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Search results for the GEO ID: GSE33766

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(Once the selection is made, click on "Add groups" in "Make groups for comparison", to make a group. Scroll down)

GSM ID

GPL ID

Select for analysis

Title

Source name

Description

Characteristics

GSM835207

GPL339

Whisker pad WT biological rep1

E12.5 Whisker pad wild-type

tissue: whole whisker pad genotype: wild-type age: E12.5

Gene expression data during vibrissae placode formation

Sample_geo_accession	GSM835207
Sample_status	Public on Dec 22 2011
Sample_submission_date	Nov 17 2011
Sample_last_update_date	Dec 22 2011
Sample_type	RNA
Sample_channel_count	1
Sample_organism_ch1	Mus musculus
Sample_taxid_ch1	10090
Sample_molecule_ch1	total RNA
Sample_extract_protocol_ch1	Whole whisker pads were dissected from E12.5 embryos.
Sample_extract_protocol_ch1	Total RNA was isolated using the RNeasy® Mini Kit (Qiagen).
Sample_label_ch1	biotin
Sample_label_protocol_ch1	Biotinylated cRNA were prepared according to the standard Affymetrix protocol.
Sample_hyb_protocol	15 ug of cRNA were hybridized to Affymetrix GeneChip® MOE430A microarrays.
Sample_scan_protocol	Affymetrix protocol
Sample_data_processing	The data output was analyzed using GeneSpring GX 10.0 commercial software (Agilent Technologies Inc., Palo Alto, CA, USA). p-values were calculated using an unpaired t-test. Expression values with a p-value ≤0.05 and a fold difference of ≥1.5-fold relative to wild-type baseline expression levels were considered significant.
Sample_data_processing = Affymetrix Gene Expression, MOE 430A chips Filter by expression Raw data Filter by percentile Upper cutoff = 100.0 Lower cutoff = 20.0 At least 1 out of 6 samples have values within range T-test unpaired p-value computation: Asymptotic Multiple testing correction: No correction p-value cutoff = 0.05 Fold change cutoff	1.5 Clustering: Hierarchical Interpretation: A. All Samples B. Genotype Cluster on: Entities and Conditions
Sample_platform_id	GPL339
Sample_contact_name	Katherine,,Fantauzzo
Sample_contact_email	kaf2103@columbia.edu
Sample_contact_institute	Columbia University
Sample_contact_address	1150 St. Nicholas Avenue Room 307
Sample_contact_city	New York
Sample_contact_state	NY
Sample_contact_zip/postal_code	10032
Sample_contact_country	USA
Sample_supplementary_file	ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM835nnn/GSM835207/suppl/GSM835207_WT-1.CEL.gz
Sample_series_id	GSE33766
Sample_data_row_count	22690

GSM835208

GPL339

Whisker pad WT biological rep2

E12.5 Whisker pad wild-type

tissue: whole whisker pad genotype: wild-type age: E12.5

Gene expression data during vibrissae placode formation

Sample_geo_accession	GSM835208
Sample_status	Public on Dec 22 2011
Sample_submission_date	Nov 17 2011
Sample_last_update_date	Dec 22 2011
Sample_type	RNA
Sample_channel_count	1
Sample_organism_ch1	Mus musculus
Sample_taxid_ch1	10090
Sample_molecule_ch1	total RNA
Sample_extract_protocol_ch1	Whole whisker pads were dissected from E12.5 embryos.
Sample_extract_protocol_ch1	Total RNA was isolated using the RNeasy® Mini Kit (Qiagen).
Sample_label_ch1	biotin
Sample_label_protocol_ch1	Biotinylated cRNA were prepared according to the standard Affymetrix protocol.
Sample_hyb_protocol	15 ug of cRNA were hybridized to Affymetrix GeneChip® MOE430A microarrays.
Sample_scan_protocol	Affymetrix protocol
Sample_data_processing	The data output was analyzed using GeneSpring GX 10.0 commercial software (Agilent Technologies Inc., Palo Alto, CA, USA). p-values were calculated using an unpaired t-test. Expression values with a p-value ≤0.05 and a fold difference of ≥1.5-fold relative to wild-type baseline expression levels were considered significant.
Sample_data_processing = Affymetrix Gene Expression, MOE 430A chips Filter by expression Raw data Filter by percentile Upper cutoff = 100.0 Lower cutoff = 20.0 At least 1 out of 6 samples have values within range T-test unpaired p-value computation: Asymptotic Multiple testing correction: No correction p-value cutoff = 0.05 Fold change cutoff	1.5 Clustering: Hierarchical Interpretation: A. All Samples B. Genotype Cluster on: Entities and Conditions
Sample_platform_id	GPL339
Sample_contact_name	Katherine,,Fantauzzo
Sample_contact_email	kaf2103@columbia.edu
Sample_contact_institute	Columbia University
Sample_contact_address	1150 St. Nicholas Avenue Room 307
Sample_contact_city	New York
Sample_contact_state	NY
Sample_contact_zip/postal_code	10032
Sample_contact_country	USA
Sample_supplementary_file	ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM835nnn/GSM835208/suppl/GSM835208_WT-2.CEL.gz
Sample_series_id	GSE33766
Sample_data_row_count	22690

GSM835209

GPL339

Whisker pad WT biological rep3

E12.5 Whisker pad wild-type

tissue: whole whisker pad genotype: wild-type age: E12.5

Gene expression data during vibrissae placode formation

Sample_geo_accession	GSM835209
Sample_status	Public on Dec 22 2011
Sample_submission_date	Nov 17 2011
Sample_last_update_date	Dec 22 2011
Sample_type	RNA
Sample_channel_count	1
Sample_organism_ch1	Mus musculus
Sample_taxid_ch1	10090
Sample_molecule_ch1	total RNA
Sample_extract_protocol_ch1	Whole whisker pads were dissected from E12.5 embryos.
Sample_extract_protocol_ch1	Total RNA was isolated using the RNeasy® Mini Kit (Qiagen).
Sample_label_ch1	biotin
Sample_label_protocol_ch1	Biotinylated cRNA were prepared according to the standard Affymetrix protocol.
Sample_hyb_protocol	15 ug of cRNA were hybridized to Affymetrix GeneChip® MOE430A microarrays.
Sample_scan_protocol	Affymetrix protocol
Sample_data_processing	The data output was analyzed using GeneSpring GX 10.0 commercial software (Agilent Technologies Inc., Palo Alto, CA, USA). p-values were calculated using an unpaired t-test. Expression values with a p-value ≤0.05 and a fold difference of ≥1.5-fold relative to wild-type baseline expression levels were considered significant.
Sample_data_processing = Affymetrix Gene Expression, MOE 430A chips Filter by expression Raw data Filter by percentile Upper cutoff = 100.0 Lower cutoff = 20.0 At least 1 out of 6 samples have values within range T-test unpaired p-value computation: Asymptotic Multiple testing correction: No correction p-value cutoff = 0.05 Fold change cutoff	1.5 Clustering: Hierarchical Interpretation: A. All Samples B. Genotype Cluster on: Entities and Conditions
Sample_platform_id	GPL339
Sample_contact_name	Katherine,,Fantauzzo
Sample_contact_email	kaf2103@columbia.edu
Sample_contact_institute	Columbia University
Sample_contact_address	1150 St. Nicholas Avenue Room 307
Sample_contact_city	New York
Sample_contact_state	NY
Sample_contact_zip/postal_code	10032
Sample_contact_country	USA
Sample_supplementary_file	ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM835nnn/GSM835209/suppl/GSM835209_WT-3.CEL.gz
Sample_series_id	GSE33766
Sample_data_row_count	22690

GSM835210

GPL339

Whisker pad mutant biological rep1

E12.5 Whisker pad Trps1 mutant

tissue: whole whisker pad genotype: homozygous Trps1 mutant age: E12.5

Gene expression data during vibrissae placode formation

Sample_geo_accession	GSM835210
Sample_status	Public on Dec 22 2011
Sample_submission_date	Nov 17 2011
Sample_last_update_date	Dec 22 2011
Sample_type	RNA
Sample_channel_count	1
Sample_organism_ch1	Mus musculus
Sample_taxid_ch1	10090
Sample_molecule_ch1	total RNA
Sample_extract_protocol_ch1	Whole whisker pads were dissected from E12.5 embryos.
Sample_extract_protocol_ch1	Total RNA was isolated using the RNeasy® Mini Kit (Qiagen).
Sample_label_ch1	biotin
Sample_label_protocol_ch1	Biotinylated cRNA were prepared according to the standard Affymetrix protocol.
Sample_hyb_protocol	15 ug of cRNA were hybridized to Affymetrix GeneChip® MOE430A microarrays.
Sample_scan_protocol	Affymetrix protocol
Sample_data_processing	The data output was analyzed using GeneSpring GX 10.0 commercial software (Agilent Technologies Inc., Palo Alto, CA, USA). p-values were calculated using an unpaired t-test. Expression values with a p-value ≤0.05 and a fold difference of ≥1.5-fold relative to wild-type baseline expression levels were considered significant.
Sample_data_processing = Affymetrix Gene Expression, MOE 430A chips Filter by expression Raw data Filter by percentile Upper cutoff = 100.0 Lower cutoff = 20.0 At least 1 out of 6 samples have values within range T-test unpaired p-value computation: Asymptotic Multiple testing correction: No correction p-value cutoff = 0.05 Fold change cutoff	1.5 Clustering: Hierarchical Interpretation: A. All Samples B. Genotype Cluster on: Entities and Conditions
Sample_platform_id	GPL339
Sample_contact_name	Katherine,,Fantauzzo
Sample_contact_email	kaf2103@columbia.edu
Sample_contact_institute	Columbia University
Sample_contact_address	1150 St. Nicholas Avenue Room 307
Sample_contact_city	New York
Sample_contact_state	NY
Sample_contact_zip/postal_code	10032
Sample_contact_country	USA
Sample_supplementary_file	ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM835nnn/GSM835210/suppl/GSM835210_Mut-1.CEL.gz
Sample_series_id	GSE33766
Sample_data_row_count	22690

GSM835211

GPL339

Whisker pad mutant biological rep2

E12.5 Whisker pad Trps1 mutant

tissue: whole whisker pad genotype: homozygous Trps1 mutant age: E12.5

Gene expression data during vibrissae placode formation

Sample_geo_accession	GSM835211
Sample_status	Public on Dec 22 2011
Sample_submission_date	Nov 17 2011
Sample_last_update_date	Dec 22 2011
Sample_type	RNA
Sample_channel_count	1
Sample_organism_ch1	Mus musculus
Sample_taxid_ch1	10090
Sample_molecule_ch1	total RNA
Sample_extract_protocol_ch1	Whole whisker pads were dissected from E12.5 embryos.
Sample_extract_protocol_ch1	Total RNA was isolated using the RNeasy® Mini Kit (Qiagen).
Sample_label_ch1	biotin
Sample_label_protocol_ch1	Biotinylated cRNA were prepared according to the standard Affymetrix protocol.
Sample_hyb_protocol	15 ug of cRNA were hybridized to Affymetrix GeneChip® MOE430A microarrays.
Sample_scan_protocol	Affymetrix protocol
Sample_data_processing	The data output was analyzed using GeneSpring GX 10.0 commercial software (Agilent Technologies Inc., Palo Alto, CA, USA). p-values were calculated using an unpaired t-test. Expression values with a p-value ≤0.05 and a fold difference of ≥1.5-fold relative to wild-type baseline expression levels were considered significant.
Sample_data_processing = Affymetrix Gene Expression, MOE 430A chips Filter by expression Raw data Filter by percentile Upper cutoff = 100.0 Lower cutoff = 20.0 At least 1 out of 6 samples have values within range T-test unpaired p-value computation: Asymptotic Multiple testing correction: No correction p-value cutoff = 0.05 Fold change cutoff	1.5 Clustering: Hierarchical Interpretation: A. All Samples B. Genotype Cluster on: Entities and Conditions
Sample_platform_id	GPL339
Sample_contact_name	Katherine,,Fantauzzo
Sample_contact_email	kaf2103@columbia.edu
Sample_contact_institute	Columbia University
Sample_contact_address	1150 St. Nicholas Avenue Room 307
Sample_contact_city	New York
Sample_contact_state	NY
Sample_contact_zip/postal_code	10032
Sample_contact_country	USA
Sample_supplementary_file	ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM835nnn/GSM835211/suppl/GSM835211_Mut-2.CEL.gz
Sample_series_id	GSE33766
Sample_data_row_count	22690

GSM835212

GPL339

Whisker pad mutant biological rep3

E12.5 Whisker pad Trps1 mutant

tissue: whole whisker pad genotype: homozygous Trps1 mutant age: E12.5

Gene expression data during vibrissae placode formation

Sample_geo_accession	GSM835212
Sample_status	Public on Dec 22 2011
Sample_submission_date	Nov 17 2011
Sample_last_update_date	Dec 22 2011
Sample_type	RNA
Sample_channel_count	1
Sample_organism_ch1	Mus musculus
Sample_taxid_ch1	10090
Sample_molecule_ch1	total RNA
Sample_extract_protocol_ch1	Whole whisker pads were dissected from E12.5 embryos.
Sample_extract_protocol_ch1	Total RNA was isolated using the RNeasy® Mini Kit (Qiagen).
Sample_label_ch1	biotin
Sample_label_protocol_ch1	Biotinylated cRNA were prepared according to the standard Affymetrix protocol.
Sample_hyb_protocol	15 ug of cRNA were hybridized to Affymetrix GeneChip® MOE430A microarrays.
Sample_scan_protocol	Affymetrix protocol
Sample_data_processing	The data output was analyzed using GeneSpring GX 10.0 commercial software (Agilent Technologies Inc., Palo Alto, CA, USA). p-values were calculated using an unpaired t-test. Expression values with a p-value ≤0.05 and a fold difference of ≥1.5-fold relative to wild-type baseline expression levels were considered significant.
Sample_data_processing = Affymetrix Gene Expression, MOE 430A chips Filter by expression Raw data Filter by percentile Upper cutoff = 100.0 Lower cutoff = 20.0 At least 1 out of 6 samples have values within range T-test unpaired p-value computation: Asymptotic Multiple testing correction: No correction p-value cutoff = 0.05 Fold change cutoff	1.5 Clustering: Hierarchical Interpretation: A. All Samples B. Genotype Cluster on: Entities and Conditions
Sample_platform_id	GPL339
Sample_contact_name	Katherine,,Fantauzzo
Sample_contact_email	kaf2103@columbia.edu
Sample_contact_institute	Columbia University
Sample_contact_address	1150 St. Nicholas Avenue Room 307
Sample_contact_city	New York
Sample_contact_state	NY
Sample_contact_zip/postal_code	10032
Sample_contact_country	USA
Sample_supplementary_file	ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM835nnn/GSM835212/suppl/GSM835212_Mut-3.CEL.gz
Sample_series_id	GSE33766
Sample_data_row_count	22690

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