqueTM Plus (GE, Sweden) according to the manufacturer's protocol.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from lymphocytes using Trizol reagent (Invitrogen) according to the manufacturer's protocol. RNA concentrations were determined by Nanodrop ND-1000 (Nanodrop Technologies, Wilmington, DE). RNA quality was assessed on an Agilent 2100 Bioanalyzer
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Total RNA were amplified, labeled and purified by using GeneChip 3’IVT Express Kit (Cat#901229, Affymetrix, Santa Clara, CA, US) followed the manufacturer’s instructions to obtain biotin labeled cRNA.
| | Sample_hyb_protocol | Array hybridization and wash was performed using GeneChip® Hybridization, Wash and Stain Kit (Cat#900720, Affymetrix, Santa Clara, CA, US)in Hybridization Oven 645 (Cat#00-0331-220V, Affymetrix, Santa Clara, CA, US)and Fluidics Station 450 (Cat#00-0079, Affymetrix, Santa Clara, CA, US) followed the manufacturer’s instructions.
| | Sample_scan_protocol | Slides were scanned by GeneChip® Scanner 3000 (Cat#00-00212, Affymetrix, Santa Clara, CA, US) and Command Console Software 3.1 (Affymetrix, Santa Clara, CA, US) with default settings.
| | Sample_data_processing | Raw data were normalized by RMA method, Gene Spring Software 11.0 (Agilent technologies, Santa Clara, CA, US). The values were log2 transformed.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Zezhi,,Li
| | Sample_contact_email | lizezhi1981@yahoo.cn
| | Sample_contact_phone | +86 13564648631
| | Sample_contact_department | Division of Mood Disorders
| | Sample_contact_institute | Shanghai Mental Health Center, Shanghai Jiao Tong University School of Medicine, Shanghai, China
| | Sample_contact_address | 600 South Wan Ping Road Shanghai 200030, China
| | Sample_contact_city | Shanghai
| | Sample_contact_zip/postal_code | 200030
| | Sample_contact_country | China
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM799nnn/GSM799731/suppl/GSM799731.CEL.gz
| | Sample_series_id | GSE32280
| | Sample_data_row_count | 54675
| | |
|
GSM799732 | GPL570 |
|
health control 6
|
health control 6
|
tissue: peripheral blood
cell type: lymphocytes
disease status: healthy control
|
CB2007224-C6.CEL
health control 6
|
| Sample_geo_accession | GSM799732
| | Sample_status | Public on Mar 21 2012
| | Sample_submission_date | Sep 21 2011
| | Sample_last_update_date | Mar 21 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | Venous peripheral blood from fasting patients and healthy controls were collected during 7am to 9am.Peripheral blood lymphocytes were separated by Ficoll gradient centrifugation using Ficoll-PlaqueTM Plus (GE, Sweden) according to the manufacturer's protocol.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from lymphocytes using Trizol reagent (Invitrogen) according to the manufacturer's protocol. RNA concentrations were determined by Nanodrop ND-1000 (Nanodrop Technologies, Wilmington, DE). RNA quality was assessed on an Agilent 2100 Bioanalyzer
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Total RNA were amplified, labeled and purified by using GeneChip 3’IVT Express Kit (Cat#901229, Affymetrix, Santa Clara, CA, US) followed the manufacturer’s instructions to obtain biotin labeled cRNA.
| | Sample_hyb_protocol | Array hybridization and wash was performed using GeneChip® Hybridization, Wash and Stain Kit (Cat#900720, Affymetrix, Santa Clara, CA, US)in Hybridization Oven 645 (Cat#00-0331-220V, Affymetrix, Santa Clara, CA, US)and Fluidics Station 450 (Cat#00-0079, Affymetrix, Santa Clara, CA, US) followed the manufacturer’s instructions.
| | Sample_scan_protocol | Slides were scanned by GeneChip® Scanner 3000 (Cat#00-00212, Affymetrix, Santa Clara, CA, US) and Command Console Software 3.1 (Affymetrix, Santa Clara, CA, US) with default settings.
| | Sample_data_processing | Raw data were normalized by RMA method, Gene Spring Software 11.0 (Agilent technologies, Santa Clara, CA, US). The values were log2 transformed.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Zezhi,,Li
| | Sample_contact_email | lizezhi1981@yahoo.cn
| | Sample_contact_phone | +86 13564648631
| | Sample_contact_department | Division of Mood Disorders
| | Sample_contact_institute | Shanghai Mental Health Center, Shanghai Jiao Tong University School of Medicine, Shanghai, China
| | Sample_contact_address | 600 South Wan Ping Road Shanghai 200030, China
| | Sample_contact_city | Shanghai
| | Sample_contact_zip/postal_code | 200030
| | Sample_contact_country | China
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM799nnn/GSM799732/suppl/GSM799732.CEL.gz
| | Sample_series_id | GSE32280
| | Sample_data_row_count | 54675
| | |
|
GSM799733 | GPL570 |
|
health control 7
|
health control 7
|
tissue: peripheral blood
cell type: lymphocytes
disease status: healthy control
|
CB2007224-C7.CEL
health control 7
|
| Sample_geo_accession | GSM799733
| | Sample_status | Public on Mar 21 2012
| | Sample_submission_date | Sep 21 2011
| | Sample_last_update_date | Mar 21 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | Venous peripheral blood from fasting patients and healthy controls were collected during 7am to 9am.Peripheral blood lymphocytes were separated by Ficoll gradient centrifugation using Ficoll-PlaqueTM Plus (GE, Sweden) according to the manufacturer's protocol.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from lymphocytes using Trizol reagent (Invitrogen) according to the manufacturer's protocol. RNA concentrations were determined by Nanodrop ND-1000 (Nanodrop Technologies, Wilmington, DE). RNA quality was assessed on an Agilent 2100 Bioanalyzer
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Total RNA were amplified, labeled and purified by using GeneChip 3’IVT Express Kit (Cat#901229, Affymetrix, Santa Clara, CA, US) followed the manufacturer’s instructions to obtain biotin labeled cRNA.
| | Sample_hyb_protocol | Array hybridization and wash was performed using GeneChip® Hybridization, Wash and Stain Kit (Cat#900720, Affymetrix, Santa Clara, CA, US)in Hybridization Oven 645 (Cat#00-0331-220V, Affymetrix, Santa Clara, CA, US)and Fluidics Station 450 (Cat#00-0079, Affymetrix, Santa Clara, CA, US) followed the manufacturer’s instructions.
| | Sample_scan_protocol | Slides were scanned by GeneChip® Scanner 3000 (Cat#00-00212, Affymetrix, Santa Clara, CA, US) and Command Console Software 3.1 (Affymetrix, Santa Clara, CA, US) with default settings.
| | Sample_data_processing | Raw data were normalized by RMA method, Gene Spring Software 11.0 (Agilent technologies, Santa Clara, CA, US). The values were log2 transformed.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Zezhi,,Li
| | Sample_contact_email | lizezhi1981@yahoo.cn
| | Sample_contact_phone | +86 13564648631
| | Sample_contact_department | Division of Mood Disorders
| | Sample_contact_institute | Shanghai Mental Health Center, Shanghai Jiao Tong University School of Medicine, Shanghai, China
| | Sample_contact_address | 600 South Wan Ping Road Shanghai 200030, China
| | Sample_contact_city | Shanghai
| | Sample_contact_zip/postal_code | 200030
| | Sample_contact_country | China
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM799nnn/GSM799733/suppl/GSM799733.CEL.gz
| | Sample_series_id | GSE32280
| | Sample_data_row_count | 54675
| | |
|
GSM799734 | GPL570 |
|
health control 8
|
health control 8
|
tissue: peripheral blood
cell type: lymphocytes
disease status: healthy control
|
CB2007224-C8.CEL
health control 8
|
| Sample_geo_accession | GSM799734
| | Sample_status | Public on Mar 21 2012
| | Sample_submission_date | Sep 21 2011
| | Sample_last_update_date | Mar 21 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | Venous peripheral blood from fasting patients and healthy controls were collected during 7am to 9am.Peripheral blood lymphocytes were separated by Ficoll gradient centrifugation using Ficoll-PlaqueTM Plus (GE, Sweden) according to the manufacturer's protocol.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from lymphocytes using Trizol reagent (Invitrogen) according to the manufacturer's protocol. RNA concentrations were determined by Nanodrop ND-1000 (Nanodrop Technologies, Wilmington, DE). RNA quality was assessed on an Agilent 2100 Bioanalyzer
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Total RNA were amplified, labeled and purified by using GeneChip 3’IVT Express Kit (Cat#901229, Affymetrix, Santa Clara, CA, US) followed the manufacturer’s instructions to obtain biotin labeled cRNA.
| | Sample_hyb_protocol | Array hybridization and wash was performed using GeneChip® Hybridization, Wash and Stain Kit (Cat#900720, Affymetrix, Santa Clara, CA, US)in Hybridization Oven 645 (Cat#00-0331-220V, Affymetrix, Santa Clara, CA, US)and Fluidics Station 450 (Cat#00-0079, Affymetrix, Santa Clara, CA, US) followed the manufacturer’s instructions.
| | Sample_scan_protocol | Slides were scanned by GeneChip® Scanner 3000 (Cat#00-00212, Affymetrix, Santa Clara, CA, US) and Command Console Software 3.1 (Affymetrix, Santa Clara, CA, US) with default settings.
| | Sample_data_processing | Raw data were normalized by RMA method, Gene Spring Software 11.0 (Agilent technologies, Santa Clara, CA, US). The values were log2 transformed.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Zezhi,,Li
| | Sample_contact_email | lizezhi1981@yahoo.cn
| | Sample_contact_phone | +86 13564648631
| | Sample_contact_department | Division of Mood Disorders
| | Sample_contact_institute | Shanghai Mental Health Center, Shanghai Jiao Tong University School of Medicine, Shanghai, China
| | Sample_contact_address | 600 South Wan Ping Road Shanghai 200030, China
| | Sample_contact_city | Shanghai
| | Sample_contact_zip/postal_code | 200030
| | Sample_contact_country | China
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM799nnn/GSM799734/suppl/GSM799734.CEL.gz
| | Sample_series_id | GSE32280
| | Sample_data_row_count | 54675
| | |
|
GSM799735 | GPL570 |
|
SSD patient 10 before treatment
|
SSD patient 10 before treatment
|
tissue: peripheral blood
cell type: lymphocytes
disease status: SSD patient
treatment: before treatment
|
CB2007224-D10A.CEL
MDD patient 10 before treatment with venlafaxine
|
| Sample_geo_accession | GSM799735
| | Sample_status | Public on Mar 21 2012
| | Sample_submission_date | Sep 21 2011
| | Sample_last_update_date | Mar 21 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | Venous peripheral blood from fasting patients and healthy controls were collected during 7am to 9am.Peripheral blood lymphocytes were separated by Ficoll gradient centrifugation using Ficoll-PlaqueTM Plus (GE, Sweden) according to the manufacturer's protocol.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from lymphocytes using Trizol reagent (Invitrogen) according to the manufacturer's protocol. RNA concentrations were determined by Nanodrop ND-1000 (Nanodrop Technologies, Wilmington, DE). RNA quality was assessed on an Agilent 2100 Bioanalyzer
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Total RNA were amplified, labeled and purified by using GeneChip 3’IVT Express Kit (Cat#901229, Affymetrix, Santa Clara, CA, US) followed the manufacturer’s instructions to obtain biotin labeled cRNA.
| | Sample_hyb_protocol | Array hybridization and wash was performed using GeneChip® Hybridization, Wash and Stain Kit (Cat#900720, Affymetrix, Santa Clara, CA, US)in Hybridization Oven 645 (Cat#00-0331-220V, Affymetrix, Santa Clara, CA, US)and Fluidics Station 450 (Cat#00-0079, Affymetrix, Santa Clara, CA, US) followed the manufacturer’s instructions.
| | Sample_scan_protocol | Slides were scanned by GeneChip® Scanner 3000 (Cat#00-00212, Affymetrix, Santa Clara, CA, US) and Command Console Software 3.1 (Affymetrix, Santa Clara, CA, US) with default settings.
| | Sample_data_processing | Raw data were normalized by RMA method, Gene Spring Software 11.0 (Agilent technologies, Santa Clara, CA, US). The values were log2 transformed.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Zezhi,,Li
| | Sample_contact_email | lizezhi1981@yahoo.cn
| | Sample_contact_phone | +86 13564648631
| | Sample_contact_department | Division of Mood Disorders
| | Sample_contact_institute | Shanghai Mental Health Center, Shanghai Jiao Tong University School of Medicine, Shanghai, China
| | Sample_contact_address | 600 South Wan Ping Road Shanghai 200030, China
| | Sample_contact_city | Shanghai
| | Sample_contact_zip/postal_code | 200030
| | Sample_contact_country | China
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM799nnn/GSM799735/suppl/GSM799735.CEL.gz
| | Sample_series_id | GSE32280
| | Sample_data_row_count | 54675
| | |
|
GSM799736 | GPL570 |
|
SSD patient 11 before treatment
|
SSD patient 11 before treatment
|
tissue: peripheral blood
cell type: lymphocytes
disease status: SSD patient
treatment: before treatment
|
CB2007224-D11A.CEL
MDD patient 11 before treatment with venlafaxine
|
| Sample_geo_accession | GSM799736
| | Sample_status | Public on Mar 21 2012
| | Sample_submission_date | Sep 21 2011
| | Sample_last_update_date | Mar 21 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | Venous peripheral blood from fasting patients and healthy controls were collected during 7am to 9am.Peripheral blood lymphocytes were separated by Ficoll gradient centrifugation using Ficoll-PlaqueTM Plus (GE, Sweden) according to the manufacturer's protocol.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from lymphocytes using Trizol reagent (Invitrogen) according to the manufacturer's protocol. RNA concentrations were determined by Nanodrop ND-1000 (Nanodrop Technologies, Wilmington, DE). RNA quality was assessed on an Agilent 2100 Bioanalyzer
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Total RNA were amplified, labeled and purified by using GeneChip 3’IVT Express Kit (Cat#901229, Affymetrix, Santa Clara, CA, US) followed the manufacturer’s instructions to obtain biotin labeled cRNA.
| | Sample_hyb_protocol | Array hybridization and wash was performed using GeneChip® Hybridization, Wash and Stain Kit (Cat#900720, Affymetrix, Santa Clara, CA, US)in Hybridization Oven 645 (Cat#00-0331-220V, Affymetrix, Santa Clara, CA, US)and Fluidics Station 450 (Cat#00-0079, Affymetrix, Santa Clara, CA, US) followed the manufacturer’s instructions.
| | Sample_scan_protocol | Slides were scanned by GeneChip® Scanner 3000 (Cat#00-00212, Affymetrix, Santa Clara, CA, US) and Command Console Software 3.1 (Affymetrix, Santa Clara, CA, US) with default settings.
| | Sample_data_processing | Raw data were normalized by RMA method, Gene Spring Software 11.0 (Agilent technologies, Santa Clara, CA, US). The values were log2 transformed.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Zezhi,,Li
| | Sample_contact_email | lizezhi1981@yahoo.cn
| | Sample_contact_phone | +86 13564648631
| | Sample_contact_department | Division of Mood Disorders
| | Sample_contact_institute | Shanghai Mental Health Center, Shanghai Jiao Tong University School of Medicine, Shanghai, China
| | Sample_contact_address | 600 South Wan Ping Road Shanghai 200030, China
| | Sample_contact_city | Shanghai
| | Sample_contact_zip/postal_code | 200030
| | Sample_contact_country | China
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM799nnn/GSM799736/suppl/GSM799736.CEL.gz
| | Sample_series_id | GSE32280
| | Sample_data_row_count | 54675
| | |
|
GSM799737 | GPL570 |
|
SSD patient 11 after treatment with Venlafaxine
|
SSD patient 11 after treatment with Venlafaxine
|
tissue: peripheral blood
cell type: lymphocytes
disease status: SSD patient
treatment: after treatment with Venlafaxine
|
CB2007224-D11B.CEL
MDD patient 11 after treatment with Venlafaxine
|
| Sample_geo_accession | GSM799737
| | Sample_status | Public on Mar 21 2012
| | Sample_submission_date | Sep 21 2011
| | Sample_last_update_date | Mar 21 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | Venous peripheral blood from fasting patients and healthy controls were collected during 7am to 9am.Peripheral blood lymphocytes were separated by Ficoll gradient centrifugation using Ficoll-PlaqueTM Plus (GE, Sweden) according to the manufacturer's protocol.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from lymphocytes using Trizol reagent (Invitrogen) according to the manufacturer's protocol. RNA concentrations were determined by Nanodrop ND-1000 (Nanodrop Technologies, Wilmington, DE). RNA quality was assessed on an Agilent 2100 Bioanalyzer
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Total RNA were amplified, labeled and purified by using GeneChip 3’IVT Express Kit (Cat#901229, Affymetrix, Santa Clara, CA, US) followed the manufacturer’s instructions to obtain biotin labeled cRNA.
| | Sample_hyb_protocol | Array hybridization and wash was performed using GeneChip® Hybridization, Wash and Stain Kit (Cat#900720, Affymetrix, Santa Clara, CA, US)in Hybridization Oven 645 (Cat#00-0331-220V, Affymetrix, Santa Clara, CA, US)and Fluidics Station 450 (Cat#00-0079, Affymetrix, Santa Clara, CA, US) followed the manufacturer’s instructions.
| | Sample_scan_protocol | Slides were scanned by GeneChip® Scanner 3000 (Cat#00-00212, Affymetrix, Santa Clara, CA, US) and Command Console Software 3.1 (Affymetrix, Santa Clara, CA, US) with default settings.
| | Sample_data_processing | Raw data were normalized by RMA method, Gene Spring Software 11.0 (Agilent technologies, Santa Clara, CA, US). The values were log2 transformed.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Zezhi,,Li
| | Sample_contact_email | lizezhi1981@yahoo.cn
| | Sample_contact_phone | +86 13564648631
| | Sample_contact_department | Division of Mood Disorders
| | Sample_contact_institute | Shanghai Mental Health Center, Shanghai Jiao Tong University School of Medicine, Shanghai, China
| | Sample_contact_address | 600 South Wan Ping Road Shanghai 200030, China
| | Sample_contact_city | Shanghai
| | Sample_contact_zip/postal_code | 200030
| | Sample_contact_country | China
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM799nnn/GSM799737/suppl/GSM799737.CEL.gz
| | Sample_series_id | GSE32280
| | Sample_data_row_count | 54675
| | |
|
GSM799738 | GPL570 |
|
MDD patient 13 before treatment
|
MDD patient 13 before treatment
|
tissue: peripheral blood
cell type: lymphocytes
disease status: MDD patient
treatment: before treatment
|
CB2007224-D13A.CEL
MDD patient 13 before treatment with venlafaxine
|
| Sample_geo_accession | GSM799738
| | Sample_status | Public on Mar 21 2012
| | Sample_submission_date | Sep 21 2011
| | Sample_last_update_date | Mar 21 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | Venous peripheral blood from fasting patients and healthy controls were collected during 7am to 9am.Peripheral blood lymphocytes were separated by Ficoll gradient centrifugation using Ficoll-PlaqueTM Plus (GE, Sweden) according to the manufacturer's protocol.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from lymphocytes using Trizol reagent (Invitrogen) according to the manufacturer's protocol. RNA concentrations were determined by Nanodrop ND-1000 (Nanodrop Technologies, Wilmington, DE). RNA quality was assessed on an Agilent 2100 Bioanalyzer
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Total RNA were amplified, labeled and purified by using GeneChip 3’IVT Express Kit (Cat#901229, Affymetrix, Santa Clara, CA, US) followed the manufacturer’s instructions to obtain biotin labeled cRNA.
| | Sample_hyb_protocol | Array hybridization and wash was performed using GeneChip® Hybridization, Wash and Stain Kit (Cat#900720, Affymetrix, Santa Clara, CA, US)in Hybridization Oven 645 (Cat#00-0331-220V, Affymetrix, Santa Clara, CA, US)and Fluidics Station 450 (Cat#00-0079, Affymetrix, Santa Clara, CA, US) followed the manufacturer’s instructions.
| | Sample_scan_protocol | Slides were scanned by GeneChip® Scanner 3000 (Cat#00-00212, Affymetrix, Santa Clara, CA, US) and Command Console Software 3.1 (Affymetrix, Santa Clara, CA, US) with default settings.
| | Sample_data_processing | Raw data were normalized by RMA method, Gene Spring Software 11.0 (Agilent technologies, Santa Clara, CA, US). The values were log2 transformed.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Zezhi,,Li
| | Sample_contact_email | lizezhi1981@yahoo.cn
| | Sample_contact_phone | +86 13564648631
| | Sample_contact_department | Division of Mood Disorders
| | Sample_contact_institute | Shanghai Mental Health Center, Shanghai Jiao Tong University School of Medicine, Shanghai, China
| | Sample_contact_address | 600 South Wan Ping Road Shanghai 200030, China
| | Sample_contact_city | Shanghai
| | Sample_contact_zip/postal_code | 200030
| | Sample_contact_country | China
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM799nnn/GSM799738/suppl/GSM799738.CEL.gz
| | Sample_series_id | GSE32280
| | Sample_data_row_count | 54675
| | |
|
GSM799739 | GPL570 |
|
MDD patient 13 after treatment with Venlafaxine
|
MDD patient 13 after treatment with Venlafaxine
|
tissue: peripheral blood
cell type: lymphocytes
disease status: MDD patient
treatment: after treatment with Venlafaxine
|
CB2007224-D13B.CEL
MDD patient 13 after treatment with Venlafaxine
|
| Sample_geo_accession | GSM799739
| | Sample_status | Public on Mar 21 2012
| | Sample_submission_date | Sep 21 2011
| | Sample_last_update_date | Mar 21 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | Venous peripheral blood from fasting patients and healthy controls were collected during 7am to 9am.Peripheral blood lymphocytes were separated by Ficoll gradient centrifugation using Ficoll-PlaqueTM Plus (GE, Sweden) according to the manufacturer's protocol.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from lymphocytes using Trizol reagent (Invitrogen) according to the manufacturer's protocol. RNA concentrations were determined by Nanodrop ND-1000 (Nanodrop Technologies, Wilmington, DE). RNA quality was assessed on an Agilent 2100 Bioanalyzer
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Total RNA were amplified, labeled and purified by using GeneChip 3’IVT Express Kit (Cat#901229, Affymetrix, Santa Clara, CA, US) followed the manufacturer’s instructions to obtain biotin labeled cRNA.
| | Sample_hyb_protocol | Array hybridization and wash was performed using GeneChip® Hybridization, Wash and Stain Kit (Cat#900720, Affymetrix, Santa Clara, CA, US)in Hybridization Oven 645 (Cat#00-0331-220V, Affymetrix, Santa Clara, CA, US)and Fluidics Station 450 (Cat#00-0079, Affymetrix, Santa Clara, CA, US) followed the manufacturer’s instructions.
| | Sample_scan_protocol | Slides were scanned by GeneChip® Scanner 3000 (Cat#00-00212, Affymetrix, Santa Clara, CA, US) and Command Console Software 3.1 (Affymetrix, Santa Clara, CA, US) with default settings.
| | Sample_data_processing | Raw data were normalized by RMA method, Gene Spring Software 11.0 (Agilent technologies, Santa Clara, CA, US). The values were log2 transformed.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Zezhi,,Li
| | Sample_contact_email | lizezhi1981@yahoo.cn
| | Sample_contact_phone | +86 13564648631
| | Sample_contact_department | Division of Mood Disorders
| | Sample_contact_institute | Shanghai Mental Health Center, Shanghai Jiao Tong University School of Medicine, Shanghai, China
| | Sample_contact_address | 600 South Wan Ping Road Shanghai 200030, China
| | Sample_contact_city | Shanghai
| | Sample_contact_zip/postal_code | 200030
| | Sample_contact_country | China
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM799nnn/GSM799739/suppl/GSM799739.CEL.gz
| | Sample_series_id | GSE32280
| | Sample_data_row_count | 54675
| | |
|
GSM799740 | GPL570 |
|
MDD patient 14 before treatment
|
MDD patient 14 before treatment
|
tissue: peripheral blood
cell type: lymphocytes
disease status: MDD patient
treatment: before treatment
|
CB2007224-D14A.CEL
MDD patient 14 before treatment with venlafaxine
|
| Sample_geo_accession | GSM799740
| | Sample_status | Public on Mar 21 2012
| | Sample_submission_date | Sep 21 2011
| | Sample_last_update_date | Mar 21 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | Venous peripheral blood from fasting patients and healthy controls were collected during 7am to 9am.Peripheral blood lymphocytes were separated by Ficoll gradient centrifugation using Ficoll-PlaqueTM Plus (GE, Sweden) according to the manufacturer's protocol.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from lymphocytes using Trizol reagent (Invitrogen) according to the manufacturer's protocol. RNA concentrations were determined by Nanodrop ND-1000 (Nanodrop Technologies, Wilmington, DE). RNA quality was assessed on an Agilent 2100 Bioanalyzer
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Total RNA were amplified, labeled and purified by using GeneChip 3’IVT Express Kit (Cat#901229, Affymetrix, Santa Clara, CA, US) followed the manufacturer’s instructions to obtain biotin labeled cRNA.
| | Sample_hyb_protocol | Array hybridization and wash was performed using GeneChip® Hybridization, Wash and Stain Kit (Cat#900720, Affymetrix, Santa Clara, CA, US)in Hybridization Oven 645 (Cat#00-0331-220V, Affymetrix, Santa Clara, CA, US)and Fluidics Station 450 (Cat#00-0079, Affymetrix, Santa Clara, CA, US) followed the manufacturer’s instructions.
| | Sample_scan_protocol | Slides were scanned by GeneChip® Scanner 3000 (Cat#00-00212, Affymetrix, Santa Clara, CA, US) and Command Console Software 3.1 (Affymetrix, Santa Clara, CA, US) with default settings.
| | Sample_data_processing | Raw data were normalized by RMA method, Gene Spring Software 11.0 (Agilent technologies, Santa Clara, CA, US). The values were log2 transformed.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Zezhi,,Li
| | Sample_contact_email | lizezhi1981@yahoo.cn
| | Sample_contact_phone | +86 13564648631
| | Sample_contact_department | Division of Mood Disorders
| | Sample_contact_institute | Shanghai Mental Health Center, Shanghai Jiao Tong University School of Medicine, Shanghai, China
| | Sample_contact_address | 600 South Wan Ping Road Shanghai 200030, China
| | Sample_contact_city | Shanghai
| | Sample_contact_zip/postal_code | 200030
| | Sample_contact_country | China
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM799nnn/GSM799740/suppl/GSM799740.CEL.gz
| | Sample_series_id | GSE32280
| | Sample_data_row_count | 54675
| | |
|
GSM799741 | GPL570 |
|
MDD patient 14 after treatment with Venlafaxine
|
MDD patient 14 after treatment with Venlafaxine
|
tissue: peripheral blood
cell type: lymphocytes
disease status: MDD patient
treatment: after treatment with Venlafaxine
|
CB2007224-D14B.CEL
MDD patient 14 after treatment with Venlafaxine
|
| Sample_geo_accession | GSM799741
| | Sample_status | Public on Mar 21 2012
| | Sample_submission_date | Sep 21 2011
| | Sample_last_update_date | Mar 21 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | Venous peripheral blood from fasting patients and healthy controls were collected during 7am to 9am.Peripheral blood lymphocytes were separated by Ficoll gradient centrifugation using Ficoll-PlaqueTM Plus (GE, Sweden) according to the manufacturer's protocol.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from lymphocytes using Trizol reagent (Invitrogen) according to the manufacturer's protocol. RNA concentrations were determined by Nanodrop ND-1000 (Nanodrop Technologies, Wilmington, DE). RNA quality was assessed on an Agilent 2100 Bioanalyzer
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Total RNA were amplified, labeled and purified by using GeneChip 3’IVT Express Kit (Cat#901229, Affymetrix, Santa Clara, CA, US) followed the manufacturer’s instructions to obtain biotin labeled cRNA.
| | Sample_hyb_protocol | Array hybridization and wash was performed using GeneChip® Hybridization, Wash and Stain Kit (Cat#900720, Affymetrix, Santa Clara, CA, US)in Hybridization Oven 645 (Cat#00-0331-220V, Affymetrix, Santa Clara, CA, US)and Fluidics Station 450 (Cat#00-0079, Affymetrix, Santa Clara, CA, US) followed the manufacturer’s instructions.
| | Sample_scan_protocol | Slides were scanned by GeneChip® Scanner 3000 (Cat#00-00212, Affymetrix, Santa Clara, CA, US) and Command Console Software 3.1 (Affymetrix, Santa Clara, CA, US) with default settings.
| | Sample_data_processing | Raw data were normalized by RMA method, Gene Spring Software 11.0 (Agilent technologies, Santa Clara, CA, US). The values were log2 transformed.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Zezhi,,Li
| | Sample_contact_email | lizezhi1981@yahoo.cn
| | Sample_contact_phone | +86 13564648631
| | Sample_contact_department | Division of Mood Disorders
| | Sample_contact_institute | Shanghai Mental Health Center, Shanghai Jiao Tong University School of Medicine, Shanghai, China
| | Sample_contact_address | 600 South Wan Ping Road Shanghai 200030, China
| | Sample_contact_city | Shanghai
| | Sample_contact_zip/postal_code | 200030
| | Sample_contact_country | China
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM799nnn/GSM799741/suppl/GSM799741.CEL.gz
| | Sample_series_id | GSE32280
| | Sample_data_row_count | 54675
| | |
|
GSM799742 | GPL570 |
|
SSD patient 15 before treatment
|
SSD patient 15 before treatment
|
tissue: peripheral blood
cell type: lymphocytes
disease status: SSD patient
treatment: before treatment
|
CB2007224-D15A.CEL
MDD patient 15 before treatment with venlafaxine
|
| Sample_geo_accession | GSM799742
| | Sample_status | Public on Mar 21 2012
| | Sample_submission_date | Sep 21 2011
| | Sample_last_update_date | Mar 21 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | Venous peripheral blood from fasting patients and healthy controls were collected during 7am to 9am.Peripheral blood lymphocytes were separated by Ficoll gradient centrifugation using Ficoll-PlaqueTM Plus (GE, Sweden) according to the manufacturer's protocol.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from lymphocytes using Trizol reagent (Invitrogen) according to the manufacturer's protocol. RNA concentrations were determined by Nanodrop ND-1000 (Nanodrop Technologies, Wilmington, DE). RNA quality was assessed on an Agilent 2100 Bioanalyzer
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Total RNA were amplified, labeled and purified by using GeneChip 3’IVT Express Kit (Cat#901229, Affymetrix, Santa Clara, CA, US) followed the manufacturer’s instructions to obtain biotin labeled cRNA.
| | Sample_hyb_protocol | Array hybridization and wash was performed using GeneChip® Hybridization, Wash and Stain Kit (Cat#900720, Affymetrix, Santa Clara, CA, US)in Hybridization Oven 645 (Cat#00-0331-220V, Affymetrix, Santa Clara, CA, US)and Fluidics Station 450 (Cat#00-0079, Affymetrix, Santa Clara, CA, US) followed the manufacturer’s instructions.
| | Sample_scan_protocol | Slides were scanned by GeneChip® Scanner 3000 (Cat#00-00212, Affymetrix, Santa Clara, CA, US) and Command Console Software 3.1 (Affymetrix, Santa Clara, CA, US) with default settings.
| | Sample_data_processing | Raw data were normalized by RMA method, Gene Spring Software 11.0 (Agilent technologies, Santa Clara, CA, US). The values were log2 transformed.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Zezhi,,Li
| | Sample_contact_email | lizezhi1981@yahoo.cn
| | Sample_contact_phone | +86 13564648631
| | Sample_contact_department | Division of Mood Disorders
| | Sample_contact_institute | Shanghai Mental Health Center, Shanghai Jiao Tong University School of Medicine, Shanghai, China
| | Sample_contact_address | 600 South Wan Ping Road Shanghai 200030, China
| | Sample_contact_city | Shanghai
| | Sample_contact_zip/postal_code | 200030
| | Sample_contact_country | China
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM799nnn/GSM799742/suppl/GSM799742.CEL.gz
| | Sample_series_id | GSE32280
| | Sample_data_row_count | 54675
| | |
|
GSM799743 | GPL570 |
|
MDD patient 19 before treatment
|
MDD patient 19 before treatment
|
tissue: peripheral blood
cell type: lymphocytes
disease status: MDD patient
treatment: before treatment
|
CB2007224-D19A.CEL
MDD patient 19 before treatment with venlafaxine
|
| Sample_geo_accession | GSM799743
| | Sample_status | Public on Mar 21 2012
| | Sample_submission_date | Sep 21 2011
| | Sample_last_update_date | Mar 21 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | Venous peripheral blood from fasting patients and healthy controls were collected during 7am to 9am.Peripheral blood lymphocytes were separated by Ficoll gradient centrifugation using Ficoll-PlaqueTM Plus (GE, Sweden) according to the manufacturer's protocol.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from lymphocytes using Trizol reagent (Invitrogen) according to the manufacturer's protocol. RNA concentrations were determined by Nanodrop ND-1000 (Nanodrop Technologies, Wilmington, DE). RNA quality was assessed on an Agilent 2100 Bioanalyzer
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Total RNA were amplified, labeled and purified by using GeneChip 3’IVT Express Kit (Cat#901229, Affymetrix, Santa Clara, CA, US) followed the manufacturer’s instructions to obtain biotin labeled cRNA.
| | Sample_hyb_protocol | Array hybridization and wash was performed using GeneChip® Hybridization, Wash and Stain Kit (Cat#900720, Affymetrix, Santa Clara, CA, US)in Hybridization Oven 645 (Cat#00-0331-220V, Affymetrix, Santa Clara, CA, US)and Fluidics Station 450 (Cat#00-0079, Affymetrix, Santa Clara, CA, US) followed the manufacturer’s instructions.
| | Sample_scan_protocol | Slides were scanned by GeneChip® Scanner 3000 (Cat#00-00212, Affymetrix, Santa Clara, CA, US) and Command Console Software 3.1 (Affymetrix, Santa Clara, CA, US) with default settings.
| | Sample_data_processing | Raw data were normalized by RMA method, Gene Spring Software 11.0 (Agilent technologies, Santa Clara, CA, US). The values were log2 transformed.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Zezhi,,Li
| | Sample_contact_email | lizezhi1981@yahoo.cn
| | Sample_contact_phone | +86 13564648631
| | Sample_contact_department | Division of Mood Disorders
| | Sample_contact_institute | Shanghai Mental Health Center, Shanghai Jiao Tong University School of Medicine, Shanghai, China
| | Sample_contact_address | 600 South Wan Ping Road Shanghai 200030, China
| | Sample_contact_city | Shanghai
| | Sample_contact_zip/postal_code | 200030
| | Sample_contact_country | China
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM799nnn/GSM799743/suppl/GSM799743.CEL.gz
| | Sample_series_id | GSE32280
| | Sample_data_row_count | 54675
| | |
|
GSM799744 | GPL570 |
|
MDD patient 19 after treatment with Venlafaxine
|
MDD patient 19 after treatment with Venlafaxine
|
tissue: peripheral blood
cell type: lymphocytes
disease status: MDD patient
treatment: after treatment with Venlafaxine
|
CB2007224-D19B.CEL
MDD patient 19 after treatment with Venlafaxine
|
| Sample_geo_accession | GSM799744
| | Sample_status | Public on Mar 21 2012
| | Sample_submission_date | Sep 21 2011
| | Sample_last_update_date | Mar 21 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | Venous peripheral blood from fasting patients and healthy controls were collected during 7am to 9am.Peripheral blood lymphocytes were separated by Ficoll gradient centrifugation using Ficoll-PlaqueTM Plus (GE, Sweden) according to the manufacturer's protocol.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from lymphocytes using Trizol reagent (Invitrogen) according to the manufacturer's protocol. RNA concentrations were determined by Nanodrop ND-1000 (Nanodrop Technologies, Wilmington, DE). RNA quality was assessed on an Agilent 2100 Bioanalyzer
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Total RNA were amplified, labeled and purified by using GeneChip 3’IVT Express Kit (Cat#901229, Affymetrix, Santa Clara, CA, US) followed the manufacturer’s instructions to obtain biotin labeled cRNA.
| | Sample_hyb_protocol | Array hybridization and wash was performed using GeneChip® Hybridization, Wash and Stain Kit (Cat#900720, Affymetrix, Santa Clara, CA, US)in Hybridization Oven 645 (Cat#00-0331-220V, Affymetrix, Santa Clara, CA, US)and Fluidics Station 450 (Cat#00-0079, Affymetrix, Santa Clara, CA, US) followed the manufacturer’s instructions.
| | Sample_scan_protocol | Slides were scanned by GeneChip® Scanner 3000 (Cat#00-00212, Affymetrix, Santa Clara, CA, US) and Command Console Software 3.1 (Affymetrix, Santa Clara, CA, US) with default settings.
| | Sample_data_processing | Raw data were normalized by RMA method, Gene Spring Software 11.0 (Agilent technologies, Santa Clara, CA, US). The values were log2 transformed.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Zezhi,,Li
| | Sample_contact_email | lizezhi1981@yahoo.cn
| | Sample_contact_phone | +86 13564648631
| | Sample_contact_department | Division of Mood Disorders
| | Sample_contact_institute | Shanghai Mental Health Center, Shanghai Jiao Tong University School of Medicine, Shanghai, China
| | Sample_contact_address | 600 South Wan Ping Road Shanghai 200030, China
| | Sample_contact_city | Shanghai
| | Sample_contact_zip/postal_code | 200030
| | Sample_contact_country | China
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM799nnn/GSM799744/suppl/GSM799744.CEL.gz
| | Sample_series_id | GSE32280
| | Sample_data_row_count | 54675
| | |
|
GSM799745 | GPL570 |
|
MDD patient 1 after treatment with Venlafaxine
|
MDD patient 1 after treatment with Venlafaxine
|
tissue: peripheral blood
cell type: lymphocytes
disease status: MDD patient
treatment: after treatment with Venlafaxine
|
CB2007224-D1B.CEL
MDD patient 1 after treatment with Venlafaxine
|
| Sample_geo_accession | GSM799745
| | Sample_status | Public on Mar 21 2012
| | Sample_submission_date | Sep 21 2011
| | Sample_last_update_date | Mar 21 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | Venous peripheral blood from fasting patients and healthy controls were collected during 7am to 9am.Peripheral blood lymphocytes were separated by Ficoll gradient centrifugation using Ficoll-PlaqueTM Plus (GE, Sweden) according to the manufacturer's protocol.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from lymphocytes using Trizol reagent (Invitrogen) according to the manufacturer's protocol. RNA concentrations were determined by Nanodrop ND-1000 (Nanodrop Technologies, Wilmington, DE). RNA quality was assessed on an Agilent 2100 Bioanalyzer
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Total RNA were amplified, labeled and purified by using GeneChip 3’IVT Express Kit (Cat#901229, Affymetrix, Santa Clara, CA, US) followed the manufacturer’s instructions to obtain biotin labeled cRNA.
| | Sample_hyb_protocol | Array hybridization and wash was performed using GeneChip® Hybridization, Wash and Stain Kit (Cat#900720, Affymetrix, Santa Clara, CA, US)in Hybridization Oven 645 (Cat#00-0331-220V, Affymetrix, Santa Clara, CA, US)and Fluidics Station 450 (Cat#00-0079, Affymetrix, Santa Clara, CA, US) followed the manufacturer’s instructions.
| | Sample_scan_protocol | Slides were scanned by GeneChip® Scanner 3000 (Cat#00-00212, Affymetrix, Santa Clara, CA, US) and Command Console Software 3.1 (Affymetrix, Santa Clara, CA, US) with default settings.
| | Sample_data_processing | Raw data were normalized by RMA method, Gene Spring Software 11.0 (Agilent technologies, Santa Clara, CA, US). The values were log2 transformed.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Zezhi,,Li
| | Sample_contact_email | lizezhi1981@yahoo.cn
| | Sample_contact_phone | +86 13564648631
| | Sample_contact_department | Division of Mood Disorders
| | Sample_contact_institute | Shanghai Mental Health Center, Shanghai Jiao Tong University School of Medicine, Shanghai, China
| | Sample_contact_address | 600 South Wan Ping Road Shanghai 200030, China
| | Sample_contact_city | Shanghai
| | Sample_contact_zip/postal_code | 200030
| | Sample_contact_country | China
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM799nnn/GSM799745/suppl/GSM799745.CEL.gz
| | Sample_series_id | GSE32280
| | Sample_data_row_count | 54675
| | |
|
GSM799746 | GPL570 |
|
SSD patient 21 before treatment
|
SSD patient 21 before treatment
|
tissue: peripheral blood
cell type: lymphocytes
disease status: SSD patient
treatment: before treatment
|
CB2007224-D21A.CEL
MDD patient 21 before treatment with venlafaxine
|
| Sample_geo_accession | GSM799746
| | Sample_status | Public on Mar 21 2012
| | Sample_submission_date | Sep 21 2011
| | Sample_last_update_date | Mar 21 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | Venous peripheral blood from fasting patients and healthy controls were collected during 7am to 9am.Peripheral blood lymphocytes were separated by Ficoll gradient centrifugation using Ficoll-PlaqueTM Plus (GE, Sweden) according to the manufacturer's protocol.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from lymphocytes using Trizol reagent (Invitrogen) according to the manufacturer's protocol. RNA concentrations were determined by Nanodrop ND-1000 (Nanodrop Technologies, Wilmington, DE). RNA quality was assessed on an Agilent 2100 Bioanalyzer
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Total RNA were amplified, labeled and purified by using GeneChip 3’IVT Express Kit (Cat#901229, Affymetrix, Santa Clara, CA, US) followed the manufacturer’s instructions to obtain biotin labeled cRNA.
| | Sample_hyb_protocol | Array hybridization and wash was performed using GeneChip® Hybridization, Wash and Stain Kit (Cat#900720, Affymetrix, Santa Clara, CA, US)in Hybridization Oven 645 (Cat#00-0331-220V, Affymetrix, Santa Clara, CA, US)and Fluidics Station 450 (Cat#00-0079, Affymetrix, Santa Clara, CA, US) followed the manufacturer’s instructions.
| | Sample_scan_protocol | Slides were scanned by GeneChip® Scanner 3000 (Cat#00-00212, Affymetrix, Santa Clara, CA, US) and Command Console Software 3.1 (Affymetrix, Santa Clara, CA, US) with default settings.
| | Sample_data_processing | Raw data were normalized by RMA method, Gene Spring Software 11.0 (Agilent technologies, Santa Clara, CA, US). The values were log2 transformed.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Zezhi,,Li
| | Sample_contact_email | lizezhi1981@yahoo.cn
| | Sample_contact_phone | +86 13564648631
| | Sample_contact_department | Division of Mood Disorders
| | Sample_contact_institute | Shanghai Mental Health Center, Shanghai Jiao Tong University School of Medicine, Shanghai, China
| | Sample_contact_address | 600 South Wan Ping Road Shanghai 200030, China
| | Sample_contact_city | Shanghai
| | Sample_contact_zip/postal_code | 200030
| | Sample_contact_country | China
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM799nnn/GSM799746/suppl/GSM799746.CEL.gz
| | Sample_series_id | GSE32280
| | Sample_data_row_count | 54675
| | |
|
GSM799747 | GPL570 |
|
SSD patient 21 after treatment with Venlafaxine
|
SSD patient 21 after treatment with Venlafaxine
|
tissue: peripheral blood
cell type: lymphocytes
disease status: SSD patient
treatment: after treatment with Venlafaxine
|
CB2007224-D21B.CEL
MDD patient 21 after treatment with Venlafaxine
|
| Sample_geo_accession | GSM799747
| | Sample_status | Public on Mar 21 2012
| | Sample_submission_date | Sep 21 2011
| | Sample_last_update_date | Mar 21 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | Venous peripheral blood from fasting patients and healthy controls were collected during 7am to 9am.Peripheral blood lymphocytes were separated by Ficoll gradient centrifugation using Ficoll-PlaqueTM Plus (GE, Sweden) according to the manufacturer's protocol.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from lymphocytes using Trizol reagent (Invitrogen) according to the manufacturer's protocol. RNA concentrations were determined by Nanodrop ND-1000 (Nanodrop Technologies, Wilmington, DE). RNA quality was assessed on an Agilent 2100 Bioanalyzer
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Total RNA were amplified, labeled and purified by using GeneChip 3’IVT Express Kit (Cat#901229, Affymetrix, Santa Clara, CA, US) followed the manufacturer’s instructions to obtain biotin labeled cRNA.
| | Sample_hyb_protocol | Array hybridization and wash was performed using GeneChip® Hybridization, Wash and Stain Kit (Cat#900720, Affymetrix, Santa Clara, CA, US)in Hybridization Oven 645 (Cat#00-0331-220V, Affymetrix, Santa Clara, CA, US)and Fluidics Station 450 (Cat#00-0079, Affymetrix, Santa Clara, CA, US) followed the manufacturer’s instructions.
| | Sample_scan_protocol | Slides were scanned by GeneChip® Scanner 3000 (Cat#00-00212, Affymetrix, Santa Clara, CA, US) and Command Console Software 3.1 (Affymetrix, Santa Clara, CA, US) with default settings.
| | Sample_data_processing | Raw data were normalized by RMA method, Gene Spring Software 11.0 (Agilent technologies, Santa Clara, CA, US). The values were log2 transformed.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Zezhi,,Li
| | Sample_contact_email | lizezhi1981@yahoo.cn
| | Sample_contact_phone | +86 13564648631
| | Sample_contact_department | Division of Mood Disorders
| | Sample_contact_institute | Shanghai Mental Health Center, Shanghai Jiao Tong University School of Medicine, Shanghai, China
| | Sample_contact_address | 600 South Wan Ping Road Shanghai 200030, China
| | Sample_contact_city | Shanghai
| | Sample_contact_zip/postal_code | 200030
| | Sample_contact_country | China
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM799nnn/GSM799747/suppl/GSM799747.CEL.gz
| | Sample_series_id | GSE32280
| | Sample_data_row_count | 54675
| | |
|
GSM799748 | GPL570 |
|
SSD patient 22 before treatment
|
SSD patient 22 before treatment
|
tissue: peripheral blood
cell type: lymphocytes
disease status: SSD patient
treatment: before treatment
|
CB2007224-D22A.CEL
MDD patient 22 before treatment with venlafaxine
|
| Sample_geo_accession | GSM799748
| | Sample_status | Public on Mar 21 2012
| | Sample_submission_date | Sep 21 2011
| | Sample_last_update_date | Mar 21 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | Venous peripheral blood from fasting patients and healthy controls were collected during 7am to 9am.Peripheral blood lymphocytes were separated by Ficoll gradient centrifugation using Ficoll-PlaqueTM Plus (GE, Sweden) according to the manufacturer's protocol.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from lymphocytes using Trizol reagent (Invitrogen) according to the manufacturer's protocol. RNA concentrations were determined by Nanodrop ND-1000 (Nanodrop Technologies, Wilmington, DE). RNA quality was assessed on an Agilent 2100 Bioanalyzer
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Total RNA were amplified, labeled and purified by using GeneChip 3’IVT Express Kit (Cat#901229, Affymetrix, Santa Clara, CA, US) followed the manufacturer’s instructions to obtain biotin labeled cRNA.
| | Sample_hyb_protocol | Array hybridization and wash was performed using GeneChip® Hybridization, Wash and Stain Kit (Cat#900720, Affymetrix, Santa Clara, CA, US)in Hybridization Oven 645 (Cat#00-0331-220V, Affymetrix, Santa Clara, CA, US)and Fluidics Station 450 (Cat#00-0079, Affymetrix, Santa Clara, CA, US) followed the manufacturer’s instructions.
| | Sample_scan_protocol | Slides were scanned by GeneChip® Scanner 3000 (Cat#00-00212, Affymetrix, Santa Clara, CA, US) and Command Console Software 3.1 (Affymetrix, Santa Clara, CA, US) with default settings.
| | Sample_data_processing | Raw data were normalized by RMA method, Gene Spring Software 11.0 (Agilent technologies, Santa Clara, CA, US). The values were log2 transformed.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Zezhi,,Li
| | Sample_contact_email | lizezhi1981@yahoo.cn
| | Sample_contact_phone | +86 13564648631
| | Sample_contact_department | Division of Mood Disorders
| | Sample_contact_institute | Shanghai Mental Health Center, Shanghai Jiao Tong University School of Medicine, Shanghai, China
| | Sample_contact_address | 600 South Wan Ping Road Shanghai 200030, China
| | Sample_contact_city | Shanghai
| | Sample_contact_zip/postal_code | 200030
| | Sample_contact_country | China
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM799nnn/GSM799748/suppl/GSM799748.CEL.gz
| | Sample_series_id | GSE32280
| | Sample_data_row_count | 54675
| | |
|
GSM799749 | GPL570 |
|
SSD patient 22 after treatment with Venlafaxine
|
SSD patient 22 after treatment with Venlafaxine
|
tissue: peripheral blood
cell type: lymphocytes
disease status: SSD patient
treatment: after treatment with Venlafaxine
|
CB2007224-D22B.CEL
MDD patient 22 after treatment with Venlafaxine
|
| Sample_geo_accession | GSM799749
| | Sample_status | Public on Mar 21 2012
| | Sample_submission_date | Sep 21 2011
| | Sample_last_update_date | Mar 21 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | Venous peripheral blood from fasting patients and healthy controls were collected during 7am to 9am.Peripheral blood lymphocytes were separated by Ficoll gradient centrifugation using Ficoll-PlaqueTM Plus (GE, Sweden) according to the manufacturer's protocol.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from lymphocytes using Trizol reagent (Invitrogen) according to the manufacturer's protocol. RNA concentrations were determined by Nanodrop ND-1000 (Nanodrop Technologies, Wilmington, DE). RNA quality was assessed on an Agilent 2100 Bioanalyzer
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Total RNA were amplified, labeled and purified by using GeneChip 3’IVT Express Kit (Cat#901229, Affymetrix, Santa Clara, CA, US) followed the manufacturer’s instructions to obtain biotin labeled cRNA.
| | Sample_hyb_protocol | Array hybridization and wash was performed using GeneChip® Hybridization, Wash and Stain Kit (Cat#900720, Affymetrix, Santa Clara, CA, US)in Hybridization Oven 645 (Cat#00-0331-220V, Affymetrix, Santa Clara, CA, US)and Fluidics Station 450 (Cat#00-0079, Affymetrix, Santa Clara, CA, US) followed the manufacturer’s instructions.
| | Sample_scan_protocol | Slides were scanned by GeneChip® Scanner 3000 (Cat#00-00212, Affymetrix, Santa Clara, CA, US) and Command Console Software 3.1 (Affymetrix, Santa Clara, CA, US) with default settings.
| | Sample_data_processing | Raw data were normalized by RMA method, Gene Spring Software 11.0 (Agilent technologies, Santa Clara, CA, US). The values were log2 transformed.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Zezhi,,Li
| | Sample_contact_email | lizezhi1981@yahoo.cn
| | Sample_contact_phone | +86 13564648631
| | Sample_contact_department | Division of Mood Disorders
| | Sample_contact_institute | Shanghai Mental Health Center, Shanghai Jiao Tong University School of Medicine, Shanghai, China
| | Sample_contact_address | 600 South Wan Ping Road Shanghai 200030, China
| | Sample_contact_city | Shanghai
| | Sample_contact_zip/postal_code | 200030
| | Sample_contact_country | China
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM799nnn/GSM799749/suppl/GSM799749.CEL.gz
| | Sample_series_id | GSE32280
| | Sample_data_row_count | 54675
| | |
|
GSM799750 | GPL570 |
|
SSD patient 24 before treatment
|
SSD patient 24 before treatment
|
tissue: peripheral blood
cell type: lymphocytes
disease status: SSD patient
treatment: before treatment
|
CB2007224-D24A.CEL
MDD patient 24 before treatment with venlafaxine
|
| Sample_geo_accession | GSM799750
| | Sample_status | Public on Mar 21 2012
| | Sample_submission_date | Sep 21 2011
| | Sample_last_update_date | Mar 21 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | Venous peripheral blood from fasting patients and healthy controls were collected during 7am to 9am.Peripheral blood lymphocytes were separated by Ficoll gradient centrifugation using Ficoll-PlaqueTM Plus (GE, Sweden) according to the manufacturer's protocol.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from lymphocytes using Trizol reagent (Invitrogen) according to the manufacturer's protocol. RNA concentrations were determined by Nanodrop ND-1000 (Nanodrop Technologies, Wilmington, DE). RNA quality was assessed on an Agilent 2100 Bioanalyzer
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Total RNA were amplified, labeled and purified by using GeneChip 3’IVT Express Kit (Cat#901229, Affymetrix, Santa Clara, CA, US) followed the manufacturer’s instructions to obtain biotin labeled cRNA.
| | Sample_hyb_protocol | Array hybridization and wash was performed using GeneChip® Hybridization, Wash and Stain Kit (Cat#900720, Affymetrix, Santa Clara, CA, US)in Hybridization Oven 645 (Cat#00-0331-220V, Affymetrix, Santa Clara, CA, US)and Fluidics Station 450 (Cat#00-0079, Affymetrix, Santa Clara, CA, US) followed the manufacturer’s instructions.
| | Sample_scan_protocol | Slides were scanned by GeneChip® Scanner 3000 (Cat#00-00212, Affymetrix, Santa Clara, CA, US) and Command Console Software 3.1 (Affymetrix, Santa Clara, CA, US) with default settings.
| | Sample_data_processing | Raw data were normalized by RMA method, Gene Spring Software 11.0 (Agilent technologies, Santa Clara, CA, US). The values were log2 transformed.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Zezhi,,Li
| | Sample_contact_email | lizezhi1981@yahoo.cn
| | Sample_contact_phone | +86 13564648631
| | Sample_contact_department | Division of Mood Disorders
| | Sample_contact_institute | Shanghai Mental Health Center, Shanghai Jiao Tong University School of Medicine, Shanghai, China
| | Sample_contact_address | 600 South Wan Ping Road Shanghai 200030, China
| | Sample_contact_city | Shanghai
| | Sample_contact_zip/postal_code | 200030
| | Sample_contact_country | China
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM799nnn/GSM799750/suppl/GSM799750.CEL.gz
| | Sample_series_id | GSE32280
| | Sample_data_row_count | 54675
| | |
|
GSM799751 | GPL570 |
|
SSD patient 29 after treatment with Venlafaxine
|
SSD patient 29 after treatment with Venlafaxine
|
tissue: peripheral blood
cell type: lymphocytes
disease status: SSD patient
treatment: after treatment with Venlafaxine
|
CB2007224-D29-2.CEL
MDD patient 29 after treatment with Venlafaxine
|
| Sample_geo_accession | GSM799751
| | Sample_status | Public on Mar 21 2012
| | Sample_submission_date | Sep 21 2011
| | Sample_last_update_date | Mar 21 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | Venous peripheral blood from fasting patients and healthy controls were collected during 7am to 9am.Peripheral blood lymphocytes were separated by Ficoll gradient centrifugation using Ficoll-PlaqueTM Plus (GE, Sweden) according to the manufacturer's protocol.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from lymphocytes using Trizol reagent (Invitrogen) according to the manufacturer's protocol. RNA concentrations were determined by Nanodrop ND-1000 (Nanodrop Technologies, Wilmington, DE). RNA quality was assessed on an Agilent 2100 Bioanalyzer
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Total RNA were amplified, labeled and purified by using GeneChip 3’IVT Express Kit (Cat#901229, Affymetrix, Santa Clara, CA, US) followed the manufacturer’s instructions to obtain biotin labeled cRNA.
| | Sample_hyb_protocol | Array hybridization and wash was performed using GeneChip® Hybridization, Wash and Stain Kit (Cat#900720, Affymetrix, Santa Clara, CA, US)in Hybridization Oven 645 (Cat#00-0331-220V, Affymetrix, Santa Clara, CA, US)and Fluidics Station 450 (Cat#00-0079, Affymetrix, Santa Clara, CA, US) followed the manufacturer’s instructions.
| | Sample_scan_protocol | Slides were scanned by GeneChip® Scanner 3000 (Cat#00-00212, Affymetrix, Santa Clara, CA, US) and Command Console Software 3.1 (Affymetrix, Santa Clara, CA, US) with default settings.
| | Sample_data_processing | Raw data were normalized by RMA method, Gene Spring Software 11.0 (Agilent technologies, Santa Clara, CA, US). The values were log2 transformed.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Zezhi,,Li
| | Sample_contact_email | lizezhi1981@yahoo.cn
| | Sample_contact_phone | +86 13564648631
| | Sample_contact_department | Division of Mood Disorders
| | Sample_contact_institute | Shanghai Mental Health Center, Shanghai Jiao Tong University School of Medicine, Shanghai, China
| | Sample_contact_address | 600 South Wan Ping Road Shanghai 200030, China
| | Sample_contact_city | Shanghai
| | Sample_contact_zip/postal_code | 200030
| | Sample_contact_country | China
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM799nnn/GSM799751/suppl/GSM799751.CEL.gz
| | Sample_series_id | GSE32280
| | Sample_data_row_count | 54675
| | |
|
GSM799752 | GPL570 |
|
SSD patient 29 before treatment
|
SSD patient 29 before treatment
|
tissue: peripheral blood
cell type: lymphocytes
disease status: SSD patient
treatment: before treatment
|
CB2007224-D29A.CEL
MDD patient 29 before treatment with venlafaxine
|
| Sample_geo_accession | GSM799752
| | Sample_status | Public on Mar 21 2012
| | Sample_submission_date | Sep 21 2011
| | Sample_last_update_date | Mar 21 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | Venous peripheral blood from fasting patients and healthy controls were collected during 7am to 9am.Peripheral blood lymphocytes were separated by Ficoll gradient centrifugation using Ficoll-PlaqueTM Plus (GE, Sweden) according to the manufacturer's protocol.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from lymphocytes using Trizol reagent (Invitrogen) according to the manufacturer's protocol. RNA concentrations were determined by Nanodrop ND-1000 (Nanodrop Technologies, Wilmington, DE). RNA quality was assessed on an Agilent 2100 Bioanalyzer
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Total RNA were amplified, labeled and purified by using GeneChip 3’IVT Express Kit (Cat#901229, Affymetrix, Santa Clara, CA, US) followed the manufacturer’s instructions to obtain biotin labeled cRNA.
| | Sample_hyb_protocol | Array hybridization and wash was performed using GeneChip® Hybridization, Wash and Stain Kit (Cat#900720, Affymetrix, Santa Clara, CA, US)in Hybridization Oven 645 (Cat#00-0331-220V, Affymetrix, Santa Clara, CA, US)and Fluidics Station 450 (Cat#00-0079, Affymetrix, Santa Clara, CA, US) followed the manufacturer’s instructions.
| | Sample_scan_protocol | Slides were scanned by GeneChip® Scanner 3000 (Cat#00-00212, Affymetrix, Santa Clara, CA, US) and Command Console Software 3.1 (Affymetrix, Santa Clara, CA, US) with default settings.
| | Sample_data_processing | Raw data were normalized by RMA method, Gene Spring Software 11.0 (Agilent technologies, Santa Clara, CA, US). The values were log2 transformed.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Zezhi,,Li
| | Sample_contact_email | lizezhi1981@yahoo.cn
| | Sample_contact_phone | +86 13564648631
| | Sample_contact_department | Division of Mood Disorders
| | Sample_contact_institute | Shanghai Mental Health Center, Shanghai Jiao Tong University School of Medicine, Shanghai, China
| | Sample_contact_address | 600 South Wan Ping Road Shanghai 200030, China
| | Sample_contact_city | Shanghai
| | Sample_contact_zip/postal_code | 200030
| | Sample_contact_country | China
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM799nnn/GSM799752/suppl/GSM799752.CEL.gz
| | Sample_series_id | GSE32280
| | Sample_data_row_count | 54675
| | |
|
GSM799753 | GPL570 |
|
MDD patient 2 after treatment with Venlafaxine
|
MDD patient 2 after treatment with Venlafaxine
|
tissue: peripheral blood
cell type: lymphocytes
disease status: MDD patient
treatment: after treatment with Venlafaxine
|
CB2007224-D2B.CEL
MDD patient 2 after treatment with Venlafaxine
|
| Sample_geo_accession | GSM799753
| | Sample_status | Public on Mar 21 2012
| | Sample_submission_date | Sep 21 2011
| | Sample_last_update_date | Mar 21 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | Venous peripheral blood from fasting patients and healthy controls were collected during 7am to 9am.Peripheral blood lymphocytes were separated by Ficoll gradient centrifugation using Ficoll-PlaqueTM Plus (GE, Sweden) according to the manufacturer's protocol.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from lymphocytes using Trizol reagent (Invitrogen) according to the manufacturer's protocol. RNA concentrations were determined by Nanodrop ND-1000 (Nanodrop Technologies, Wilmington, DE). RNA quality was assessed on an Agilent 2100 Bioanalyzer
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Total RNA were amplified, labeled and purified by using GeneChip 3’IVT Express Kit (Cat#901229, Affymetrix, Santa Clara, CA, US) followed the manufacturer’s instructions to obtain biotin labeled cRNA.
| | Sample_hyb_protocol | Array hybridization and wash was performed using GeneChip® Hybridization, Wash and Stain Kit (Cat#900720, Affymetrix, Santa Clara, CA, US)in Hybridization Oven 645 (Cat#00-0331-220V, Affymetrix, Santa Clara, CA, US)and Fluidics Station 450 (Cat#00-0079, Affymetrix, Santa Clara, CA, US) followed the manufacturer’s instructions.
| | Sample_scan_protocol | Slides were scanned by GeneChip® Scanner 3000 (Cat#00-00212, Affymetrix, Santa Clara, CA, US) and Command Console Software 3.1 (Affymetrix, Santa Clara, CA, US) with default settings.
| | Sample_data_processing | Raw data were normalized by RMA method, Gene Spring Software 11.0 (Agilent technologies, Santa Clara, CA, US). The values were log2 transformed.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Zezhi,,Li
| | Sample_contact_email | lizezhi1981@yahoo.cn
| | Sample_contact_phone | +86 13564648631
| | Sample_contact_department | Division of Mood Disorders
| | Sample_contact_institute | Shanghai Mental Health Center, Shanghai Jiao Tong University School of Medicine, Shanghai, China
| | Sample_contact_address | 600 South Wan Ping Road Shanghai 200030, China
| | Sample_contact_city | Shanghai
| | Sample_contact_zip/postal_code | 200030
| | Sample_contact_country | China
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM799nnn/GSM799753/suppl/GSM799753.CEL.gz
| | Sample_series_id | GSE32280
| | Sample_data_row_count | 54675
| | |
|
GSM799754 | GPL570 |
|
SSD patient 30 before treatment
|
SSD patient 30 before treatment
|
tissue: peripheral blood
cell type: lymphocytes
disease status: SSD patient
treatment: before treatment
|
CB2007224-D30-1.CEL
MDD patient 30 before treatment with venlafaxine
|
| Sample_geo_accession | GSM799754
| | Sample_status | Public on Mar 21 2012
| | Sample_submission_date | Sep 21 2011
| | Sample_last_update_date | Mar 21 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | Venous peripheral blood from fasting patients and healthy controls were collected during 7am to 9am.Peripheral blood lymphocytes were separated by Ficoll gradient centrifugation using Ficoll-PlaqueTM Plus (GE, Sweden) according to the manufacturer's protocol.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from lymphocytes using Trizol reagent (Invitrogen) according to the manufacturer's protocol. RNA concentrations were determined by Nanodrop ND-1000 (Nanodrop Technologies, Wilmington, DE). RNA quality was assessed on an Agilent 2100 Bioanalyzer
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Total RNA were amplified, labeled and purified by using GeneChip 3’IVT Express Kit (Cat#901229, Affymetrix, Santa Clara, CA, US) followed the manufacturer’s instructions to obtain biotin labeled cRNA.
| | Sample_hyb_protocol | Array hybridization and wash was performed using GeneChip® Hybridization, Wash and Stain Kit (Cat#900720, Affymetrix, Santa Clara, CA, US)in Hybridization Oven 645 (Cat#00-0331-220V, Affymetrix, Santa Clara, CA, US)and Fluidics Station 450 (Cat#00-0079, Affymetrix, Santa Clara, CA, US) followed the manufacturer’s instructions.
| | Sample_scan_protocol | Slides were scanned by GeneChip® Scanner 3000 (Cat#00-00212, Affymetrix, Santa Clara, CA, US) and Command Console Software 3.1 (Affymetrix, Santa Clara, CA, US) with default settings.
| | Sample_data_processing | Raw data were normalized by RMA method, Gene Spring Software 11.0 (Agilent technologies, Santa Clara, CA, US). The values were log2 transformed.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Zezhi,,Li
| | Sample_contact_email | lizezhi1981@yahoo.cn
| | Sample_contact_phone | +86 13564648631
| | Sample_contact_department | Division of Mood Disorders
| | Sample_contact_institute | Shanghai Mental Health Center, Shanghai Jiao Tong University School of Medicine, Shanghai, China
| | Sample_contact_address | 600 South Wan Ping Road Shanghai 200030, China
| | Sample_contact_city | Shanghai
| | Sample_contact_zip/postal_code | 200030
| | Sample_contact_country | China
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM799nnn/GSM799754/suppl/GSM799754.CEL.gz
| | Sample_series_id | GSE32280
| | Sample_data_row_count | 54675
| | |
|
GSM799755 | GPL570 |
|
SSD patient 30 after treatment with Venlafaxine
|
SSD patient 30 after treatment with Venlafaxine
|
tissue: peripheral blood
cell type: lymphocytes
disease status: SSD patient
treatment: after treatment with Venlafaxine
|
CB2007224-D30-2.CEL
MDD patient 30 after treatment with Venlafaxine
|
| Sample_geo_accession | GSM799755
| | Sample_status | Public on Mar 21 2012
| | Sample_submission_date | Sep 21 2011
| | Sample_last_update_date | Mar 21 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | Venous peripheral blood from fasting patients and healthy controls were collected during 7am to 9am.Peripheral blood lymphocytes were separated by Ficoll gradient centrifugation using Ficoll-PlaqueTM Plus (GE, Sweden) according to the manufacturer's protocol.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from lymphocytes using Trizol reagent (Invitrogen) according to the manufacturer's protocol. RNA concentrations were determined by Nanodrop ND-1000 (Nanodrop Technologies, Wilmington, DE). RNA quality was assessed on an Agilent 2100 Bioanalyzer
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Total RNA were amplified, labeled and purified by using GeneChip 3’IVT Express Kit (Cat#901229, Affymetrix, Santa Clara, CA, US) followed the manufacturer’s instructions to obtain biotin labeled cRNA.
| | Sample_hyb_protocol | Array hybridization and wash was performed using GeneChip® Hybridization, Wash and Stain Kit (Cat#900720, Affymetrix, Santa Clara, CA, US)in Hybridization Oven 645 (Cat#00-0331-220V, Affymetrix, Santa Clara, CA, US)and Fluidics Station 450 (Cat#00-0079, Affymetrix, Santa Clara, CA, US) followed the manufacturer’s instructions.
| | Sample_scan_protocol | Slides were scanned by GeneChip® Scanner 3000 (Cat#00-00212, Affymetrix, Santa Clara, CA, US) and Command Console Software 3.1 (Affymetrix, Santa Clara, CA, US) with default settings.
| | Sample_data_processing | Raw data were normalized by RMA method, Gene Spring Software 11.0 (Agilent technologies, Santa Clara, CA, US). The values were log2 transformed.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Zezhi,,Li
| | Sample_contact_email | lizezhi1981@yahoo.cn
| | Sample_contact_phone | +86 13564648631
| | Sample_contact_department | Division of Mood Disorders
| | Sample_contact_institute | Shanghai Mental Health Center, Shanghai Jiao Tong University School of Medicine, Shanghai, China
| | Sample_contact_address | 600 South Wan Ping Road Shanghai 200030, China
| | Sample_contact_city | Shanghai
| | Sample_contact_zip/postal_code | 200030
| | Sample_contact_country | China
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM799nnn/GSM799755/suppl/GSM799755.CEL.gz
| | Sample_series_id | GSE32280
| | Sample_data_row_count | 54675
| | |
|
GSM799756 | GPL570 |
|
MDD patient 3 after treatment with Venlafaxine
|
MDD patient 3 after treatment with Venlafaxine
|
tissue: peripheral blood
cell type: lymphocytes
disease status: MDD patient
treatment: after treatment with Venlafaxine
|
CB2007224-D3B.CEL
MDD patient 3 after treatment with Venlafaxine
|
| Sample_geo_accession | GSM799756
| | Sample_status | Public on Mar 21 2012
| | Sample_submission_date | Sep 21 2011
| | Sample_last_update_date | Mar 21 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | Venous peripheral blood from fasting patients and healthy controls were collected during 7am to 9am.Peripheral blood lymphocytes were separated by Ficoll gradient centrifugation using Ficoll-PlaqueTM Plus (GE, Sweden) according to the manufacturer's protocol.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from lymphocytes using Trizol reagent (Invitrogen) according to the manufacturer's protocol. RNA concentrations were determined by Nanodrop ND-1000 (Nanodrop Technologies, Wilmington, DE). RNA quality was assessed on an Agilent 2100 Bioanalyzer
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Total RNA were amplified, labeled and purified by using GeneChip 3’IVT Express Kit (Cat#901229, Affymetrix, Santa Clara, CA, US) followed the manufacturer’s instructions to obtain biotin labeled cRNA.
| | Sample_hyb_protocol | Array hybridization and wash was performed using GeneChip® Hybridization, Wash and Stain Kit (Cat#900720, Affymetrix, Santa Clara, CA, US)in Hybridization Oven 645 (Cat#00-0331-220V, Affymetrix, Santa Clara, CA, US)and Fluidics Station 450 (Cat#00-0079, Affymetrix, Santa Clara, CA, US) followed the manufacturer’s instructions.
| | Sample_scan_protocol | Slides were scanned by GeneChip® Scanner 3000 (Cat#00-00212, Affymetrix, Santa Clara, CA, US) and Command Console Software 3.1 (Affymetrix, Santa Clara, CA, US) with default settings.
| | Sample_data_processing | Raw data were normalized by RMA method, Gene Spring Software 11.0 (Agilent technologies, Santa Clara, CA, US). The values were log2 transformed.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Zezhi,,Li
| | Sample_contact_email | lizezhi1981@yahoo.cn
| | Sample_contact_phone | +86 13564648631
| | Sample_contact_department | Division of Mood Disorders
| | Sample_contact_institute | Shanghai Mental Health Center, Shanghai Jiao Tong University School of Medicine, Shanghai, China
| | Sample_contact_address | 600 South Wan Ping Road Shanghai 200030, China
| | Sample_contact_city | Shanghai
| | Sample_contact_zip/postal_code | 200030
| | Sample_contact_country | China
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM799nnn/GSM799756/suppl/GSM799756.CEL.gz
| | Sample_series_id | GSE32280
| | Sample_data_row_count | 54675
| | |
|
GSM799757 | GPL570 |
|
MDD patient 4 after treatment with Venlafaxine
|
MDD patient 4 after treatment with Venlafaxine
|
tissue: peripheral blood
cell type: lymphocytes
disease status: MDD patient
treatment: after treatment with Venlafaxine
|
CB2007224-D4B.CEL
MDD patient 4 after treatment with Venlafaxine
|
| Sample_geo_accession | GSM799757
| | Sample_status | Public on Mar 21 2012
| | Sample_submission_date | Sep 21 2011
| | Sample_last_update_date | Mar 21 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | Venous peripheral blood from fasting patients and healthy controls were collected during 7am to 9am.Peripheral blood lymphocytes were separated by Ficoll gradient centrifugation using Ficoll-PlaqueTM Plus (GE, Sweden) according to the manufacturer's protocol.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from lymphocytes using Trizol reagent (Invitrogen) according to the manufacturer's protocol. RNA concentrations were determined by Nanodrop ND-1000 (Nanodrop Technologies, Wilmington, DE). RNA quality was assessed on an Agilent 2100 Bioanalyzer
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Total RNA were amplified, labeled and purified by using GeneChip 3’IVT Express Kit (Cat#901229, Affymetrix, Santa Clara, CA, US) followed the manufacturer’s instructions to obtain biotin labeled cRNA.
| | Sample_hyb_protocol | Array hybridization and wash was performed using GeneChip® Hybridization, Wash and Stain Kit (Cat#900720, Affymetrix, Santa Clara, CA, US)in Hybridization Oven 645 (Cat#00-0331-220V, Affymetrix, Santa Clara, CA, US)and Fluidics Station 450 (Cat#00-0079, Affymetrix, Santa Clara, CA, US) followed the manufacturer’s instructions.
| | Sample_scan_protocol | Slides were scanned by GeneChip® Scanner 3000 (Cat#00-00212, Affymetrix, Santa Clara, CA, US) and Command Console Software 3.1 (Affymetrix, Santa Clara, CA, US) with default settings.
| | Sample_data_processing | Raw data were normalized by RMA method, Gene Spring Software 11.0 (Agilent technologies, Santa Clara, CA, US). The values were log2 transformed.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Zezhi,,Li
| | Sample_contact_email | lizezhi1981@yahoo.cn
| | Sample_contact_phone | +86 13564648631
| | Sample_contact_department | Division of Mood Disorders
| | Sample_contact_institute | Shanghai Mental Health Center, Shanghai Jiao Tong University School of Medicine, Shanghai, China
| | Sample_contact_address | 600 South Wan Ping Road Shanghai 200030, China
| | Sample_contact_city | Shanghai
| | Sample_contact_zip/postal_code | 200030
| | Sample_contact_country | China
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM799nnn/GSM799757/suppl/GSM799757.CEL.gz
| | Sample_series_id | GSE32280
| | Sample_data_row_count | 54675
| | |
|
GSM799758 | GPL570 |
|
MDD patient 5 after treatment with Venlafaxine
|
MDD patient 5 after treatment with Venlafaxine
|
tissue: peripheral blood
cell type: lymphocytes
disease status: MDD patient
treatment: after treatment with Venlafaxine
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CB2007224-D5B.CEL
MDD patient 5 after treatment with Venlafaxine
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| Sample_geo_accession | GSM799758
| | Sample_status | Public on Mar 21 2012
| | Sample_submission_date | Sep 21 2011
| | Sample_last_update_date | Mar 21 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | Venous peripheral blood from fasting patients and healthy controls were collected during 7am to 9am.Peripheral blood lymphocytes were separated by Ficoll gradient centrifugation using Ficoll-PlaqueTM Plus (GE, Sweden) according to the manufacturer's protocol.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from lymphocytes using Trizol reagent (Invitrogen) according to the manufacturer's protocol. RNA concentrations were determined by Nanodrop ND-1000 (Nanodrop Technologies, Wilmington, DE). RNA quality was assessed on an Agilent 2100 Bioanalyzer
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Total RNA were amplified, labeled and purified by using GeneChip 3’IVT Express Kit (Cat#901229, Affymetrix, Santa Clara, CA, US) followed the manufacturer’s instructions to obtain biotin labeled cRNA.
| | Sample_hyb_protocol | Array hybridization and wash was performed using GeneChip® Hybridization, Wash and Stain Kit (Cat#900720, Affymetrix, Santa Clara, CA, US)in Hybridization Oven 645 (Cat#00-0331-220V, Affymetrix, Santa Clara, CA, US)and Fluidics Station 450 (Cat#00-0079, Affymetrix, Santa Clara, CA, US) followed the manufacturer’s instructions.
| | Sample_scan_protocol | Slides were scanned by GeneChip® Scanner 3000 (Cat#00-00212, Affymetrix, Santa Clara, CA, US) and Command Console Software 3.1 (Affymetrix, Santa Clara, CA, US) with default settings.
| | Sample_data_processing | Raw data were normalized by RMA method, Gene Spring Software 11.0 (Agilent technologies, Santa Clara, CA, US). The values were log2 transformed.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Zezhi,,Li
| | Sample_contact_email | lizezhi1981@yahoo.cn
| | Sample_contact_phone | +86 13564648631
| | Sample_contact_department | Division of Mood Disorders
| | Sample_contact_institute | Shanghai Mental Health Center, Shanghai Jiao Tong University School of Medicine, Shanghai, China
| | Sample_contact_address | 600 South Wan Ping Road Shanghai 200030, China
| | Sample_contact_city | Shanghai
| | Sample_contact_zip/postal_code | 200030
| | Sample_contact_country | China
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM799nnn/GSM799758/suppl/GSM799758.CEL.gz
| | Sample_series_id | GSE32280
| | Sample_data_row_count | 54675
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