Search results for the GEO ID: GSE33810  |
(Click on the check boxes provided under "Select for analysis", to initiate grouping) |
(Once the selection is made, click on "Add groups" in "Make groups for comparison", to make a group. Scroll down) |
|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM836193 | GPL570 |
|
Non-tumor tissue of esophagus
|
non-tumor tissue RNA from ESCC patient
|
tissue: esophageal tissue
|
Gene expression data from non-tumor tissues of patients with ESCC
|
| Sample_geo_accession | GSM836193
| | Sample_status | Public on Nov 19 2011
| | Sample_submission_date | Nov 18 2011
| | Sample_last_update_date | Aug 20 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized on Affymetrix Human Genome U133 Plus 2.0 GeneChip. GeneChips were washed and stained.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Grace,,Fu
| | Sample_contact_email | gracelfu@hku.hk
| | Sample_contact_laboratory | Cancer Genetics
| | Sample_contact_department | Clinical Oncology
| | Sample_contact_institute | The University of Hong Kong
| | Sample_contact_address | 21 Sassoon Road
| | Sample_contact_city | Hong Kong
| | Sample_contact_zip/postal_code | 852
| | Sample_contact_country | Hong Kong
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM836nnn/GSM836193/suppl/GSM836193.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM836nnn/GSM836193/suppl/GSM836193.CHP.gz
| | Sample_series_id | GSE33810
| | Sample_data_row_count | 54675
| | |
|
GSM836194 | GPL570 |
|
Tumor tissue of esophagus
|
tumor tissue RNA from ESCC patient
|
tissue: esophageal tissue
|
Gene expression data from tumor tissues of patients with ESCC
|
| Sample_geo_accession | GSM836194
| | Sample_status | Public on Nov 19 2011
| | Sample_submission_date | Nov 18 2011
| | Sample_last_update_date | Aug 20 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized on Affymetrix Human Genome U133 Plus 2.0 GeneChip. GeneChips were washed and stained.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Grace,,Fu
| | Sample_contact_email | gracelfu@hku.hk
| | Sample_contact_laboratory | Cancer Genetics
| | Sample_contact_department | Clinical Oncology
| | Sample_contact_institute | The University of Hong Kong
| | Sample_contact_address | 21 Sassoon Road
| | Sample_contact_city | Hong Kong
| | Sample_contact_zip/postal_code | 852
| | Sample_contact_country | Hong Kong
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM836nnn/GSM836194/suppl/GSM836194.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM836nnn/GSM836194/suppl/GSM836194.CHP.gz
| | Sample_series_id | GSE33810
| | Sample_data_row_count | 54675
| | |
|
GSM988480 | GPL570 |
|
Tumor tissue of esophagus with family history
|
tumor tissue RNA from ESCC patient with family history
|
tissue: esophageal tissue
|
EC-FH_2
Gene expression data from tumor tissues of ESCC patients with family history
|
| Sample_geo_accession | GSM988480
| | Sample_status | Public on Aug 21 2012
| | Sample_submission_date | Aug 20 2012
| | Sample_last_update_date | Aug 21 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized on Affymetrix Human Genome U133 Plus 2.0 GeneChip. GeneChips were washed and stained.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Grace,,Fu
| | Sample_contact_email | gracelfu@hku.hk
| | Sample_contact_laboratory | Cancer Genetics
| | Sample_contact_department | Clinical Oncology
| | Sample_contact_institute | The University of Hong Kong
| | Sample_contact_address | 21 Sassoon Road
| | Sample_contact_city | Hong Kong
| | Sample_contact_zip/postal_code | 852
| | Sample_contact_country | Hong Kong
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM988nnn/GSM988480/suppl/GSM988480_EC-FH_2_Guan_U133_Plus_2_071011.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM988nnn/GSM988480/suppl/GSM988480_EC-FH_2_Guan_U133_Plus_2_071011.CHP.gz
| | Sample_series_id | GSE33810
| | Sample_data_row_count | 54675
| | |
|
| |
| |
Make groups for comparisons |
(2 groups will be compared at a time) |
|
| Select GSMs and click on "Add groups" |
Enter the group name here: |
|
|
|
Select expression type |
| Transcripts profile based on; |
A. Differential status (Up/Down regulation) |
|
|
Regulation type |
|
Fold change |
|
p-value |
|
|
|
B. Absolute calls (Transcribed/Not-detected) |
|
|
| Derive calls within/across groups |
Within groups |
|
|
Detection status |
|
Percentage detection |
|
|
Across groups |
|
|
Detection status |
First group: |
- |
Second group:
|
Percentage detection |
First group: |
- |
Second group:
|
|
|
| |
Filter results by number of probes |
|
|
