Search results for the GEO ID: GSE32962  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM816393 | GPL570 |
|
MLL-rearranged infant ALL in vitro resistant to prednisolone 1
|
Primary infant ALL cells at diagnosis (untreated) (>90% blasts)
|
disease state: Precursor B-cell acute lymphoblastic leukemia (ALL)
cell type: Primary infant ALL cells at diagnosis (untreated) (>90% blasts)
genotype: MLL-rearranged
age: < 1 year of age
prednisolone sensitivity: resistant
|
res_1
Gene expression profiling data (HU133plus2.0) MLL-rearranged infant ALL cels
|
| Sample_geo_accession | GSM816393
| | Sample_status | Public on Oct 13 2011
| | Sample_submission_date | Oct 13 2011
| | Sample_last_update_date | Oct 13 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Primary ALL samples were obtained at diagnosis (before treatment) and processed within 24 hours after sampling. All samples contained >90% leukemic blasts.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted form leukemic cells using TRIzol reagent (Invitrogen) according to the manufacturer's protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Fragmented cRNA was hybridized to Affymetrix HU133plus 2.0 microarrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing = The CEL files represent the raw (unscaled; scaling factor | 1) gene expression data. Raw (unscaled) array data was collectively normalized using variance-stabilizing normalization (VSN), performed in the statistical environment R (version 2.10.1) using Bioconductor packages.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jill,,Spijkers-Hagelstein
| | Sample_contact_email | j.hagelstein@erasmusmc.nl
| | Sample_contact_phone | +31107043951
| | Sample_contact_department | Pediatric Oncology
| | Sample_contact_institute | ErasmusMC - Sophia's Childrens Hospital
| | Sample_contact_address | Dr Molewaterplein 50
| | Sample_contact_city | Rotterdam
| | Sample_contact_zip/postal_code | 3015 GE
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM816nnn/GSM816393/suppl/GSM816393.CEL.gz
| | Sample_series_id | GSE32962
| | Sample_data_row_count | 54517
| | |
|
GSM816394 | GPL570 |
|
MLL-rearranged infant ALL in vitro resistant to prednisolone 2
|
Primary infant ALL cells at diagnosis (untreated) (>90% blasts)
|
disease state: Precursor B-cell acute lymphoblastic leukemia (ALL)
cell type: Primary infant ALL cells at diagnosis (untreated) (>90% blasts)
genotype: MLL-rearranged
age: < 1 year of age
prednisolone sensitivity: resistant
|
res_2
Gene expression profiling data (HU133plus2.0) MLL-rearranged infant ALL cels
|
| Sample_geo_accession | GSM816394
| | Sample_status | Public on Oct 13 2011
| | Sample_submission_date | Oct 13 2011
| | Sample_last_update_date | Oct 13 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Primary ALL samples were obtained at diagnosis (before treatment) and processed within 24 hours after sampling. All samples contained >90% leukemic blasts.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted form leukemic cells using TRIzol reagent (Invitrogen) according to the manufacturer's protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Fragmented cRNA was hybridized to Affymetrix HU133plus 2.0 microarrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing = The CEL files represent the raw (unscaled; scaling factor | 1) gene expression data. Raw (unscaled) array data was collectively normalized using variance-stabilizing normalization (VSN), performed in the statistical environment R (version 2.10.1) using Bioconductor packages.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jill,,Spijkers-Hagelstein
| | Sample_contact_email | j.hagelstein@erasmusmc.nl
| | Sample_contact_phone | +31107043951
| | Sample_contact_department | Pediatric Oncology
| | Sample_contact_institute | ErasmusMC - Sophia's Childrens Hospital
| | Sample_contact_address | Dr Molewaterplein 50
| | Sample_contact_city | Rotterdam
| | Sample_contact_zip/postal_code | 3015 GE
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM816nnn/GSM816394/suppl/GSM816394.CEL.gz
| | Sample_series_id | GSE32962
| | Sample_data_row_count | 54517
| | |
|
GSM816395 | GPL570 |
|
MLL-rearranged infant ALL in vitro resistant to prednisolone 3
|
Primary infant ALL cells at diagnosis (untreated) (>90% blasts)
|
disease state: Precursor B-cell acute lymphoblastic leukemia (ALL)
cell type: Primary infant ALL cells at diagnosis (untreated) (>90% blasts)
genotype: MLL-rearranged
age: < 1 year of age
prednisolone sensitivity: resistant
|
res_3
Gene expression profiling data (HU133plus2.0) MLL-rearranged infant ALL cels
|
| Sample_geo_accession | GSM816395
| | Sample_status | Public on Oct 13 2011
| | Sample_submission_date | Oct 13 2011
| | Sample_last_update_date | Oct 13 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Primary ALL samples were obtained at diagnosis (before treatment) and processed within 24 hours after sampling. All samples contained >90% leukemic blasts.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted form leukemic cells using TRIzol reagent (Invitrogen) according to the manufacturer's protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Fragmented cRNA was hybridized to Affymetrix HU133plus 2.0 microarrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing = The CEL files represent the raw (unscaled; scaling factor | 1) gene expression data. Raw (unscaled) array data was collectively normalized using variance-stabilizing normalization (VSN), performed in the statistical environment R (version 2.10.1) using Bioconductor packages.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jill,,Spijkers-Hagelstein
| | Sample_contact_email | j.hagelstein@erasmusmc.nl
| | Sample_contact_phone | +31107043951
| | Sample_contact_department | Pediatric Oncology
| | Sample_contact_institute | ErasmusMC - Sophia's Childrens Hospital
| | Sample_contact_address | Dr Molewaterplein 50
| | Sample_contact_city | Rotterdam
| | Sample_contact_zip/postal_code | 3015 GE
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM816nnn/GSM816395/suppl/GSM816395.CEL.gz
| | Sample_series_id | GSE32962
| | Sample_data_row_count | 54517
| | |
|
GSM816396 | GPL570 |
|
MLL-rearranged infant ALL in vitro resistant to prednisolone 4
|
Primary infant ALL cells at diagnosis (untreated) (>90% blasts)
|
disease state: Precursor B-cell acute lymphoblastic leukemia (ALL)
cell type: Primary infant ALL cells at diagnosis (untreated) (>90% blasts)
genotype: MLL-rearranged
age: < 1 year of age
prednisolone sensitivity: resistant
|
res_4
Gene expression profiling data (HU133plus2.0) MLL-rearranged infant ALL cels
|
| Sample_geo_accession | GSM816396
| | Sample_status | Public on Oct 13 2011
| | Sample_submission_date | Oct 13 2011
| | Sample_last_update_date | Oct 13 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Primary ALL samples were obtained at diagnosis (before treatment) and processed within 24 hours after sampling. All samples contained >90% leukemic blasts.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted form leukemic cells using TRIzol reagent (Invitrogen) according to the manufacturer's protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Fragmented cRNA was hybridized to Affymetrix HU133plus 2.0 microarrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing = The CEL files represent the raw (unscaled; scaling factor | 1) gene expression data. Raw (unscaled) array data was collectively normalized using variance-stabilizing normalization (VSN), performed in the statistical environment R (version 2.10.1) using Bioconductor packages.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jill,,Spijkers-Hagelstein
| | Sample_contact_email | j.hagelstein@erasmusmc.nl
| | Sample_contact_phone | +31107043951
| | Sample_contact_department | Pediatric Oncology
| | Sample_contact_institute | ErasmusMC - Sophia's Childrens Hospital
| | Sample_contact_address | Dr Molewaterplein 50
| | Sample_contact_city | Rotterdam
| | Sample_contact_zip/postal_code | 3015 GE
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM816nnn/GSM816396/suppl/GSM816396.CEL.gz
| | Sample_series_id | GSE32962
| | Sample_data_row_count | 54517
| | |
|
GSM816397 | GPL570 |
|
MLL-rearranged infant ALL in vitro resistant to prednisolone 5
|
Primary infant ALL cells at diagnosis (untreated) (>90% blasts)
|
disease state: Precursor B-cell acute lymphoblastic leukemia (ALL)
cell type: Primary infant ALL cells at diagnosis (untreated) (>90% blasts)
genotype: MLL-rearranged
age: < 1 year of age
prednisolone sensitivity: resistant
|
res_5
Gene expression profiling data (HU133plus2.0) MLL-rearranged infant ALL cels
|
| Sample_geo_accession | GSM816397
| | Sample_status | Public on Oct 13 2011
| | Sample_submission_date | Oct 13 2011
| | Sample_last_update_date | Oct 13 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Primary ALL samples were obtained at diagnosis (before treatment) and processed within 24 hours after sampling. All samples contained >90% leukemic blasts.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted form leukemic cells using TRIzol reagent (Invitrogen) according to the manufacturer's protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Fragmented cRNA was hybridized to Affymetrix HU133plus 2.0 microarrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing = The CEL files represent the raw (unscaled; scaling factor | 1) gene expression data. Raw (unscaled) array data was collectively normalized using variance-stabilizing normalization (VSN), performed in the statistical environment R (version 2.10.1) using Bioconductor packages.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jill,,Spijkers-Hagelstein
| | Sample_contact_email | j.hagelstein@erasmusmc.nl
| | Sample_contact_phone | +31107043951
| | Sample_contact_department | Pediatric Oncology
| | Sample_contact_institute | ErasmusMC - Sophia's Childrens Hospital
| | Sample_contact_address | Dr Molewaterplein 50
| | Sample_contact_city | Rotterdam
| | Sample_contact_zip/postal_code | 3015 GE
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM816nnn/GSM816397/suppl/GSM816397.CEL.gz
| | Sample_series_id | GSE32962
| | Sample_data_row_count | 54517
| | |
|
GSM816398 | GPL570 |
|
MLL-rearranged infant ALL in vitro resistant to prednisolone 6
|
Primary infant ALL cells at diagnosis (untreated) (>90% blasts)
|
disease state: Precursor B-cell acute lymphoblastic leukemia (ALL)
cell type: Primary infant ALL cells at diagnosis (untreated) (>90% blasts)
genotype: MLL-rearranged
age: < 1 year of age
prednisolone sensitivity: resistant
|
res_6
Gene expression profiling data (HU133plus2.0) MLL-rearranged infant ALL cels
|
| Sample_geo_accession | GSM816398
| | Sample_status | Public on Oct 13 2011
| | Sample_submission_date | Oct 13 2011
| | Sample_last_update_date | Oct 13 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Primary ALL samples were obtained at diagnosis (before treatment) and processed within 24 hours after sampling. All samples contained >90% leukemic blasts.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted form leukemic cells using TRIzol reagent (Invitrogen) according to the manufacturer's protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Fragmented cRNA was hybridized to Affymetrix HU133plus 2.0 microarrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing = The CEL files represent the raw (unscaled; scaling factor | 1) gene expression data. Raw (unscaled) array data was collectively normalized using variance-stabilizing normalization (VSN), performed in the statistical environment R (version 2.10.1) using Bioconductor packages.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jill,,Spijkers-Hagelstein
| | Sample_contact_email | j.hagelstein@erasmusmc.nl
| | Sample_contact_phone | +31107043951
| | Sample_contact_department | Pediatric Oncology
| | Sample_contact_institute | ErasmusMC - Sophia's Childrens Hospital
| | Sample_contact_address | Dr Molewaterplein 50
| | Sample_contact_city | Rotterdam
| | Sample_contact_zip/postal_code | 3015 GE
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM816nnn/GSM816398/suppl/GSM816398.CEL.gz
| | Sample_series_id | GSE32962
| | Sample_data_row_count | 54517
| | |
|
GSM816399 | GPL570 |
|
MLL-rearranged infant ALL in vitro resistant to prednisolone 7
|
Primary infant ALL cells at diagnosis (untreated) (>90% blasts)
|
disease state: Precursor B-cell acute lymphoblastic leukemia (ALL)
cell type: Primary infant ALL cells at diagnosis (untreated) (>90% blasts)
genotype: MLL-rearranged
age: < 1 year of age
prednisolone sensitivity: resistant
|
res_7
Gene expression profiling data (HU133plus2.0) MLL-rearranged infant ALL cels
|
| Sample_geo_accession | GSM816399
| | Sample_status | Public on Oct 13 2011
| | Sample_submission_date | Oct 13 2011
| | Sample_last_update_date | Oct 13 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Primary ALL samples were obtained at diagnosis (before treatment) and processed within 24 hours after sampling. All samples contained >90% leukemic blasts.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted form leukemic cells using TRIzol reagent (Invitrogen) according to the manufacturer's protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Fragmented cRNA was hybridized to Affymetrix HU133plus 2.0 microarrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing = The CEL files represent the raw (unscaled; scaling factor | 1) gene expression data. Raw (unscaled) array data was collectively normalized using variance-stabilizing normalization (VSN), performed in the statistical environment R (version 2.10.1) using Bioconductor packages.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jill,,Spijkers-Hagelstein
| | Sample_contact_email | j.hagelstein@erasmusmc.nl
| | Sample_contact_phone | +31107043951
| | Sample_contact_department | Pediatric Oncology
| | Sample_contact_institute | ErasmusMC - Sophia's Childrens Hospital
| | Sample_contact_address | Dr Molewaterplein 50
| | Sample_contact_city | Rotterdam
| | Sample_contact_zip/postal_code | 3015 GE
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM816nnn/GSM816399/suppl/GSM816399.CEL.gz
| | Sample_series_id | GSE32962
| | Sample_data_row_count | 54517
| | |
|
GSM816400 | GPL570 |
|
MLL-rearranged infant ALL in vitro resistant to prednisolone 8
|
Primary infant ALL cells at diagnosis (untreated) (>90% blasts)
|
disease state: Precursor B-cell acute lymphoblastic leukemia (ALL)
cell type: Primary infant ALL cells at diagnosis (untreated) (>90% blasts)
genotype: MLL-rearranged
age: < 1 year of age
prednisolone sensitivity: resistant
|
res_8
Gene expression profiling data (HU133plus2.0) MLL-rearranged infant ALL cels
|
| Sample_geo_accession | GSM816400
| | Sample_status | Public on Oct 13 2011
| | Sample_submission_date | Oct 13 2011
| | Sample_last_update_date | Oct 13 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Primary ALL samples were obtained at diagnosis (before treatment) and processed within 24 hours after sampling. All samples contained >90% leukemic blasts.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted form leukemic cells using TRIzol reagent (Invitrogen) according to the manufacturer's protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Fragmented cRNA was hybridized to Affymetrix HU133plus 2.0 microarrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing = The CEL files represent the raw (unscaled; scaling factor | 1) gene expression data. Raw (unscaled) array data was collectively normalized using variance-stabilizing normalization (VSN), performed in the statistical environment R (version 2.10.1) using Bioconductor packages.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jill,,Spijkers-Hagelstein
| | Sample_contact_email | j.hagelstein@erasmusmc.nl
| | Sample_contact_phone | +31107043951
| | Sample_contact_department | Pediatric Oncology
| | Sample_contact_institute | ErasmusMC - Sophia's Childrens Hospital
| | Sample_contact_address | Dr Molewaterplein 50
| | Sample_contact_city | Rotterdam
| | Sample_contact_zip/postal_code | 3015 GE
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM816nnn/GSM816400/suppl/GSM816400.CEL.gz
| | Sample_series_id | GSE32962
| | Sample_data_row_count | 54517
| | |
|
GSM816401 | GPL570 |
|
MLL-rearranged infant ALL in vitro resistant to prednisolone 9
|
Primary infant ALL cells at diagnosis (untreated) (>90% blasts)
|
disease state: Precursor B-cell acute lymphoblastic leukemia (ALL)
cell type: Primary infant ALL cells at diagnosis (untreated) (>90% blasts)
genotype: MLL-rearranged
age: < 1 year of age
prednisolone sensitivity: resistant
|
res_9
Gene expression profiling data (HU133plus2.0) MLL-rearranged infant ALL cels
|
| Sample_geo_accession | GSM816401
| | Sample_status | Public on Oct 13 2011
| | Sample_submission_date | Oct 13 2011
| | Sample_last_update_date | Oct 13 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Primary ALL samples were obtained at diagnosis (before treatment) and processed within 24 hours after sampling. All samples contained >90% leukemic blasts.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted form leukemic cells using TRIzol reagent (Invitrogen) according to the manufacturer's protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Fragmented cRNA was hybridized to Affymetrix HU133plus 2.0 microarrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing = The CEL files represent the raw (unscaled; scaling factor | 1) gene expression data. Raw (unscaled) array data was collectively normalized using variance-stabilizing normalization (VSN), performed in the statistical environment R (version 2.10.1) using Bioconductor packages.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jill,,Spijkers-Hagelstein
| | Sample_contact_email | j.hagelstein@erasmusmc.nl
| | Sample_contact_phone | +31107043951
| | Sample_contact_department | Pediatric Oncology
| | Sample_contact_institute | ErasmusMC - Sophia's Childrens Hospital
| | Sample_contact_address | Dr Molewaterplein 50
| | Sample_contact_city | Rotterdam
| | Sample_contact_zip/postal_code | 3015 GE
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM816nnn/GSM816401/suppl/GSM816401.CEL.gz
| | Sample_series_id | GSE32962
| | Sample_data_row_count | 54517
| | |
|
GSM816402 | GPL570 |
|
MLL-rearranged infant ALL in vitro resistant to prednisolone 10
|
Primary infant ALL cells at diagnosis (untreated) (>90% blasts)
|
disease state: Precursor B-cell acute lymphoblastic leukemia (ALL)
cell type: Primary infant ALL cells at diagnosis (untreated) (>90% blasts)
genotype: MLL-rearranged
age: < 1 year of age
prednisolone sensitivity: resistant
|
res_10
Gene expression profiling data (HU133plus2.0) MLL-rearranged infant ALL cels
|
| Sample_geo_accession | GSM816402
| | Sample_status | Public on Oct 13 2011
| | Sample_submission_date | Oct 13 2011
| | Sample_last_update_date | Oct 13 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Primary ALL samples were obtained at diagnosis (before treatment) and processed within 24 hours after sampling. All samples contained >90% leukemic blasts.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted form leukemic cells using TRIzol reagent (Invitrogen) according to the manufacturer's protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Fragmented cRNA was hybridized to Affymetrix HU133plus 2.0 microarrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing = The CEL files represent the raw (unscaled; scaling factor | 1) gene expression data. Raw (unscaled) array data was collectively normalized using variance-stabilizing normalization (VSN), performed in the statistical environment R (version 2.10.1) using Bioconductor packages.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jill,,Spijkers-Hagelstein
| | Sample_contact_email | j.hagelstein@erasmusmc.nl
| | Sample_contact_phone | +31107043951
| | Sample_contact_department | Pediatric Oncology
| | Sample_contact_institute | ErasmusMC - Sophia's Childrens Hospital
| | Sample_contact_address | Dr Molewaterplein 50
| | Sample_contact_city | Rotterdam
| | Sample_contact_zip/postal_code | 3015 GE
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM816nnn/GSM816402/suppl/GSM816402.CEL.gz
| | Sample_series_id | GSE32962
| | Sample_data_row_count | 54517
| | |
|
GSM816403 | GPL570 |
|
MLL-rearranged infant ALL in vitro resistant to prednisolone 11
|
Primary infant ALL cells at diagnosis (untreated) (>90% blasts)
|
disease state: Precursor B-cell acute lymphoblastic leukemia (ALL)
cell type: Primary infant ALL cells at diagnosis (untreated) (>90% blasts)
genotype: MLL-rearranged
age: < 1 year of age
prednisolone sensitivity: resistant
|
res_11
Gene expression profiling data (HU133plus2.0) MLL-rearranged infant ALL cels
|
| Sample_geo_accession | GSM816403
| | Sample_status | Public on Oct 13 2011
| | Sample_submission_date | Oct 13 2011
| | Sample_last_update_date | Oct 13 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Primary ALL samples were obtained at diagnosis (before treatment) and processed within 24 hours after sampling. All samples contained >90% leukemic blasts.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted form leukemic cells using TRIzol reagent (Invitrogen) according to the manufacturer's protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Fragmented cRNA was hybridized to Affymetrix HU133plus 2.0 microarrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing = The CEL files represent the raw (unscaled; scaling factor | 1) gene expression data. Raw (unscaled) array data was collectively normalized using variance-stabilizing normalization (VSN), performed in the statistical environment R (version 2.10.1) using Bioconductor packages.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jill,,Spijkers-Hagelstein
| | Sample_contact_email | j.hagelstein@erasmusmc.nl
| | Sample_contact_phone | +31107043951
| | Sample_contact_department | Pediatric Oncology
| | Sample_contact_institute | ErasmusMC - Sophia's Childrens Hospital
| | Sample_contact_address | Dr Molewaterplein 50
| | Sample_contact_city | Rotterdam
| | Sample_contact_zip/postal_code | 3015 GE
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM816nnn/GSM816403/suppl/GSM816403.CEL.gz
| | Sample_series_id | GSE32962
| | Sample_data_row_count | 54517
| | |
|
GSM816404 | GPL570 |
|
MLL-rearranged infant ALL in vitro resistant to prednisolone 12
|
Primary infant ALL cells at diagnosis (untreated) (>90% blasts)
|
disease state: Precursor B-cell acute lymphoblastic leukemia (ALL)
cell type: Primary infant ALL cells at diagnosis (untreated) (>90% blasts)
genotype: MLL-rearranged
age: < 1 year of age
prednisolone sensitivity: resistant
|
res_12
Gene expression profiling data (HU133plus2.0) MLL-rearranged infant ALL cels
|
| Sample_geo_accession | GSM816404
| | Sample_status | Public on Oct 13 2011
| | Sample_submission_date | Oct 13 2011
| | Sample_last_update_date | Oct 13 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Primary ALL samples were obtained at diagnosis (before treatment) and processed within 24 hours after sampling. All samples contained >90% leukemic blasts.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted form leukemic cells using TRIzol reagent (Invitrogen) according to the manufacturer's protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Fragmented cRNA was hybridized to Affymetrix HU133plus 2.0 microarrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing = The CEL files represent the raw (unscaled; scaling factor | 1) gene expression data. Raw (unscaled) array data was collectively normalized using variance-stabilizing normalization (VSN), performed in the statistical environment R (version 2.10.1) using Bioconductor packages.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jill,,Spijkers-Hagelstein
| | Sample_contact_email | j.hagelstein@erasmusmc.nl
| | Sample_contact_phone | +31107043951
| | Sample_contact_department | Pediatric Oncology
| | Sample_contact_institute | ErasmusMC - Sophia's Childrens Hospital
| | Sample_contact_address | Dr Molewaterplein 50
| | Sample_contact_city | Rotterdam
| | Sample_contact_zip/postal_code | 3015 GE
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM816nnn/GSM816404/suppl/GSM816404.CEL.gz
| | Sample_series_id | GSE32962
| | Sample_data_row_count | 54517
| | |
|
GSM816405 | GPL570 |
|
MLL-rearranged infant ALL in vitro resistant to prednisolone 13
|
Primary infant ALL cells at diagnosis (untreated) (>90% blasts)
|
disease state: Precursor B-cell acute lymphoblastic leukemia (ALL)
cell type: Primary infant ALL cells at diagnosis (untreated) (>90% blasts)
genotype: MLL-rearranged
age: < 1 year of age
prednisolone sensitivity: resistant
|
res_13
Gene expression profiling data (HU133plus2.0) MLL-rearranged infant ALL cels
|
| Sample_geo_accession | GSM816405
| | Sample_status | Public on Oct 13 2011
| | Sample_submission_date | Oct 13 2011
| | Sample_last_update_date | Oct 13 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Primary ALL samples were obtained at diagnosis (before treatment) and processed within 24 hours after sampling. All samples contained >90% leukemic blasts.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted form leukemic cells using TRIzol reagent (Invitrogen) according to the manufacturer's protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Fragmented cRNA was hybridized to Affymetrix HU133plus 2.0 microarrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing = The CEL files represent the raw (unscaled; scaling factor | 1) gene expression data. Raw (unscaled) array data was collectively normalized using variance-stabilizing normalization (VSN), performed in the statistical environment R (version 2.10.1) using Bioconductor packages.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jill,,Spijkers-Hagelstein
| | Sample_contact_email | j.hagelstein@erasmusmc.nl
| | Sample_contact_phone | +31107043951
| | Sample_contact_department | Pediatric Oncology
| | Sample_contact_institute | ErasmusMC - Sophia's Childrens Hospital
| | Sample_contact_address | Dr Molewaterplein 50
| | Sample_contact_city | Rotterdam
| | Sample_contact_zip/postal_code | 3015 GE
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM816nnn/GSM816405/suppl/GSM816405.CEL.gz
| | Sample_series_id | GSE32962
| | Sample_data_row_count | 54517
| | |
|
GSM816406 | GPL570 |
|
MLL-rearranged infant ALL in vitro resistant to prednisolone 14
|
Primary infant ALL cells at diagnosis (untreated) (>90% blasts)
|
disease state: Precursor B-cell acute lymphoblastic leukemia (ALL)
cell type: Primary infant ALL cells at diagnosis (untreated) (>90% blasts)
genotype: MLL-rearranged
age: < 1 year of age
prednisolone sensitivity: resistant
|
res_14
Gene expression profiling data (HU133plus2.0) MLL-rearranged infant ALL cels
|
| Sample_geo_accession | GSM816406
| | Sample_status | Public on Oct 13 2011
| | Sample_submission_date | Oct 13 2011
| | Sample_last_update_date | Oct 13 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Primary ALL samples were obtained at diagnosis (before treatment) and processed within 24 hours after sampling. All samples contained >90% leukemic blasts.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted form leukemic cells using TRIzol reagent (Invitrogen) according to the manufacturer's protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Fragmented cRNA was hybridized to Affymetrix HU133plus 2.0 microarrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing = The CEL files represent the raw (unscaled; scaling factor | 1) gene expression data. Raw (unscaled) array data was collectively normalized using variance-stabilizing normalization (VSN), performed in the statistical environment R (version 2.10.1) using Bioconductor packages.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jill,,Spijkers-Hagelstein
| | Sample_contact_email | j.hagelstein@erasmusmc.nl
| | Sample_contact_phone | +31107043951
| | Sample_contact_department | Pediatric Oncology
| | Sample_contact_institute | ErasmusMC - Sophia's Childrens Hospital
| | Sample_contact_address | Dr Molewaterplein 50
| | Sample_contact_city | Rotterdam
| | Sample_contact_zip/postal_code | 3015 GE
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM816nnn/GSM816406/suppl/GSM816406.CEL.gz
| | Sample_series_id | GSE32962
| | Sample_data_row_count | 54517
| | |
|
GSM816407 | GPL570 |
|
MLL-rearranged infant ALL in vitro resistant to prednisolone 15
|
Primary infant ALL cells at diagnosis (untreated) (>90% blasts)
|
disease state: Precursor B-cell acute lymphoblastic leukemia (ALL)
cell type: Primary infant ALL cells at diagnosis (untreated) (>90% blasts)
genotype: MLL-rearranged
age: < 1 year of age
prednisolone sensitivity: resistant
|
res_15
Gene expression profiling data (HU133plus2.0) MLL-rearranged infant ALL cels
|
| Sample_geo_accession | GSM816407
| | Sample_status | Public on Oct 13 2011
| | Sample_submission_date | Oct 13 2011
| | Sample_last_update_date | Oct 13 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Primary ALL samples were obtained at diagnosis (before treatment) and processed within 24 hours after sampling. All samples contained >90% leukemic blasts.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted form leukemic cells using TRIzol reagent (Invitrogen) according to the manufacturer's protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Fragmented cRNA was hybridized to Affymetrix HU133plus 2.0 microarrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing = The CEL files represent the raw (unscaled; scaling factor | 1) gene expression data. Raw (unscaled) array data was collectively normalized using variance-stabilizing normalization (VSN), performed in the statistical environment R (version 2.10.1) using Bioconductor packages.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jill,,Spijkers-Hagelstein
| | Sample_contact_email | j.hagelstein@erasmusmc.nl
| | Sample_contact_phone | +31107043951
| | Sample_contact_department | Pediatric Oncology
| | Sample_contact_institute | ErasmusMC - Sophia's Childrens Hospital
| | Sample_contact_address | Dr Molewaterplein 50
| | Sample_contact_city | Rotterdam
| | Sample_contact_zip/postal_code | 3015 GE
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM816nnn/GSM816407/suppl/GSM816407.CEL.gz
| | Sample_series_id | GSE32962
| | Sample_data_row_count | 54517
| | |
|
GSM816408 | GPL570 |
|
MLL-rearranged infant ALL in vitro resistant to prednisolone 16
|
Primary infant ALL cells at diagnosis (untreated) (>90% blasts)
|
disease state: Precursor B-cell acute lymphoblastic leukemia (ALL)
cell type: Primary infant ALL cells at diagnosis (untreated) (>90% blasts)
genotype: MLL-rearranged
age: < 1 year of age
prednisolone sensitivity: resistant
|
res_16
Gene expression profiling data (HU133plus2.0) MLL-rearranged infant ALL cels
|
| Sample_geo_accession | GSM816408
| | Sample_status | Public on Oct 13 2011
| | Sample_submission_date | Oct 13 2011
| | Sample_last_update_date | Oct 13 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Primary ALL samples were obtained at diagnosis (before treatment) and processed within 24 hours after sampling. All samples contained >90% leukemic blasts.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted form leukemic cells using TRIzol reagent (Invitrogen) according to the manufacturer's protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Fragmented cRNA was hybridized to Affymetrix HU133plus 2.0 microarrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing = The CEL files represent the raw (unscaled; scaling factor | 1) gene expression data. Raw (unscaled) array data was collectively normalized using variance-stabilizing normalization (VSN), performed in the statistical environment R (version 2.10.1) using Bioconductor packages.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jill,,Spijkers-Hagelstein
| | Sample_contact_email | j.hagelstein@erasmusmc.nl
| | Sample_contact_phone | +31107043951
| | Sample_contact_department | Pediatric Oncology
| | Sample_contact_institute | ErasmusMC - Sophia's Childrens Hospital
| | Sample_contact_address | Dr Molewaterplein 50
| | Sample_contact_city | Rotterdam
| | Sample_contact_zip/postal_code | 3015 GE
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM816nnn/GSM816408/suppl/GSM816408.CEL.gz
| | Sample_series_id | GSE32962
| | Sample_data_row_count | 54517
| | |
|
GSM816409 | GPL570 |
|
MLL-rearranged infant ALL in vitro resistant to prednisolone 17
|
Primary infant ALL cells at diagnosis (untreated) (>90% blasts)
|
disease state: Precursor B-cell acute lymphoblastic leukemia (ALL)
cell type: Primary infant ALL cells at diagnosis (untreated) (>90% blasts)
genotype: MLL-rearranged
age: < 1 year of age
prednisolone sensitivity: resistant
|
res_17
Gene expression profiling data (HU133plus2.0) MLL-rearranged infant ALL cels
|
| Sample_geo_accession | GSM816409
| | Sample_status | Public on Oct 13 2011
| | Sample_submission_date | Oct 13 2011
| | Sample_last_update_date | Oct 13 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Primary ALL samples were obtained at diagnosis (before treatment) and processed within 24 hours after sampling. All samples contained >90% leukemic blasts.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted form leukemic cells using TRIzol reagent (Invitrogen) according to the manufacturer's protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Fragmented cRNA was hybridized to Affymetrix HU133plus 2.0 microarrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing = The CEL files represent the raw (unscaled; scaling factor | 1) gene expression data. Raw (unscaled) array data was collectively normalized using variance-stabilizing normalization (VSN), performed in the statistical environment R (version 2.10.1) using Bioconductor packages.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jill,,Spijkers-Hagelstein
| | Sample_contact_email | j.hagelstein@erasmusmc.nl
| | Sample_contact_phone | +31107043951
| | Sample_contact_department | Pediatric Oncology
| | Sample_contact_institute | ErasmusMC - Sophia's Childrens Hospital
| | Sample_contact_address | Dr Molewaterplein 50
| | Sample_contact_city | Rotterdam
| | Sample_contact_zip/postal_code | 3015 GE
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM816nnn/GSM816409/suppl/GSM816409.CEL.gz
| | Sample_series_id | GSE32962
| | Sample_data_row_count | 54517
| | |
|
GSM816410 | GPL570 |
|
MLL-rearranged infant ALL in vitro resistant to prednisolone 18
|
Primary infant ALL cells at diagnosis (untreated) (>90% blasts)
|
disease state: Precursor B-cell acute lymphoblastic leukemia (ALL)
cell type: Primary infant ALL cells at diagnosis (untreated) (>90% blasts)
genotype: MLL-rearranged
age: < 1 year of age
prednisolone sensitivity: resistant
|
res_18
Gene expression profiling data (HU133plus2.0) MLL-rearranged infant ALL cels
|
| Sample_geo_accession | GSM816410
| | Sample_status | Public on Oct 13 2011
| | Sample_submission_date | Oct 13 2011
| | Sample_last_update_date | Oct 13 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Primary ALL samples were obtained at diagnosis (before treatment) and processed within 24 hours after sampling. All samples contained >90% leukemic blasts.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted form leukemic cells using TRIzol reagent (Invitrogen) according to the manufacturer's protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Fragmented cRNA was hybridized to Affymetrix HU133plus 2.0 microarrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing = The CEL files represent the raw (unscaled; scaling factor | 1) gene expression data. Raw (unscaled) array data was collectively normalized using variance-stabilizing normalization (VSN), performed in the statistical environment R (version 2.10.1) using Bioconductor packages.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jill,,Spijkers-Hagelstein
| | Sample_contact_email | j.hagelstein@erasmusmc.nl
| | Sample_contact_phone | +31107043951
| | Sample_contact_department | Pediatric Oncology
| | Sample_contact_institute | ErasmusMC - Sophia's Childrens Hospital
| | Sample_contact_address | Dr Molewaterplein 50
| | Sample_contact_city | Rotterdam
| | Sample_contact_zip/postal_code | 3015 GE
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM816nnn/GSM816410/suppl/GSM816410.CEL.gz
| | Sample_series_id | GSE32962
| | Sample_data_row_count | 54517
| | |
|
GSM816411 | GPL570 |
|
MLL-rearranged infant ALL in vitro resistant to prednisolone 19
|
Primary infant ALL cells at diagnosis (untreated) (>90% blasts)
|
disease state: Precursor B-cell acute lymphoblastic leukemia (ALL)
cell type: Primary infant ALL cells at diagnosis (untreated) (>90% blasts)
genotype: MLL-rearranged
age: < 1 year of age
prednisolone sensitivity: resistant
|
res_19
Gene expression profiling data (HU133plus2.0) MLL-rearranged infant ALL cels
|
| Sample_geo_accession | GSM816411
| | Sample_status | Public on Oct 13 2011
| | Sample_submission_date | Oct 13 2011
| | Sample_last_update_date | Oct 13 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Primary ALL samples were obtained at diagnosis (before treatment) and processed within 24 hours after sampling. All samples contained >90% leukemic blasts.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted form leukemic cells using TRIzol reagent (Invitrogen) according to the manufacturer's protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Fragmented cRNA was hybridized to Affymetrix HU133plus 2.0 microarrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing = The CEL files represent the raw (unscaled; scaling factor | 1) gene expression data. Raw (unscaled) array data was collectively normalized using variance-stabilizing normalization (VSN), performed in the statistical environment R (version 2.10.1) using Bioconductor packages.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jill,,Spijkers-Hagelstein
| | Sample_contact_email | j.hagelstein@erasmusmc.nl
| | Sample_contact_phone | +31107043951
| | Sample_contact_department | Pediatric Oncology
| | Sample_contact_institute | ErasmusMC - Sophia's Childrens Hospital
| | Sample_contact_address | Dr Molewaterplein 50
| | Sample_contact_city | Rotterdam
| | Sample_contact_zip/postal_code | 3015 GE
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM816nnn/GSM816411/suppl/GSM816411.CEL.gz
| | Sample_series_id | GSE32962
| | Sample_data_row_count | 54517
| | |
|
GSM816412 | GPL570 |
|
MLL-rearranged infant ALL in vitro resistant to prednisolone 20
|
Primary infant ALL cells at diagnosis (untreated) (>90% blasts)
|
disease state: Precursor B-cell acute lymphoblastic leukemia (ALL)
cell type: Primary infant ALL cells at diagnosis (untreated) (>90% blasts)
genotype: MLL-rearranged
age: < 1 year of age
prednisolone sensitivity: resistant
|
res_20
Gene expression profiling data (HU133plus2.0) MLL-rearranged infant ALL cels
|
| Sample_geo_accession | GSM816412
| | Sample_status | Public on Oct 13 2011
| | Sample_submission_date | Oct 13 2011
| | Sample_last_update_date | Oct 13 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Primary ALL samples were obtained at diagnosis (before treatment) and processed within 24 hours after sampling. All samples contained >90% leukemic blasts.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted form leukemic cells using TRIzol reagent (Invitrogen) according to the manufacturer's protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Fragmented cRNA was hybridized to Affymetrix HU133plus 2.0 microarrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing = The CEL files represent the raw (unscaled; scaling factor | 1) gene expression data. Raw (unscaled) array data was collectively normalized using variance-stabilizing normalization (VSN), performed in the statistical environment R (version 2.10.1) using Bioconductor packages.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jill,,Spijkers-Hagelstein
| | Sample_contact_email | j.hagelstein@erasmusmc.nl
| | Sample_contact_phone | +31107043951
| | Sample_contact_department | Pediatric Oncology
| | Sample_contact_institute | ErasmusMC - Sophia's Childrens Hospital
| | Sample_contact_address | Dr Molewaterplein 50
| | Sample_contact_city | Rotterdam
| | Sample_contact_zip/postal_code | 3015 GE
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM816nnn/GSM816412/suppl/GSM816412.CEL.gz
| | Sample_series_id | GSE32962
| | Sample_data_row_count | 54517
| | |
|
GSM816413 | GPL570 |
|
MLL-rearranged infant ALL in vitro resistant to prednisolone 21
|
Primary infant ALL cells at diagnosis (untreated) (>90% blasts)
|
disease state: Precursor B-cell acute lymphoblastic leukemia (ALL)
cell type: Primary infant ALL cells at diagnosis (untreated) (>90% blasts)
genotype: MLL-rearranged
age: < 1 year of age
prednisolone sensitivity: resistant
|
res_21
Gene expression profiling data (HU133plus2.0) MLL-rearranged infant ALL cels
|
| Sample_geo_accession | GSM816413
| | Sample_status | Public on Oct 13 2011
| | Sample_submission_date | Oct 13 2011
| | Sample_last_update_date | Oct 13 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Primary ALL samples were obtained at diagnosis (before treatment) and processed within 24 hours after sampling. All samples contained >90% leukemic blasts.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted form leukemic cells using TRIzol reagent (Invitrogen) according to the manufacturer's protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Fragmented cRNA was hybridized to Affymetrix HU133plus 2.0 microarrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing = The CEL files represent the raw (unscaled; scaling factor | 1) gene expression data. Raw (unscaled) array data was collectively normalized using variance-stabilizing normalization (VSN), performed in the statistical environment R (version 2.10.1) using Bioconductor packages.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jill,,Spijkers-Hagelstein
| | Sample_contact_email | j.hagelstein@erasmusmc.nl
| | Sample_contact_phone | +31107043951
| | Sample_contact_department | Pediatric Oncology
| | Sample_contact_institute | ErasmusMC - Sophia's Childrens Hospital
| | Sample_contact_address | Dr Molewaterplein 50
| | Sample_contact_city | Rotterdam
| | Sample_contact_zip/postal_code | 3015 GE
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM816nnn/GSM816413/suppl/GSM816413.CEL.gz
| | Sample_series_id | GSE32962
| | Sample_data_row_count | 54517
| | |
|
GSM816414 | GPL570 |
|
MLL-rearranged infant ALL in vitro resistant to prednisolone 22
|
Primary infant ALL cells at diagnosis (untreated) (>90% blasts)
|
disease state: Precursor B-cell acute lymphoblastic leukemia (ALL)
cell type: Primary infant ALL cells at diagnosis (untreated) (>90% blasts)
genotype: MLL-rearranged
age: < 1 year of age
prednisolone sensitivity: resistant
|
res_22
Gene expression profiling data (HU133plus2.0) MLL-rearranged infant ALL cels
|
| Sample_geo_accession | GSM816414
| | Sample_status | Public on Oct 13 2011
| | Sample_submission_date | Oct 13 2011
| | Sample_last_update_date | Oct 13 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Primary ALL samples were obtained at diagnosis (before treatment) and processed within 24 hours after sampling. All samples contained >90% leukemic blasts.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted form leukemic cells using TRIzol reagent (Invitrogen) according to the manufacturer's protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Fragmented cRNA was hybridized to Affymetrix HU133plus 2.0 microarrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing = The CEL files represent the raw (unscaled; scaling factor | 1) gene expression data. Raw (unscaled) array data was collectively normalized using variance-stabilizing normalization (VSN), performed in the statistical environment R (version 2.10.1) using Bioconductor packages.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jill,,Spijkers-Hagelstein
| | Sample_contact_email | j.hagelstein@erasmusmc.nl
| | Sample_contact_phone | +31107043951
| | Sample_contact_department | Pediatric Oncology
| | Sample_contact_institute | ErasmusMC - Sophia's Childrens Hospital
| | Sample_contact_address | Dr Molewaterplein 50
| | Sample_contact_city | Rotterdam
| | Sample_contact_zip/postal_code | 3015 GE
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM816nnn/GSM816414/suppl/GSM816414.CEL.gz
| | Sample_series_id | GSE32962
| | Sample_data_row_count | 54517
| | |
|
GSM816415 | GPL570 |
|
MLL-rearranged infant ALL in vitro resistant to prednisolone 23
|
Primary infant ALL cells at diagnosis (untreated) (>90% blasts)
|
disease state: Precursor B-cell acute lymphoblastic leukemia (ALL)
cell type: Primary infant ALL cells at diagnosis (untreated) (>90% blasts)
genotype: MLL-rearranged
age: < 1 year of age
prednisolone sensitivity: resistant
|
res_23
Gene expression profiling data (HU133plus2.0) MLL-rearranged infant ALL cels
|
| Sample_geo_accession | GSM816415
| | Sample_status | Public on Oct 13 2011
| | Sample_submission_date | Oct 13 2011
| | Sample_last_update_date | Oct 13 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Primary ALL samples were obtained at diagnosis (before treatment) and processed within 24 hours after sampling. All samples contained >90% leukemic blasts.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted form leukemic cells using TRIzol reagent (Invitrogen) according to the manufacturer's protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Fragmented cRNA was hybridized to Affymetrix HU133plus 2.0 microarrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing = The CEL files represent the raw (unscaled; scaling factor | 1) gene expression data. Raw (unscaled) array data was collectively normalized using variance-stabilizing normalization (VSN), performed in the statistical environment R (version 2.10.1) using Bioconductor packages.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jill,,Spijkers-Hagelstein
| | Sample_contact_email | j.hagelstein@erasmusmc.nl
| | Sample_contact_phone | +31107043951
| | Sample_contact_department | Pediatric Oncology
| | Sample_contact_institute | ErasmusMC - Sophia's Childrens Hospital
| | Sample_contact_address | Dr Molewaterplein 50
| | Sample_contact_city | Rotterdam
| | Sample_contact_zip/postal_code | 3015 GE
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM816nnn/GSM816415/suppl/GSM816415.CEL.gz
| | Sample_series_id | GSE32962
| | Sample_data_row_count | 54517
| | |
|
GSM816416 | GPL570 |
|
MLL-rearranged infant ALL in vitro resistant to prednisolone 24
|
Primary infant ALL cells at diagnosis (untreated) (>90% blasts)
|
disease state: Precursor B-cell acute lymphoblastic leukemia (ALL)
cell type: Primary infant ALL cells at diagnosis (untreated) (>90% blasts)
genotype: MLL-rearranged
age: < 1 year of age
prednisolone sensitivity: resistant
|
res_24
Gene expression profiling data (HU133plus2.0) MLL-rearranged infant ALL cels
|
| Sample_geo_accession | GSM816416
| | Sample_status | Public on Oct 13 2011
| | Sample_submission_date | Oct 13 2011
| | Sample_last_update_date | Oct 13 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Primary ALL samples were obtained at diagnosis (before treatment) and processed within 24 hours after sampling. All samples contained >90% leukemic blasts.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted form leukemic cells using TRIzol reagent (Invitrogen) according to the manufacturer's protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Fragmented cRNA was hybridized to Affymetrix HU133plus 2.0 microarrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing = The CEL files represent the raw (unscaled; scaling factor | 1) gene expression data. Raw (unscaled) array data was collectively normalized using variance-stabilizing normalization (VSN), performed in the statistical environment R (version 2.10.1) using Bioconductor packages.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jill,,Spijkers-Hagelstein
| | Sample_contact_email | j.hagelstein@erasmusmc.nl
| | Sample_contact_phone | +31107043951
| | Sample_contact_department | Pediatric Oncology
| | Sample_contact_institute | ErasmusMC - Sophia's Childrens Hospital
| | Sample_contact_address | Dr Molewaterplein 50
| | Sample_contact_city | Rotterdam
| | Sample_contact_zip/postal_code | 3015 GE
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM816nnn/GSM816416/suppl/GSM816416.CEL.gz
| | Sample_series_id | GSE32962
| | Sample_data_row_count | 54517
| | |
|
GSM816417 | GPL570 |
|
MLL-rearranged infant ALL in vitro sensitive to prednisolone 1
|
Primary infant ALL cells at diagnosis (untreated) (>90% blasts)
|
disease state: Precursor B-cell acute lymphoblastic leukemia (ALL)
cell type: Primary infant ALL cells at diagnosis (untreated) (>90% blasts)
genotype: MLL-rearranged
age: < 1 year of age
prednisolone sensitivity: sensitive
|
sens_1
Gene expression profiling data (HU133plus2.0) MLL-rearranged infant ALL cels
|
| Sample_geo_accession | GSM816417
| | Sample_status | Public on Oct 13 2011
| | Sample_submission_date | Oct 13 2011
| | Sample_last_update_date | Oct 13 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Primary ALL samples were obtained at diagnosis (before treatment) and processed within 24 hours after sampling. All samples contained >90% leukemic blasts.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted form leukemic cells using TRIzol reagent (Invitrogen) according to the manufacturer's protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Fragmented cRNA was hybridized to Affymetrix HU133plus 2.0 microarrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing = The CEL files represent the raw (unscaled; scaling factor | 1) gene expression data. Raw (unscaled) array data was collectively normalized using variance-stabilizing normalization (VSN), performed in the statistical environment R (version 2.10.1) using Bioconductor packages.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jill,,Spijkers-Hagelstein
| | Sample_contact_email | j.hagelstein@erasmusmc.nl
| | Sample_contact_phone | +31107043951
| | Sample_contact_department | Pediatric Oncology
| | Sample_contact_institute | ErasmusMC - Sophia's Childrens Hospital
| | Sample_contact_address | Dr Molewaterplein 50
| | Sample_contact_city | Rotterdam
| | Sample_contact_zip/postal_code | 3015 GE
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM816nnn/GSM816417/suppl/GSM816417.CEL.gz
| | Sample_series_id | GSE32962
| | Sample_data_row_count | 54517
| | |
|
GSM816418 | GPL570 |
|
MLL-rearranged infant ALL in vitro sensitive to prednisolone 2
|
Primary infant ALL cells at diagnosis (untreated) (>90% blasts)
|
disease state: Precursor B-cell acute lymphoblastic leukemia (ALL)
cell type: Primary infant ALL cells at diagnosis (untreated) (>90% blasts)
genotype: MLL-rearranged
age: < 1 year of age
prednisolone sensitivity: sensitive
|
sens_2
Gene expression profiling data (HU133plus2.0) MLL-rearranged infant ALL cels
|
| Sample_geo_accession | GSM816418
| | Sample_status | Public on Oct 13 2011
| | Sample_submission_date | Oct 13 2011
| | Sample_last_update_date | Oct 13 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Primary ALL samples were obtained at diagnosis (before treatment) and processed within 24 hours after sampling. All samples contained >90% leukemic blasts.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted form leukemic cells using TRIzol reagent (Invitrogen) according to the manufacturer's protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Fragmented cRNA was hybridized to Affymetrix HU133plus 2.0 microarrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing = The CEL files represent the raw (unscaled; scaling factor | 1) gene expression data. Raw (unscaled) array data was collectively normalized using variance-stabilizing normalization (VSN), performed in the statistical environment R (version 2.10.1) using Bioconductor packages.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jill,,Spijkers-Hagelstein
| | Sample_contact_email | j.hagelstein@erasmusmc.nl
| | Sample_contact_phone | +31107043951
| | Sample_contact_department | Pediatric Oncology
| | Sample_contact_institute | ErasmusMC - Sophia's Childrens Hospital
| | Sample_contact_address | Dr Molewaterplein 50
| | Sample_contact_city | Rotterdam
| | Sample_contact_zip/postal_code | 3015 GE
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM816nnn/GSM816418/suppl/GSM816418.CEL.gz
| | Sample_series_id | GSE32962
| | Sample_data_row_count | 54517
| | |
|
GSM816419 | GPL570 |
|
MLL-rearranged infant ALL in vitro sensitive to prednisolone 3
|
Primary infant ALL cells at diagnosis (untreated) (>90% blasts)
|
disease state: Precursor B-cell acute lymphoblastic leukemia (ALL)
cell type: Primary infant ALL cells at diagnosis (untreated) (>90% blasts)
genotype: MLL-rearranged
age: < 1 year of age
prednisolone sensitivity: sensitive
|
sens_3
Gene expression profiling data (HU133plus2.0) MLL-rearranged infant ALL cels
|
| Sample_geo_accession | GSM816419
| | Sample_status | Public on Oct 13 2011
| | Sample_submission_date | Oct 13 2011
| | Sample_last_update_date | Oct 13 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Primary ALL samples were obtained at diagnosis (before treatment) and processed within 24 hours after sampling. All samples contained >90% leukemic blasts.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted form leukemic cells using TRIzol reagent (Invitrogen) according to the manufacturer's protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Fragmented cRNA was hybridized to Affymetrix HU133plus 2.0 microarrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing = The CEL files represent the raw (unscaled; scaling factor | 1) gene expression data. Raw (unscaled) array data was collectively normalized using variance-stabilizing normalization (VSN), performed in the statistical environment R (version 2.10.1) using Bioconductor packages.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jill,,Spijkers-Hagelstein
| | Sample_contact_email | j.hagelstein@erasmusmc.nl
| | Sample_contact_phone | +31107043951
| | Sample_contact_department | Pediatric Oncology
| | Sample_contact_institute | ErasmusMC - Sophia's Childrens Hospital
| | Sample_contact_address | Dr Molewaterplein 50
| | Sample_contact_city | Rotterdam
| | Sample_contact_zip/postal_code | 3015 GE
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM816nnn/GSM816419/suppl/GSM816419.CEL.gz
| | Sample_series_id | GSE32962
| | Sample_data_row_count | 54517
| | |
|
GSM816420 | GPL570 |
|
MLL-rearranged infant ALL in vitro sensitive to prednisolone 4
|
Primary infant ALL cells at diagnosis (untreated) (>90% blasts)
|
disease state: Precursor B-cell acute lymphoblastic leukemia (ALL)
cell type: Primary infant ALL cells at diagnosis (untreated) (>90% blasts)
genotype: MLL-rearranged
age: < 1 year of age
prednisolone sensitivity: sensitive
|
sens_4
Gene expression profiling data (HU133plus2.0) MLL-rearranged infant ALL cels
|
| Sample_geo_accession | GSM816420
| | Sample_status | Public on Oct 13 2011
| | Sample_submission_date | Oct 13 2011
| | Sample_last_update_date | Oct 13 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Primary ALL samples were obtained at diagnosis (before treatment) and processed within 24 hours after sampling. All samples contained >90% leukemic blasts.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted form leukemic cells using TRIzol reagent (Invitrogen) according to the manufacturer's protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Fragmented cRNA was hybridized to Affymetrix HU133plus 2.0 microarrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing = The CEL files represent the raw (unscaled; scaling factor | 1) gene expression data. Raw (unscaled) array data was collectively normalized using variance-stabilizing normalization (VSN), performed in the statistical environment R (version 2.10.1) using Bioconductor packages.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jill,,Spijkers-Hagelstein
| | Sample_contact_email | j.hagelstein@erasmusmc.nl
| | Sample_contact_phone | +31107043951
| | Sample_contact_department | Pediatric Oncology
| | Sample_contact_institute | ErasmusMC - Sophia's Childrens Hospital
| | Sample_contact_address | Dr Molewaterplein 50
| | Sample_contact_city | Rotterdam
| | Sample_contact_zip/postal_code | 3015 GE
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM816nnn/GSM816420/suppl/GSM816420.CEL.gz
| | Sample_series_id | GSE32962
| | Sample_data_row_count | 54517
| | |
|
GSM816421 | GPL570 |
|
MLL-rearranged infant ALL in vitro sensitive to prednisolone 5
|
Primary infant ALL cells at diagnosis (untreated) (>90% blasts)
|
disease state: Precursor B-cell acute lymphoblastic leukemia (ALL)
cell type: Primary infant ALL cells at diagnosis (untreated) (>90% blasts)
genotype: MLL-rearranged
age: < 1 year of age
prednisolone sensitivity: sensitive
|
sens_5
Gene expression profiling data (HU133plus2.0) MLL-rearranged infant ALL cels
|
| Sample_geo_accession | GSM816421
| | Sample_status | Public on Oct 13 2011
| | Sample_submission_date | Oct 13 2011
| | Sample_last_update_date | Oct 13 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Primary ALL samples were obtained at diagnosis (before treatment) and processed within 24 hours after sampling. All samples contained >90% leukemic blasts.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted form leukemic cells using TRIzol reagent (Invitrogen) according to the manufacturer's protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Fragmented cRNA was hybridized to Affymetrix HU133plus 2.0 microarrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing = The CEL files represent the raw (unscaled; scaling factor | 1) gene expression data. Raw (unscaled) array data was collectively normalized using variance-stabilizing normalization (VSN), performed in the statistical environment R (version 2.10.1) using Bioconductor packages.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jill,,Spijkers-Hagelstein
| | Sample_contact_email | j.hagelstein@erasmusmc.nl
| | Sample_contact_phone | +31107043951
| | Sample_contact_department | Pediatric Oncology
| | Sample_contact_institute | ErasmusMC - Sophia's Childrens Hospital
| | Sample_contact_address | Dr Molewaterplein 50
| | Sample_contact_city | Rotterdam
| | Sample_contact_zip/postal_code | 3015 GE
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM816nnn/GSM816421/suppl/GSM816421.CEL.gz
| | Sample_series_id | GSE32962
| | Sample_data_row_count | 54517
| | |
|
GSM816422 | GPL570 |
|
MLL-rearranged infant ALL in vitro sensitive to prednisolone 6
|
Primary infant ALL cells at diagnosis (untreated) (>90% blasts)
|
disease state: Precursor B-cell acute lymphoblastic leukemia (ALL)
cell type: Primary infant ALL cells at diagnosis (untreated) (>90% blasts)
genotype: MLL-rearranged
age: < 1 year of age
prednisolone sensitivity: sensitive
|
sens_6
Gene expression profiling data (HU133plus2.0) MLL-rearranged infant ALL cels
|
| Sample_geo_accession | GSM816422
| | Sample_status | Public on Oct 13 2011
| | Sample_submission_date | Oct 13 2011
| | Sample_last_update_date | Oct 13 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Primary ALL samples were obtained at diagnosis (before treatment) and processed within 24 hours after sampling. All samples contained >90% leukemic blasts.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted form leukemic cells using TRIzol reagent (Invitrogen) according to the manufacturer's protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Fragmented cRNA was hybridized to Affymetrix HU133plus 2.0 microarrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing = The CEL files represent the raw (unscaled; scaling factor | 1) gene expression data. Raw (unscaled) array data was collectively normalized using variance-stabilizing normalization (VSN), performed in the statistical environment R (version 2.10.1) using Bioconductor packages.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jill,,Spijkers-Hagelstein
| | Sample_contact_email | j.hagelstein@erasmusmc.nl
| | Sample_contact_phone | +31107043951
| | Sample_contact_department | Pediatric Oncology
| | Sample_contact_institute | ErasmusMC - Sophia's Childrens Hospital
| | Sample_contact_address | Dr Molewaterplein 50
| | Sample_contact_city | Rotterdam
| | Sample_contact_zip/postal_code | 3015 GE
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM816nnn/GSM816422/suppl/GSM816422.CEL.gz
| | Sample_series_id | GSE32962
| | Sample_data_row_count | 54517
| | |
|
GSM816423 | GPL570 |
|
MLL-rearranged infant ALL in vitro sensitive to prednisolone 7
|
Primary infant ALL cells at diagnosis (untreated) (>90% blasts)
|
disease state: Precursor B-cell acute lymphoblastic leukemia (ALL)
cell type: Primary infant ALL cells at diagnosis (untreated) (>90% blasts)
genotype: MLL-rearranged
age: < 1 year of age
prednisolone sensitivity: sensitive
|
sens_7
Gene expression profiling data (HU133plus2.0) MLL-rearranged infant ALL cels
|
| Sample_geo_accession | GSM816423
| | Sample_status | Public on Oct 13 2011
| | Sample_submission_date | Oct 13 2011
| | Sample_last_update_date | Oct 13 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Primary ALL samples were obtained at diagnosis (before treatment) and processed within 24 hours after sampling. All samples contained >90% leukemic blasts.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted form leukemic cells using TRIzol reagent (Invitrogen) according to the manufacturer's protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Fragmented cRNA was hybridized to Affymetrix HU133plus 2.0 microarrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing = The CEL files represent the raw (unscaled; scaling factor | 1) gene expression data. Raw (unscaled) array data was collectively normalized using variance-stabilizing normalization (VSN), performed in the statistical environment R (version 2.10.1) using Bioconductor packages.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jill,,Spijkers-Hagelstein
| | Sample_contact_email | j.hagelstein@erasmusmc.nl
| | Sample_contact_phone | +31107043951
| | Sample_contact_department | Pediatric Oncology
| | Sample_contact_institute | ErasmusMC - Sophia's Childrens Hospital
| | Sample_contact_address | Dr Molewaterplein 50
| | Sample_contact_city | Rotterdam
| | Sample_contact_zip/postal_code | 3015 GE
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM816nnn/GSM816423/suppl/GSM816423.CEL.gz
| | Sample_series_id | GSE32962
| | Sample_data_row_count | 54517
| | |
|
GSM816424 | GPL570 |
|
MLL-rearranged infant ALL in vitro sensitive to prednisolone 8
|
Primary infant ALL cells at diagnosis (untreated) (>90% blasts)
|
disease state: Precursor B-cell acute lymphoblastic leukemia (ALL)
cell type: Primary infant ALL cells at diagnosis (untreated) (>90% blasts)
genotype: MLL-rearranged
age: < 1 year of age
prednisolone sensitivity: sensitive
|
sens_8
Gene expression profiling data (HU133plus2.0) MLL-rearranged infant ALL cels
|
| Sample_geo_accession | GSM816424
| | Sample_status | Public on Oct 13 2011
| | Sample_submission_date | Oct 13 2011
| | Sample_last_update_date | Oct 13 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Primary ALL samples were obtained at diagnosis (before treatment) and processed within 24 hours after sampling. All samples contained >90% leukemic blasts.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted form leukemic cells using TRIzol reagent (Invitrogen) according to the manufacturer's protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Fragmented cRNA was hybridized to Affymetrix HU133plus 2.0 microarrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing = The CEL files represent the raw (unscaled; scaling factor | 1) gene expression data. Raw (unscaled) array data was collectively normalized using variance-stabilizing normalization (VSN), performed in the statistical environment R (version 2.10.1) using Bioconductor packages.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jill,,Spijkers-Hagelstein
| | Sample_contact_email | j.hagelstein@erasmusmc.nl
| | Sample_contact_phone | +31107043951
| | Sample_contact_department | Pediatric Oncology
| | Sample_contact_institute | ErasmusMC - Sophia's Childrens Hospital
| | Sample_contact_address | Dr Molewaterplein 50
| | Sample_contact_city | Rotterdam
| | Sample_contact_zip/postal_code | 3015 GE
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM816nnn/GSM816424/suppl/GSM816424.CEL.gz
| | Sample_series_id | GSE32962
| | Sample_data_row_count | 54517
| | |
|
GSM816425 | GPL570 |
|
MLL-rearranged infant ALL in vitro sensitive to prednisolone 9
|
Primary infant ALL cells at diagnosis (untreated) (>90% blasts)
|
disease state: Precursor B-cell acute lymphoblastic leukemia (ALL)
cell type: Primary infant ALL cells at diagnosis (untreated) (>90% blasts)
genotype: MLL-rearranged
age: < 1 year of age
prednisolone sensitivity: sensitive
|
sens_9
Gene expression profiling data (HU133plus2.0) MLL-rearranged infant ALL cels
|
| Sample_geo_accession | GSM816425
| | Sample_status | Public on Oct 13 2011
| | Sample_submission_date | Oct 13 2011
| | Sample_last_update_date | Oct 13 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Primary ALL samples were obtained at diagnosis (before treatment) and processed within 24 hours after sampling. All samples contained >90% leukemic blasts.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted form leukemic cells using TRIzol reagent (Invitrogen) according to the manufacturer's protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Fragmented cRNA was hybridized to Affymetrix HU133plus 2.0 microarrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing = The CEL files represent the raw (unscaled; scaling factor | 1) gene expression data. Raw (unscaled) array data was collectively normalized using variance-stabilizing normalization (VSN), performed in the statistical environment R (version 2.10.1) using Bioconductor packages.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jill,,Spijkers-Hagelstein
| | Sample_contact_email | j.hagelstein@erasmusmc.nl
| | Sample_contact_phone | +31107043951
| | Sample_contact_department | Pediatric Oncology
| | Sample_contact_institute | ErasmusMC - Sophia's Childrens Hospital
| | Sample_contact_address | Dr Molewaterplein 50
| | Sample_contact_city | Rotterdam
| | Sample_contact_zip/postal_code | 3015 GE
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM816nnn/GSM816425/suppl/GSM816425.CEL.gz
| | Sample_series_id | GSE32962
| | Sample_data_row_count | 54517
| | |
|
GSM816426 | GPL570 |
|
MLL-rearranged infant ALL in vitro sensitive to prednisolone 10
|
Primary infant ALL cells at diagnosis (untreated) (>90% blasts)
|
disease state: Precursor B-cell acute lymphoblastic leukemia (ALL)
cell type: Primary infant ALL cells at diagnosis (untreated) (>90% blasts)
genotype: MLL-rearranged
age: < 1 year of age
prednisolone sensitivity: sensitive
|
sens_10
Gene expression profiling data (HU133plus2.0) MLL-rearranged infant ALL cels
|
| Sample_geo_accession | GSM816426
| | Sample_status | Public on Oct 13 2011
| | Sample_submission_date | Oct 13 2011
| | Sample_last_update_date | Oct 13 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Primary ALL samples were obtained at diagnosis (before treatment) and processed within 24 hours after sampling. All samples contained >90% leukemic blasts.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted form leukemic cells using TRIzol reagent (Invitrogen) according to the manufacturer's protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Fragmented cRNA was hybridized to Affymetrix HU133plus 2.0 microarrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing = The CEL files represent the raw (unscaled; scaling factor | 1) gene expression data. Raw (unscaled) array data was collectively normalized using variance-stabilizing normalization (VSN), performed in the statistical environment R (version 2.10.1) using Bioconductor packages.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jill,,Spijkers-Hagelstein
| | Sample_contact_email | j.hagelstein@erasmusmc.nl
| | Sample_contact_phone | +31107043951
| | Sample_contact_department | Pediatric Oncology
| | Sample_contact_institute | ErasmusMC - Sophia's Childrens Hospital
| | Sample_contact_address | Dr Molewaterplein 50
| | Sample_contact_city | Rotterdam
| | Sample_contact_zip/postal_code | 3015 GE
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM816nnn/GSM816426/suppl/GSM816426.CEL.gz
| | Sample_series_id | GSE32962
| | Sample_data_row_count | 54517
| | |
|
GSM816427 | GPL570 |
|
MLL-rearranged infant ALL in vitro sensitive to prednisolone 11
|
Primary infant ALL cells at diagnosis (untreated) (>90% blasts)
|
disease state: Precursor B-cell acute lymphoblastic leukemia (ALL)
cell type: Primary infant ALL cells at diagnosis (untreated) (>90% blasts)
genotype: MLL-rearranged
age: < 1 year of age
prednisolone sensitivity: sensitive
|
sens_11
Gene expression profiling data (HU133plus2.0) MLL-rearranged infant ALL cels
|
| Sample_geo_accession | GSM816427
| | Sample_status | Public on Oct 13 2011
| | Sample_submission_date | Oct 13 2011
| | Sample_last_update_date | Oct 13 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Primary ALL samples were obtained at diagnosis (before treatment) and processed within 24 hours after sampling. All samples contained >90% leukemic blasts.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted form leukemic cells using TRIzol reagent (Invitrogen) according to the manufacturer's protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Fragmented cRNA was hybridized to Affymetrix HU133plus 2.0 microarrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing = The CEL files represent the raw (unscaled; scaling factor | 1) gene expression data. Raw (unscaled) array data was collectively normalized using variance-stabilizing normalization (VSN), performed in the statistical environment R (version 2.10.1) using Bioconductor packages.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jill,,Spijkers-Hagelstein
| | Sample_contact_email | j.hagelstein@erasmusmc.nl
| | Sample_contact_phone | +31107043951
| | Sample_contact_department | Pediatric Oncology
| | Sample_contact_institute | ErasmusMC - Sophia's Childrens Hospital
| | Sample_contact_address | Dr Molewaterplein 50
| | Sample_contact_city | Rotterdam
| | Sample_contact_zip/postal_code | 3015 GE
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM816nnn/GSM816427/suppl/GSM816427.CEL.gz
| | Sample_series_id | GSE32962
| | Sample_data_row_count | 54517
| | |
|
GSM816428 | GPL570 |
|
MLL-rearranged infant ALL in vitro sensitive to prednisolone 12
|
Primary infant ALL cells at diagnosis (untreated) (>90% blasts)
|
disease state: Precursor B-cell acute lymphoblastic leukemia (ALL)
cell type: Primary infant ALL cells at diagnosis (untreated) (>90% blasts)
genotype: MLL-rearranged
age: < 1 year of age
prednisolone sensitivity: sensitive
|
sens_12
Gene expression profiling data (HU133plus2.0) MLL-rearranged infant ALL cels
|
| Sample_geo_accession | GSM816428
| | Sample_status | Public on Oct 13 2011
| | Sample_submission_date | Oct 13 2011
| | Sample_last_update_date | Oct 13 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Primary ALL samples were obtained at diagnosis (before treatment) and processed within 24 hours after sampling. All samples contained >90% leukemic blasts.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted form leukemic cells using TRIzol reagent (Invitrogen) according to the manufacturer's protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Fragmented cRNA was hybridized to Affymetrix HU133plus 2.0 microarrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing = The CEL files represent the raw (unscaled; scaling factor | 1) gene expression data. Raw (unscaled) array data was collectively normalized using variance-stabilizing normalization (VSN), performed in the statistical environment R (version 2.10.1) using Bioconductor packages.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jill,,Spijkers-Hagelstein
| | Sample_contact_email | j.hagelstein@erasmusmc.nl
| | Sample_contact_phone | +31107043951
| | Sample_contact_department | Pediatric Oncology
| | Sample_contact_institute | ErasmusMC - Sophia's Childrens Hospital
| | Sample_contact_address | Dr Molewaterplein 50
| | Sample_contact_city | Rotterdam
| | Sample_contact_zip/postal_code | 3015 GE
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM816nnn/GSM816428/suppl/GSM816428.CEL.gz
| | Sample_series_id | GSE32962
| | Sample_data_row_count | 54517
| | |
|
GSM816429 | GPL570 |
|
MLL-rearranged infant ALL in vitro sensitive to prednisolone 13
|
Primary infant ALL cells at diagnosis (untreated) (>90% blasts)
|
disease state: Precursor B-cell acute lymphoblastic leukemia (ALL)
cell type: Primary infant ALL cells at diagnosis (untreated) (>90% blasts)
genotype: MLL-rearranged
age: < 1 year of age
prednisolone sensitivity: sensitive
|
sens_13
Gene expression profiling data (HU133plus2.0) MLL-rearranged infant ALL cels
|
| Sample_geo_accession | GSM816429
| | Sample_status | Public on Oct 13 2011
| | Sample_submission_date | Oct 13 2011
| | Sample_last_update_date | Oct 13 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Primary ALL samples were obtained at diagnosis (before treatment) and processed within 24 hours after sampling. All samples contained >90% leukemic blasts.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted form leukemic cells using TRIzol reagent (Invitrogen) according to the manufacturer's protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Fragmented cRNA was hybridized to Affymetrix HU133plus 2.0 microarrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing = The CEL files represent the raw (unscaled; scaling factor | 1) gene expression data. Raw (unscaled) array data was collectively normalized using variance-stabilizing normalization (VSN), performed in the statistical environment R (version 2.10.1) using Bioconductor packages.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jill,,Spijkers-Hagelstein
| | Sample_contact_email | j.hagelstein@erasmusmc.nl
| | Sample_contact_phone | +31107043951
| | Sample_contact_department | Pediatric Oncology
| | Sample_contact_institute | ErasmusMC - Sophia's Childrens Hospital
| | Sample_contact_address | Dr Molewaterplein 50
| | Sample_contact_city | Rotterdam
| | Sample_contact_zip/postal_code | 3015 GE
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM816nnn/GSM816429/suppl/GSM816429.CEL.gz
| | Sample_series_id | GSE32962
| | Sample_data_row_count | 54517
| | |
|
GSM816430 | GPL570 |
|
MLL-rearranged infant ALL in vitro sensitive to prednisolone 14
|
Primary infant ALL cells at diagnosis (untreated) (>90% blasts)
|
disease state: Precursor B-cell acute lymphoblastic leukemia (ALL)
cell type: Primary infant ALL cells at diagnosis (untreated) (>90% blasts)
genotype: MLL-rearranged
age: < 1 year of age
prednisolone sensitivity: sensitive
|
sens_14
Gene expression profiling data (HU133plus2.0) MLL-rearranged infant ALL cels
|
| Sample_geo_accession | GSM816430
| | Sample_status | Public on Oct 13 2011
| | Sample_submission_date | Oct 13 2011
| | Sample_last_update_date | Oct 13 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Primary ALL samples were obtained at diagnosis (before treatment) and processed within 24 hours after sampling. All samples contained >90% leukemic blasts.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted form leukemic cells using TRIzol reagent (Invitrogen) according to the manufacturer's protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Fragmented cRNA was hybridized to Affymetrix HU133plus 2.0 microarrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing = The CEL files represent the raw (unscaled; scaling factor | 1) gene expression data. Raw (unscaled) array data was collectively normalized using variance-stabilizing normalization (VSN), performed in the statistical environment R (version 2.10.1) using Bioconductor packages.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jill,,Spijkers-Hagelstein
| | Sample_contact_email | j.hagelstein@erasmusmc.nl
| | Sample_contact_phone | +31107043951
| | Sample_contact_department | Pediatric Oncology
| | Sample_contact_institute | ErasmusMC - Sophia's Childrens Hospital
| | Sample_contact_address | Dr Molewaterplein 50
| | Sample_contact_city | Rotterdam
| | Sample_contact_zip/postal_code | 3015 GE
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM816nnn/GSM816430/suppl/GSM816430.CEL.gz
| | Sample_series_id | GSE32962
| | Sample_data_row_count | 54517
| | |
|
GSM816431 | GPL570 |
|
MLL-rearranged infant ALL in vitro sensitive to prednisolone 15
|
Primary infant ALL cells at diagnosis (untreated) (>90% blasts)
|
disease state: Precursor B-cell acute lymphoblastic leukemia (ALL)
cell type: Primary infant ALL cells at diagnosis (untreated) (>90% blasts)
genotype: MLL-rearranged
age: < 1 year of age
prednisolone sensitivity: sensitive
|
sens_15
Gene expression profiling data (HU133plus2.0) MLL-rearranged infant ALL cels
|
| Sample_geo_accession | GSM816431
| | Sample_status | Public on Oct 13 2011
| | Sample_submission_date | Oct 13 2011
| | Sample_last_update_date | Oct 13 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Primary ALL samples were obtained at diagnosis (before treatment) and processed within 24 hours after sampling. All samples contained >90% leukemic blasts.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted form leukemic cells using TRIzol reagent (Invitrogen) according to the manufacturer's protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Fragmented cRNA was hybridized to Affymetrix HU133plus 2.0 microarrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing = The CEL files represent the raw (unscaled; scaling factor | 1) gene expression data. Raw (unscaled) array data was collectively normalized using variance-stabilizing normalization (VSN), performed in the statistical environment R (version 2.10.1) using Bioconductor packages.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jill,,Spijkers-Hagelstein
| | Sample_contact_email | j.hagelstein@erasmusmc.nl
| | Sample_contact_phone | +31107043951
| | Sample_contact_department | Pediatric Oncology
| | Sample_contact_institute | ErasmusMC - Sophia's Childrens Hospital
| | Sample_contact_address | Dr Molewaterplein 50
| | Sample_contact_city | Rotterdam
| | Sample_contact_zip/postal_code | 3015 GE
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM816nnn/GSM816431/suppl/GSM816431.CEL.gz
| | Sample_series_id | GSE32962
| | Sample_data_row_count | 54517
| | |
|
GSM816432 | GPL570 |
|
MLL-rearranged infant ALL in vitro sensitive to prednisolone 16
|
Primary infant ALL cells at diagnosis (untreated) (>90% blasts)
|
disease state: Precursor B-cell acute lymphoblastic leukemia (ALL)
cell type: Primary infant ALL cells at diagnosis (untreated) (>90% blasts)
genotype: MLL-rearranged
age: < 1 year of age
prednisolone sensitivity: sensitive
|
sens_16
Gene expression profiling data (HU133plus2.0) MLL-rearranged infant ALL cels
|
| Sample_geo_accession | GSM816432
| | Sample_status | Public on Oct 13 2011
| | Sample_submission_date | Oct 13 2011
| | Sample_last_update_date | Oct 13 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Primary ALL samples were obtained at diagnosis (before treatment) and processed within 24 hours after sampling. All samples contained >90% leukemic blasts.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted form leukemic cells using TRIzol reagent (Invitrogen) according to the manufacturer's protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Fragmented cRNA was hybridized to Affymetrix HU133plus 2.0 microarrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing = The CEL files represent the raw (unscaled; scaling factor | 1) gene expression data. Raw (unscaled) array data was collectively normalized using variance-stabilizing normalization (VSN), performed in the statistical environment R (version 2.10.1) using Bioconductor packages.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jill,,Spijkers-Hagelstein
| | Sample_contact_email | j.hagelstein@erasmusmc.nl
| | Sample_contact_phone | +31107043951
| | Sample_contact_department | Pediatric Oncology
| | Sample_contact_institute | ErasmusMC - Sophia's Childrens Hospital
| | Sample_contact_address | Dr Molewaterplein 50
| | Sample_contact_city | Rotterdam
| | Sample_contact_zip/postal_code | 3015 GE
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM816nnn/GSM816432/suppl/GSM816432.CEL.gz
| | Sample_series_id | GSE32962
| | Sample_data_row_count | 54517
| | |
|
GSM816433 | GPL570 |
|
MLL-rearranged infant ALL in vitro sensitive to prednisolone 17
|
Primary infant ALL cells at diagnosis (untreated) (>90% blasts)
|
disease state: Precursor B-cell acute lymphoblastic leukemia (ALL)
cell type: Primary infant ALL cells at diagnosis (untreated) (>90% blasts)
genotype: MLL-rearranged
age: < 1 year of age
prednisolone sensitivity: sensitive
|
sens_17
Gene expression profiling data (HU133plus2.0) MLL-rearranged infant ALL cels
|
| Sample_geo_accession | GSM816433
| | Sample_status | Public on Oct 13 2011
| | Sample_submission_date | Oct 13 2011
| | Sample_last_update_date | Oct 13 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Primary ALL samples were obtained at diagnosis (before treatment) and processed within 24 hours after sampling. All samples contained >90% leukemic blasts.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted form leukemic cells using TRIzol reagent (Invitrogen) according to the manufacturer's protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Fragmented cRNA was hybridized to Affymetrix HU133plus 2.0 microarrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing = The CEL files represent the raw (unscaled; scaling factor | 1) gene expression data. Raw (unscaled) array data was collectively normalized using variance-stabilizing normalization (VSN), performed in the statistical environment R (version 2.10.1) using Bioconductor packages.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jill,,Spijkers-Hagelstein
| | Sample_contact_email | j.hagelstein@erasmusmc.nl
| | Sample_contact_phone | +31107043951
| | Sample_contact_department | Pediatric Oncology
| | Sample_contact_institute | ErasmusMC - Sophia's Childrens Hospital
| | Sample_contact_address | Dr Molewaterplein 50
| | Sample_contact_city | Rotterdam
| | Sample_contact_zip/postal_code | 3015 GE
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM816nnn/GSM816433/suppl/GSM816433.CEL.gz
| | Sample_series_id | GSE32962
| | Sample_data_row_count | 54517
| | |
|
GSM816434 | GPL570 |
|
MLL-rearranged infant ALL in vitro sensitive to prednisolone 18
|
Primary infant ALL cells at diagnosis (untreated) (>90% blasts)
|
disease state: Precursor B-cell acute lymphoblastic leukemia (ALL)
cell type: Primary infant ALL cells at diagnosis (untreated) (>90% blasts)
genotype: MLL-rearranged
age: < 1 year of age
prednisolone sensitivity: sensitive
|
sens_18
Gene expression profiling data (HU133plus2.0) MLL-rearranged infant ALL cels
|
| Sample_geo_accession | GSM816434
| | Sample_status | Public on Oct 13 2011
| | Sample_submission_date | Oct 13 2011
| | Sample_last_update_date | Oct 13 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Primary ALL samples were obtained at diagnosis (before treatment) and processed within 24 hours after sampling. All samples contained >90% leukemic blasts.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted form leukemic cells using TRIzol reagent (Invitrogen) according to the manufacturer's protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Fragmented cRNA was hybridized to Affymetrix HU133plus 2.0 microarrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing = The CEL files represent the raw (unscaled; scaling factor | 1) gene expression data. Raw (unscaled) array data was collectively normalized using variance-stabilizing normalization (VSN), performed in the statistical environment R (version 2.10.1) using Bioconductor packages.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jill,,Spijkers-Hagelstein
| | Sample_contact_email | j.hagelstein@erasmusmc.nl
| | Sample_contact_phone | +31107043951
| | Sample_contact_department | Pediatric Oncology
| | Sample_contact_institute | ErasmusMC - Sophia's Childrens Hospital
| | Sample_contact_address | Dr Molewaterplein 50
| | Sample_contact_city | Rotterdam
| | Sample_contact_zip/postal_code | 3015 GE
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM816nnn/GSM816434/suppl/GSM816434.CEL.gz
| | Sample_series_id | GSE32962
| | Sample_data_row_count | 54517
| | |
|
GSM816435 | GPL570 |
|
MLL-rearranged infant ALL in vitro sensitive to prednisolone 19
|
Primary infant ALL cells at diagnosis (untreated) (>90% blasts)
|
disease state: Precursor B-cell acute lymphoblastic leukemia (ALL)
cell type: Primary infant ALL cells at diagnosis (untreated) (>90% blasts)
genotype: MLL-rearranged
age: < 1 year of age
prednisolone sensitivity: sensitive
|
sens_19
Gene expression profiling data (HU133plus2.0) MLL-rearranged infant ALL cels
|
| Sample_geo_accession | GSM816435
| | Sample_status | Public on Oct 13 2011
| | Sample_submission_date | Oct 13 2011
| | Sample_last_update_date | Oct 13 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Primary ALL samples were obtained at diagnosis (before treatment) and processed within 24 hours after sampling. All samples contained >90% leukemic blasts.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted form leukemic cells using TRIzol reagent (Invitrogen) according to the manufacturer's protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Fragmented cRNA was hybridized to Affymetrix HU133plus 2.0 microarrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing = The CEL files represent the raw (unscaled; scaling factor | 1) gene expression data. Raw (unscaled) array data was collectively normalized using variance-stabilizing normalization (VSN), performed in the statistical environment R (version 2.10.1) using Bioconductor packages.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jill,,Spijkers-Hagelstein
| | Sample_contact_email | j.hagelstein@erasmusmc.nl
| | Sample_contact_phone | +31107043951
| | Sample_contact_department | Pediatric Oncology
| | Sample_contact_institute | ErasmusMC - Sophia's Childrens Hospital
| | Sample_contact_address | Dr Molewaterplein 50
| | Sample_contact_city | Rotterdam
| | Sample_contact_zip/postal_code | 3015 GE
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM816nnn/GSM816435/suppl/GSM816435.CEL.gz
| | Sample_series_id | GSE32962
| | Sample_data_row_count | 54517
| | |
|
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