Search results for the GEO ID: GSE33458  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM827614 | GPL570 |
|
143B-1251 Low
|
human osteosarcoma_orthotopic tumors_bone
|
source cell line: 143B
tissue source: orthotopic bone tumors
cell type: PKH26Lo cells (non-TICs)
tumor cell subpopulation: osteosarcoma bulk tumor cells
|
ZsGreen transduced tumor cells
143B_Bone_1251_Low_JS_05262010
|
| Sample_geo_accession | GSM827614
| | Sample_status | Public on Nov 04 2011
| | Sample_submission_date | Nov 03 2011
| | Sample_last_update_date | Nov 04 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions and RNA was further purified with QIAGEN DNAse I on column treatment.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from100ng total RNA (GeneChip 3' IVT Express kit, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip U133 plus 2 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Genechip Scanner 7G.
| | Sample_data_processing | Cel files were processed in BRB-ArrayTools using the Just-RMA algorithm
| | Sample_platform_id | GPL570
| | Sample_contact_name | Alexander,,Yu
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | Baylor College of Medicine
| | Sample_contact_address | 6621 Fannin, MC3-3320
| | Sample_contact_city | Houston
| | Sample_contact_state | TX
| | Sample_contact_zip/postal_code | 77030
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM827nnn/GSM827614/suppl/GSM827614_143B_Bone_1251_Low_JS_05262010.CEL.gz
| | Sample_series_id | GSE33458
| | Sample_data_row_count | 54675
| | |
|
GSM827615 | GPL570 |
|
143B-1252 Low
|
human osteosarcoma_orthotopic tumors_bone
|
source cell line: 143B
tissue source: orthotopic bone tumors
cell type: PKH26Lo cells (non-TICs)
tumor cell subpopulation: osteosarcoma bulk tumor cells
|
ZsGreen transduced tumor cells
143B_Bone_1252_Low_JS_05262010
|
| Sample_geo_accession | GSM827615
| | Sample_status | Public on Nov 04 2011
| | Sample_submission_date | Nov 03 2011
| | Sample_last_update_date | Nov 04 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions and RNA was further purified with QIAGEN DNAse I on column treatment.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from100ng total RNA (GeneChip 3' IVT Express kit, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip U133 plus 2 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Genechip Scanner 7G.
| | Sample_data_processing | Cel files were processed in BRB-ArrayTools using the Just-RMA algorithm
| | Sample_platform_id | GPL570
| | Sample_contact_name | Alexander,,Yu
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | Baylor College of Medicine
| | Sample_contact_address | 6621 Fannin, MC3-3320
| | Sample_contact_city | Houston
| | Sample_contact_state | TX
| | Sample_contact_zip/postal_code | 77030
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM827nnn/GSM827615/suppl/GSM827615_143B_Bone_1252_Low_JS_05262010.CEL.gz
| | Sample_series_id | GSE33458
| | Sample_data_row_count | 54675
| | |
|
GSM827616 | GPL570 |
|
143B-1253 High
|
human osteosarcoma_orthotopic tumors_bone
|
source cell line: 143B
tissue source: orthotopic bone tumors
cell type: PKH26Hi cells (TICs)
tumor cell subpopulation: osteosarcoma tumor-initiating cells
|
ZsGreen transduced tumor cells
143B_Bone_1253_High_JS_05262010
|
| Sample_geo_accession | GSM827616
| | Sample_status | Public on Nov 04 2011
| | Sample_submission_date | Nov 03 2011
| | Sample_last_update_date | Nov 04 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions and RNA was further purified with QIAGEN DNAse I on column treatment.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from100ng total RNA (GeneChip 3' IVT Express kit, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip U133 plus 2 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Genechip Scanner 7G.
| | Sample_data_processing | Cel files were processed in BRB-ArrayTools using the Just-RMA algorithm
| | Sample_platform_id | GPL570
| | Sample_contact_name | Alexander,,Yu
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | Baylor College of Medicine
| | Sample_contact_address | 6621 Fannin, MC3-3320
| | Sample_contact_city | Houston
| | Sample_contact_state | TX
| | Sample_contact_zip/postal_code | 77030
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM827nnn/GSM827616/suppl/GSM827616_143B_Bone_1253_High_JS_05262010.CEL.gz
| | Sample_series_id | GSE33458
| | Sample_data_row_count | 54675
| | |
|
GSM827617 | GPL570 |
|
143B-1253 Low
|
human osteosarcoma_orthotopic tumors_bone
|
source cell line: 143B
tissue source: orthotopic bone tumors
cell type: PKH26Lo cells (non-TICs)
tumor cell subpopulation: osteosarcoma bulk tumor cells
|
ZsGreen transduced tumor cells
143B_Bone_1253_Low_JS_05262010
|
| Sample_geo_accession | GSM827617
| | Sample_status | Public on Nov 04 2011
| | Sample_submission_date | Nov 03 2011
| | Sample_last_update_date | Nov 04 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions and RNA was further purified with QIAGEN DNAse I on column treatment.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from100ng total RNA (GeneChip 3' IVT Express kit, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip U133 plus 2 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Genechip Scanner 7G.
| | Sample_data_processing | Cel files were processed in BRB-ArrayTools using the Just-RMA algorithm
| | Sample_platform_id | GPL570
| | Sample_contact_name | Alexander,,Yu
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | Baylor College of Medicine
| | Sample_contact_address | 6621 Fannin, MC3-3320
| | Sample_contact_city | Houston
| | Sample_contact_state | TX
| | Sample_contact_zip/postal_code | 77030
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM827nnn/GSM827617/suppl/GSM827617_143B_Bone_1253_Low_JS_05262010.CEL.gz
| | Sample_series_id | GSE33458
| | Sample_data_row_count | 54675
| | |
|
GSM827618 | GPL570 |
|
143B-1254 Low
|
human osteosarcoma_orthotopic tumors_bone
|
source cell line: 143B
tissue source: orthotopic bone tumors
cell type: PKH26Lo cells (non-TICs)
tumor cell subpopulation: osteosarcoma bulk tumor cells
|
ZsGreen transduced tumor cells
143B_Bone_1254_Low_JS_05262010
|
| Sample_geo_accession | GSM827618
| | Sample_status | Public on Nov 04 2011
| | Sample_submission_date | Nov 03 2011
| | Sample_last_update_date | Nov 04 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions and RNA was further purified with QIAGEN DNAse I on column treatment.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from100ng total RNA (GeneChip 3' IVT Express kit, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip U133 plus 2 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Genechip Scanner 7G.
| | Sample_data_processing | Cel files were processed in BRB-ArrayTools using the Just-RMA algorithm
| | Sample_platform_id | GPL570
| | Sample_contact_name | Alexander,,Yu
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | Baylor College of Medicine
| | Sample_contact_address | 6621 Fannin, MC3-3320
| | Sample_contact_city | Houston
| | Sample_contact_state | TX
| | Sample_contact_zip/postal_code | 77030
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM827nnn/GSM827618/suppl/GSM827618_143B_Bone_1254_Low_JS_05262010.CEL.gz
| | Sample_series_id | GSE33458
| | Sample_data_row_count | 54675
| | |
|
GSM827619 | GPL570 |
|
143B-1255 Low
|
human osteosarcoma_orthotopic tumors_bone
|
source cell line: 143B
tissue source: orthotopic bone tumors
cell type: PKH26Lo cells (non-TICs)
tumor cell subpopulation: osteosarcoma bulk tumor cells
|
ZsGreen transduced tumor cells
143B_Bone_1255_Low_JS_05262010
|
| Sample_geo_accession | GSM827619
| | Sample_status | Public on Nov 04 2011
| | Sample_submission_date | Nov 03 2011
| | Sample_last_update_date | Nov 04 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions and RNA was further purified with QIAGEN DNAse I on column treatment.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from100ng total RNA (GeneChip 3' IVT Express kit, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip U133 plus 2 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Genechip Scanner 7G.
| | Sample_data_processing | Cel files were processed in BRB-ArrayTools using the Just-RMA algorithm
| | Sample_platform_id | GPL570
| | Sample_contact_name | Alexander,,Yu
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | Baylor College of Medicine
| | Sample_contact_address | 6621 Fannin, MC3-3320
| | Sample_contact_city | Houston
| | Sample_contact_state | TX
| | Sample_contact_zip/postal_code | 77030
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM827nnn/GSM827619/suppl/GSM827619_143B_Bone_1255_Low_JS_05262010.CEL.gz
| | Sample_series_id | GSE33458
| | Sample_data_row_count | 54675
| | |
|
GSM827620 | GPL570 |
|
143B-51&52 High
|
human osteosarcoma_orthotopic tumors_bone
|
source cell line: 143B
tissue source: orthotopic bone tumors
cell type: PKH26Hi cells (TICs)
tumor cell subpopulation: osteosarcoma tumor-initiating cells
|
ZsGreen transduced tumor cells
143B_Bone_51&52_High_JS_05262010
|
| Sample_geo_accession | GSM827620
| | Sample_status | Public on Nov 04 2011
| | Sample_submission_date | Nov 03 2011
| | Sample_last_update_date | Nov 04 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions and RNA was further purified with QIAGEN DNAse I on column treatment.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from100ng total RNA (GeneChip 3' IVT Express kit, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip U133 plus 2 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Genechip Scanner 7G.
| | Sample_data_processing | Cel files were processed in BRB-ArrayTools using the Just-RMA algorithm
| | Sample_platform_id | GPL570
| | Sample_contact_name | Alexander,,Yu
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | Baylor College of Medicine
| | Sample_contact_address | 6621 Fannin, MC3-3320
| | Sample_contact_city | Houston
| | Sample_contact_state | TX
| | Sample_contact_zip/postal_code | 77030
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM827nnn/GSM827620/suppl/GSM827620_143B_Bone_51_52_High_JS_05262010.CEL.gz
| | Sample_series_id | GSE33458
| | Sample_data_row_count | 54675
| | |
|
GSM827621 | GPL570 |
|
143B-54&55 High
|
human osteosarcoma_orthotopic tumors_bone
|
source cell line: 143B
tissue source: orthotopic bone tumors
cell type: PKH26Hi cells (TICs)
tumor cell subpopulation: osteosarcoma tumor-initiating cells
|
ZsGreen transduced tumor cells
143B_Bone_54&55_High_JS_05262010
|
| Sample_geo_accession | GSM827621
| | Sample_status | Public on Nov 04 2011
| | Sample_submission_date | Nov 03 2011
| | Sample_last_update_date | Nov 04 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions and RNA was further purified with QIAGEN DNAse I on column treatment.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from100ng total RNA (GeneChip 3' IVT Express kit, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip U133 plus 2 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Genechip Scanner 7G.
| | Sample_data_processing | Cel files were processed in BRB-ArrayTools using the Just-RMA algorithm
| | Sample_platform_id | GPL570
| | Sample_contact_name | Alexander,,Yu
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | Baylor College of Medicine
| | Sample_contact_address | 6621 Fannin, MC3-3320
| | Sample_contact_city | Houston
| | Sample_contact_state | TX
| | Sample_contact_zip/postal_code | 77030
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM827nnn/GSM827621/suppl/GSM827621_143B_Bone_54_55_High_JS_05262010.CEL.gz
| | Sample_series_id | GSE33458
| | Sample_data_row_count | 54675
| | |
|
GSM827622 | GPL570 |
|
MNNG-1231 High
|
human osteosarcoma_orthotopic tumors_bone
|
source cell line: MNNG/HOS
tissue source: orthotopic bone tumors
cell type: PKH26Hi cells (TICs)
tumor cell subpopulation: osteosarcoma tumor-initiating cells
|
ZsGreen transduced tumor cells
MNNG_Bone_1231_High_JS_05122010
|
| Sample_geo_accession | GSM827622
| | Sample_status | Public on Nov 04 2011
| | Sample_submission_date | Nov 03 2011
| | Sample_last_update_date | Nov 04 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions and RNA was further purified with QIAGEN DNAse I on column treatment.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from100ng total RNA (GeneChip 3' IVT Express kit, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip U133 plus 2 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Genechip Scanner 7G.
| | Sample_data_processing | Cel files were processed in BRB-ArrayTools using the Just-RMA algorithm
| | Sample_platform_id | GPL570
| | Sample_contact_name | Alexander,,Yu
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | Baylor College of Medicine
| | Sample_contact_address | 6621 Fannin, MC3-3320
| | Sample_contact_city | Houston
| | Sample_contact_state | TX
| | Sample_contact_zip/postal_code | 77030
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM827nnn/GSM827622/suppl/GSM827622_MNNG_Bone_1231_High_JS_05122010.CEL.gz
| | Sample_series_id | GSE33458
| | Sample_data_row_count | 54675
| | |
|
GSM827623 | GPL570 |
|
MNNG-1231 Low
|
human osteosarcoma_orthotopic tumors_bone
|
source cell line: MNNG/HOS
tissue source: orthotopic bone tumors
cell type: PKH26Lo cells (non-TICs)
tumor cell subpopulation: osteosarcoma bulk tumor cells
|
ZsGreen transduced tumor cells
MNNG_Bone_1231_low_JS_05122010
|
| Sample_geo_accession | GSM827623
| | Sample_status | Public on Nov 04 2011
| | Sample_submission_date | Nov 03 2011
| | Sample_last_update_date | Nov 04 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions and RNA was further purified with QIAGEN DNAse I on column treatment.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from100ng total RNA (GeneChip 3' IVT Express kit, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip U133 plus 2 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Genechip Scanner 7G.
| | Sample_data_processing | Cel files were processed in BRB-ArrayTools using the Just-RMA algorithm
| | Sample_platform_id | GPL570
| | Sample_contact_name | Alexander,,Yu
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | Baylor College of Medicine
| | Sample_contact_address | 6621 Fannin, MC3-3320
| | Sample_contact_city | Houston
| | Sample_contact_state | TX
| | Sample_contact_zip/postal_code | 77030
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM827nnn/GSM827623/suppl/GSM827623_MNNG_Bone_1231_low_JS_05122010.CEL.gz
| | Sample_series_id | GSE33458
| | Sample_data_row_count | 54675
| | |
|
GSM827624 | GPL570 |
|
MNNG-1232 High
|
human osteosarcoma_orthotopic tumors_bone
|
source cell line: MNNG/HOS
tissue source: orthotopic bone tumors
cell type: PKH26Hi cells (TICs)
tumor cell subpopulation: osteosarcoma tumor-initiating cells
|
ZsGreen transduced tumor cells
MNNG_Bone_1232_high_JS_05122010
|
| Sample_geo_accession | GSM827624
| | Sample_status | Public on Nov 04 2011
| | Sample_submission_date | Nov 03 2011
| | Sample_last_update_date | Nov 04 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions and RNA was further purified with QIAGEN DNAse I on column treatment.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from100ng total RNA (GeneChip 3' IVT Express kit, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip U133 plus 2 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Genechip Scanner 7G.
| | Sample_data_processing | Cel files were processed in BRB-ArrayTools using the Just-RMA algorithm
| | Sample_platform_id | GPL570
| | Sample_contact_name | Alexander,,Yu
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | Baylor College of Medicine
| | Sample_contact_address | 6621 Fannin, MC3-3320
| | Sample_contact_city | Houston
| | Sample_contact_state | TX
| | Sample_contact_zip/postal_code | 77030
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM827nnn/GSM827624/suppl/GSM827624_MNNG_Bone_1232_high_JS_05122010.CEL.gz
| | Sample_series_id | GSE33458
| | Sample_data_row_count | 54675
| | |
|
GSM827625 | GPL570 |
|
MNNG-1232 Low
|
human osteosarcoma_orthotopic tumors_bone
|
source cell line: MNNG/HOS
tissue source: orthotopic bone tumors
cell type: PKH26Lo cells (non-TICs)
tumor cell subpopulation: osteosarcoma bulk tumor cells
|
ZsGreen transduced tumor cells
MNNG_Bone_1232_low_JS_05062010
|
| Sample_geo_accession | GSM827625
| | Sample_status | Public on Nov 04 2011
| | Sample_submission_date | Nov 03 2011
| | Sample_last_update_date | Nov 04 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions and RNA was further purified with QIAGEN DNAse I on column treatment.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from100ng total RNA (GeneChip 3' IVT Express kit, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip U133 plus 2 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Genechip Scanner 7G.
| | Sample_data_processing | Cel files were processed in BRB-ArrayTools using the Just-RMA algorithm
| | Sample_platform_id | GPL570
| | Sample_contact_name | Alexander,,Yu
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | Baylor College of Medicine
| | Sample_contact_address | 6621 Fannin, MC3-3320
| | Sample_contact_city | Houston
| | Sample_contact_state | TX
| | Sample_contact_zip/postal_code | 77030
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM827nnn/GSM827625/suppl/GSM827625_MNNG_Bone_1232_low_JS_05062010.CEL.gz
| | Sample_series_id | GSE33458
| | Sample_data_row_count | 54675
| | |
|
GSM827626 | GPL570 |
|
MNNG-1233 High
|
human osteosarcoma_orthotopic tumors_bone
|
source cell line: MNNG/HOS
tissue source: orthotopic bone tumors
cell type: PKH26Hi cells (TICs)
tumor cell subpopulation: osteosarcoma tumor-initiating cells
|
ZsGreen transduced tumor cells
MNNG_Bone_1233_high_JS_05122010
|
| Sample_geo_accession | GSM827626
| | Sample_status | Public on Nov 04 2011
| | Sample_submission_date | Nov 03 2011
| | Sample_last_update_date | Nov 04 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions and RNA was further purified with QIAGEN DNAse I on column treatment.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from100ng total RNA (GeneChip 3' IVT Express kit, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip U133 plus 2 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Genechip Scanner 7G.
| | Sample_data_processing | Cel files were processed in BRB-ArrayTools using the Just-RMA algorithm
| | Sample_platform_id | GPL570
| | Sample_contact_name | Alexander,,Yu
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | Baylor College of Medicine
| | Sample_contact_address | 6621 Fannin, MC3-3320
| | Sample_contact_city | Houston
| | Sample_contact_state | TX
| | Sample_contact_zip/postal_code | 77030
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM827nnn/GSM827626/suppl/GSM827626_MNNG_Bone_1233_high_JS_05122010.CEL.gz
| | Sample_series_id | GSE33458
| | Sample_data_row_count | 54675
| | |
|
GSM827627 | GPL570 |
|
MNNG-1233 Low
|
human osteosarcoma_orthotopic tumors_bone
|
source cell line: MNNG/HOS
tissue source: orthotopic bone tumors
cell type: PKH26Lo cells (non-TICs)
tumor cell subpopulation: osteosarcoma bulk tumor cells
|
ZsGreen transduced tumor cells
MNNG_Bone_1233_low_JS_05062010
|
| Sample_geo_accession | GSM827627
| | Sample_status | Public on Nov 04 2011
| | Sample_submission_date | Nov 03 2011
| | Sample_last_update_date | Nov 04 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions and RNA was further purified with QIAGEN DNAse I on column treatment.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from100ng total RNA (GeneChip 3' IVT Express kit, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip U133 plus 2 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Genechip Scanner 7G.
| | Sample_data_processing | Cel files were processed in BRB-ArrayTools using the Just-RMA algorithm
| | Sample_platform_id | GPL570
| | Sample_contact_name | Alexander,,Yu
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | Baylor College of Medicine
| | Sample_contact_address | 6621 Fannin, MC3-3320
| | Sample_contact_city | Houston
| | Sample_contact_state | TX
| | Sample_contact_zip/postal_code | 77030
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM827nnn/GSM827627/suppl/GSM827627_MNNG_Bone_1233_low_JS_05062010.CEL.gz
| | Sample_series_id | GSE33458
| | Sample_data_row_count | 54675
| | |
|
GSM827628 | GPL570 |
|
MNNG-1235 High
|
human osteosarcoma_orthotopic tumors_bone
|
source cell line: MNNG/HOS
tissue source: orthotopic bone tumors
cell type: PKH26Hi cells (TICs)
tumor cell subpopulation: osteosarcoma tumor-initiating cells
|
ZsGreen transduced tumor cells
MNNG_Bone_1235_high_JS_05122010
|
| Sample_geo_accession | GSM827628
| | Sample_status | Public on Nov 04 2011
| | Sample_submission_date | Nov 03 2011
| | Sample_last_update_date | Nov 04 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions and RNA was further purified with QIAGEN DNAse I on column treatment.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from100ng total RNA (GeneChip 3' IVT Express kit, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip U133 plus 2 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Genechip Scanner 7G.
| | Sample_data_processing | Cel files were processed in BRB-ArrayTools using the Just-RMA algorithm
| | Sample_platform_id | GPL570
| | Sample_contact_name | Alexander,,Yu
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | Baylor College of Medicine
| | Sample_contact_address | 6621 Fannin, MC3-3320
| | Sample_contact_city | Houston
| | Sample_contact_state | TX
| | Sample_contact_zip/postal_code | 77030
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM827nnn/GSM827628/suppl/GSM827628_MNNG_Bone_1235_high_JS_05122010.CEL.gz
| | Sample_series_id | GSE33458
| | Sample_data_row_count | 54675
| | |
|
GSM827629 | GPL570 |
|
MNNG-1235 Low
|
human osteosarcoma_orthotopic tumors_bone
|
source cell line: MNNG/HOS
tissue source: orthotopic bone tumors
cell type: PKH26Lo cells (non-TICs)
tumor cell subpopulation: osteosarcoma bulk tumor cells
|
ZsGreen transduced tumor cells
MNNG_Bone_1235_low_JS_05062010
|
| Sample_geo_accession | GSM827629
| | Sample_status | Public on Nov 04 2011
| | Sample_submission_date | Nov 03 2011
| | Sample_last_update_date | Nov 04 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions and RNA was further purified with QIAGEN DNAse I on column treatment.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from100ng total RNA (GeneChip 3' IVT Express kit, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip U133 plus 2 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Genechip Scanner 7G.
| | Sample_data_processing | Cel files were processed in BRB-ArrayTools using the Just-RMA algorithm
| | Sample_platform_id | GPL570
| | Sample_contact_name | Alexander,,Yu
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | Baylor College of Medicine
| | Sample_contact_address | 6621 Fannin, MC3-3320
| | Sample_contact_city | Houston
| | Sample_contact_state | TX
| | Sample_contact_zip/postal_code | 77030
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM827nnn/GSM827629/suppl/GSM827629_MNNG_Bone_1235_low_JS_05062010.CEL.gz
| | Sample_series_id | GSE33458
| | Sample_data_row_count | 54675
| | |
|
GSM827630 | GPL570 |
|
MNNG-Lung 1233
|
human osteosarcoma_orthotopic transplant_lung metastasis
|
source cell line: MNNG/HOS
tissue source: orthotopic transplant_lung metastasis
tumor cell subpopulation: osteosarcoma lung metastasis
|
ZsGreen transduced tumor cells
MNNG_Lung_1233_JS_05122010
|
| Sample_geo_accession | GSM827630
| | Sample_status | Public on Nov 04 2011
| | Sample_submission_date | Nov 03 2011
| | Sample_last_update_date | Nov 04 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions and RNA was further purified with QIAGEN DNAse I on column treatment.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from100ng total RNA (GeneChip 3' IVT Express kit, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip U133 plus 2 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Genechip Scanner 7G.
| | Sample_data_processing | Cel files were processed in BRB-ArrayTools using the Just-RMA algorithm
| | Sample_platform_id | GPL570
| | Sample_contact_name | Alexander,,Yu
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | Baylor College of Medicine
| | Sample_contact_address | 6621 Fannin, MC3-3320
| | Sample_contact_city | Houston
| | Sample_contact_state | TX
| | Sample_contact_zip/postal_code | 77030
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM827nnn/GSM827630/suppl/GSM827630_MNNG_Lung_1233_low_JS_05122010.CEL.gz
| | Sample_series_id | GSE33458
| | Sample_data_row_count | 54675
| | |
|
GSM827631 | GPL570 |
|
MNNG-Lung Mix
|
human osteosarcoma_orthotopic transplant_lung metastasis
|
source cell line: MNNG/HOS
tissue source: orthotopic transplant_lung metastasis
tumor cell subpopulation: osteosarcoma lung metastasis
|
ZsGreen transduced tumor cells
MNNG_Lung_Mix_JS_05122010
|
| Sample_geo_accession | GSM827631
| | Sample_status | Public on Nov 04 2011
| | Sample_submission_date | Nov 03 2011
| | Sample_last_update_date | Nov 04 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions and RNA was further purified with QIAGEN DNAse I on column treatment.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from100ng total RNA (GeneChip 3' IVT Express kit, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip U133 plus 2 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Genechip Scanner 7G.
| | Sample_data_processing | Cel files were processed in BRB-ArrayTools using the Just-RMA algorithm
| | Sample_platform_id | GPL570
| | Sample_contact_name | Alexander,,Yu
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | Baylor College of Medicine
| | Sample_contact_address | 6621 Fannin, MC3-3320
| | Sample_contact_city | Houston
| | Sample_contact_state | TX
| | Sample_contact_zip/postal_code | 77030
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM827nnn/GSM827631/suppl/GSM827631_MNNG_Lung_Mix_low_JS_05122010.CEL.gz
| | Sample_series_id | GSE33458
| | Sample_data_row_count | 54675
| | |
|
| |
| |
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