Search results for the GEO ID: GSE3292  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM73653 | GPL570 |
|
VU HNSCCV300142
|
HNSCC from FFPE block
|
HNSCC from FFPE block
|
HNSCC from FFPE block
|
| Sample_geo_accession | GSM73653
| | Sample_status | Public on Nov 29 2005
| | Sample_submission_date | Sep 09 2005
| | Sample_last_update_date | Nov 29 2005
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen RNeasy Mini Kit (Qiagen, Valencia, CA)
| | Sample_label_ch1 | ENZO BioArray High Yield RNA Transcript Labeling Kit (Affymetrix, Santa Clara, CA)
| | Sample_data_processing | quantile normalization of CEL file, PDNN (PerfectMatch) estimation, log2 transformation
| | Sample_platform_id | GPL570
| | Sample_contact_name | Christine,H.,Chung
| | Sample_contact_email | christine.chung@vanderbilt.edu
| | Sample_contact_phone | 615-322-4967
| | Sample_contact_fax | 615343-7602
| | Sample_contact_laboratory | Chung
| | Sample_contact_department | Internal Medicine
| | Sample_contact_institute | Vanderbilt University
| | Sample_contact_address | 777 PRB
| | Sample_contact_city | Nashville
| | Sample_contact_state | TN
| | Sample_contact_zip/postal_code | 37232-6307
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM73nnn/GSM73653/suppl/GSM73653.CEL.gz
| | Sample_series_id | GSE3292
| | Sample_data_row_count | 54675
| | |
|
GSM73654 | GPL570 |
|
VU HNSCCV300171
|
HNSCC from FFPE block
|
HNSCC from FFPE block
|
HNSCC from FFPE block
|
| Sample_geo_accession | GSM73654
| | Sample_status | Public on Nov 29 2005
| | Sample_submission_date | Sep 09 2005
| | Sample_last_update_date | Nov 29 2005
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen RNeasy Mini Kit (Qiagen, Valencia, CA)
| | Sample_label_ch1 | ENZO BioArray High Yield RNA Transcript Labeling Kit (Affymetrix, Santa Clara, CA)
| | Sample_data_processing | quantile normalization of CEL file, PDNN (PerfectMatch) estimation, log2 transformation
| | Sample_platform_id | GPL570
| | Sample_contact_name | Christine,H.,Chung
| | Sample_contact_email | christine.chung@vanderbilt.edu
| | Sample_contact_phone | 615-322-4967
| | Sample_contact_fax | 615343-7602
| | Sample_contact_laboratory | Chung
| | Sample_contact_department | Internal Medicine
| | Sample_contact_institute | Vanderbilt University
| | Sample_contact_address | 777 PRB
| | Sample_contact_city | Nashville
| | Sample_contact_state | TN
| | Sample_contact_zip/postal_code | 37232-6307
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM73nnn/GSM73654/suppl/GSM73654.CEL.gz
| | Sample_series_id | GSE3292
| | Sample_data_row_count | 54675
| | |
|
GSM73655 | GPL570 |
|
VU HNSCCV300251
|
HNSCC from FFPE block
|
HNSCC from FFPE block
|
HNSCC from FFPE block
|
| Sample_geo_accession | GSM73655
| | Sample_status | Public on Nov 29 2005
| | Sample_submission_date | Sep 09 2005
| | Sample_last_update_date | Nov 29 2005
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen RNeasy Mini Kit (Qiagen, Valencia, CA)
| | Sample_label_ch1 | ENZO BioArray High Yield RNA Transcript Labeling Kit (Affymetrix, Santa Clara, CA)
| | Sample_data_processing | quantile normalization of CEL file, PDNN (PerfectMatch) estimation, log2 transformation
| | Sample_platform_id | GPL570
| | Sample_contact_name | Christine,H.,Chung
| | Sample_contact_email | christine.chung@vanderbilt.edu
| | Sample_contact_phone | 615-322-4967
| | Sample_contact_fax | 615343-7602
| | Sample_contact_laboratory | Chung
| | Sample_contact_department | Internal Medicine
| | Sample_contact_institute | Vanderbilt University
| | Sample_contact_address | 777 PRB
| | Sample_contact_city | Nashville
| | Sample_contact_state | TN
| | Sample_contact_zip/postal_code | 37232-6307
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM73nnn/GSM73655/suppl/GSM73655.CEL.gz
| | Sample_series_id | GSE3292
| | Sample_data_row_count | 54675
| | |
|
GSM73656 | GPL570 |
|
VU HNSCCV300373
|
HNSCC from FFPE block
|
HNSCC from FFPE block
|
HNSCC from FFPE block
|
| Sample_geo_accession | GSM73656
| | Sample_status | Public on Nov 29 2005
| | Sample_submission_date | Sep 09 2005
| | Sample_last_update_date | Nov 29 2005
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen RNeasy Mini Kit (Qiagen, Valencia, CA)
| | Sample_label_ch1 | ENZO BioArray High Yield RNA Transcript Labeling Kit (Affymetrix, Santa Clara, CA)
| | Sample_data_processing | quantile normalization of CEL file, PDNN (PerfectMatch) estimation, log2 transformation
| | Sample_platform_id | GPL570
| | Sample_contact_name | Christine,H.,Chung
| | Sample_contact_email | christine.chung@vanderbilt.edu
| | Sample_contact_phone | 615-322-4967
| | Sample_contact_fax | 615343-7602
| | Sample_contact_laboratory | Chung
| | Sample_contact_department | Internal Medicine
| | Sample_contact_institute | Vanderbilt University
| | Sample_contact_address | 777 PRB
| | Sample_contact_city | Nashville
| | Sample_contact_state | TN
| | Sample_contact_zip/postal_code | 37232-6307
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM73nnn/GSM73656/suppl/GSM73656.CEL.gz
| | Sample_series_id | GSE3292
| | Sample_data_row_count | 54675
| | |
|
GSM73657 | GPL570 |
|
VU HNSCCV300383
|
HNSCC from FFPE block
|
HNSCC from FFPE block
|
HNSCC from FFPE block
|
| Sample_geo_accession | GSM73657
| | Sample_status | Public on Nov 29 2005
| | Sample_submission_date | Sep 09 2005
| | Sample_last_update_date | Nov 29 2005
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen RNeasy Mini Kit (Qiagen, Valencia, CA)
| | Sample_label_ch1 | ENZO BioArray High Yield RNA Transcript Labeling Kit (Affymetrix, Santa Clara, CA)
| | Sample_data_processing | quantile normalization of CEL file, PDNN (PerfectMatch) estimation, log2 transformation
| | Sample_platform_id | GPL570
| | Sample_contact_name | Christine,H.,Chung
| | Sample_contact_email | christine.chung@vanderbilt.edu
| | Sample_contact_phone | 615-322-4967
| | Sample_contact_fax | 615343-7602
| | Sample_contact_laboratory | Chung
| | Sample_contact_department | Internal Medicine
| | Sample_contact_institute | Vanderbilt University
| | Sample_contact_address | 777 PRB
| | Sample_contact_city | Nashville
| | Sample_contact_state | TN
| | Sample_contact_zip/postal_code | 37232-6307
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM73nnn/GSM73657/suppl/GSM73657.CEL.gz
| | Sample_series_id | GSE3292
| | Sample_data_row_count | 54675
| | |
|
GSM73658 | GPL570 |
|
VU HNSCCV300400
|
HNSCC from FFPE block
|
HNSCC from FFPE block
|
HNSCC from FFPE block
|
| Sample_geo_accession | GSM73658
| | Sample_status | Public on Nov 29 2005
| | Sample_submission_date | Sep 09 2005
| | Sample_last_update_date | Nov 29 2005
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen RNeasy Mini Kit (Qiagen, Valencia, CA)
| | Sample_label_ch1 | ENZO BioArray High Yield RNA Transcript Labeling Kit (Affymetrix, Santa Clara, CA)
| | Sample_data_processing | quantile normalization of CEL file, PDNN (PerfectMatch) estimation, log2 transformation
| | Sample_platform_id | GPL570
| | Sample_contact_name | Christine,H.,Chung
| | Sample_contact_email | christine.chung@vanderbilt.edu
| | Sample_contact_phone | 615-322-4967
| | Sample_contact_fax | 615343-7602
| | Sample_contact_laboratory | Chung
| | Sample_contact_department | Internal Medicine
| | Sample_contact_institute | Vanderbilt University
| | Sample_contact_address | 777 PRB
| | Sample_contact_city | Nashville
| | Sample_contact_state | TN
| | Sample_contact_zip/postal_code | 37232-6307
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM73nnn/GSM73658/suppl/GSM73658.CEL.gz
| | Sample_series_id | GSE3292
| | Sample_data_row_count | 54675
| | |
|
GSM73659 | GPL570 |
|
VU HNSCCV300423
|
HNSCC from FFPE block
|
HNSCC from FFPE block
|
HNSCC from FFPE block
|
| Sample_geo_accession | GSM73659
| | Sample_status | Public on Nov 29 2005
| | Sample_submission_date | Sep 09 2005
| | Sample_last_update_date | Nov 29 2005
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen RNeasy Mini Kit (Qiagen, Valencia, CA)
| | Sample_label_ch1 | ENZO BioArray High Yield RNA Transcript Labeling Kit (Affymetrix, Santa Clara, CA)
| | Sample_data_processing | quantile normalization of CEL file, PDNN (PerfectMatch) estimation, log2 transformation
| | Sample_platform_id | GPL570
| | Sample_contact_name | Christine,H.,Chung
| | Sample_contact_email | christine.chung@vanderbilt.edu
| | Sample_contact_phone | 615-322-4967
| | Sample_contact_fax | 615343-7602
| | Sample_contact_laboratory | Chung
| | Sample_contact_department | Internal Medicine
| | Sample_contact_institute | Vanderbilt University
| | Sample_contact_address | 777 PRB
| | Sample_contact_city | Nashville
| | Sample_contact_state | TN
| | Sample_contact_zip/postal_code | 37232-6307
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM73nnn/GSM73659/suppl/GSM73659.CEL.gz
| | Sample_series_id | GSE3292
| | Sample_data_row_count | 54675
| | |
|
GSM73660 | GPL570 |
|
VU HNSCCV300533
|
HNSCC from FFPE block
|
HNSCC from FFPE block
|
HNSCC from FFPE block
|
| Sample_geo_accession | GSM73660
| | Sample_status | Public on Nov 29 2005
| | Sample_submission_date | Sep 09 2005
| | Sample_last_update_date | Nov 29 2005
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen RNeasy Mini Kit (Qiagen, Valencia, CA)
| | Sample_label_ch1 | ENZO BioArray High Yield RNA Transcript Labeling Kit (Affymetrix, Santa Clara, CA)
| | Sample_data_processing | quantile normalization of CEL file, PDNN (PerfectMatch) estimation, log2 transformation
| | Sample_platform_id | GPL570
| | Sample_contact_name | Christine,H.,Chung
| | Sample_contact_email | christine.chung@vanderbilt.edu
| | Sample_contact_phone | 615-322-4967
| | Sample_contact_fax | 615343-7602
| | Sample_contact_laboratory | Chung
| | Sample_contact_department | Internal Medicine
| | Sample_contact_institute | Vanderbilt University
| | Sample_contact_address | 777 PRB
| | Sample_contact_city | Nashville
| | Sample_contact_state | TN
| | Sample_contact_zip/postal_code | 37232-6307
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM73nnn/GSM73660/suppl/GSM73660.CEL.gz
| | Sample_series_id | GSE3292
| | Sample_data_row_count | 54675
| | |
|
GSM73661 | GPL570 |
|
VU HNSCCV300637
|
HNSCC from FFPE block
|
HNSCC from FFPE block
|
HNSCC from FFPE block
|
| Sample_geo_accession | GSM73661
| | Sample_status | Public on Nov 29 2005
| | Sample_submission_date | Sep 09 2005
| | Sample_last_update_date | Nov 29 2005
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen RNeasy Mini Kit (Qiagen, Valencia, CA)
| | Sample_label_ch1 | ENZO BioArray High Yield RNA Transcript Labeling Kit (Affymetrix, Santa Clara, CA)
| | Sample_data_processing | quantile normalization of CEL file, PDNN (PerfectMatch) estimation, log2 transformation
| | Sample_platform_id | GPL570
| | Sample_contact_name | Christine,H.,Chung
| | Sample_contact_email | christine.chung@vanderbilt.edu
| | Sample_contact_phone | 615-322-4967
| | Sample_contact_fax | 615343-7602
| | Sample_contact_laboratory | Chung
| | Sample_contact_department | Internal Medicine
| | Sample_contact_institute | Vanderbilt University
| | Sample_contact_address | 777 PRB
| | Sample_contact_city | Nashville
| | Sample_contact_state | TN
| | Sample_contact_zip/postal_code | 37232-6307
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM73nnn/GSM73661/suppl/GSM73661.CEL.gz
| | Sample_series_id | GSE3292
| | Sample_data_row_count | 54675
| | |
|
GSM73662 | GPL570 |
|
VU HNSCCV300663
|
HNSCC from FFPE block
|
HNSCC from FFPE block
|
HNSCC from FFPE block
|
| Sample_geo_accession | GSM73662
| | Sample_status | Public on Nov 29 2005
| | Sample_submission_date | Sep 09 2005
| | Sample_last_update_date | Nov 29 2005
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen RNeasy Mini Kit (Qiagen, Valencia, CA)
| | Sample_label_ch1 | ENZO BioArray High Yield RNA Transcript Labeling Kit (Affymetrix, Santa Clara, CA)
| | Sample_data_processing | quantile normalization of CEL file, PDNN (PerfectMatch) estimation, log2 transformation
| | Sample_platform_id | GPL570
| | Sample_contact_name | Christine,H.,Chung
| | Sample_contact_email | christine.chung@vanderbilt.edu
| | Sample_contact_phone | 615-322-4967
| | Sample_contact_fax | 615343-7602
| | Sample_contact_laboratory | Chung
| | Sample_contact_department | Internal Medicine
| | Sample_contact_institute | Vanderbilt University
| | Sample_contact_address | 777 PRB
| | Sample_contact_city | Nashville
| | Sample_contact_state | TN
| | Sample_contact_zip/postal_code | 37232-6307
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM73nnn/GSM73662/suppl/GSM73662.CEL.gz
| | Sample_series_id | GSE3292
| | Sample_data_row_count | 54675
| | |
|
GSM73663 | GPL570 |
|
VU HNSCCV300688
|
HNSCC from FFPE block
|
HNSCC from FFPE block
|
HNSCC from FFPE block
|
| Sample_geo_accession | GSM73663
| | Sample_status | Public on Nov 29 2005
| | Sample_submission_date | Sep 09 2005
| | Sample_last_update_date | Nov 29 2005
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen RNeasy Mini Kit (Qiagen, Valencia, CA)
| | Sample_label_ch1 | ENZO BioArray High Yield RNA Transcript Labeling Kit (Affymetrix, Santa Clara, CA)
| | Sample_data_processing | quantile normalization of CEL file, PDNN (PerfectMatch) estimation, log2 transformation
| | Sample_platform_id | GPL570
| | Sample_contact_name | Christine,H.,Chung
| | Sample_contact_email | christine.chung@vanderbilt.edu
| | Sample_contact_phone | 615-322-4967
| | Sample_contact_fax | 615343-7602
| | Sample_contact_laboratory | Chung
| | Sample_contact_department | Internal Medicine
| | Sample_contact_institute | Vanderbilt University
| | Sample_contact_address | 777 PRB
| | Sample_contact_city | Nashville
| | Sample_contact_state | TN
| | Sample_contact_zip/postal_code | 37232-6307
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM73nnn/GSM73663/suppl/GSM73663.CEL.gz
| | Sample_series_id | GSE3292
| | Sample_data_row_count | 54675
| | |
|
GSM73664 | GPL570 |
|
VU HNSCCV300710
|
HNSCC from FFPE block
|
HNSCC from FFPE block
|
HNSCC from FFPE block
|
| Sample_geo_accession | GSM73664
| | Sample_status | Public on Nov 29 2005
| | Sample_submission_date | Sep 09 2005
| | Sample_last_update_date | Nov 29 2005
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen RNeasy Mini Kit (Qiagen, Valencia, CA)
| | Sample_label_ch1 | ENZO BioArray High Yield RNA Transcript Labeling Kit (Affymetrix, Santa Clara, CA)
| | Sample_data_processing | quantile normalization of CEL file, PDNN (PerfectMatch) estimation, log2 transformation
| | Sample_platform_id | GPL570
| | Sample_contact_name | Christine,H.,Chung
| | Sample_contact_email | christine.chung@vanderbilt.edu
| | Sample_contact_phone | 615-322-4967
| | Sample_contact_fax | 615343-7602
| | Sample_contact_laboratory | Chung
| | Sample_contact_department | Internal Medicine
| | Sample_contact_institute | Vanderbilt University
| | Sample_contact_address | 777 PRB
| | Sample_contact_city | Nashville
| | Sample_contact_state | TN
| | Sample_contact_zip/postal_code | 37232-6307
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM73nnn/GSM73664/suppl/GSM73664.CEL.gz
| | Sample_series_id | GSE3292
| | Sample_data_row_count | 54675
| | |
|
GSM73665 | GPL570 |
|
UNC HNSCC00-0318
|
HNSCC from FFPE block
|
HNSCC from FFPE block
|
HNSCC from FFPE block
|
| Sample_geo_accession | GSM73665
| | Sample_status | Public on Nov 29 2005
| | Sample_submission_date | Sep 09 2005
| | Sample_last_update_date | Nov 29 2005
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen RNeasy Mini Kit (Qiagen, Valencia, CA)
| | Sample_label_ch1 | ENZO BioArray High Yield RNA Transcript Labeling Kit (Affymetrix, Santa Clara, CA)
| | Sample_data_processing | quantile normalization of CEL file, PDNN (PerfectMatch) estimation, log2 transformation
| | Sample_platform_id | GPL570
| | Sample_contact_name | Christine,H.,Chung
| | Sample_contact_email | christine.chung@vanderbilt.edu
| | Sample_contact_phone | 615-322-4967
| | Sample_contact_fax | 615343-7602
| | Sample_contact_laboratory | Chung
| | Sample_contact_department | Internal Medicine
| | Sample_contact_institute | Vanderbilt University
| | Sample_contact_address | 777 PRB
| | Sample_contact_city | Nashville
| | Sample_contact_state | TN
| | Sample_contact_zip/postal_code | 37232-6307
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM73nnn/GSM73665/suppl/GSM73665.CEL.gz
| | Sample_series_id | GSE3292
| | Sample_data_row_count | 54675
| | |
|
GSM73666 | GPL570 |
|
UNC HNSCC01-0291
|
HNSCC from FFPE block
|
HNSCC from FFPE block
|
HNSCC from FFPE block
|
| Sample_geo_accession | GSM73666
| | Sample_status | Public on Nov 29 2005
| | Sample_submission_date | Sep 09 2005
| | Sample_last_update_date | Nov 29 2005
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen RNeasy Mini Kit (Qiagen, Valencia, CA)
| | Sample_label_ch1 | ENZO BioArray High Yield RNA Transcript Labeling Kit (Affymetrix, Santa Clara, CA)
| | Sample_data_processing | quantile normalization of CEL file, PDNN (PerfectMatch) estimation, log2 transformation
| | Sample_platform_id | GPL570
| | Sample_contact_name | Christine,H.,Chung
| | Sample_contact_email | christine.chung@vanderbilt.edu
| | Sample_contact_phone | 615-322-4967
| | Sample_contact_fax | 615343-7602
| | Sample_contact_laboratory | Chung
| | Sample_contact_department | Internal Medicine
| | Sample_contact_institute | Vanderbilt University
| | Sample_contact_address | 777 PRB
| | Sample_contact_city | Nashville
| | Sample_contact_state | TN
| | Sample_contact_zip/postal_code | 37232-6307
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM73nnn/GSM73666/suppl/GSM73666.CEL.gz
| | Sample_series_id | GSE3292
| | Sample_data_row_count | 54675
| | |
|
GSM73667 | GPL570 |
|
UNC HNSCC01-0393
|
HNSCC from FFPE block
|
HNSCC from FFPE block
|
HNSCC from FFPE block
|
| Sample_geo_accession | GSM73667
| | Sample_status | Public on Nov 29 2005
| | Sample_submission_date | Sep 09 2005
| | Sample_last_update_date | Nov 29 2005
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen RNeasy Mini Kit (Qiagen, Valencia, CA)
| | Sample_label_ch1 | ENZO BioArray High Yield RNA Transcript Labeling Kit (Affymetrix, Santa Clara, CA)
| | Sample_data_processing | quantile normalization of CEL file, PDNN (PerfectMatch) estimation, log2 transformation
| | Sample_platform_id | GPL570
| | Sample_contact_name | Christine,H.,Chung
| | Sample_contact_email | christine.chung@vanderbilt.edu
| | Sample_contact_phone | 615-322-4967
| | Sample_contact_fax | 615343-7602
| | Sample_contact_laboratory | Chung
| | Sample_contact_department | Internal Medicine
| | Sample_contact_institute | Vanderbilt University
| | Sample_contact_address | 777 PRB
| | Sample_contact_city | Nashville
| | Sample_contact_state | TN
| | Sample_contact_zip/postal_code | 37232-6307
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM73nnn/GSM73667/suppl/GSM73667.CEL.gz
| | Sample_series_id | GSE3292
| | Sample_data_row_count | 54675
| | |
|
GSM73668 | GPL570 |
|
UNC HNSCC01-0446
|
HNSCC from FFPE block
|
HNSCC from FFPE block
|
HNSCC from FFPE block
|
| Sample_geo_accession | GSM73668
| | Sample_status | Public on Nov 29 2005
| | Sample_submission_date | Sep 09 2005
| | Sample_last_update_date | Nov 29 2005
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen RNeasy Mini Kit (Qiagen, Valencia, CA)
| | Sample_label_ch1 | ENZO BioArray High Yield RNA Transcript Labeling Kit (Affymetrix, Santa Clara, CA)
| | Sample_data_processing | quantile normalization of CEL file, PDNN (PerfectMatch) estimation, log2 transformation
| | Sample_platform_id | GPL570
| | Sample_contact_name | Christine,H.,Chung
| | Sample_contact_email | christine.chung@vanderbilt.edu
| | Sample_contact_phone | 615-322-4967
| | Sample_contact_fax | 615343-7602
| | Sample_contact_laboratory | Chung
| | Sample_contact_department | Internal Medicine
| | Sample_contact_institute | Vanderbilt University
| | Sample_contact_address | 777 PRB
| | Sample_contact_city | Nashville
| | Sample_contact_state | TN
| | Sample_contact_zip/postal_code | 37232-6307
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM73nnn/GSM73668/suppl/GSM73668.CEL.gz
| | Sample_series_id | GSE3292
| | Sample_data_row_count | 54675
| | |
|
GSM73669 | GPL570 |
|
UNC HNSCC02-0136
|
HNSCC from FFPE block
|
HNSCC from FFPE block
|
HNSCC from FFPE block
|
| Sample_geo_accession | GSM73669
| | Sample_status | Public on Nov 29 2005
| | Sample_submission_date | Sep 09 2005
| | Sample_last_update_date | Nov 29 2005
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen RNeasy Mini Kit (Qiagen, Valencia, CA)
| | Sample_label_ch1 | ENZO BioArray High Yield RNA Transcript Labeling Kit (Affymetrix, Santa Clara, CA)
| | Sample_data_processing | quantile normalization of CEL file, PDNN (PerfectMatch) estimation, log2 transformation
| | Sample_platform_id | GPL570
| | Sample_contact_name | Christine,H.,Chung
| | Sample_contact_email | christine.chung@vanderbilt.edu
| | Sample_contact_phone | 615-322-4967
| | Sample_contact_fax | 615343-7602
| | Sample_contact_laboratory | Chung
| | Sample_contact_department | Internal Medicine
| | Sample_contact_institute | Vanderbilt University
| | Sample_contact_address | 777 PRB
| | Sample_contact_city | Nashville
| | Sample_contact_state | TN
| | Sample_contact_zip/postal_code | 37232-6307
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM73nnn/GSM73669/suppl/GSM73669.CEL.gz
| | Sample_series_id | GSE3292
| | Sample_data_row_count | 54675
| | |
|
GSM73670 | GPL570 |
|
UNC HNSCC02-0152
|
HNSCC from FFPE block
|
HNSCC from FFPE block
|
HNSCC from FFPE block
|
| Sample_geo_accession | GSM73670
| | Sample_status | Public on Nov 29 2005
| | Sample_submission_date | Sep 09 2005
| | Sample_last_update_date | Nov 29 2005
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen RNeasy Mini Kit (Qiagen, Valencia, CA)
| | Sample_label_ch1 | ENZO BioArray High Yield RNA Transcript Labeling Kit (Affymetrix, Santa Clara, CA)
| | Sample_data_processing | quantile normalization of CEL file, PDNN (PerfectMatch) estimation, log2 transformation
| | Sample_platform_id | GPL570
| | Sample_contact_name | Christine,H.,Chung
| | Sample_contact_email | christine.chung@vanderbilt.edu
| | Sample_contact_phone | 615-322-4967
| | Sample_contact_fax | 615343-7602
| | Sample_contact_laboratory | Chung
| | Sample_contact_department | Internal Medicine
| | Sample_contact_institute | Vanderbilt University
| | Sample_contact_address | 777 PRB
| | Sample_contact_city | Nashville
| | Sample_contact_state | TN
| | Sample_contact_zip/postal_code | 37232-6307
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM73nnn/GSM73670/suppl/GSM73670.CEL.gz
| | Sample_series_id | GSE3292
| | Sample_data_row_count | 54675
| | |
|
GSM73671 | GPL570 |
|
UNC HNSCC02-0323
|
HNSCC from FFPE block
|
HNSCC from FFPE block
|
HNSCC from FFPE block
|
| Sample_geo_accession | GSM73671
| | Sample_status | Public on Nov 29 2005
| | Sample_submission_date | Sep 09 2005
| | Sample_last_update_date | Nov 29 2005
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen RNeasy Mini Kit (Qiagen, Valencia, CA)
| | Sample_label_ch1 | ENZO BioArray High Yield RNA Transcript Labeling Kit (Affymetrix, Santa Clara, CA)
| | Sample_data_processing | quantile normalization of CEL file, PDNN (PerfectMatch) estimation, log2 transformation
| | Sample_platform_id | GPL570
| | Sample_contact_name | Christine,H.,Chung
| | Sample_contact_email | christine.chung@vanderbilt.edu
| | Sample_contact_phone | 615-322-4967
| | Sample_contact_fax | 615343-7602
| | Sample_contact_laboratory | Chung
| | Sample_contact_department | Internal Medicine
| | Sample_contact_institute | Vanderbilt University
| | Sample_contact_address | 777 PRB
| | Sample_contact_city | Nashville
| | Sample_contact_state | TN
| | Sample_contact_zip/postal_code | 37232-6307
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM73nnn/GSM73671/suppl/GSM73671.CEL.gz
| | Sample_series_id | GSE3292
| | Sample_data_row_count | 54675
| | |
|
GSM73672 | GPL570 |
|
UNC HNSCC02-0333
|
HNSCC from FFPE block
|
HNSCC from FFPE block
|
HNSCC from FFPE block
|
| Sample_geo_accession | GSM73672
| | Sample_status | Public on Nov 29 2005
| | Sample_submission_date | Sep 09 2005
| | Sample_last_update_date | Nov 29 2005
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen RNeasy Mini Kit (Qiagen, Valencia, CA)
| | Sample_label_ch1 | ENZO BioArray High Yield RNA Transcript Labeling Kit (Affymetrix, Santa Clara, CA)
| | Sample_data_processing | quantile normalization of CEL file, PDNN (PerfectMatch) estimation, log2 transformation
| | Sample_platform_id | GPL570
| | Sample_contact_name | Christine,H.,Chung
| | Sample_contact_email | christine.chung@vanderbilt.edu
| | Sample_contact_phone | 615-322-4967
| | Sample_contact_fax | 615343-7602
| | Sample_contact_laboratory | Chung
| | Sample_contact_department | Internal Medicine
| | Sample_contact_institute | Vanderbilt University
| | Sample_contact_address | 777 PRB
| | Sample_contact_city | Nashville
| | Sample_contact_state | TN
| | Sample_contact_zip/postal_code | 37232-6307
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM73nnn/GSM73672/suppl/GSM73672.CEL.gz
| | Sample_series_id | GSE3292
| | Sample_data_row_count | 54675
| | |
|
GSM73673 | GPL570 |
|
UNC HNSCC02-0421
|
HNSCC from FFPE block
|
HNSCC from FFPE block
|
HNSCC from FFPE block
|
| Sample_geo_accession | GSM73673
| | Sample_status | Public on Nov 29 2005
| | Sample_submission_date | Sep 09 2005
| | Sample_last_update_date | Nov 29 2005
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen RNeasy Mini Kit (Qiagen, Valencia, CA)
| | Sample_label_ch1 | ENZO BioArray High Yield RNA Transcript Labeling Kit (Affymetrix, Santa Clara, CA)
| | Sample_data_processing | quantile normalization of CEL file, PDNN (PerfectMatch) estimation, log2 transformation
| | Sample_platform_id | GPL570
| | Sample_contact_name | Christine,H.,Chung
| | Sample_contact_email | christine.chung@vanderbilt.edu
| | Sample_contact_phone | 615-322-4967
| | Sample_contact_fax | 615343-7602
| | Sample_contact_laboratory | Chung
| | Sample_contact_department | Internal Medicine
| | Sample_contact_institute | Vanderbilt University
| | Sample_contact_address | 777 PRB
| | Sample_contact_city | Nashville
| | Sample_contact_state | TN
| | Sample_contact_zip/postal_code | 37232-6307
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM73nnn/GSM73673/suppl/GSM73673.CEL.gz
| | Sample_series_id | GSE3292
| | Sample_data_row_count | 54675
| | |
|
GSM73674 | GPL570 |
|
UNC HNSCC02-0454
|
HNSCC from FFPE block
|
HNSCC from FFPE block
|
HNSCC from FFPE block
|
| Sample_geo_accession | GSM73674
| | Sample_status | Public on Nov 29 2005
| | Sample_submission_date | Sep 09 2005
| | Sample_last_update_date | Nov 29 2005
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen RNeasy Mini Kit (Qiagen, Valencia, CA)
| | Sample_label_ch1 | ENZO BioArray High Yield RNA Transcript Labeling Kit (Affymetrix, Santa Clara, CA)
| | Sample_data_processing | quantile normalization of CEL file, PDNN (PerfectMatch) estimation, log2 transformation
| | Sample_platform_id | GPL570
| | Sample_contact_name | Christine,H.,Chung
| | Sample_contact_email | christine.chung@vanderbilt.edu
| | Sample_contact_phone | 615-322-4967
| | Sample_contact_fax | 615343-7602
| | Sample_contact_laboratory | Chung
| | Sample_contact_department | Internal Medicine
| | Sample_contact_institute | Vanderbilt University
| | Sample_contact_address | 777 PRB
| | Sample_contact_city | Nashville
| | Sample_contact_state | TN
| | Sample_contact_zip/postal_code | 37232-6307
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM73nnn/GSM73674/suppl/GSM73674.CEL.gz
| | Sample_series_id | GSE3292
| | Sample_data_row_count | 54675
| | |
|
GSM73675 | GPL570 |
|
UNC HNSCC02-0486
|
HNSCC from FFPE block
|
HNSCC from FFPE block
|
HNSCC from FFPE block
|
| Sample_geo_accession | GSM73675
| | Sample_status | Public on Nov 29 2005
| | Sample_submission_date | Sep 09 2005
| | Sample_last_update_date | Nov 29 2005
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen RNeasy Mini Kit (Qiagen, Valencia, CA)
| | Sample_label_ch1 | ENZO BioArray High Yield RNA Transcript Labeling Kit (Affymetrix, Santa Clara, CA)
| | Sample_data_processing | quantile normalization of CEL file, PDNN (PerfectMatch) estimation, log2 transformation
| | Sample_platform_id | GPL570
| | Sample_contact_name | Christine,H.,Chung
| | Sample_contact_email | christine.chung@vanderbilt.edu
| | Sample_contact_phone | 615-322-4967
| | Sample_contact_fax | 615343-7602
| | Sample_contact_laboratory | Chung
| | Sample_contact_department | Internal Medicine
| | Sample_contact_institute | Vanderbilt University
| | Sample_contact_address | 777 PRB
| | Sample_contact_city | Nashville
| | Sample_contact_state | TN
| | Sample_contact_zip/postal_code | 37232-6307
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM73nnn/GSM73675/suppl/GSM73675.CEL.gz
| | Sample_series_id | GSE3292
| | Sample_data_row_count | 54675
| | |
|
GSM73676 | GPL570 |
|
UNC HNSCC02-0502
|
HNSCC from FFPE block
|
HNSCC from FFPE block
|
HNSCC from FFPE block
|
| Sample_geo_accession | GSM73676
| | Sample_status | Public on Nov 29 2005
| | Sample_submission_date | Sep 09 2005
| | Sample_last_update_date | Nov 29 2005
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen RNeasy Mini Kit (Qiagen, Valencia, CA)
| | Sample_label_ch1 | ENZO BioArray High Yield RNA Transcript Labeling Kit (Affymetrix, Santa Clara, CA)
| | Sample_data_processing | quantile normalization of CEL file, PDNN (PerfectMatch) estimation, log2 transformation
| | Sample_platform_id | GPL570
| | Sample_contact_name | Christine,H.,Chung
| | Sample_contact_email | christine.chung@vanderbilt.edu
| | Sample_contact_phone | 615-322-4967
| | Sample_contact_fax | 615343-7602
| | Sample_contact_laboratory | Chung
| | Sample_contact_department | Internal Medicine
| | Sample_contact_institute | Vanderbilt University
| | Sample_contact_address | 777 PRB
| | Sample_contact_city | Nashville
| | Sample_contact_state | TN
| | Sample_contact_zip/postal_code | 37232-6307
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM73nnn/GSM73676/suppl/GSM73676.CEL.gz
| | Sample_series_id | GSE3292
| | Sample_data_row_count | 54675
| | |
|
GSM73677 | GPL570 |
|
UNC HNSCC03-0034
|
HNSCC from FFPE block
|
HNSCC from FFPE block
|
HNSCC from FFPE block
|
| Sample_geo_accession | GSM73677
| | Sample_status | Public on Nov 29 2005
| | Sample_submission_date | Sep 09 2005
| | Sample_last_update_date | Nov 29 2005
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen RNeasy Mini Kit (Qiagen, Valencia, CA)
| | Sample_label_ch1 | ENZO BioArray High Yield RNA Transcript Labeling Kit (Affymetrix, Santa Clara, CA)
| | Sample_data_processing | quantile normalization of CEL file, PDNN (PerfectMatch) estimation, log2 transformation
| | Sample_platform_id | GPL570
| | Sample_contact_name | Christine,H.,Chung
| | Sample_contact_email | christine.chung@vanderbilt.edu
| | Sample_contact_phone | 615-322-4967
| | Sample_contact_fax | 615343-7602
| | Sample_contact_laboratory | Chung
| | Sample_contact_department | Internal Medicine
| | Sample_contact_institute | Vanderbilt University
| | Sample_contact_address | 777 PRB
| | Sample_contact_city | Nashville
| | Sample_contact_state | TN
| | Sample_contact_zip/postal_code | 37232-6307
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM73nnn/GSM73677/suppl/GSM73677.CEL.gz
| | Sample_series_id | GSE3292
| | Sample_data_row_count | 54675
| | |
|
GSM73678 | GPL570 |
|
UNC HNSCC03-0079
|
HNSCC from FFPE block
|
HNSCC from FFPE block
|
HNSCC from FFPE block
|
| Sample_geo_accession | GSM73678
| | Sample_status | Public on Nov 29 2005
| | Sample_submission_date | Sep 09 2005
| | Sample_last_update_date | Nov 29 2005
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen RNeasy Mini Kit (Qiagen, Valencia, CA)
| | Sample_label_ch1 | ENZO BioArray High Yield RNA Transcript Labeling Kit (Affymetrix, Santa Clara, CA)
| | Sample_data_processing | quantile normalization of CEL file, PDNN (PerfectMatch) estimation, log2 transformation
| | Sample_platform_id | GPL570
| | Sample_contact_name | Christine,H.,Chung
| | Sample_contact_email | christine.chung@vanderbilt.edu
| | Sample_contact_phone | 615-322-4967
| | Sample_contact_fax | 615343-7602
| | Sample_contact_laboratory | Chung
| | Sample_contact_department | Internal Medicine
| | Sample_contact_institute | Vanderbilt University
| | Sample_contact_address | 777 PRB
| | Sample_contact_city | Nashville
| | Sample_contact_state | TN
| | Sample_contact_zip/postal_code | 37232-6307
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM73nnn/GSM73678/suppl/GSM73678.CEL.gz
| | Sample_series_id | GSE3292
| | Sample_data_row_count | 54675
| | |
|
GSM73679 | GPL570 |
|
UNC HNSCC96-0071
|
HNSCC from FFPE block
|
HNSCC from FFPE block
|
HNSCC from FFPE block
|
| Sample_geo_accession | GSM73679
| | Sample_status | Public on Nov 29 2005
| | Sample_submission_date | Sep 09 2005
| | Sample_last_update_date | Nov 29 2005
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen RNeasy Mini Kit (Qiagen, Valencia, CA)
| | Sample_label_ch1 | ENZO BioArray High Yield RNA Transcript Labeling Kit (Affymetrix, Santa Clara, CA)
| | Sample_data_processing | quantile normalization of CEL file, PDNN (PerfectMatch) estimation, log2 transformation
| | Sample_platform_id | GPL570
| | Sample_contact_name | Christine,H.,Chung
| | Sample_contact_email | christine.chung@vanderbilt.edu
| | Sample_contact_phone | 615-322-4967
| | Sample_contact_fax | 615343-7602
| | Sample_contact_laboratory | Chung
| | Sample_contact_department | Internal Medicine
| | Sample_contact_institute | Vanderbilt University
| | Sample_contact_address | 777 PRB
| | Sample_contact_city | Nashville
| | Sample_contact_state | TN
| | Sample_contact_zip/postal_code | 37232-6307
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM73nnn/GSM73679/suppl/GSM73679.CEL.gz
| | Sample_series_id | GSE3292
| | Sample_data_row_count | 54675
| | |
|
GSM73680 | GPL570 |
|
UNC HNSCC96-0671
|
HNSCC from FFPE block
|
HNSCC from FFPE block
|
HNSCC from FFPE block
|
| Sample_geo_accession | GSM73680
| | Sample_status | Public on Nov 29 2005
| | Sample_submission_date | Sep 09 2005
| | Sample_last_update_date | Nov 29 2005
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen RNeasy Mini Kit (Qiagen, Valencia, CA)
| | Sample_label_ch1 | ENZO BioArray High Yield RNA Transcript Labeling Kit (Affymetrix, Santa Clara, CA)
| | Sample_data_processing | quantile normalization of CEL file, PDNN (PerfectMatch) estimation, log2 transformation
| | Sample_platform_id | GPL570
| | Sample_contact_name | Christine,H.,Chung
| | Sample_contact_email | christine.chung@vanderbilt.edu
| | Sample_contact_phone | 615-322-4967
| | Sample_contact_fax | 615343-7602
| | Sample_contact_laboratory | Chung
| | Sample_contact_department | Internal Medicine
| | Sample_contact_institute | Vanderbilt University
| | Sample_contact_address | 777 PRB
| | Sample_contact_city | Nashville
| | Sample_contact_state | TN
| | Sample_contact_zip/postal_code | 37232-6307
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM73nnn/GSM73680/suppl/GSM73680.CEL.gz
| | Sample_series_id | GSE3292
| | Sample_data_row_count | 54675
| | |
|
GSM73681 | GPL570 |
|
VU HNSCCV300148
|
HNSCC from FFPE block
|
HNSCC from FFPE block
|
HNSCC from FFPE block
|
| Sample_geo_accession | GSM73681
| | Sample_status | Public on Nov 29 2005
| | Sample_submission_date | Sep 09 2005
| | Sample_last_update_date | Nov 29 2005
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen RNeasy Mini Kit (Qiagen, Valencia, CA)
| | Sample_label_ch1 | ENZO BioArray High Yield RNA Transcript Labeling Kit (Affymetrix, Santa Clara, CA)
| | Sample_data_processing | quantile normalization of CEL file, PDNN (PerfectMatch) estimation, log2 transformation
| | Sample_platform_id | GPL570
| | Sample_contact_name | Christine,H.,Chung
| | Sample_contact_email | christine.chung@vanderbilt.edu
| | Sample_contact_phone | 615-322-4967
| | Sample_contact_fax | 615343-7602
| | Sample_contact_laboratory | Chung
| | Sample_contact_department | Internal Medicine
| | Sample_contact_institute | Vanderbilt University
| | Sample_contact_address | 777 PRB
| | Sample_contact_city | Nashville
| | Sample_contact_state | TN
| | Sample_contact_zip/postal_code | 37232-6307
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM73nnn/GSM73681/suppl/GSM73681.CEL.gz
| | Sample_series_id | GSE3292
| | Sample_data_row_count | 54675
| | |
|
GSM73682 | GPL570 |
|
VU HNSCCV300431
|
HNSCC from FFPE block
|
HNSCC from FFPE block
|
HNSCC from FFPE block
|
| Sample_geo_accession | GSM73682
| | Sample_status | Public on Nov 29 2005
| | Sample_submission_date | Sep 09 2005
| | Sample_last_update_date | Nov 29 2005
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen RNeasy Mini Kit (Qiagen, Valencia, CA)
| | Sample_label_ch1 | ENZO BioArray High Yield RNA Transcript Labeling Kit (Affymetrix, Santa Clara, CA)
| | Sample_data_processing | quantile normalization of CEL file, PDNN (PerfectMatch) estimation, log2 transformation
| | Sample_platform_id | GPL570
| | Sample_contact_name | Christine,H.,Chung
| | Sample_contact_email | christine.chung@vanderbilt.edu
| | Sample_contact_phone | 615-322-4967
| | Sample_contact_fax | 615343-7602
| | Sample_contact_laboratory | Chung
| | Sample_contact_department | Internal Medicine
| | Sample_contact_institute | Vanderbilt University
| | Sample_contact_address | 777 PRB
| | Sample_contact_city | Nashville
| | Sample_contact_state | TN
| | Sample_contact_zip/postal_code | 37232-6307
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM73nnn/GSM73682/suppl/GSM73682.CEL.gz
| | Sample_series_id | GSE3292
| | Sample_data_row_count | 54675
| | |
|
GSM73683 | GPL570 |
|
VU HNSCCV300520
|
HNSCC from FFPE block
|
HNSCC from FFPE block
|
HNSCC from FFPE block
|
| Sample_geo_accession | GSM73683
| | Sample_status | Public on Nov 29 2005
| | Sample_submission_date | Sep 09 2005
| | Sample_last_update_date | Nov 29 2005
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen RNeasy Mini Kit (Qiagen, Valencia, CA)
| | Sample_label_ch1 | ENZO BioArray High Yield RNA Transcript Labeling Kit (Affymetrix, Santa Clara, CA)
| | Sample_data_processing | quantile normalization of CEL file, PDNN (PerfectMatch) estimation, log2 transformation
| | Sample_platform_id | GPL570
| | Sample_contact_name | Christine,H.,Chung
| | Sample_contact_email | christine.chung@vanderbilt.edu
| | Sample_contact_phone | 615-322-4967
| | Sample_contact_fax | 615343-7602
| | Sample_contact_laboratory | Chung
| | Sample_contact_department | Internal Medicine
| | Sample_contact_institute | Vanderbilt University
| | Sample_contact_address | 777 PRB
| | Sample_contact_city | Nashville
| | Sample_contact_state | TN
| | Sample_contact_zip/postal_code | 37232-6307
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM73nnn/GSM73683/suppl/GSM73683.CEL.gz
| | Sample_series_id | GSE3292
| | Sample_data_row_count | 54675
| | |
|
GSM73684 | GPL570 |
|
UNC HNSCC01-0394
|
HNSCC from FFPE block
|
HNSCC from FFPE block
|
HNSCC from FFPE block
|
| Sample_geo_accession | GSM73684
| | Sample_status | Public on Nov 29 2005
| | Sample_submission_date | Sep 09 2005
| | Sample_last_update_date | Nov 29 2005
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen RNeasy Mini Kit (Qiagen, Valencia, CA)
| | Sample_label_ch1 | ENZO BioArray High Yield RNA Transcript Labeling Kit (Affymetrix, Santa Clara, CA)
| | Sample_data_processing | quantile normalization of CEL file, PDNN (PerfectMatch) estimation, log2 transformation
| | Sample_platform_id | GPL570
| | Sample_contact_name | Christine,H.,Chung
| | Sample_contact_email | christine.chung@vanderbilt.edu
| | Sample_contact_phone | 615-322-4967
| | Sample_contact_fax | 615343-7602
| | Sample_contact_laboratory | Chung
| | Sample_contact_department | Internal Medicine
| | Sample_contact_institute | Vanderbilt University
| | Sample_contact_address | 777 PRB
| | Sample_contact_city | Nashville
| | Sample_contact_state | TN
| | Sample_contact_zip/postal_code | 37232-6307
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM73nnn/GSM73684/suppl/GSM73684.CEL.gz
| | Sample_series_id | GSE3292
| | Sample_data_row_count | 54675
| | |
|
GSM73685 | GPL570 |
|
UNC HNSCC02-0387
|
HNSCC from FFPE block
|
HNSCC from FFPE block
|
HNSCC from FFPE block
|
| Sample_geo_accession | GSM73685
| | Sample_status | Public on Nov 29 2005
| | Sample_submission_date | Sep 09 2005
| | Sample_last_update_date | Nov 29 2005
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen RNeasy Mini Kit (Qiagen, Valencia, CA)
| | Sample_label_ch1 | ENZO BioArray High Yield RNA Transcript Labeling Kit (Affymetrix, Santa Clara, CA)
| | Sample_data_processing | quantile normalization of CEL file, PDNN (PerfectMatch) estimation, log2 transformation
| | Sample_platform_id | GPL570
| | Sample_contact_name | Christine,H.,Chung
| | Sample_contact_email | christine.chung@vanderbilt.edu
| | Sample_contact_phone | 615-322-4967
| | Sample_contact_fax | 615343-7602
| | Sample_contact_laboratory | Chung
| | Sample_contact_department | Internal Medicine
| | Sample_contact_institute | Vanderbilt University
| | Sample_contact_address | 777 PRB
| | Sample_contact_city | Nashville
| | Sample_contact_state | TN
| | Sample_contact_zip/postal_code | 37232-6307
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM73nnn/GSM73685/suppl/GSM73685.CEL.gz
| | Sample_series_id | GSE3292
| | Sample_data_row_count | 54675
| | |
|
GSM73686 | GPL570 |
|
UNC HNSCC02-0458
|
HNSCC from FFPE block
|
HNSCC from FFPE block
|
HNSCC from FFPE block
|
| Sample_geo_accession | GSM73686
| | Sample_status | Public on Nov 29 2005
| | Sample_submission_date | Sep 09 2005
| | Sample_last_update_date | Nov 29 2005
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen RNeasy Mini Kit (Qiagen, Valencia, CA)
| | Sample_label_ch1 | ENZO BioArray High Yield RNA Transcript Labeling Kit (Affymetrix, Santa Clara, CA)
| | Sample_data_processing | quantile normalization of CEL file, PDNN (PerfectMatch) estimation, log2 transformation
| | Sample_platform_id | GPL570
| | Sample_contact_name | Christine,H.,Chung
| | Sample_contact_email | christine.chung@vanderbilt.edu
| | Sample_contact_phone | 615-322-4967
| | Sample_contact_fax | 615343-7602
| | Sample_contact_laboratory | Chung
| | Sample_contact_department | Internal Medicine
| | Sample_contact_institute | Vanderbilt University
| | Sample_contact_address | 777 PRB
| | Sample_contact_city | Nashville
| | Sample_contact_state | TN
| | Sample_contact_zip/postal_code | 37232-6307
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM73nnn/GSM73686/suppl/GSM73686.CEL.gz
| | Sample_series_id | GSE3292
| | Sample_data_row_count | 54675
| | |
|
GSM73687 | GPL570 |
|
UNC HNSCC02-0478
|
HNSCC from FFPE block
|
HNSCC from FFPE block
|
HNSCC from FFPE block
|
| Sample_geo_accession | GSM73687
| | Sample_status | Public on Nov 29 2005
| | Sample_submission_date | Sep 09 2005
| | Sample_last_update_date | Nov 29 2005
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen RNeasy Mini Kit (Qiagen, Valencia, CA)
| | Sample_label_ch1 | ENZO BioArray High Yield RNA Transcript Labeling Kit (Affymetrix, Santa Clara, CA)
| | Sample_data_processing | quantile normalization of CEL file, PDNN (PerfectMatch) estimation, log2 transformation
| | Sample_platform_id | GPL570
| | Sample_contact_name | Christine,H.,Chung
| | Sample_contact_email | christine.chung@vanderbilt.edu
| | Sample_contact_phone | 615-322-4967
| | Sample_contact_fax | 615343-7602
| | Sample_contact_laboratory | Chung
| | Sample_contact_department | Internal Medicine
| | Sample_contact_institute | Vanderbilt University
| | Sample_contact_address | 777 PRB
| | Sample_contact_city | Nashville
| | Sample_contact_state | TN
| | Sample_contact_zip/postal_code | 37232-6307
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM73nnn/GSM73687/suppl/GSM73687.CEL.gz
| | Sample_series_id | GSE3292
| | Sample_data_row_count | 54675
| | |
|
GSM73688 | GPL570 |
|
UNC HNSCC97-0108
|
HNSCC from FFPE block
|
HNSCC from FFPE block
|
HNSCC from FFPE block
|
| Sample_geo_accession | GSM73688
| | Sample_status | Public on Nov 29 2005
| | Sample_submission_date | Sep 09 2005
| | Sample_last_update_date | Nov 29 2005
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen RNeasy Mini Kit (Qiagen, Valencia, CA)
| | Sample_label_ch1 | ENZO BioArray High Yield RNA Transcript Labeling Kit (Affymetrix, Santa Clara, CA)
| | Sample_data_processing | quantile normalization of CEL file, PDNN (PerfectMatch) estimation, log2 transformation
| | Sample_platform_id | GPL570
| | Sample_contact_name | Christine,H.,Chung
| | Sample_contact_email | christine.chung@vanderbilt.edu
| | Sample_contact_phone | 615-322-4967
| | Sample_contact_fax | 615343-7602
| | Sample_contact_laboratory | Chung
| | Sample_contact_department | Internal Medicine
| | Sample_contact_institute | Vanderbilt University
| | Sample_contact_address | 777 PRB
| | Sample_contact_city | Nashville
| | Sample_contact_state | TN
| | Sample_contact_zip/postal_code | 37232-6307
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM73nnn/GSM73688/suppl/GSM73688.CEL.gz
| | Sample_series_id | GSE3292
| | Sample_data_row_count | 54675
| | |
|
| |
| |
Make groups for comparisons |
(2 groups will be compared at a time) |
|
| Select GSMs and click on "Add groups" |
Enter the group name here: |
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