Search results for the GEO ID: GSE32676  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM811004 | GPL570 |
|
human PDAC 1 (mRNA)
|
human pancreatic tumor
|
tissue: pancreas
disease status: pancreatic cancer
ajcc stage: 2B
grade: 2
tumor content: 90
|
gene expression of human PDAC
|
| Sample_geo_accession | GSM811004
| | Sample_status | Public on Oct 08 2011
| | Sample_submission_date | Oct 06 2011
| | Sample_last_update_date | Oct 08 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Roche's MagNA Pure Compact Nucleic Acid Purification System was used for automated RNA isolation.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | As recommended by manufacturer
| | Sample_hyb_protocol | As recommended by manufacturer
| | Sample_scan_protocol | GeneChip Scanner 3000 7G was used for scanning. Affymetrix GeneChip Command Console software (AGCC 3.2) was used for image processing
| | Sample_data_processing | Data was normalized by GCRMA (R/Bioconductor). The presence/abscence calls was then determined by using “Presence-Absence calls with Negative Probesets” (panp) package (Bioconductor) with default parameters
| | Sample_platform_id | GPL570
| | Sample_contact_name | Linh,My,Tran
| | Sample_contact_email | linhtran@ucla.edu
| | Sample_contact_laboratory | Hong Wu
| | Sample_contact_department | 1Department of Molecular and Medical Pharmacology
| | Sample_contact_institute | University of Los Angeles
| | Sample_contact_address | 650 CE Young Drive South
| | Sample_contact_city | Los Angeles
| | Sample_contact_state | California
| | Sample_contact_zip/postal_code | 90095
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM811nnn/GSM811004/suppl/GSM811004_14000A.CEL.gz
| | Sample_series_id | GSE32676
| | Sample_series_id | GSE32688
| | Sample_data_row_count | 54675
| | |
|
GSM811005 | GPL570 |
|
human PDAC 2 (mRNA)
|
human pancreatic tumor
|
tissue: pancreas
disease status: pancreatic cancer
ajcc stage: 1B
grade: 2
tumor content: 90
|
gene expression of human PDAC
|
| Sample_geo_accession | GSM811005
| | Sample_status | Public on Oct 08 2011
| | Sample_submission_date | Oct 06 2011
| | Sample_last_update_date | Oct 08 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Roche's MagNA Pure Compact Nucleic Acid Purification System was used for automated RNA isolation.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | As recommended by manufacturer
| | Sample_hyb_protocol | As recommended by manufacturer
| | Sample_scan_protocol | GeneChip Scanner 3000 7G was used for scanning. Affymetrix GeneChip Command Console software (AGCC 3.2) was used for image processing
| | Sample_data_processing | Data was normalized by GCRMA (R/Bioconductor). The presence/abscence calls was then determined by using “Presence-Absence calls with Negative Probesets” (panp) package (Bioconductor) with default parameters
| | Sample_platform_id | GPL570
| | Sample_contact_name | Linh,My,Tran
| | Sample_contact_email | linhtran@ucla.edu
| | Sample_contact_laboratory | Hong Wu
| | Sample_contact_department | 1Department of Molecular and Medical Pharmacology
| | Sample_contact_institute | University of Los Angeles
| | Sample_contact_address | 650 CE Young Drive South
| | Sample_contact_city | Los Angeles
| | Sample_contact_state | California
| | Sample_contact_zip/postal_code | 90095
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM811nnn/GSM811005/suppl/GSM811005_26T.CEL.gz
| | Sample_series_id | GSE32676
| | Sample_series_id | GSE32688
| | Sample_data_row_count | 54675
| | |
|
GSM811006 | GPL570 |
|
human PDAC 3 (mRNA)
|
human pancreatic tumor
|
tissue: pancreas
disease status: pancreatic cancer
ajcc stage: 2A
grade: 1
tumor content: 80
|
gene expression of human PDAC
|
| Sample_geo_accession | GSM811006
| | Sample_status | Public on Oct 08 2011
| | Sample_submission_date | Oct 06 2011
| | Sample_last_update_date | Oct 08 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Roche's MagNA Pure Compact Nucleic Acid Purification System was used for automated RNA isolation.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | As recommended by manufacturer
| | Sample_hyb_protocol | As recommended by manufacturer
| | Sample_scan_protocol | GeneChip Scanner 3000 7G was used for scanning. Affymetrix GeneChip Command Console software (AGCC 3.2) was used for image processing
| | Sample_data_processing | Data was normalized by GCRMA (R/Bioconductor). The presence/abscence calls was then determined by using “Presence-Absence calls with Negative Probesets” (panp) package (Bioconductor) with default parameters
| | Sample_platform_id | GPL570
| | Sample_contact_name | Linh,My,Tran
| | Sample_contact_email | linhtran@ucla.edu
| | Sample_contact_laboratory | Hong Wu
| | Sample_contact_department | 1Department of Molecular and Medical Pharmacology
| | Sample_contact_institute | University of Los Angeles
| | Sample_contact_address | 650 CE Young Drive South
| | Sample_contact_city | Los Angeles
| | Sample_contact_state | California
| | Sample_contact_zip/postal_code | 90095
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM811nnn/GSM811006/suppl/GSM811006_15T.CEL.gz
| | Sample_series_id | GSE32676
| | Sample_series_id | GSE32688
| | Sample_data_row_count | 54675
| | |
|
GSM811007 | GPL570 |
|
human PDAC 4 (mRNA)
|
human pancreatic tumor
|
tissue: pancreas
disease status: pancreatic cancer
ajcc stage: 2B
grade: 2
tumor content: 80
|
gene expression of human PDAC
|
| Sample_geo_accession | GSM811007
| | Sample_status | Public on Oct 08 2011
| | Sample_submission_date | Oct 06 2011
| | Sample_last_update_date | Oct 08 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Roche's MagNA Pure Compact Nucleic Acid Purification System was used for automated RNA isolation.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | As recommended by manufacturer
| | Sample_hyb_protocol | As recommended by manufacturer
| | Sample_scan_protocol | GeneChip Scanner 3000 7G was used for scanning. Affymetrix GeneChip Command Console software (AGCC 3.2) was used for image processing
| | Sample_data_processing | Data was normalized by GCRMA (R/Bioconductor). The presence/abscence calls was then determined by using “Presence-Absence calls with Negative Probesets” (panp) package (Bioconductor) with default parameters
| | Sample_platform_id | GPL570
| | Sample_contact_name | Linh,My,Tran
| | Sample_contact_email | linhtran@ucla.edu
| | Sample_contact_laboratory | Hong Wu
| | Sample_contact_department | 1Department of Molecular and Medical Pharmacology
| | Sample_contact_institute | University of Los Angeles
| | Sample_contact_address | 650 CE Young Drive South
| | Sample_contact_city | Los Angeles
| | Sample_contact_state | California
| | Sample_contact_zip/postal_code | 90095
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM811nnn/GSM811007/suppl/GSM811007_32T.CEL.gz
| | Sample_series_id | GSE32676
| | Sample_series_id | GSE32688
| | Sample_data_row_count | 54675
| | |
|
GSM811008 | GPL570 |
|
human PDAC 5 (mRNA)
|
human pancreatic tumor
|
tissue: pancreas
disease status: pancreatic cancer
ajcc stage: 2B
grade: 2
tumor content: 80
|
gene expression of human PDAC
|
| Sample_geo_accession | GSM811008
| | Sample_status | Public on Oct 08 2011
| | Sample_submission_date | Oct 06 2011
| | Sample_last_update_date | Oct 08 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Roche's MagNA Pure Compact Nucleic Acid Purification System was used for automated RNA isolation.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | As recommended by manufacturer
| | Sample_hyb_protocol | As recommended by manufacturer
| | Sample_scan_protocol | GeneChip Scanner 3000 7G was used for scanning. Affymetrix GeneChip Command Console software (AGCC 3.2) was used for image processing
| | Sample_data_processing | Data was normalized by GCRMA (R/Bioconductor). The presence/abscence calls was then determined by using “Presence-Absence calls with Negative Probesets” (panp) package (Bioconductor) with default parameters
| | Sample_platform_id | GPL570
| | Sample_contact_name | Linh,My,Tran
| | Sample_contact_email | linhtran@ucla.edu
| | Sample_contact_laboratory | Hong Wu
| | Sample_contact_department | 1Department of Molecular and Medical Pharmacology
| | Sample_contact_institute | University of Los Angeles
| | Sample_contact_address | 650 CE Young Drive South
| | Sample_contact_city | Los Angeles
| | Sample_contact_state | California
| | Sample_contact_zip/postal_code | 90095
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM811nnn/GSM811008/suppl/GSM811008_33196A.CEL.gz
| | Sample_series_id | GSE32676
| | Sample_series_id | GSE32688
| | Sample_data_row_count | 54675
| | |
|
GSM811009 | GPL570 |
|
human PDAC 6 (mRNA)
|
human pancreatic tumor
|
tissue: pancreas
disease status: pancreatic cancer
ajcc stage: 2B
grade: 3
tumor content: 80
|
gene expression of human PDAC
|
| Sample_geo_accession | GSM811009
| | Sample_status | Public on Oct 08 2011
| | Sample_submission_date | Oct 06 2011
| | Sample_last_update_date | Oct 08 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Roche's MagNA Pure Compact Nucleic Acid Purification System was used for automated RNA isolation.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | As recommended by manufacturer
| | Sample_hyb_protocol | As recommended by manufacturer
| | Sample_scan_protocol | GeneChip Scanner 3000 7G was used for scanning. Affymetrix GeneChip Command Console software (AGCC 3.2) was used for image processing
| | Sample_data_processing | Data was normalized by GCRMA (R/Bioconductor). The presence/abscence calls was then determined by using “Presence-Absence calls with Negative Probesets” (panp) package (Bioconductor) with default parameters
| | Sample_platform_id | GPL570
| | Sample_contact_name | Linh,My,Tran
| | Sample_contact_email | linhtran@ucla.edu
| | Sample_contact_laboratory | Hong Wu
| | Sample_contact_department | 1Department of Molecular and Medical Pharmacology
| | Sample_contact_institute | University of Los Angeles
| | Sample_contact_address | 650 CE Young Drive South
| | Sample_contact_city | Los Angeles
| | Sample_contact_state | California
| | Sample_contact_zip/postal_code | 90095
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM811nnn/GSM811009/suppl/GSM811009_34831A.CEL.gz
| | Sample_series_id | GSE32676
| | Sample_series_id | GSE32688
| | Sample_data_row_count | 54675
| | |
|
GSM811010 | GPL570 |
|
human PDAC 7 (mRNA)
|
human pancreatic tumor
|
tissue: pancreas
disease status: pancreatic cancer
ajcc stage: 1B
grade: 2
tumor content: 75
|
gene expression of human PDAC
|
| Sample_geo_accession | GSM811010
| | Sample_status | Public on Oct 08 2011
| | Sample_submission_date | Oct 06 2011
| | Sample_last_update_date | Oct 08 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Roche's MagNA Pure Compact Nucleic Acid Purification System was used for automated RNA isolation.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | As recommended by manufacturer
| | Sample_hyb_protocol | As recommended by manufacturer
| | Sample_scan_protocol | GeneChip Scanner 3000 7G was used for scanning. Affymetrix GeneChip Command Console software (AGCC 3.2) was used for image processing
| | Sample_data_processing | Data was normalized by GCRMA (R/Bioconductor). The presence/abscence calls was then determined by using “Presence-Absence calls with Negative Probesets” (panp) package (Bioconductor) with default parameters
| | Sample_platform_id | GPL570
| | Sample_contact_name | Linh,My,Tran
| | Sample_contact_email | linhtran@ucla.edu
| | Sample_contact_laboratory | Hong Wu
| | Sample_contact_department | 1Department of Molecular and Medical Pharmacology
| | Sample_contact_institute | University of Los Angeles
| | Sample_contact_address | 650 CE Young Drive South
| | Sample_contact_city | Los Angeles
| | Sample_contact_state | California
| | Sample_contact_zip/postal_code | 90095
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM811nnn/GSM811010/suppl/GSM811010_17T.CEL.gz
| | Sample_series_id | GSE32676
| | Sample_series_id | GSE32688
| | Sample_data_row_count | 54675
| | |
|
GSM811011 | GPL570 |
|
human PDAC 8 (mRNA)
|
human pancreatic tumor
|
tissue: pancreas
disease status: pancreatic cancer
ajcc stage: 2B
grade: 3
tumor content: 75
|
gene expression of human PDAC
|
| Sample_geo_accession | GSM811011
| | Sample_status | Public on Oct 08 2011
| | Sample_submission_date | Oct 06 2011
| | Sample_last_update_date | Oct 08 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Roche's MagNA Pure Compact Nucleic Acid Purification System was used for automated RNA isolation.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | As recommended by manufacturer
| | Sample_hyb_protocol | As recommended by manufacturer
| | Sample_scan_protocol | GeneChip Scanner 3000 7G was used for scanning. Affymetrix GeneChip Command Console software (AGCC 3.2) was used for image processing
| | Sample_data_processing | Data was normalized by GCRMA (R/Bioconductor). The presence/abscence calls was then determined by using “Presence-Absence calls with Negative Probesets” (panp) package (Bioconductor) with default parameters
| | Sample_platform_id | GPL570
| | Sample_contact_name | Linh,My,Tran
| | Sample_contact_email | linhtran@ucla.edu
| | Sample_contact_laboratory | Hong Wu
| | Sample_contact_department | 1Department of Molecular and Medical Pharmacology
| | Sample_contact_institute | University of Los Angeles
| | Sample_contact_address | 650 CE Young Drive South
| | Sample_contact_city | Los Angeles
| | Sample_contact_state | California
| | Sample_contact_zip/postal_code | 90095
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM811nnn/GSM811011/suppl/GSM811011_30T.CEL.gz
| | Sample_series_id | GSE32676
| | Sample_series_id | GSE32688
| | Sample_data_row_count | 54675
| | |
|
GSM811012 | GPL570 |
|
human PDAC 9 (mRNA)
|
human pancreatic tumor
|
tissue: pancreas
disease status: pancreatic cancer
ajcc stage: 2B
grade: 3
tumor content: 75
|
gene expression of human PDAC
|
| Sample_geo_accession | GSM811012
| | Sample_status | Public on Oct 08 2011
| | Sample_submission_date | Oct 06 2011
| | Sample_last_update_date | Oct 08 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Roche's MagNA Pure Compact Nucleic Acid Purification System was used for automated RNA isolation.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | As recommended by manufacturer
| | Sample_hyb_protocol | As recommended by manufacturer
| | Sample_scan_protocol | GeneChip Scanner 3000 7G was used for scanning. Affymetrix GeneChip Command Console software (AGCC 3.2) was used for image processing
| | Sample_data_processing | Data was normalized by GCRMA (R/Bioconductor). The presence/abscence calls was then determined by using “Presence-Absence calls with Negative Probesets” (panp) package (Bioconductor) with default parameters
| | Sample_platform_id | GPL570
| | Sample_contact_name | Linh,My,Tran
| | Sample_contact_email | linhtran@ucla.edu
| | Sample_contact_laboratory | Hong Wu
| | Sample_contact_department | 1Department of Molecular and Medical Pharmacology
| | Sample_contact_institute | University of Los Angeles
| | Sample_contact_address | 650 CE Young Drive South
| | Sample_contact_city | Los Angeles
| | Sample_contact_state | California
| | Sample_contact_zip/postal_code | 90095
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM811nnn/GSM811012/suppl/GSM811012_33742A.CEL.gz
| | Sample_series_id | GSE32676
| | Sample_series_id | GSE32688
| | Sample_data_row_count | 54675
| | |
|
GSM811013 | GPL570 |
|
human PDAC 10 (mRNA)
|
human pancreatic tumor
|
tissue: pancreas
disease status: pancreatic cancer
ajcc stage: 2B
grade: 2
tumor content: 70
|
gene expression of human PDAC
|
| Sample_geo_accession | GSM811013
| | Sample_status | Public on Oct 08 2011
| | Sample_submission_date | Oct 06 2011
| | Sample_last_update_date | Oct 08 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Roche's MagNA Pure Compact Nucleic Acid Purification System was used for automated RNA isolation.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | As recommended by manufacturer
| | Sample_hyb_protocol | As recommended by manufacturer
| | Sample_scan_protocol | GeneChip Scanner 3000 7G was used for scanning. Affymetrix GeneChip Command Console software (AGCC 3.2) was used for image processing
| | Sample_data_processing | Data was normalized by GCRMA (R/Bioconductor). The presence/abscence calls was then determined by using “Presence-Absence calls with Negative Probesets” (panp) package (Bioconductor) with default parameters
| | Sample_platform_id | GPL570
| | Sample_contact_name | Linh,My,Tran
| | Sample_contact_email | linhtran@ucla.edu
| | Sample_contact_laboratory | Hong Wu
| | Sample_contact_department | 1Department of Molecular and Medical Pharmacology
| | Sample_contact_institute | University of Los Angeles
| | Sample_contact_address | 650 CE Young Drive South
| | Sample_contact_city | Los Angeles
| | Sample_contact_state | California
| | Sample_contact_zip/postal_code | 90095
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM811nnn/GSM811013/suppl/GSM811013_34755.CEL.gz
| | Sample_series_id | GSE32676
| | Sample_series_id | GSE32688
| | Sample_data_row_count | 54675
| | |
|
GSM811014 | GPL570 |
|
human PDAC 11 (mRNA)
|
human pancreatic tumor
|
tissue: pancreas
disease status: pancreatic cancer
ajcc stage: 2B
grade: 2
tumor content: 60
|
gene expression of human PDAC
|
| Sample_geo_accession | GSM811014
| | Sample_status | Public on Oct 08 2011
| | Sample_submission_date | Oct 06 2011
| | Sample_last_update_date | Oct 08 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Roche's MagNA Pure Compact Nucleic Acid Purification System was used for automated RNA isolation.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | As recommended by manufacturer
| | Sample_hyb_protocol | As recommended by manufacturer
| | Sample_scan_protocol | GeneChip Scanner 3000 7G was used for scanning. Affymetrix GeneChip Command Console software (AGCC 3.2) was used for image processing
| | Sample_data_processing | Data was normalized by GCRMA (R/Bioconductor). The presence/abscence calls was then determined by using “Presence-Absence calls with Negative Probesets” (panp) package (Bioconductor) with default parameters
| | Sample_platform_id | GPL570
| | Sample_contact_name | Linh,My,Tran
| | Sample_contact_email | linhtran@ucla.edu
| | Sample_contact_laboratory | Hong Wu
| | Sample_contact_department | 1Department of Molecular and Medical Pharmacology
| | Sample_contact_institute | University of Los Angeles
| | Sample_contact_address | 650 CE Young Drive South
| | Sample_contact_city | Los Angeles
| | Sample_contact_state | California
| | Sample_contact_zip/postal_code | 90095
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM811nnn/GSM811014/suppl/GSM811014_12868A.CEL.gz
| | Sample_series_id | GSE32676
| | Sample_series_id | GSE32688
| | Sample_data_row_count | 54675
| | |
|
GSM811015 | GPL570 |
|
human PDAC 12 (mRNA)
|
human pancreatic tumor
|
tissue: pancreas
disease status: pancreatic cancer
ajcc stage: 2A
grade: 2
tumor content: 60
|
gene expression of human PDAC
|
| Sample_geo_accession | GSM811015
| | Sample_status | Public on Oct 08 2011
| | Sample_submission_date | Oct 06 2011
| | Sample_last_update_date | Oct 08 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Roche's MagNA Pure Compact Nucleic Acid Purification System was used for automated RNA isolation.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | As recommended by manufacturer
| | Sample_hyb_protocol | As recommended by manufacturer
| | Sample_scan_protocol | GeneChip Scanner 3000 7G was used for scanning. Affymetrix GeneChip Command Console software (AGCC 3.2) was used for image processing
| | Sample_data_processing | Data was normalized by GCRMA (R/Bioconductor). The presence/abscence calls was then determined by using “Presence-Absence calls with Negative Probesets” (panp) package (Bioconductor) with default parameters
| | Sample_platform_id | GPL570
| | Sample_contact_name | Linh,My,Tran
| | Sample_contact_email | linhtran@ucla.edu
| | Sample_contact_laboratory | Hong Wu
| | Sample_contact_department | 1Department of Molecular and Medical Pharmacology
| | Sample_contact_institute | University of Los Angeles
| | Sample_contact_address | 650 CE Young Drive South
| | Sample_contact_city | Los Angeles
| | Sample_contact_state | California
| | Sample_contact_zip/postal_code | 90095
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM811nnn/GSM811015/suppl/GSM811015_14T.CEL.gz
| | Sample_series_id | GSE32676
| | Sample_series_id | GSE32688
| | Sample_data_row_count | 54675
| | |
|
GSM811016 | GPL570 |
|
human PDAC 13 (mRNA)
|
human pancreatic tumor
|
tissue: pancreas
disease status: pancreatic cancer
ajcc stage: 2B
grade: 3
tumor content: 60
|
gene expression of human PDAC
|
| Sample_geo_accession | GSM811016
| | Sample_status | Public on Oct 08 2011
| | Sample_submission_date | Oct 06 2011
| | Sample_last_update_date | Oct 08 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Roche's MagNA Pure Compact Nucleic Acid Purification System was used for automated RNA isolation.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | As recommended by manufacturer
| | Sample_hyb_protocol | As recommended by manufacturer
| | Sample_scan_protocol | GeneChip Scanner 3000 7G was used for scanning. Affymetrix GeneChip Command Console software (AGCC 3.2) was used for image processing
| | Sample_data_processing | Data was normalized by GCRMA (R/Bioconductor). The presence/abscence calls was then determined by using “Presence-Absence calls with Negative Probesets” (panp) package (Bioconductor) with default parameters
| | Sample_platform_id | GPL570
| | Sample_contact_name | Linh,My,Tran
| | Sample_contact_email | linhtran@ucla.edu
| | Sample_contact_laboratory | Hong Wu
| | Sample_contact_department | 1Department of Molecular and Medical Pharmacology
| | Sample_contact_institute | University of Los Angeles
| | Sample_contact_address | 650 CE Young Drive South
| | Sample_contact_city | Los Angeles
| | Sample_contact_state | California
| | Sample_contact_zip/postal_code | 90095
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM811nnn/GSM811016/suppl/GSM811016_25T.CEL.gz
| | Sample_series_id | GSE32676
| | Sample_series_id | GSE32688
| | Sample_data_row_count | 54675
| | |
|
GSM811017 | GPL570 |
|
human PDAC 14 (mRNA)
|
human pancreatic tumor
|
tissue: pancreas
disease status: pancreatic cancer
ajcc stage: 2A
grade: 2
tumor content: 60
|
gene expression of human PDAC
|
| Sample_geo_accession | GSM811017
| | Sample_status | Public on Oct 08 2011
| | Sample_submission_date | Oct 06 2011
| | Sample_last_update_date | Oct 08 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Roche's MagNA Pure Compact Nucleic Acid Purification System was used for automated RNA isolation.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | As recommended by manufacturer
| | Sample_hyb_protocol | As recommended by manufacturer
| | Sample_scan_protocol | GeneChip Scanner 3000 7G was used for scanning. Affymetrix GeneChip Command Console software (AGCC 3.2) was used for image processing
| | Sample_data_processing | Data was normalized by GCRMA (R/Bioconductor). The presence/abscence calls was then determined by using “Presence-Absence calls with Negative Probesets” (panp) package (Bioconductor) with default parameters
| | Sample_platform_id | GPL570
| | Sample_contact_name | Linh,My,Tran
| | Sample_contact_email | linhtran@ucla.edu
| | Sample_contact_laboratory | Hong Wu
| | Sample_contact_department | 1Department of Molecular and Medical Pharmacology
| | Sample_contact_institute | University of Los Angeles
| | Sample_contact_address | 650 CE Young Drive South
| | Sample_contact_city | Los Angeles
| | Sample_contact_state | California
| | Sample_contact_zip/postal_code | 90095
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM811nnn/GSM811017/suppl/GSM811017_33541A.CEL.gz
| | Sample_series_id | GSE32676
| | Sample_series_id | GSE32688
| | Sample_data_row_count | 54675
| | |
|
GSM811018 | GPL570 |
|
human PDAC 15 (mRNA)
|
human pancreatic tumor
|
tissue: pancreas
disease status: pancreatic cancer
ajcc stage: 2A
grade: 3
tumor content: 50
|
gene expression of human PDAC
|
| Sample_geo_accession | GSM811018
| | Sample_status | Public on Oct 08 2011
| | Sample_submission_date | Oct 06 2011
| | Sample_last_update_date | Oct 08 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Roche's MagNA Pure Compact Nucleic Acid Purification System was used for automated RNA isolation.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | As recommended by manufacturer
| | Sample_hyb_protocol | As recommended by manufacturer
| | Sample_scan_protocol | GeneChip Scanner 3000 7G was used for scanning. Affymetrix GeneChip Command Console software (AGCC 3.2) was used for image processing
| | Sample_data_processing | Data was normalized by GCRMA (R/Bioconductor). The presence/abscence calls was then determined by using “Presence-Absence calls with Negative Probesets” (panp) package (Bioconductor) with default parameters
| | Sample_platform_id | GPL570
| | Sample_contact_name | Linh,My,Tran
| | Sample_contact_email | linhtran@ucla.edu
| | Sample_contact_laboratory | Hong Wu
| | Sample_contact_department | 1Department of Molecular and Medical Pharmacology
| | Sample_contact_institute | University of Los Angeles
| | Sample_contact_address | 650 CE Young Drive South
| | Sample_contact_city | Los Angeles
| | Sample_contact_state | California
| | Sample_contact_zip/postal_code | 90095
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM811nnn/GSM811018/suppl/GSM811018_22T.CEL.gz
| | Sample_series_id | GSE32676
| | Sample_series_id | GSE32688
| | Sample_data_row_count | 54675
| | |
|
GSM811019 | GPL570 |
|
human PDAC 16 (mRNA)
|
human pancreatic tumor
|
tissue: pancreas
disease status: pancreatic cancer
ajcc stage: 2B
grade: 2
tumor content: 50
|
gene expression of human PDAC
|
| Sample_geo_accession | GSM811019
| | Sample_status | Public on Oct 08 2011
| | Sample_submission_date | Oct 06 2011
| | Sample_last_update_date | Oct 08 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Roche's MagNA Pure Compact Nucleic Acid Purification System was used for automated RNA isolation.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | As recommended by manufacturer
| | Sample_hyb_protocol | As recommended by manufacturer
| | Sample_scan_protocol | GeneChip Scanner 3000 7G was used for scanning. Affymetrix GeneChip Command Console software (AGCC 3.2) was used for image processing
| | Sample_data_processing | Data was normalized by GCRMA (R/Bioconductor). The presence/abscence calls was then determined by using “Presence-Absence calls with Negative Probesets” (panp) package (Bioconductor) with default parameters
| | Sample_platform_id | GPL570
| | Sample_contact_name | Linh,My,Tran
| | Sample_contact_email | linhtran@ucla.edu
| | Sample_contact_laboratory | Hong Wu
| | Sample_contact_department | 1Department of Molecular and Medical Pharmacology
| | Sample_contact_institute | University of Los Angeles
| | Sample_contact_address | 650 CE Young Drive South
| | Sample_contact_city | Los Angeles
| | Sample_contact_state | California
| | Sample_contact_zip/postal_code | 90095
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM811nnn/GSM811019/suppl/GSM811019_23T.CEL.gz
| | Sample_series_id | GSE32676
| | Sample_series_id | GSE32688
| | Sample_data_row_count | 54675
| | |
|
GSM811020 | GPL570 |
|
human PDAC 17 (mRNA)
|
human pancreatic tumor
|
tissue: pancreas
disease status: pancreatic cancer
ajcc stage: 2B
grade: 2
tumor content: 50
|
gene expression of human PDAC
|
| Sample_geo_accession | GSM811020
| | Sample_status | Public on Oct 08 2011
| | Sample_submission_date | Oct 06 2011
| | Sample_last_update_date | Oct 08 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Roche's MagNA Pure Compact Nucleic Acid Purification System was used for automated RNA isolation.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | As recommended by manufacturer
| | Sample_hyb_protocol | As recommended by manufacturer
| | Sample_scan_protocol | GeneChip Scanner 3000 7G was used for scanning. Affymetrix GeneChip Command Console software (AGCC 3.2) was used for image processing
| | Sample_data_processing | Data was normalized by GCRMA (R/Bioconductor). The presence/abscence calls was then determined by using “Presence-Absence calls with Negative Probesets” (panp) package (Bioconductor) with default parameters
| | Sample_platform_id | GPL570
| | Sample_contact_name | Linh,My,Tran
| | Sample_contact_email | linhtran@ucla.edu
| | Sample_contact_laboratory | Hong Wu
| | Sample_contact_department | 1Department of Molecular and Medical Pharmacology
| | Sample_contact_institute | University of Los Angeles
| | Sample_contact_address | 650 CE Young Drive South
| | Sample_contact_city | Los Angeles
| | Sample_contact_state | California
| | Sample_contact_zip/postal_code | 90095
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM811nnn/GSM811020/suppl/GSM811020_34992A.CEL.gz
| | Sample_series_id | GSE32676
| | Sample_series_id | GSE32688
| | Sample_data_row_count | 54675
| | |
|
GSM811021 | GPL570 |
|
human PDAC 18 (mRNA)
|
human pancreatic tumor
|
tissue: pancreas
disease status: pancreatic cancer
ajcc stage: 2B
grade: 3
tumor content: 50
|
gene expression of human PDAC
|
| Sample_geo_accession | GSM811021
| | Sample_status | Public on Oct 08 2011
| | Sample_submission_date | Oct 06 2011
| | Sample_last_update_date | Oct 08 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Roche's MagNA Pure Compact Nucleic Acid Purification System was used for automated RNA isolation.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | As recommended by manufacturer
| | Sample_hyb_protocol | As recommended by manufacturer
| | Sample_scan_protocol | GeneChip Scanner 3000 7G was used for scanning. Affymetrix GeneChip Command Console software (AGCC 3.2) was used for image processing
| | Sample_data_processing | Data was normalized by GCRMA (R/Bioconductor). The presence/abscence calls was then determined by using “Presence-Absence calls with Negative Probesets” (panp) package (Bioconductor) with default parameters
| | Sample_platform_id | GPL570
| | Sample_contact_name | Linh,My,Tran
| | Sample_contact_email | linhtran@ucla.edu
| | Sample_contact_laboratory | Hong Wu
| | Sample_contact_department | 1Department of Molecular and Medical Pharmacology
| | Sample_contact_institute | University of Los Angeles
| | Sample_contact_address | 650 CE Young Drive South
| | Sample_contact_city | Los Angeles
| | Sample_contact_state | California
| | Sample_contact_zip/postal_code | 90095
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM811nnn/GSM811021/suppl/GSM811021_3T.CEL.gz
| | Sample_series_id | GSE32676
| | Sample_series_id | GSE32688
| | Sample_data_row_count | 54675
| | |
|
GSM811022 | GPL570 |
|
human PDAC 19 (mRNA)
|
human pancreatic tumor
|
tissue: pancreas
disease status: pancreatic cancer
ajcc stage: 2A
grade: 2
tumor content: 45
|
gene expression of human PDAC
|
| Sample_geo_accession | GSM811022
| | Sample_status | Public on Oct 08 2011
| | Sample_submission_date | Oct 06 2011
| | Sample_last_update_date | Oct 08 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Roche's MagNA Pure Compact Nucleic Acid Purification System was used for automated RNA isolation.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | As recommended by manufacturer
| | Sample_hyb_protocol | As recommended by manufacturer
| | Sample_scan_protocol | GeneChip Scanner 3000 7G was used for scanning. Affymetrix GeneChip Command Console software (AGCC 3.2) was used for image processing
| | Sample_data_processing | Data was normalized by GCRMA (R/Bioconductor). The presence/abscence calls was then determined by using “Presence-Absence calls with Negative Probesets” (panp) package (Bioconductor) with default parameters
| | Sample_platform_id | GPL570
| | Sample_contact_name | Linh,My,Tran
| | Sample_contact_email | linhtran@ucla.edu
| | Sample_contact_laboratory | Hong Wu
| | Sample_contact_department | 1Department of Molecular and Medical Pharmacology
| | Sample_contact_institute | University of Los Angeles
| | Sample_contact_address | 650 CE Young Drive South
| | Sample_contact_city | Los Angeles
| | Sample_contact_state | California
| | Sample_contact_zip/postal_code | 90095
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM811nnn/GSM811022/suppl/GSM811022_20T.CEL.gz
| | Sample_series_id | GSE32676
| | Sample_series_id | GSE32688
| | Sample_data_row_count | 54675
| | |
|
GSM811023 | GPL570 |
|
human PDAC 20 (mRNA)
|
human pancreatic tumor
|
tissue: pancreas
disease status: pancreatic cancer
ajcc stage: 2B
grade: 2
tumor content: 40
|
gene expression of human PDAC
|
| Sample_geo_accession | GSM811023
| | Sample_status | Public on Oct 08 2011
| | Sample_submission_date | Oct 06 2011
| | Sample_last_update_date | Oct 08 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Roche's MagNA Pure Compact Nucleic Acid Purification System was used for automated RNA isolation.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | As recommended by manufacturer
| | Sample_hyb_protocol | As recommended by manufacturer
| | Sample_scan_protocol | GeneChip Scanner 3000 7G was used for scanning. Affymetrix GeneChip Command Console software (AGCC 3.2) was used for image processing
| | Sample_data_processing | Data was normalized by GCRMA (R/Bioconductor). The presence/abscence calls was then determined by using “Presence-Absence calls with Negative Probesets” (panp) package (Bioconductor) with default parameters
| | Sample_platform_id | GPL570
| | Sample_contact_name | Linh,My,Tran
| | Sample_contact_email | linhtran@ucla.edu
| | Sample_contact_laboratory | Hong Wu
| | Sample_contact_department | 1Department of Molecular and Medical Pharmacology
| | Sample_contact_institute | University of Los Angeles
| | Sample_contact_address | 650 CE Young Drive South
| | Sample_contact_city | Los Angeles
| | Sample_contact_state | California
| | Sample_contact_zip/postal_code | 90095
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM811nnn/GSM811023/suppl/GSM811023_21T.CEL.gz
| | Sample_series_id | GSE32676
| | Sample_series_id | GSE32688
| | Sample_data_row_count | 54675
| | |
|
GSM811024 | GPL570 |
|
human PDAC 21 (mRNA)
|
human pancreatic tumor
|
tissue: pancreas
disease status: pancreatic cancer
ajcc stage: 2B
grade: 2
tumor content: 40
|
gene expression of human PDAC
|
| Sample_geo_accession | GSM811024
| | Sample_status | Public on Oct 08 2011
| | Sample_submission_date | Oct 06 2011
| | Sample_last_update_date | Oct 08 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Roche's MagNA Pure Compact Nucleic Acid Purification System was used for automated RNA isolation.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | As recommended by manufacturer
| | Sample_hyb_protocol | As recommended by manufacturer
| | Sample_scan_protocol | GeneChip Scanner 3000 7G was used for scanning. Affymetrix GeneChip Command Console software (AGCC 3.2) was used for image processing
| | Sample_data_processing | Data was normalized by GCRMA (R/Bioconductor). The presence/abscence calls was then determined by using “Presence-Absence calls with Negative Probesets” (panp) package (Bioconductor) with default parameters
| | Sample_platform_id | GPL570
| | Sample_contact_name | Linh,My,Tran
| | Sample_contact_email | linhtran@ucla.edu
| | Sample_contact_laboratory | Hong Wu
| | Sample_contact_department | 1Department of Molecular and Medical Pharmacology
| | Sample_contact_institute | University of Los Angeles
| | Sample_contact_address | 650 CE Young Drive South
| | Sample_contact_city | Los Angeles
| | Sample_contact_state | California
| | Sample_contact_zip/postal_code | 90095
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM811nnn/GSM811024/suppl/GSM811024_32582.CEL.gz
| | Sample_series_id | GSE32676
| | Sample_series_id | GSE32688
| | Sample_data_row_count | 54675
| | |
|
GSM811025 | GPL570 |
|
human PDAC 22 (mRNA)
|
human pancreatic tumor
|
tissue: pancreas
disease status: pancreatic cancer
ajcc stage: 2B
grade: 3
tumor content: 35
|
gene expression of human PDAC
|
| Sample_geo_accession | GSM811025
| | Sample_status | Public on Oct 08 2011
| | Sample_submission_date | Oct 06 2011
| | Sample_last_update_date | Oct 08 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Roche's MagNA Pure Compact Nucleic Acid Purification System was used for automated RNA isolation.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | As recommended by manufacturer
| | Sample_hyb_protocol | As recommended by manufacturer
| | Sample_scan_protocol | GeneChip Scanner 3000 7G was used for scanning. Affymetrix GeneChip Command Console software (AGCC 3.2) was used for image processing
| | Sample_data_processing | Data was normalized by GCRMA (R/Bioconductor). The presence/abscence calls was then determined by using “Presence-Absence calls with Negative Probesets” (panp) package (Bioconductor) with default parameters
| | Sample_platform_id | GPL570
| | Sample_contact_name | Linh,My,Tran
| | Sample_contact_email | linhtran@ucla.edu
| | Sample_contact_laboratory | Hong Wu
| | Sample_contact_department | 1Department of Molecular and Medical Pharmacology
| | Sample_contact_institute | University of Los Angeles
| | Sample_contact_address | 650 CE Young Drive South
| | Sample_contact_city | Los Angeles
| | Sample_contact_state | California
| | Sample_contact_zip/postal_code | 90095
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM811nnn/GSM811025/suppl/GSM811025_24T.CEL.gz
| | Sample_series_id | GSE32676
| | Sample_series_id | GSE32688
| | Sample_data_row_count | 54675
| | |
|
GSM811026 | GPL570 |
|
human PDAC 23 (mRNA)
|
human pancreatic tumor
|
tissue: pancreas
disease status: pancreatic cancer
ajcc stage: 2B
grade: 2
tumor content: 35
|
gene expression of human PDAC
|
| Sample_geo_accession | GSM811026
| | Sample_status | Public on Oct 08 2011
| | Sample_submission_date | Oct 06 2011
| | Sample_last_update_date | Oct 08 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Roche's MagNA Pure Compact Nucleic Acid Purification System was used for automated RNA isolation.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | As recommended by manufacturer
| | Sample_hyb_protocol | As recommended by manufacturer
| | Sample_scan_protocol | GeneChip Scanner 3000 7G was used for scanning. Affymetrix GeneChip Command Console software (AGCC 3.2) was used for image processing
| | Sample_data_processing | Data was normalized by GCRMA (R/Bioconductor). The presence/abscence calls was then determined by using “Presence-Absence calls with Negative Probesets” (panp) package (Bioconductor) with default parameters
| | Sample_platform_id | GPL570
| | Sample_contact_name | Linh,My,Tran
| | Sample_contact_email | linhtran@ucla.edu
| | Sample_contact_laboratory | Hong Wu
| | Sample_contact_department | 1Department of Molecular and Medical Pharmacology
| | Sample_contact_institute | University of Los Angeles
| | Sample_contact_address | 650 CE Young Drive South
| | Sample_contact_city | Los Angeles
| | Sample_contact_state | California
| | Sample_contact_zip/postal_code | 90095
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM811nnn/GSM811026/suppl/GSM811026_2T.CEL.gz
| | Sample_series_id | GSE32676
| | Sample_series_id | GSE32688
| | Sample_data_row_count | 54675
| | |
|
GSM811027 | GPL570 |
|
human PDAC 24 (mRNA)
|
human pancreatic tumor
|
tissue: pancreas
disease status: pancreatic cancer
ajcc stage: 2B
grade: 2
tumor content: 35
|
gene expression of human PDAC
|
| Sample_geo_accession | GSM811027
| | Sample_status | Public on Oct 08 2011
| | Sample_submission_date | Oct 06 2011
| | Sample_last_update_date | Oct 08 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Roche's MagNA Pure Compact Nucleic Acid Purification System was used for automated RNA isolation.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | As recommended by manufacturer
| | Sample_hyb_protocol | As recommended by manufacturer
| | Sample_scan_protocol | GeneChip Scanner 3000 7G was used for scanning. Affymetrix GeneChip Command Console software (AGCC 3.2) was used for image processing
| | Sample_data_processing | Data was normalized by GCRMA (R/Bioconductor). The presence/abscence calls was then determined by using “Presence-Absence calls with Negative Probesets” (panp) package (Bioconductor) with default parameters
| | Sample_platform_id | GPL570
| | Sample_contact_name | Linh,My,Tran
| | Sample_contact_email | linhtran@ucla.edu
| | Sample_contact_laboratory | Hong Wu
| | Sample_contact_department | 1Department of Molecular and Medical Pharmacology
| | Sample_contact_institute | University of Los Angeles
| | Sample_contact_address | 650 CE Young Drive South
| | Sample_contact_city | Los Angeles
| | Sample_contact_state | California
| | Sample_contact_zip/postal_code | 90095
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM811nnn/GSM811027/suppl/GSM811027_33292A.CEL.gz
| | Sample_series_id | GSE32676
| | Sample_series_id | GSE32688
| | Sample_data_row_count | 54675
| | |
|
GSM811028 | GPL570 |
|
human PDAC 25 (mRNA)
|
human pancreatic tumor
|
tissue: pancreas
disease status: pancreatic cancer
ajcc stage: 2A
grade: 2
tumor content: 35
|
gene expression of human PDAC
|
| Sample_geo_accession | GSM811028
| | Sample_status | Public on Oct 08 2011
| | Sample_submission_date | Oct 06 2011
| | Sample_last_update_date | Oct 08 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Roche's MagNA Pure Compact Nucleic Acid Purification System was used for automated RNA isolation.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | As recommended by manufacturer
| | Sample_hyb_protocol | As recommended by manufacturer
| | Sample_scan_protocol | GeneChip Scanner 3000 7G was used for scanning. Affymetrix GeneChip Command Console software (AGCC 3.2) was used for image processing
| | Sample_data_processing | Data was normalized by GCRMA (R/Bioconductor). The presence/abscence calls was then determined by using “Presence-Absence calls with Negative Probesets” (panp) package (Bioconductor) with default parameters
| | Sample_platform_id | GPL570
| | Sample_contact_name | Linh,My,Tran
| | Sample_contact_email | linhtran@ucla.edu
| | Sample_contact_laboratory | Hong Wu
| | Sample_contact_department | 1Department of Molecular and Medical Pharmacology
| | Sample_contact_institute | University of Los Angeles
| | Sample_contact_address | 650 CE Young Drive South
| | Sample_contact_city | Los Angeles
| | Sample_contact_state | California
| | Sample_contact_zip/postal_code | 90095
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM811nnn/GSM811028/suppl/GSM811028_35062A.CEL.gz
| | Sample_series_id | GSE32676
| | Sample_series_id | GSE32688
| | Sample_data_row_count | 54675
| | |
|
GSM811029 | GPL570 |
|
non-malignant pancreas sample 1 (mRNA)
|
non-malignant pancreas
|
tissue: pancreas
disease status: non-malignant pancreas
ajcc stage: NA
grade: NA
tumor content: NA
|
gene expression of human non-malignant pancreas
|
| Sample_geo_accession | GSM811029
| | Sample_status | Public on Oct 08 2011
| | Sample_submission_date | Oct 06 2011
| | Sample_last_update_date | Oct 08 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Roche's MagNA Pure Compact Nucleic Acid Purification System was used for automated RNA isolation.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | As recommended by manufacturer
| | Sample_hyb_protocol | As recommended by manufacturer
| | Sample_scan_protocol | GeneChip Scanner 3000 7G was used for scanning. Affymetrix GeneChip Command Console software (AGCC 3.2) was used for image processing
| | Sample_data_processing | Data was normalized by GCRMA (R/Bioconductor). The presence/abscence calls was then determined by using “Presence-Absence calls with Negative Probesets” (panp) package (Bioconductor) with default parameters
| | Sample_platform_id | GPL570
| | Sample_contact_name | Linh,My,Tran
| | Sample_contact_email | linhtran@ucla.edu
| | Sample_contact_laboratory | Hong Wu
| | Sample_contact_department | 1Department of Molecular and Medical Pharmacology
| | Sample_contact_institute | University of Los Angeles
| | Sample_contact_address | 650 CE Young Drive South
| | Sample_contact_city | Los Angeles
| | Sample_contact_state | California
| | Sample_contact_zip/postal_code | 90095
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM811nnn/GSM811029/suppl/GSM811029_22403A.CEL.gz
| | Sample_series_id | GSE32676
| | Sample_series_id | GSE32688
| | Sample_data_row_count | 54675
| | |
|
GSM811030 | GPL570 |
|
non-malignant pancreas sample 2 (mRNA)
|
non-malignant pancreas
|
tissue: pancreas
disease status: non-malignant pancreas
ajcc stage: NA
grade: NA
tumor content: NA
|
gene expression of human non-malignant pancreas
|
| Sample_geo_accession | GSM811030
| | Sample_status | Public on Oct 08 2011
| | Sample_submission_date | Oct 06 2011
| | Sample_last_update_date | Oct 08 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Roche's MagNA Pure Compact Nucleic Acid Purification System was used for automated RNA isolation.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | As recommended by manufacturer
| | Sample_hyb_protocol | As recommended by manufacturer
| | Sample_scan_protocol | GeneChip Scanner 3000 7G was used for scanning. Affymetrix GeneChip Command Console software (AGCC 3.2) was used for image processing
| | Sample_data_processing | Data was normalized by GCRMA (R/Bioconductor). The presence/abscence calls was then determined by using “Presence-Absence calls with Negative Probesets” (panp) package (Bioconductor) with default parameters
| | Sample_platform_id | GPL570
| | Sample_contact_name | Linh,My,Tran
| | Sample_contact_email | linhtran@ucla.edu
| | Sample_contact_laboratory | Hong Wu
| | Sample_contact_department | 1Department of Molecular and Medical Pharmacology
| | Sample_contact_institute | University of Los Angeles
| | Sample_contact_address | 650 CE Young Drive South
| | Sample_contact_city | Los Angeles
| | Sample_contact_state | California
| | Sample_contact_zip/postal_code | 90095
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM811nnn/GSM811030/suppl/GSM811030_22635A.CEL.gz
| | Sample_series_id | GSE32676
| | Sample_series_id | GSE32688
| | Sample_data_row_count | 54675
| | |
|
GSM811031 | GPL570 |
|
non-malignant pancreas sample 3 (mRNA)
|
non-malignant pancreas
|
tissue: pancreas
disease status: non-malignant pancreas
ajcc stage: NA
grade: NA
tumor content: NA
|
gene expression of human non-malignant pancreas
|
| Sample_geo_accession | GSM811031
| | Sample_status | Public on Oct 08 2011
| | Sample_submission_date | Oct 06 2011
| | Sample_last_update_date | Oct 08 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Roche's MagNA Pure Compact Nucleic Acid Purification System was used for automated RNA isolation.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | As recommended by manufacturer
| | Sample_hyb_protocol | As recommended by manufacturer
| | Sample_scan_protocol | GeneChip Scanner 3000 7G was used for scanning. Affymetrix GeneChip Command Console software (AGCC 3.2) was used for image processing
| | Sample_data_processing | Data was normalized by GCRMA (R/Bioconductor). The presence/abscence calls was then determined by using “Presence-Absence calls with Negative Probesets” (panp) package (Bioconductor) with default parameters
| | Sample_platform_id | GPL570
| | Sample_contact_name | Linh,My,Tran
| | Sample_contact_email | linhtran@ucla.edu
| | Sample_contact_laboratory | Hong Wu
| | Sample_contact_department | 1Department of Molecular and Medical Pharmacology
| | Sample_contact_institute | University of Los Angeles
| | Sample_contact_address | 650 CE Young Drive South
| | Sample_contact_city | Los Angeles
| | Sample_contact_state | California
| | Sample_contact_zip/postal_code | 90095
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM811nnn/GSM811031/suppl/GSM811031_22852A.CEL.gz
| | Sample_series_id | GSE32676
| | Sample_series_id | GSE32688
| | Sample_data_row_count | 54675
| | |
|
GSM811032 | GPL570 |
|
non-malignant pancreas sample 4 (mRNA)
|
non-malignant pancreas
|
tissue: pancreas
disease status: non-malignant pancreas
ajcc stage: NA
grade: NA
tumor content: NA
|
gene expression of human non-malignant pancreas
|
| Sample_geo_accession | GSM811032
| | Sample_status | Public on Oct 08 2011
| | Sample_submission_date | Oct 06 2011
| | Sample_last_update_date | Oct 08 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Roche's MagNA Pure Compact Nucleic Acid Purification System was used for automated RNA isolation.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | As recommended by manufacturer
| | Sample_hyb_protocol | As recommended by manufacturer
| | Sample_scan_protocol | GeneChip Scanner 3000 7G was used for scanning. Affymetrix GeneChip Command Console software (AGCC 3.2) was used for image processing
| | Sample_data_processing | Data was normalized by GCRMA (R/Bioconductor). The presence/abscence calls was then determined by using “Presence-Absence calls with Negative Probesets” (panp) package (Bioconductor) with default parameters
| | Sample_platform_id | GPL570
| | Sample_contact_name | Linh,My,Tran
| | Sample_contact_email | linhtran@ucla.edu
| | Sample_contact_laboratory | Hong Wu
| | Sample_contact_department | 1Department of Molecular and Medical Pharmacology
| | Sample_contact_institute | University of Los Angeles
| | Sample_contact_address | 650 CE Young Drive South
| | Sample_contact_city | Los Angeles
| | Sample_contact_state | California
| | Sample_contact_zip/postal_code | 90095
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM811nnn/GSM811032/suppl/GSM811032_25716A.CEL.gz
| | Sample_series_id | GSE32676
| | Sample_series_id | GSE32688
| | Sample_data_row_count | 54675
| | |
|
GSM811033 | GPL570 |
|
non-malignant pancreas sample 5 (mRNA)
|
non-malignant pancreas
|
tissue: pancreas
disease status: non-malignant pancreas
ajcc stage: NA
grade: NA
tumor content: NA
|
gene expression of human non-malignant pancreas
|
| Sample_geo_accession | GSM811033
| | Sample_status | Public on Oct 08 2011
| | Sample_submission_date | Oct 06 2011
| | Sample_last_update_date | Oct 08 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Roche's MagNA Pure Compact Nucleic Acid Purification System was used for automated RNA isolation.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | As recommended by manufacturer
| | Sample_hyb_protocol | As recommended by manufacturer
| | Sample_scan_protocol | GeneChip Scanner 3000 7G was used for scanning. Affymetrix GeneChip Command Console software (AGCC 3.2) was used for image processing
| | Sample_data_processing | Data was normalized by GCRMA (R/Bioconductor). The presence/abscence calls was then determined by using “Presence-Absence calls with Negative Probesets” (panp) package (Bioconductor) with default parameters
| | Sample_platform_id | GPL570
| | Sample_contact_name | Linh,My,Tran
| | Sample_contact_email | linhtran@ucla.edu
| | Sample_contact_laboratory | Hong Wu
| | Sample_contact_department | 1Department of Molecular and Medical Pharmacology
| | Sample_contact_institute | University of Los Angeles
| | Sample_contact_address | 650 CE Young Drive South
| | Sample_contact_city | Los Angeles
| | Sample_contact_state | California
| | Sample_contact_zip/postal_code | 90095
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM811nnn/GSM811033/suppl/GSM811033_25927A.CEL.gz
| | Sample_series_id | GSE32676
| | Sample_series_id | GSE32688
| | Sample_data_row_count | 54675
| | |
|
GSM811034 | GPL570 |
|
non-malignant pancreas sample 6 (mRNA)
|
non-malignant pancreas
|
tissue: pancreas
disease status: non-malignant pancreas
ajcc stage: NA
grade: NA
tumor content: NA
|
gene expression of human non-malignant pancreas
|
| Sample_geo_accession | GSM811034
| | Sample_status | Public on Oct 08 2011
| | Sample_submission_date | Oct 06 2011
| | Sample_last_update_date | Oct 08 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Roche's MagNA Pure Compact Nucleic Acid Purification System was used for automated RNA isolation.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | As recommended by manufacturer
| | Sample_hyb_protocol | As recommended by manufacturer
| | Sample_scan_protocol | GeneChip Scanner 3000 7G was used for scanning. Affymetrix GeneChip Command Console software (AGCC 3.2) was used for image processing
| | Sample_data_processing | Data was normalized by GCRMA (R/Bioconductor). The presence/abscence calls was then determined by using “Presence-Absence calls with Negative Probesets” (panp) package (Bioconductor) with default parameters
| | Sample_platform_id | GPL570
| | Sample_contact_name | Linh,My,Tran
| | Sample_contact_email | linhtran@ucla.edu
| | Sample_contact_laboratory | Hong Wu
| | Sample_contact_department | 1Department of Molecular and Medical Pharmacology
| | Sample_contact_institute | University of Los Angeles
| | Sample_contact_address | 650 CE Young Drive South
| | Sample_contact_city | Los Angeles
| | Sample_contact_state | California
| | Sample_contact_zip/postal_code | 90095
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM811nnn/GSM811034/suppl/GSM811034_26642A.CEL.gz
| | Sample_series_id | GSE32676
| | Sample_series_id | GSE32688
| | Sample_data_row_count | 54675
| | |
|
GSM811035 | GPL570 |
|
non-malignant pancreas sample 7 (mRNA)
|
non-malignant pancreas
|
tissue: pancreas
disease status: non-malignant pancreas
ajcc stage: NA
grade: NA
tumor content: NA
|
gene expression of human non-malignant pancreas
|
| Sample_geo_accession | GSM811035
| | Sample_status | Public on Oct 08 2011
| | Sample_submission_date | Oct 06 2011
| | Sample_last_update_date | Oct 08 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Roche's MagNA Pure Compact Nucleic Acid Purification System was used for automated RNA isolation.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | As recommended by manufacturer
| | Sample_hyb_protocol | As recommended by manufacturer
| | Sample_scan_protocol | GeneChip Scanner 3000 7G was used for scanning. Affymetrix GeneChip Command Console software (AGCC 3.2) was used for image processing
| | Sample_data_processing | Data was normalized by GCRMA (R/Bioconductor). The presence/abscence calls was then determined by using “Presence-Absence calls with Negative Probesets” (panp) package (Bioconductor) with default parameters
| | Sample_platform_id | GPL570
| | Sample_contact_name | Linh,My,Tran
| | Sample_contact_email | linhtran@ucla.edu
| | Sample_contact_laboratory | Hong Wu
| | Sample_contact_department | 1Department of Molecular and Medical Pharmacology
| | Sample_contact_institute | University of Los Angeles
| | Sample_contact_address | 650 CE Young Drive South
| | Sample_contact_city | Los Angeles
| | Sample_contact_state | California
| | Sample_contact_zip/postal_code | 90095
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM811nnn/GSM811035/suppl/GSM811035_28890A.CEL.gz
| | Sample_series_id | GSE32676
| | Sample_series_id | GSE32688
| | Sample_data_row_count | 54675
| | |
|
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| |
Make groups for comparisons |
(2 groups will be compared at a time) |
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| Select GSMs and click on "Add groups" |
Enter the group name here: |
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