Search results for the GEO ID: GSE33474  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM828146 | GPL1261 |
|
Wild Type bone marrow B220+, biological replicate 1
|
Wild Type bone marrow B220+
|
strain background: 94% C57BL/6
genotype/variation: wild type
age: 4-6wks
cell type: bone marrow B220+
|
Gene expression data of bone marrow B220+ cells from 4-6 weeks old Eμ-Myc;Eµ-TTP-1 littermates.
|
| Sample_geo_accession | GSM828146
| | Sample_status | Public on Aug 02 2012
| | Sample_submission_date | Nov 04 2011
| | Sample_last_update_date | Aug 02 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | B cells were isolated from bone marrow by MACS using CD45R (B220) MicroBeads (Miltenyi Biotec). RNA was prepared using the NucleoSpin RNA II kit (Macherey-Nagel).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | cRNA was synthesized using an IVT labeling kit (Affymetrix), with the cRNA product purified using a GeneChip Sample Cleanup Module (Affymetrix).
| | Sample_hyb_protocol | 20 μg biotin-labeled cRNA was fragmented and hybridized to Affymetrix GeneChip MOE430 2.0 microarrays overnight in the Affy 640 hybridization oven with a speed of 60 rpm for 16 hr. Microarrays were washed and stained using the Affymetrix Fluidics Station FS400.
| | Sample_scan_protocol | GeneChip arrays were scanned using a GeneChip Scanner 3000 (Affymetrix). The probe set intensities were quantified using the GeneChip Operating Software (GCOS). All hybridized chips met standard quality control criteria.
| | Sample_data_processing | The data were analyzed using GeneSpring GX version 11 based on GCRMA analysis default settings.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | John,Lamoine,Cleveland
| | Sample_contact_email | jcleve@scripps.edu
| | Sample_contact_phone | (561) 228-3200
| | Sample_contact_fax | (561) 228-3072
| | Sample_contact_department | Cancer Biology
| | Sample_contact_institute | The Scripps Research Institute
| | Sample_contact_address | 130 Scripps Way
| | Sample_contact_city | Jupiter
| | Sample_contact_state | FL
| | Sample_contact_zip/postal_code | 33458
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM828nnn/GSM828146/suppl/GSM828146_EA95.CEL.gz
| | Sample_series_id | GSE33474
| | Sample_series_id | GSE37792
| | Sample_data_row_count | 45101
| | |
|
GSM828147 | GPL1261 |
|
Wild Type bone marrow B220+, biological replicate 2
|
Wild Type bone marrow B220+
|
strain background: 94% C57BL/6
genotype/variation: wild type
age: 4-6wks
cell type: bone marrow B220+
|
Gene expression data of bone marrow B220+ cells from 4-6 weeks old Eμ-Myc;Eµ-TTP-1 littermates.
|
| Sample_geo_accession | GSM828147
| | Sample_status | Public on Aug 02 2012
| | Sample_submission_date | Nov 04 2011
| | Sample_last_update_date | Aug 02 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | B cells were isolated from bone marrow by MACS using CD45R (B220) MicroBeads (Miltenyi Biotec). RNA was prepared using the NucleoSpin RNA II kit (Macherey-Nagel).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | cRNA was synthesized using an IVT labeling kit (Affymetrix), with the cRNA product purified using a GeneChip Sample Cleanup Module (Affymetrix).
| | Sample_hyb_protocol | 20 μg biotin-labeled cRNA was fragmented and hybridized to Affymetrix GeneChip MOE430 2.0 microarrays overnight in the Affy 640 hybridization oven with a speed of 60 rpm for 16 hr. Microarrays were washed and stained using the Affymetrix Fluidics Station FS400.
| | Sample_scan_protocol | GeneChip arrays were scanned using a GeneChip Scanner 3000 (Affymetrix). The probe set intensities were quantified using the GeneChip Operating Software (GCOS). All hybridized chips met standard quality control criteria.
| | Sample_data_processing | The data were analyzed using GeneSpring GX version 11 based on GCRMA analysis default settings.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | John,Lamoine,Cleveland
| | Sample_contact_email | jcleve@scripps.edu
| | Sample_contact_phone | (561) 228-3200
| | Sample_contact_fax | (561) 228-3072
| | Sample_contact_department | Cancer Biology
| | Sample_contact_institute | The Scripps Research Institute
| | Sample_contact_address | 130 Scripps Way
| | Sample_contact_city | Jupiter
| | Sample_contact_state | FL
| | Sample_contact_zip/postal_code | 33458
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM828nnn/GSM828147/suppl/GSM828147_EA97.CEL.gz
| | Sample_series_id | GSE33474
| | Sample_series_id | GSE37792
| | Sample_data_row_count | 45101
| | |
|
GSM828148 | GPL1261 |
|
Wild Type bone marrow B220+, biological replicate 3
|
Wild Type bone marrow B220+
|
strain background: 94% C57BL/6
genotype/variation: wild type
age: 4-6wks
cell type: bone marrow B220+
|
Gene expression data of bone marrow B220+ cells from 4-6 weeks old Eμ-Myc;Eµ-TTP-1 littermates.
|
| Sample_geo_accession | GSM828148
| | Sample_status | Public on Aug 02 2012
| | Sample_submission_date | Nov 04 2011
| | Sample_last_update_date | Aug 02 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | B cells were isolated from bone marrow by MACS using CD45R (B220) MicroBeads (Miltenyi Biotec). RNA was prepared using the NucleoSpin RNA II kit (Macherey-Nagel).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | cRNA was synthesized using an IVT labeling kit (Affymetrix), with the cRNA product purified using a GeneChip Sample Cleanup Module (Affymetrix).
| | Sample_hyb_protocol | 20 μg biotin-labeled cRNA was fragmented and hybridized to Affymetrix GeneChip MOE430 2.0 microarrays overnight in the Affy 640 hybridization oven with a speed of 60 rpm for 16 hr. Microarrays were washed and stained using the Affymetrix Fluidics Station FS400.
| | Sample_scan_protocol | GeneChip arrays were scanned using a GeneChip Scanner 3000 (Affymetrix). The probe set intensities were quantified using the GeneChip Operating Software (GCOS). All hybridized chips met standard quality control criteria.
| | Sample_data_processing | The data were analyzed using GeneSpring GX version 11 based on GCRMA analysis default settings.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | John,Lamoine,Cleveland
| | Sample_contact_email | jcleve@scripps.edu
| | Sample_contact_phone | (561) 228-3200
| | Sample_contact_fax | (561) 228-3072
| | Sample_contact_department | Cancer Biology
| | Sample_contact_institute | The Scripps Research Institute
| | Sample_contact_address | 130 Scripps Way
| | Sample_contact_city | Jupiter
| | Sample_contact_state | FL
| | Sample_contact_zip/postal_code | 33458
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM828nnn/GSM828148/suppl/GSM828148_EA99.CEL.gz
| | Sample_series_id | GSE33474
| | Sample_series_id | GSE37792
| | Sample_data_row_count | 45101
| | |
|
GSM828149 | GPL1261 |
|
Eµ-TTP-1 bone marrow B220+, biological replicate 1
|
Eµ-TTP-1 bone marrow B220+
|
strain background: 94% C57BL/6
genotype/variation: Eµ-TTP-1 transgenic
age: 4-6wks
cell type: bone marrow B220+
|
Gene expression data of bone marrow B220+ cells from 4-6 weeks old Eμ-Myc;Eµ-TTP-1 littermates.
|
| Sample_geo_accession | GSM828149
| | Sample_status | Public on Aug 02 2012
| | Sample_submission_date | Nov 04 2011
| | Sample_last_update_date | Aug 02 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | B cells were isolated from bone marrow by MACS using CD45R (B220) MicroBeads (Miltenyi Biotec). RNA was prepared using the NucleoSpin RNA II kit (Macherey-Nagel).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | cRNA was synthesized using an IVT labeling kit (Affymetrix), with the cRNA product purified using a GeneChip Sample Cleanup Module (Affymetrix).
| | Sample_hyb_protocol | 20 μg biotin-labeled cRNA was fragmented and hybridized to Affymetrix GeneChip MOE430 2.0 microarrays overnight in the Affy 640 hybridization oven with a speed of 60 rpm for 16 hr. Microarrays were washed and stained using the Affymetrix Fluidics Station FS400.
| | Sample_scan_protocol | GeneChip arrays were scanned using a GeneChip Scanner 3000 (Affymetrix). The probe set intensities were quantified using the GeneChip Operating Software (GCOS). All hybridized chips met standard quality control criteria.
| | Sample_data_processing | The data were analyzed using GeneSpring GX version 11 based on GCRMA analysis default settings.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | John,Lamoine,Cleveland
| | Sample_contact_email | jcleve@scripps.edu
| | Sample_contact_phone | (561) 228-3200
| | Sample_contact_fax | (561) 228-3072
| | Sample_contact_department | Cancer Biology
| | Sample_contact_institute | The Scripps Research Institute
| | Sample_contact_address | 130 Scripps Way
| | Sample_contact_city | Jupiter
| | Sample_contact_state | FL
| | Sample_contact_zip/postal_code | 33458
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM828nnn/GSM828149/suppl/GSM828149_EA85.CEL.gz
| | Sample_series_id | GSE33474
| | Sample_series_id | GSE37792
| | Sample_data_row_count | 45101
| | |
|
GSM828150 | GPL1261 |
|
Eµ-TTP-1 bone marrow B220+, biological replicate 2
|
Eµ-TTP-1 bone marrow B220+
|
strain background: 94% C57BL/6
genotype/variation: Eµ-TTP-1 transgenic
age: 4-6wks
cell type: bone marrow B220+
|
Gene expression data of bone marrow B220+ cells from 4-6 weeks old Eμ-Myc;Eµ-TTP-1 littermates.
|
| Sample_geo_accession | GSM828150
| | Sample_status | Public on Aug 02 2012
| | Sample_submission_date | Nov 04 2011
| | Sample_last_update_date | Aug 02 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | B cells were isolated from bone marrow by MACS using CD45R (B220) MicroBeads (Miltenyi Biotec). RNA was prepared using the NucleoSpin RNA II kit (Macherey-Nagel).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | cRNA was synthesized using an IVT labeling kit (Affymetrix), with the cRNA product purified using a GeneChip Sample Cleanup Module (Affymetrix).
| | Sample_hyb_protocol | 20 μg biotin-labeled cRNA was fragmented and hybridized to Affymetrix GeneChip MOE430 2.0 microarrays overnight in the Affy 640 hybridization oven with a speed of 60 rpm for 16 hr. Microarrays were washed and stained using the Affymetrix Fluidics Station FS400.
| | Sample_scan_protocol | GeneChip arrays were scanned using a GeneChip Scanner 3000 (Affymetrix). The probe set intensities were quantified using the GeneChip Operating Software (GCOS). All hybridized chips met standard quality control criteria.
| | Sample_data_processing | The data were analyzed using GeneSpring GX version 11 based on GCRMA analysis default settings.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | John,Lamoine,Cleveland
| | Sample_contact_email | jcleve@scripps.edu
| | Sample_contact_phone | (561) 228-3200
| | Sample_contact_fax | (561) 228-3072
| | Sample_contact_department | Cancer Biology
| | Sample_contact_institute | The Scripps Research Institute
| | Sample_contact_address | 130 Scripps Way
| | Sample_contact_city | Jupiter
| | Sample_contact_state | FL
| | Sample_contact_zip/postal_code | 33458
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM828nnn/GSM828150/suppl/GSM828150_EA94.CEL.gz
| | Sample_series_id | GSE33474
| | Sample_series_id | GSE37792
| | Sample_data_row_count | 45101
| | |
|
GSM828151 | GPL1261 |
|
Eµ-TTP-1 bone marrow B220+, biological replicate 3
|
Eµ-TTP-1 bone marrow B220+
|
strain background: 94% C57BL/6
genotype/variation: Eµ-TTP-1 transgenic
age: 4-6wks
cell type: bone marrow B220+
|
Gene expression data of bone marrow B220+ cells from 4-6 weeks old Eμ-Myc;Eµ-TTP-1 littermates.
|
| Sample_geo_accession | GSM828151
| | Sample_status | Public on Aug 02 2012
| | Sample_submission_date | Nov 04 2011
| | Sample_last_update_date | Aug 02 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | B cells were isolated from bone marrow by MACS using CD45R (B220) MicroBeads (Miltenyi Biotec). RNA was prepared using the NucleoSpin RNA II kit (Macherey-Nagel).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | cRNA was synthesized using an IVT labeling kit (Affymetrix), with the cRNA product purified using a GeneChip Sample Cleanup Module (Affymetrix).
| | Sample_hyb_protocol | 20 μg biotin-labeled cRNA was fragmented and hybridized to Affymetrix GeneChip MOE430 2.0 microarrays overnight in the Affy 640 hybridization oven with a speed of 60 rpm for 16 hr. Microarrays were washed and stained using the Affymetrix Fluidics Station FS400.
| | Sample_scan_protocol | GeneChip arrays were scanned using a GeneChip Scanner 3000 (Affymetrix). The probe set intensities were quantified using the GeneChip Operating Software (GCOS). All hybridized chips met standard quality control criteria.
| | Sample_data_processing | The data were analyzed using GeneSpring GX version 11 based on GCRMA analysis default settings.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | John,Lamoine,Cleveland
| | Sample_contact_email | jcleve@scripps.edu
| | Sample_contact_phone | (561) 228-3200
| | Sample_contact_fax | (561) 228-3072
| | Sample_contact_department | Cancer Biology
| | Sample_contact_institute | The Scripps Research Institute
| | Sample_contact_address | 130 Scripps Way
| | Sample_contact_city | Jupiter
| | Sample_contact_state | FL
| | Sample_contact_zip/postal_code | 33458
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM828nnn/GSM828151/suppl/GSM828151_EA101.CEL.gz
| | Sample_series_id | GSE33474
| | Sample_series_id | GSE37792
| | Sample_data_row_count | 45101
| | |
|
GSM828152 | GPL1261 |
|
Eμ-Myc bone marrow B220+, biological replicate 1
|
Eμ-Myc bone marrow B220+
|
strain background: 94% C57BL/6
genotype/variation: precancerous Eμ-Myc transgenic
age: 4-6wks
cell type: bone marrow B220+
|
Gene expression data of bone marrow B220+ cells from 4-6 weeks old Eμ-Myc;Eµ-TTP-1 littermates.
|
| Sample_geo_accession | GSM828152
| | Sample_status | Public on Aug 02 2012
| | Sample_submission_date | Nov 04 2011
| | Sample_last_update_date | Aug 02 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | B cells were isolated from bone marrow by MACS using CD45R (B220) MicroBeads (Miltenyi Biotec). RNA was prepared using the NucleoSpin RNA II kit (Macherey-Nagel).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | cRNA was synthesized using an IVT labeling kit (Affymetrix), with the cRNA product purified using a GeneChip Sample Cleanup Module (Affymetrix).
| | Sample_hyb_protocol | 20 μg biotin-labeled cRNA was fragmented and hybridized to Affymetrix GeneChip MOE430 2.0 microarrays overnight in the Affy 640 hybridization oven with a speed of 60 rpm for 16 hr. Microarrays were washed and stained using the Affymetrix Fluidics Station FS400.
| | Sample_scan_protocol | GeneChip arrays were scanned using a GeneChip Scanner 3000 (Affymetrix). The probe set intensities were quantified using the GeneChip Operating Software (GCOS). All hybridized chips met standard quality control criteria.
| | Sample_data_processing | The data were analyzed using GeneSpring GX version 11 based on GCRMA analysis default settings.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | John,Lamoine,Cleveland
| | Sample_contact_email | jcleve@scripps.edu
| | Sample_contact_phone | (561) 228-3200
| | Sample_contact_fax | (561) 228-3072
| | Sample_contact_department | Cancer Biology
| | Sample_contact_institute | The Scripps Research Institute
| | Sample_contact_address | 130 Scripps Way
| | Sample_contact_city | Jupiter
| | Sample_contact_state | FL
| | Sample_contact_zip/postal_code | 33458
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM828nnn/GSM828152/suppl/GSM828152_EA89.CEL.gz
| | Sample_series_id | GSE33474
| | Sample_series_id | GSE37792
| | Sample_data_row_count | 45101
| | |
|
GSM828153 | GPL1261 |
|
Eμ-Myc bone marrow B220+, biological replicate 2
|
Eμ-Myc bone marrow B220+
|
strain background: 94% C57BL/6
genotype/variation: precancerous Eμ-Myc transgenic
age: 4-6wks
cell type: bone marrow B220+
|
Gene expression data of bone marrow B220+ cells from 4-6 weeks old Eμ-Myc;Eµ-TTP-1 littermates.
|
| Sample_geo_accession | GSM828153
| | Sample_status | Public on Aug 02 2012
| | Sample_submission_date | Nov 04 2011
| | Sample_last_update_date | Aug 02 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | B cells were isolated from bone marrow by MACS using CD45R (B220) MicroBeads (Miltenyi Biotec). RNA was prepared using the NucleoSpin RNA II kit (Macherey-Nagel).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | cRNA was synthesized using an IVT labeling kit (Affymetrix), with the cRNA product purified using a GeneChip Sample Cleanup Module (Affymetrix).
| | Sample_hyb_protocol | 20 μg biotin-labeled cRNA was fragmented and hybridized to Affymetrix GeneChip MOE430 2.0 microarrays overnight in the Affy 640 hybridization oven with a speed of 60 rpm for 16 hr. Microarrays were washed and stained using the Affymetrix Fluidics Station FS400.
| | Sample_scan_protocol | GeneChip arrays were scanned using a GeneChip Scanner 3000 (Affymetrix). The probe set intensities were quantified using the GeneChip Operating Software (GCOS). All hybridized chips met standard quality control criteria.
| | Sample_data_processing | The data were analyzed using GeneSpring GX version 11 based on GCRMA analysis default settings.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | John,Lamoine,Cleveland
| | Sample_contact_email | jcleve@scripps.edu
| | Sample_contact_phone | (561) 228-3200
| | Sample_contact_fax | (561) 228-3072
| | Sample_contact_department | Cancer Biology
| | Sample_contact_institute | The Scripps Research Institute
| | Sample_contact_address | 130 Scripps Way
| | Sample_contact_city | Jupiter
| | Sample_contact_state | FL
| | Sample_contact_zip/postal_code | 33458
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM828nnn/GSM828153/suppl/GSM828153_EA96.CEL.gz
| | Sample_series_id | GSE33474
| | Sample_series_id | GSE37792
| | Sample_data_row_count | 45101
| | |
|
GSM828154 | GPL1261 |
|
Eμ-Myc bone marrow B220+, biological replicate 3
|
Eμ-Myc bone marrow B220+
|
strain background: 94% C57BL/6
genotype/variation: precancerous Eμ-Myc transgenic
age: 4-6wks
cell type: bone marrow B220+
|
Gene expression data of bone marrow B220+ cells from 4-6 weeks old Eμ-Myc;Eµ-TTP-1 littermates.
|
| Sample_geo_accession | GSM828154
| | Sample_status | Public on Aug 02 2012
| | Sample_submission_date | Nov 04 2011
| | Sample_last_update_date | Aug 02 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | B cells were isolated from bone marrow by MACS using CD45R (B220) MicroBeads (Miltenyi Biotec). RNA was prepared using the NucleoSpin RNA II kit (Macherey-Nagel).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | cRNA was synthesized using an IVT labeling kit (Affymetrix), with the cRNA product purified using a GeneChip Sample Cleanup Module (Affymetrix).
| | Sample_hyb_protocol | 20 μg biotin-labeled cRNA was fragmented and hybridized to Affymetrix GeneChip MOE430 2.0 microarrays overnight in the Affy 640 hybridization oven with a speed of 60 rpm for 16 hr. Microarrays were washed and stained using the Affymetrix Fluidics Station FS400.
| | Sample_scan_protocol | GeneChip arrays were scanned using a GeneChip Scanner 3000 (Affymetrix). The probe set intensities were quantified using the GeneChip Operating Software (GCOS). All hybridized chips met standard quality control criteria.
| | Sample_data_processing | The data were analyzed using GeneSpring GX version 11 based on GCRMA analysis default settings.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | John,Lamoine,Cleveland
| | Sample_contact_email | jcleve@scripps.edu
| | Sample_contact_phone | (561) 228-3200
| | Sample_contact_fax | (561) 228-3072
| | Sample_contact_department | Cancer Biology
| | Sample_contact_institute | The Scripps Research Institute
| | Sample_contact_address | 130 Scripps Way
| | Sample_contact_city | Jupiter
| | Sample_contact_state | FL
| | Sample_contact_zip/postal_code | 33458
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM828nnn/GSM828154/suppl/GSM828154_EA109.CEL.gz
| | Sample_series_id | GSE33474
| | Sample_series_id | GSE37792
| | Sample_data_row_count | 45101
| | |
|
GSM828155 | GPL1261 |
|
Eμ-Myc;Eµ-TTP-1 bone marrow B220+, biological replicate 1
|
Eμ-Myc;Eµ-TTP-1 bone marrow B220+
|
strain background: 94% C57BL/6
genotype/variation: precancerous Eμ-Myc;Eµ-TTP-1 transgenic
age: 4-6wks
cell type: bone marrow B220+
|
Gene expression data of bone marrow B220+ cells from 4-6 weeks old Eμ-Myc;Eµ-TTP-1 littermates.
|
| Sample_geo_accession | GSM828155
| | Sample_status | Public on Aug 02 2012
| | Sample_submission_date | Nov 04 2011
| | Sample_last_update_date | Aug 02 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | B cells were isolated from bone marrow by MACS using CD45R (B220) MicroBeads (Miltenyi Biotec). RNA was prepared using the NucleoSpin RNA II kit (Macherey-Nagel).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | cRNA was synthesized using an IVT labeling kit (Affymetrix), with the cRNA product purified using a GeneChip Sample Cleanup Module (Affymetrix).
| | Sample_hyb_protocol | 20 μg biotin-labeled cRNA was fragmented and hybridized to Affymetrix GeneChip MOE430 2.0 microarrays overnight in the Affy 640 hybridization oven with a speed of 60 rpm for 16 hr. Microarrays were washed and stained using the Affymetrix Fluidics Station FS400.
| | Sample_scan_protocol | GeneChip arrays were scanned using a GeneChip Scanner 3000 (Affymetrix). The probe set intensities were quantified using the GeneChip Operating Software (GCOS). All hybridized chips met standard quality control criteria.
| | Sample_data_processing | The data were analyzed using GeneSpring GX version 11 based on GCRMA analysis default settings.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | John,Lamoine,Cleveland
| | Sample_contact_email | jcleve@scripps.edu
| | Sample_contact_phone | (561) 228-3200
| | Sample_contact_fax | (561) 228-3072
| | Sample_contact_department | Cancer Biology
| | Sample_contact_institute | The Scripps Research Institute
| | Sample_contact_address | 130 Scripps Way
| | Sample_contact_city | Jupiter
| | Sample_contact_state | FL
| | Sample_contact_zip/postal_code | 33458
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM828nnn/GSM828155/suppl/GSM828155_EA84.CEL.gz
| | Sample_series_id | GSE33474
| | Sample_series_id | GSE37792
| | Sample_data_row_count | 45101
| | |
|
GSM828156 | GPL1261 |
|
Eμ-Myc;Eµ-TTP-1 bone marrow B220+, biological replicate 2
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Eμ-Myc;Eµ-TTP-1 bone marrow B220+
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strain background: 94% C57BL/6
genotype/variation: precancerous Eμ-Myc;Eµ-TTP-1 transgenic
age: 4-6wks
cell type: bone marrow B220+
|
Gene expression data of bone marrow B220+ cells from 4-6 weeks old Eμ-Myc;Eµ-TTP-1 littermates.
|
| Sample_geo_accession | GSM828156
| | Sample_status | Public on Aug 02 2012
| | Sample_submission_date | Nov 04 2011
| | Sample_last_update_date | Aug 02 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | B cells were isolated from bone marrow by MACS using CD45R (B220) MicroBeads (Miltenyi Biotec). RNA was prepared using the NucleoSpin RNA II kit (Macherey-Nagel).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | cRNA was synthesized using an IVT labeling kit (Affymetrix), with the cRNA product purified using a GeneChip Sample Cleanup Module (Affymetrix).
| | Sample_hyb_protocol | 20 μg biotin-labeled cRNA was fragmented and hybridized to Affymetrix GeneChip MOE430 2.0 microarrays overnight in the Affy 640 hybridization oven with a speed of 60 rpm for 16 hr. Microarrays were washed and stained using the Affymetrix Fluidics Station FS400.
| | Sample_scan_protocol | GeneChip arrays were scanned using a GeneChip Scanner 3000 (Affymetrix). The probe set intensities were quantified using the GeneChip Operating Software (GCOS). All hybridized chips met standard quality control criteria.
| | Sample_data_processing | The data were analyzed using GeneSpring GX version 11 based on GCRMA analysis default settings.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | John,Lamoine,Cleveland
| | Sample_contact_email | jcleve@scripps.edu
| | Sample_contact_phone | (561) 228-3200
| | Sample_contact_fax | (561) 228-3072
| | Sample_contact_department | Cancer Biology
| | Sample_contact_institute | The Scripps Research Institute
| | Sample_contact_address | 130 Scripps Way
| | Sample_contact_city | Jupiter
| | Sample_contact_state | FL
| | Sample_contact_zip/postal_code | 33458
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM828nnn/GSM828156/suppl/GSM828156_EA86.CEL.gz
| | Sample_series_id | GSE33474
| | Sample_series_id | GSE37792
| | Sample_data_row_count | 45101
| | |
|
GSM828157 | GPL1261 |
|
Eμ-Myc;Eµ-TTP-1 bone marrow B220+, biological replicate 3
|
Eμ-Myc;Eµ-TTP-1 bone marrow B220+
|
strain background: 94% C57BL/6
genotype/variation: precancerous Eμ-Myc;Eµ-TTP-1 transgenic
age: 4-6wks
cell type: bone marrow B220+
|
Gene expression data of bone marrow B220+ cells from 4-6 weeks old Eμ-Myc;Eµ-TTP-1 littermates.
|
| Sample_geo_accession | GSM828157
| | Sample_status | Public on Aug 02 2012
| | Sample_submission_date | Nov 04 2011
| | Sample_last_update_date | Aug 02 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | B cells were isolated from bone marrow by MACS using CD45R (B220) MicroBeads (Miltenyi Biotec). RNA was prepared using the NucleoSpin RNA II kit (Macherey-Nagel).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | cRNA was synthesized using an IVT labeling kit (Affymetrix), with the cRNA product purified using a GeneChip Sample Cleanup Module (Affymetrix).
| | Sample_hyb_protocol | 20 μg biotin-labeled cRNA was fragmented and hybridized to Affymetrix GeneChip MOE430 2.0 microarrays overnight in the Affy 640 hybridization oven with a speed of 60 rpm for 16 hr. Microarrays were washed and stained using the Affymetrix Fluidics Station FS400.
| | Sample_scan_protocol | GeneChip arrays were scanned using a GeneChip Scanner 3000 (Affymetrix). The probe set intensities were quantified using the GeneChip Operating Software (GCOS). All hybridized chips met standard quality control criteria.
| | Sample_data_processing | The data were analyzed using GeneSpring GX version 11 based on GCRMA analysis default settings.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | John,Lamoine,Cleveland
| | Sample_contact_email | jcleve@scripps.edu
| | Sample_contact_phone | (561) 228-3200
| | Sample_contact_fax | (561) 228-3072
| | Sample_contact_department | Cancer Biology
| | Sample_contact_institute | The Scripps Research Institute
| | Sample_contact_address | 130 Scripps Way
| | Sample_contact_city | Jupiter
| | Sample_contact_state | FL
| | Sample_contact_zip/postal_code | 33458
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM828nnn/GSM828157/suppl/GSM828157_EA98.CEL.gz
| | Sample_series_id | GSE33474
| | Sample_series_id | GSE37792
| | Sample_data_row_count | 45101
| | |
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