Search results for the GEO ID: GSE33169  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM821278 | GPL570 |
|
Negative-pressure-treated patient 1, intact skin sample
|
Punch biopsy from healthy intact skin
|
patient: patient 1
treatment: Negative-pressure-treated
|
|
| Sample_geo_accession | GSM821278
| | Sample_status | Public on Oct 25 2011
| | Sample_submission_date | Oct 24 2011
| | Sample_last_update_date | Oct 25 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | The skin biopsies were immediately immersed in RNAlater® (Qiagen) buffer, were incubated at +4°C for one day, and stored thereafter at -80°C until RNA isolation.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The skin samples were homogenized using the Precellys 24 tissue homogenizer with a Cryolys temperature controller unit (Bertin Technologies SA, Montigny-le-Bretonneux, France).Total RNA was extracted from the homogenized tissue samples with an RNeasy® mini kit (Qiagen) according to the manufacturer’s protocol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix GeneChip 3' IVT Express Kit
| | Sample_hyb_protocol | According to Affymetrix GeneChip Hybridization, Wash and Stain Kit
| | Sample_scan_protocol | Chip scanning was performed with a GeneChip Scanner 3000 7G (Affymetrix)
| | Sample_data_processing | Data analysis was performed with GeneSpring GX software, version 11.0.1 (Agilent Technologies), normalized to the median, and filtered by expression. Statistical analysis was performed, using GeneSpring GX software, version 11.0.1 (Agilent Technologies). Differences between the groups were compared using 2-way analysis of variance (ANOVA) with Benjamini-Hochberg posttesting.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Kristo,Juhana,Nuutila
| | Sample_contact_laboratory | Pharmacology
| | Sample_contact_department | Institute of Biomedicine
| | Sample_contact_institute | University of Helsinki
| | Sample_contact_address | Haartmaninkatu 8, Biomedicum 1
| | Sample_contact_city | Helsinki
| | Sample_contact_zip/postal_code | 00290
| | Sample_contact_country | Finland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM821nnn/GSM821278/suppl/GSM821278_NPWT1_intact.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM821nnn/GSM821278/suppl/GSM821278_NPWT1_intact.CHP.gz
| | Sample_series_id | GSE33169
| | Sample_data_row_count | 54675
| | |
|
GSM821279 | GPL570 |
|
Negative-pressure-treated patient 1, 7th post operative day sample
|
Punch biopsy from split-thickness skin graft donor site wound
|
patient: patient 1
treatment: Negative-pressure-treated
|
|
| Sample_geo_accession | GSM821279
| | Sample_status | Public on Oct 25 2011
| | Sample_submission_date | Oct 24 2011
| | Sample_last_update_date | Oct 25 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | The skin biopsies were immediately immersed in RNAlater® (Qiagen) buffer, were incubated at +4°C for one day, and stored thereafter at -80°C until RNA isolation.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The skin samples were homogenized using the Precellys 24 tissue homogenizer with a Cryolys temperature controller unit (Bertin Technologies SA, Montigny-le-Bretonneux, France).Total RNA was extracted from the homogenized tissue samples with an RNeasy® mini kit (Qiagen) according to the manufacturer’s protocol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix GeneChip 3' IVT Express Kit
| | Sample_hyb_protocol | According to Affymetrix GeneChip Hybridization, Wash and Stain Kit
| | Sample_scan_protocol | Chip scanning was performed with a GeneChip Scanner 3000 7G (Affymetrix)
| | Sample_data_processing | Data analysis was performed with GeneSpring GX software, version 11.0.1 (Agilent Technologies), normalized to the median, and filtered by expression. Statistical analysis was performed, using GeneSpring GX software, version 11.0.1 (Agilent Technologies). Differences between the groups were compared using 2-way analysis of variance (ANOVA) with Benjamini-Hochberg posttesting.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Kristo,Juhana,Nuutila
| | Sample_contact_laboratory | Pharmacology
| | Sample_contact_department | Institute of Biomedicine
| | Sample_contact_institute | University of Helsinki
| | Sample_contact_address | Haartmaninkatu 8, Biomedicum 1
| | Sample_contact_city | Helsinki
| | Sample_contact_zip/postal_code | 00290
| | Sample_contact_country | Finland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM821nnn/GSM821279/suppl/GSM821279_NPWT1_7POD.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM821nnn/GSM821279/suppl/GSM821279_NPWT1_7POD.CHP.gz
| | Sample_series_id | GSE33169
| | Sample_data_row_count | 54675
| | |
|
GSM821280 | GPL570 |
|
Negative-pressure-treated patient 2, intact skin sample
|
Punch biopsy from healthy intact skin
|
patient: patient 2
treatment: Negative-pressure-treated
|
|
| Sample_geo_accession | GSM821280
| | Sample_status | Public on Oct 25 2011
| | Sample_submission_date | Oct 24 2011
| | Sample_last_update_date | Oct 25 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | The skin biopsies were immediately immersed in RNAlater® (Qiagen) buffer, were incubated at +4°C for one day, and stored thereafter at -80°C until RNA isolation.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The skin samples were homogenized using the Precellys 24 tissue homogenizer with a Cryolys temperature controller unit (Bertin Technologies SA, Montigny-le-Bretonneux, France).Total RNA was extracted from the homogenized tissue samples with an RNeasy® mini kit (Qiagen) according to the manufacturer’s protocol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix GeneChip 3' IVT Express Kit
| | Sample_hyb_protocol | According to Affymetrix GeneChip Hybridization, Wash and Stain Kit
| | Sample_scan_protocol | Chip scanning was performed with a GeneChip Scanner 3000 7G (Affymetrix)
| | Sample_data_processing | Data analysis was performed with GeneSpring GX software, version 11.0.1 (Agilent Technologies), normalized to the median, and filtered by expression. Statistical analysis was performed, using GeneSpring GX software, version 11.0.1 (Agilent Technologies). Differences between the groups were compared using 2-way analysis of variance (ANOVA) with Benjamini-Hochberg posttesting.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Kristo,Juhana,Nuutila
| | Sample_contact_laboratory | Pharmacology
| | Sample_contact_department | Institute of Biomedicine
| | Sample_contact_institute | University of Helsinki
| | Sample_contact_address | Haartmaninkatu 8, Biomedicum 1
| | Sample_contact_city | Helsinki
| | Sample_contact_zip/postal_code | 00290
| | Sample_contact_country | Finland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM821nnn/GSM821280/suppl/GSM821280_NPWT2_intact.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM821nnn/GSM821280/suppl/GSM821280_NPWT2_intact.CHP.gz
| | Sample_series_id | GSE33169
| | Sample_data_row_count | 54675
| | |
|
GSM821281 | GPL570 |
|
Negative-pressure-treated patient 2, 7th post operative day sample
|
Punch biopsy from split-thickness skin graft donor site wound
|
patient: patient 2
treatment: Negative-pressure-treated
|
|
| Sample_geo_accession | GSM821281
| | Sample_status | Public on Oct 25 2011
| | Sample_submission_date | Oct 24 2011
| | Sample_last_update_date | Oct 25 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | The skin biopsies were immediately immersed in RNAlater® (Qiagen) buffer, were incubated at +4°C for one day, and stored thereafter at -80°C until RNA isolation.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The skin samples were homogenized using the Precellys 24 tissue homogenizer with a Cryolys temperature controller unit (Bertin Technologies SA, Montigny-le-Bretonneux, France).Total RNA was extracted from the homogenized tissue samples with an RNeasy® mini kit (Qiagen) according to the manufacturer’s protocol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix GeneChip 3' IVT Express Kit
| | Sample_hyb_protocol | According to Affymetrix GeneChip Hybridization, Wash and Stain Kit
| | Sample_scan_protocol | Chip scanning was performed with a GeneChip Scanner 3000 7G (Affymetrix)
| | Sample_data_processing | Data analysis was performed with GeneSpring GX software, version 11.0.1 (Agilent Technologies), normalized to the median, and filtered by expression. Statistical analysis was performed, using GeneSpring GX software, version 11.0.1 (Agilent Technologies). Differences between the groups were compared using 2-way analysis of variance (ANOVA) with Benjamini-Hochberg posttesting.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Kristo,Juhana,Nuutila
| | Sample_contact_laboratory | Pharmacology
| | Sample_contact_department | Institute of Biomedicine
| | Sample_contact_institute | University of Helsinki
| | Sample_contact_address | Haartmaninkatu 8, Biomedicum 1
| | Sample_contact_city | Helsinki
| | Sample_contact_zip/postal_code | 00290
| | Sample_contact_country | Finland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM821nnn/GSM821281/suppl/GSM821281_NPWT2_7POD.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM821nnn/GSM821281/suppl/GSM821281_NPWT2_7POD.CHP.gz
| | Sample_series_id | GSE33169
| | Sample_data_row_count | 54675
| | |
|
GSM821282 | GPL570 |
|
Negative-pressure-treated patient 3, intact skin sample
|
Punch biopsy from healthy intact skin
|
patient: patient 3
treatment: Negative-pressure-treated
|
|
| Sample_geo_accession | GSM821282
| | Sample_status | Public on Oct 25 2011
| | Sample_submission_date | Oct 24 2011
| | Sample_last_update_date | Oct 25 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | The skin biopsies were immediately immersed in RNAlater® (Qiagen) buffer, were incubated at +4°C for one day, and stored thereafter at -80°C until RNA isolation.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The skin samples were homogenized using the Precellys 24 tissue homogenizer with a Cryolys temperature controller unit (Bertin Technologies SA, Montigny-le-Bretonneux, France).Total RNA was extracted from the homogenized tissue samples with an RNeasy® mini kit (Qiagen) according to the manufacturer’s protocol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix GeneChip 3' IVT Express Kit
| | Sample_hyb_protocol | According to Affymetrix GeneChip Hybridization, Wash and Stain Kit
| | Sample_scan_protocol | Chip scanning was performed with a GeneChip Scanner 3000 7G (Affymetrix)
| | Sample_data_processing | Data analysis was performed with GeneSpring GX software, version 11.0.1 (Agilent Technologies), normalized to the median, and filtered by expression. Statistical analysis was performed, using GeneSpring GX software, version 11.0.1 (Agilent Technologies). Differences between the groups were compared using 2-way analysis of variance (ANOVA) with Benjamini-Hochberg posttesting.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Kristo,Juhana,Nuutila
| | Sample_contact_laboratory | Pharmacology
| | Sample_contact_department | Institute of Biomedicine
| | Sample_contact_institute | University of Helsinki
| | Sample_contact_address | Haartmaninkatu 8, Biomedicum 1
| | Sample_contact_city | Helsinki
| | Sample_contact_zip/postal_code | 00290
| | Sample_contact_country | Finland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM821nnn/GSM821282/suppl/GSM821282_NPWT3_intact.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM821nnn/GSM821282/suppl/GSM821282_NPWT3_intact.CHP.gz
| | Sample_series_id | GSE33169
| | Sample_data_row_count | 54675
| | |
|
GSM821283 | GPL570 |
|
Negative-pressure-treated patient 3, 7th post operative day sample
|
Punch biopsy from split-thickness skin graft donor site wound
|
patient: patient 3
treatment: Negative-pressure-treated
|
|
| Sample_geo_accession | GSM821283
| | Sample_status | Public on Oct 25 2011
| | Sample_submission_date | Oct 24 2011
| | Sample_last_update_date | Oct 25 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | The skin biopsies were immediately immersed in RNAlater® (Qiagen) buffer, were incubated at +4°C for one day, and stored thereafter at -80°C until RNA isolation.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The skin samples were homogenized using the Precellys 24 tissue homogenizer with a Cryolys temperature controller unit (Bertin Technologies SA, Montigny-le-Bretonneux, France).Total RNA was extracted from the homogenized tissue samples with an RNeasy® mini kit (Qiagen) according to the manufacturer’s protocol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix GeneChip 3' IVT Express Kit
| | Sample_hyb_protocol | According to Affymetrix GeneChip Hybridization, Wash and Stain Kit
| | Sample_scan_protocol | Chip scanning was performed with a GeneChip Scanner 3000 7G (Affymetrix)
| | Sample_data_processing | Data analysis was performed with GeneSpring GX software, version 11.0.1 (Agilent Technologies), normalized to the median, and filtered by expression. Statistical analysis was performed, using GeneSpring GX software, version 11.0.1 (Agilent Technologies). Differences between the groups were compared using 2-way analysis of variance (ANOVA) with Benjamini-Hochberg posttesting.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Kristo,Juhana,Nuutila
| | Sample_contact_laboratory | Pharmacology
| | Sample_contact_department | Institute of Biomedicine
| | Sample_contact_institute | University of Helsinki
| | Sample_contact_address | Haartmaninkatu 8, Biomedicum 1
| | Sample_contact_city | Helsinki
| | Sample_contact_zip/postal_code | 00290
| | Sample_contact_country | Finland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM821nnn/GSM821283/suppl/GSM821283_NPWT3_7POD.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM821nnn/GSM821283/suppl/GSM821283_NPWT3_7POD.CHP.gz
| | Sample_series_id | GSE33169
| | Sample_data_row_count | 54675
| | |
|
GSM821284 | GPL570 |
|
Negative-pressure-treated patient 4, intact skin sample
|
Punch biopsy from healthy intact skin
|
patient: patient 4
treatment: Negative-pressure-treated
|
|
| Sample_geo_accession | GSM821284
| | Sample_status | Public on Oct 25 2011
| | Sample_submission_date | Oct 24 2011
| | Sample_last_update_date | Oct 25 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | The skin biopsies were immediately immersed in RNAlater® (Qiagen) buffer, were incubated at +4°C for one day, and stored thereafter at -80°C until RNA isolation.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The skin samples were homogenized using the Precellys 24 tissue homogenizer with a Cryolys temperature controller unit (Bertin Technologies SA, Montigny-le-Bretonneux, France).Total RNA was extracted from the homogenized tissue samples with an RNeasy® mini kit (Qiagen) according to the manufacturer’s protocol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix GeneChip 3' IVT Express Kit
| | Sample_hyb_protocol | According to Affymetrix GeneChip Hybridization, Wash and Stain Kit
| | Sample_scan_protocol | Chip scanning was performed with a GeneChip Scanner 3000 7G (Affymetrix)
| | Sample_data_processing | Data analysis was performed with GeneSpring GX software, version 11.0.1 (Agilent Technologies), normalized to the median, and filtered by expression. Statistical analysis was performed, using GeneSpring GX software, version 11.0.1 (Agilent Technologies). Differences between the groups were compared using 2-way analysis of variance (ANOVA) with Benjamini-Hochberg posttesting.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Kristo,Juhana,Nuutila
| | Sample_contact_laboratory | Pharmacology
| | Sample_contact_department | Institute of Biomedicine
| | Sample_contact_institute | University of Helsinki
| | Sample_contact_address | Haartmaninkatu 8, Biomedicum 1
| | Sample_contact_city | Helsinki
| | Sample_contact_zip/postal_code | 00290
| | Sample_contact_country | Finland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM821nnn/GSM821284/suppl/GSM821284_NPWT4_intact.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM821nnn/GSM821284/suppl/GSM821284_NPWT4_intact.CHP.gz
| | Sample_series_id | GSE33169
| | Sample_data_row_count | 54675
| | |
|
GSM821285 | GPL570 |
|
Negative-pressure-treated patient 4, 7th post operative day sample
|
Punch biopsy from split-thickness skin graft donor site wound
|
patient: patient 4
treatment: Negative-pressure-treated
|
|
| Sample_geo_accession | GSM821285
| | Sample_status | Public on Oct 25 2011
| | Sample_submission_date | Oct 24 2011
| | Sample_last_update_date | Oct 25 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | The skin biopsies were immediately immersed in RNAlater® (Qiagen) buffer, were incubated at +4°C for one day, and stored thereafter at -80°C until RNA isolation.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The skin samples were homogenized using the Precellys 24 tissue homogenizer with a Cryolys temperature controller unit (Bertin Technologies SA, Montigny-le-Bretonneux, France).Total RNA was extracted from the homogenized tissue samples with an RNeasy® mini kit (Qiagen) according to the manufacturer’s protocol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix GeneChip 3' IVT Express Kit
| | Sample_hyb_protocol | According to Affymetrix GeneChip Hybridization, Wash and Stain Kit
| | Sample_scan_protocol | Chip scanning was performed with a GeneChip Scanner 3000 7G (Affymetrix)
| | Sample_data_processing | Data analysis was performed with GeneSpring GX software, version 11.0.1 (Agilent Technologies), normalized to the median, and filtered by expression. Statistical analysis was performed, using GeneSpring GX software, version 11.0.1 (Agilent Technologies). Differences between the groups were compared using 2-way analysis of variance (ANOVA) with Benjamini-Hochberg posttesting.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Kristo,Juhana,Nuutila
| | Sample_contact_laboratory | Pharmacology
| | Sample_contact_department | Institute of Biomedicine
| | Sample_contact_institute | University of Helsinki
| | Sample_contact_address | Haartmaninkatu 8, Biomedicum 1
| | Sample_contact_city | Helsinki
| | Sample_contact_zip/postal_code | 00290
| | Sample_contact_country | Finland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM821nnn/GSM821285/suppl/GSM821285_NPWT4_7POD.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM821nnn/GSM821285/suppl/GSM821285_NPWT4_7POD.CHP.gz
| | Sample_series_id | GSE33169
| | Sample_data_row_count | 54675
| | |
|
GSM821286 | GPL570 |
|
Control patient 1, intact skin sample
|
Punch biopsy from healthy intact skin
|
patient: patient 1
treatment: control
|
|
| Sample_geo_accession | GSM821286
| | Sample_status | Public on Oct 25 2011
| | Sample_submission_date | Oct 24 2011
| | Sample_last_update_date | Oct 25 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | The skin biopsies were immediately immersed in RNAlater® (Qiagen) buffer, were incubated at +4°C for one day, and stored thereafter at -80°C until RNA isolation.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The skin samples were homogenized using the Precellys 24 tissue homogenizer with a Cryolys temperature controller unit (Bertin Technologies SA, Montigny-le-Bretonneux, France).Total RNA was extracted from the homogenized tissue samples with an RNeasy® mini kit (Qiagen) according to the manufacturer’s protocol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix GeneChip 3' IVT Express Kit
| | Sample_hyb_protocol | According to Affymetrix GeneChip Hybridization, Wash and Stain Kit
| | Sample_scan_protocol | Chip scanning was performed with a GeneChip Scanner 3000 7G (Affymetrix)
| | Sample_data_processing | Data analysis was performed with GeneSpring GX software, version 11.0.1 (Agilent Technologies), normalized to the median, and filtered by expression. Statistical analysis was performed, using GeneSpring GX software, version 11.0.1 (Agilent Technologies). Differences between the groups were compared using 2-way analysis of variance (ANOVA) with Benjamini-Hochberg posttesting.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Kristo,Juhana,Nuutila
| | Sample_contact_laboratory | Pharmacology
| | Sample_contact_department | Institute of Biomedicine
| | Sample_contact_institute | University of Helsinki
| | Sample_contact_address | Haartmaninkatu 8, Biomedicum 1
| | Sample_contact_city | Helsinki
| | Sample_contact_zip/postal_code | 00290
| | Sample_contact_country | Finland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM821nnn/GSM821286/suppl/GSM821286_CTRL1_intact.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM821nnn/GSM821286/suppl/GSM821286_CTRL1_intact.CHP.gz
| | Sample_series_id | GSE33169
| | Sample_data_row_count | 54675
| | |
|
GSM821287 | GPL570 |
|
Control patient 1, 7th post operative day sample
|
Punch biopsy from split-thickness skin graft donor site wound
|
patient: patient 1
treatment: control
|
|
| Sample_geo_accession | GSM821287
| | Sample_status | Public on Oct 25 2011
| | Sample_submission_date | Oct 24 2011
| | Sample_last_update_date | Oct 25 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | The skin biopsies were immediately immersed in RNAlater® (Qiagen) buffer, were incubated at +4°C for one day, and stored thereafter at -80°C until RNA isolation.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The skin samples were homogenized using the Precellys 24 tissue homogenizer with a Cryolys temperature controller unit (Bertin Technologies SA, Montigny-le-Bretonneux, France).Total RNA was extracted from the homogenized tissue samples with an RNeasy® mini kit (Qiagen) according to the manufacturer’s protocol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix GeneChip 3' IVT Express Kit
| | Sample_hyb_protocol | According to Affymetrix GeneChip Hybridization, Wash and Stain Kit
| | Sample_scan_protocol | Chip scanning was performed with a GeneChip Scanner 3000 7G (Affymetrix)
| | Sample_data_processing | Data analysis was performed with GeneSpring GX software, version 11.0.1 (Agilent Technologies), normalized to the median, and filtered by expression. Statistical analysis was performed, using GeneSpring GX software, version 11.0.1 (Agilent Technologies). Differences between the groups were compared using 2-way analysis of variance (ANOVA) with Benjamini-Hochberg posttesting.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Kristo,Juhana,Nuutila
| | Sample_contact_laboratory | Pharmacology
| | Sample_contact_department | Institute of Biomedicine
| | Sample_contact_institute | University of Helsinki
| | Sample_contact_address | Haartmaninkatu 8, Biomedicum 1
| | Sample_contact_city | Helsinki
| | Sample_contact_zip/postal_code | 00290
| | Sample_contact_country | Finland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM821nnn/GSM821287/suppl/GSM821287_CTRL1_7POD.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM821nnn/GSM821287/suppl/GSM821287_CTRL1_7POD.CHP.gz
| | Sample_series_id | GSE33169
| | Sample_data_row_count | 54675
| | |
|
GSM821288 | GPL570 |
|
Control patient 2, intact skin sample
|
Punch biopsy from healthy intact skin
|
patient: patient 2
treatment: control
|
|
| Sample_geo_accession | GSM821288
| | Sample_status | Public on Oct 25 2011
| | Sample_submission_date | Oct 24 2011
| | Sample_last_update_date | Oct 25 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | The skin biopsies were immediately immersed in RNAlater® (Qiagen) buffer, were incubated at +4°C for one day, and stored thereafter at -80°C until RNA isolation.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The skin samples were homogenized using the Precellys 24 tissue homogenizer with a Cryolys temperature controller unit (Bertin Technologies SA, Montigny-le-Bretonneux, France).Total RNA was extracted from the homogenized tissue samples with an RNeasy® mini kit (Qiagen) according to the manufacturer’s protocol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix GeneChip 3' IVT Express Kit
| | Sample_hyb_protocol | According to Affymetrix GeneChip Hybridization, Wash and Stain Kit
| | Sample_scan_protocol | Chip scanning was performed with a GeneChip Scanner 3000 7G (Affymetrix)
| | Sample_data_processing | Data analysis was performed with GeneSpring GX software, version 11.0.1 (Agilent Technologies), normalized to the median, and filtered by expression. Statistical analysis was performed, using GeneSpring GX software, version 11.0.1 (Agilent Technologies). Differences between the groups were compared using 2-way analysis of variance (ANOVA) with Benjamini-Hochberg posttesting.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Kristo,Juhana,Nuutila
| | Sample_contact_laboratory | Pharmacology
| | Sample_contact_department | Institute of Biomedicine
| | Sample_contact_institute | University of Helsinki
| | Sample_contact_address | Haartmaninkatu 8, Biomedicum 1
| | Sample_contact_city | Helsinki
| | Sample_contact_zip/postal_code | 00290
| | Sample_contact_country | Finland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM821nnn/GSM821288/suppl/GSM821288_CTRL2_intact.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM821nnn/GSM821288/suppl/GSM821288_CTRL2_intact.CHP.gz
| | Sample_series_id | GSE33169
| | Sample_data_row_count | 54675
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GSM821289 | GPL570 |
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Control patient 2, 7th post operative day sample
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Punch biopsy from split-thickness skin graft donor site wound
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patient: patient 2
treatment: control
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| Sample_geo_accession | GSM821289
| | Sample_status | Public on Oct 25 2011
| | Sample_submission_date | Oct 24 2011
| | Sample_last_update_date | Oct 25 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | The skin biopsies were immediately immersed in RNAlater® (Qiagen) buffer, were incubated at +4°C for one day, and stored thereafter at -80°C until RNA isolation.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The skin samples were homogenized using the Precellys 24 tissue homogenizer with a Cryolys temperature controller unit (Bertin Technologies SA, Montigny-le-Bretonneux, France).Total RNA was extracted from the homogenized tissue samples with an RNeasy® mini kit (Qiagen) according to the manufacturer’s protocol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix GeneChip 3' IVT Express Kit
| | Sample_hyb_protocol | According to Affymetrix GeneChip Hybridization, Wash and Stain Kit
| | Sample_scan_protocol | Chip scanning was performed with a GeneChip Scanner 3000 7G (Affymetrix)
| | Sample_data_processing | Data analysis was performed with GeneSpring GX software, version 11.0.1 (Agilent Technologies), normalized to the median, and filtered by expression. Statistical analysis was performed, using GeneSpring GX software, version 11.0.1 (Agilent Technologies). Differences between the groups were compared using 2-way analysis of variance (ANOVA) with Benjamini-Hochberg posttesting.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Kristo,Juhana,Nuutila
| | Sample_contact_laboratory | Pharmacology
| | Sample_contact_department | Institute of Biomedicine
| | Sample_contact_institute | University of Helsinki
| | Sample_contact_address | Haartmaninkatu 8, Biomedicum 1
| | Sample_contact_city | Helsinki
| | Sample_contact_zip/postal_code | 00290
| | Sample_contact_country | Finland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM821nnn/GSM821289/suppl/GSM821289_CTRL2_7POD.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM821nnn/GSM821289/suppl/GSM821289_CTRL2_7POD.CHP.gz
| | Sample_series_id | GSE33169
| | Sample_data_row_count | 54675
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Make groups for comparisons |
(2 groups will be compared at a time) |
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| Select GSMs and click on "Add groups" |
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