Search results for the GEO ID: GSE34025  |
(Click on the check boxes provided under "Select for analysis", to initiate grouping) |
(Once the selection is made, click on "Add groups" in "Make groups for comparison", to make a group. Scroll down) |
|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM840578 | GPL570 |
|
SA.0
|
Monocytes exposed to saline
|
cell type: cultured monocytes
|
|
| Sample_geo_accession | GSM840578
| | Sample_status | Public on Mar 01 2012
| | Sample_submission_date | Nov 29 2011
| | Sample_last_update_date | Mar 01 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | DEP or saline was added to culture media as described.
| | Sample_growth_protocol_ch1 | Human monocytes were extracted from whole blood using ficoll and attached to plastic culture plates.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | 3' IVT express kit
| | Sample_hyb_protocol | 3' IVT express kit
| | Sample_scan_protocol | 3' IVT express kit
| | Sample_data_processing | Analysis done using R 2.9, bioconductor using affy, gcrma, and dependent packages.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Sean,,McGhee
| | Sample_contact_email | smcghee@stanford.edu
| | Sample_contact_phone | 6504986073
| | Sample_contact_fax | 6504986077
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | Stanford University
| | Sample_contact_address | 269 Campus Drive, CCSR Rm 2115
| | Sample_contact_city | Stanford
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 94304
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM840nnn/GSM840578/suppl/GSM840578_SA.0.CEL.gz
| | Sample_series_id | GSE34025
| | Sample_data_row_count | 54675
| | |
|
GSM840579 | GPL570 |
|
SA.DEP
|
Monocytes exposed to DEP
|
cell type: cultured monocytes
|
|
| Sample_geo_accession | GSM840579
| | Sample_status | Public on Mar 01 2012
| | Sample_submission_date | Nov 29 2011
| | Sample_last_update_date | Mar 01 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | DEP or saline was added to culture media as described.
| | Sample_growth_protocol_ch1 | Human monocytes were extracted from whole blood using ficoll and attached to plastic culture plates.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | 3' IVT express kit
| | Sample_hyb_protocol | 3' IVT express kit
| | Sample_scan_protocol | 3' IVT express kit
| | Sample_data_processing | Analysis done using R 2.9, bioconductor using affy, gcrma, and dependent packages.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Sean,,McGhee
| | Sample_contact_email | smcghee@stanford.edu
| | Sample_contact_phone | 6504986073
| | Sample_contact_fax | 6504986077
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | Stanford University
| | Sample_contact_address | 269 Campus Drive, CCSR Rm 2115
| | Sample_contact_city | Stanford
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 94304
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM840nnn/GSM840579/suppl/GSM840579_SA.DEP.CEL.gz
| | Sample_series_id | GSE34025
| | Sample_data_row_count | 54675
| | |
|
GSM840580 | GPL570 |
|
SB.0
|
Monocytes exposed to saline
|
cell type: cultured monocytes
|
|
| Sample_geo_accession | GSM840580
| | Sample_status | Public on Mar 01 2012
| | Sample_submission_date | Nov 29 2011
| | Sample_last_update_date | Mar 01 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | DEP or saline was added to culture media as described.
| | Sample_growth_protocol_ch1 | Human monocytes were extracted from whole blood using ficoll and attached to plastic culture plates.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | 3' IVT express kit
| | Sample_hyb_protocol | 3' IVT express kit
| | Sample_scan_protocol | 3' IVT express kit
| | Sample_data_processing | Analysis done using R 2.9, bioconductor using affy, gcrma, and dependent packages.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Sean,,McGhee
| | Sample_contact_email | smcghee@stanford.edu
| | Sample_contact_phone | 6504986073
| | Sample_contact_fax | 6504986077
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | Stanford University
| | Sample_contact_address | 269 Campus Drive, CCSR Rm 2115
| | Sample_contact_city | Stanford
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 94304
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM840nnn/GSM840580/suppl/GSM840580_SB.0.CEL.gz
| | Sample_series_id | GSE34025
| | Sample_data_row_count | 54675
| | |
|
GSM840581 | GPL570 |
|
SB.DEP
|
Monocytes exposed to DEP
|
cell type: cultured monocytes
|
|
| Sample_geo_accession | GSM840581
| | Sample_status | Public on Mar 01 2012
| | Sample_submission_date | Nov 29 2011
| | Sample_last_update_date | Mar 01 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | DEP or saline was added to culture media as described.
| | Sample_growth_protocol_ch1 | Human monocytes were extracted from whole blood using ficoll and attached to plastic culture plates.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | 3' IVT express kit
| | Sample_hyb_protocol | 3' IVT express kit
| | Sample_scan_protocol | 3' IVT express kit
| | Sample_data_processing | Analysis done using R 2.9, bioconductor using affy, gcrma, and dependent packages.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Sean,,McGhee
| | Sample_contact_email | smcghee@stanford.edu
| | Sample_contact_phone | 6504986073
| | Sample_contact_fax | 6504986077
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | Stanford University
| | Sample_contact_address | 269 Campus Drive, CCSR Rm 2115
| | Sample_contact_city | Stanford
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 94304
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM840nnn/GSM840581/suppl/GSM840581_SB.DEP.CEL.gz
| | Sample_series_id | GSE34025
| | Sample_data_row_count | 54675
| | |
|
GSM840582 | GPL570 |
|
S17.0
|
Monocytes exposed to saline
|
cell type: cultured monocytes
|
|
| Sample_geo_accession | GSM840582
| | Sample_status | Public on Mar 01 2012
| | Sample_submission_date | Nov 29 2011
| | Sample_last_update_date | Mar 01 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | DEP or saline was added to culture media as described.
| | Sample_growth_protocol_ch1 | Human monocytes were extracted from whole blood using ficoll and attached to plastic culture plates.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | 3' IVT express kit
| | Sample_hyb_protocol | 3' IVT express kit
| | Sample_scan_protocol | 3' IVT express kit
| | Sample_data_processing | Analysis done using R 2.9, bioconductor using affy, gcrma, and dependent packages.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Sean,,McGhee
| | Sample_contact_email | smcghee@stanford.edu
| | Sample_contact_phone | 6504986073
| | Sample_contact_fax | 6504986077
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | Stanford University
| | Sample_contact_address | 269 Campus Drive, CCSR Rm 2115
| | Sample_contact_city | Stanford
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 94304
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM840nnn/GSM840582/suppl/GSM840582_S17.0.CEL.gz
| | Sample_series_id | GSE34025
| | Sample_data_row_count | 54675
| | |
|
GSM840583 | GPL570 |
|
S17.DEP
|
Monocytes exposed to DEP
|
cell type: cultured monocytes
|
|
| Sample_geo_accession | GSM840583
| | Sample_status | Public on Mar 01 2012
| | Sample_submission_date | Nov 29 2011
| | Sample_last_update_date | Mar 01 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | DEP or saline was added to culture media as described.
| | Sample_growth_protocol_ch1 | Human monocytes were extracted from whole blood using ficoll and attached to plastic culture plates.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | 3' IVT express kit
| | Sample_hyb_protocol | 3' IVT express kit
| | Sample_scan_protocol | 3' IVT express kit
| | Sample_data_processing | Analysis done using R 2.9, bioconductor using affy, gcrma, and dependent packages.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Sean,,McGhee
| | Sample_contact_email | smcghee@stanford.edu
| | Sample_contact_phone | 6504986073
| | Sample_contact_fax | 6504986077
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | Stanford University
| | Sample_contact_address | 269 Campus Drive, CCSR Rm 2115
| | Sample_contact_city | Stanford
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 94304
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM840nnn/GSM840583/suppl/GSM840583_S17.DEP.CEL.gz
| | Sample_series_id | GSE34025
| | Sample_data_row_count | 54675
| | |
|
GSM840584 | GPL570 |
|
S18.0
|
Monocytes exposed to saline
|
cell type: cultured monocytes
|
|
| Sample_geo_accession | GSM840584
| | Sample_status | Public on Mar 01 2012
| | Sample_submission_date | Nov 29 2011
| | Sample_last_update_date | Mar 01 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | DEP or saline was added to culture media as described.
| | Sample_growth_protocol_ch1 | Human monocytes were extracted from whole blood using ficoll and attached to plastic culture plates.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | 3' IVT express kit
| | Sample_hyb_protocol | 3' IVT express kit
| | Sample_scan_protocol | 3' IVT express kit
| | Sample_data_processing | Analysis done using R 2.9, bioconductor using affy, gcrma, and dependent packages.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Sean,,McGhee
| | Sample_contact_email | smcghee@stanford.edu
| | Sample_contact_phone | 6504986073
| | Sample_contact_fax | 6504986077
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | Stanford University
| | Sample_contact_address | 269 Campus Drive, CCSR Rm 2115
| | Sample_contact_city | Stanford
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 94304
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM840nnn/GSM840584/suppl/GSM840584_S18.0.CEL.gz
| | Sample_series_id | GSE34025
| | Sample_data_row_count | 54675
| | |
|
GSM840585 | GPL570 |
|
S18.DEP
|
Monocytes exposed to DEP
|
cell type: cultured monocytes
|
|
| Sample_geo_accession | GSM840585
| | Sample_status | Public on Mar 01 2012
| | Sample_submission_date | Nov 29 2011
| | Sample_last_update_date | Mar 01 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | DEP or saline was added to culture media as described.
| | Sample_growth_protocol_ch1 | Human monocytes were extracted from whole blood using ficoll and attached to plastic culture plates.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | 3' IVT express kit
| | Sample_hyb_protocol | 3' IVT express kit
| | Sample_scan_protocol | 3' IVT express kit
| | Sample_data_processing | Analysis done using R 2.9, bioconductor using affy, gcrma, and dependent packages.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Sean,,McGhee
| | Sample_contact_email | smcghee@stanford.edu
| | Sample_contact_phone | 6504986073
| | Sample_contact_fax | 6504986077
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | Stanford University
| | Sample_contact_address | 269 Campus Drive, CCSR Rm 2115
| | Sample_contact_city | Stanford
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 94304
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM840nnn/GSM840585/suppl/GSM840585_S18.DEP.CEL.gz
| | Sample_series_id | GSE34025
| | Sample_data_row_count | 54675
| | |
|
GSM840586 | GPL570 |
|
S19.0
|
Monocytes exposed to saline
|
cell type: cultured monocytes
|
|
| Sample_geo_accession | GSM840586
| | Sample_status | Public on Mar 01 2012
| | Sample_submission_date | Nov 29 2011
| | Sample_last_update_date | Mar 01 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | DEP or saline was added to culture media as described.
| | Sample_growth_protocol_ch1 | Human monocytes were extracted from whole blood using ficoll and attached to plastic culture plates.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | 3' IVT express kit
| | Sample_hyb_protocol | 3' IVT express kit
| | Sample_scan_protocol | 3' IVT express kit
| | Sample_data_processing | Analysis done using R 2.9, bioconductor using affy, gcrma, and dependent packages.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Sean,,McGhee
| | Sample_contact_email | smcghee@stanford.edu
| | Sample_contact_phone | 6504986073
| | Sample_contact_fax | 6504986077
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | Stanford University
| | Sample_contact_address | 269 Campus Drive, CCSR Rm 2115
| | Sample_contact_city | Stanford
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 94304
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM840nnn/GSM840586/suppl/GSM840586_S19.0.CEL.gz
| | Sample_series_id | GSE34025
| | Sample_data_row_count | 54675
| | |
|
GSM840587 | GPL570 |
|
S19.DEP
|
Monocytes exposed to DEP
|
cell type: cultured monocytes
|
|
| Sample_geo_accession | GSM840587
| | Sample_status | Public on Mar 01 2012
| | Sample_submission_date | Nov 29 2011
| | Sample_last_update_date | Mar 01 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | DEP or saline was added to culture media as described.
| | Sample_growth_protocol_ch1 | Human monocytes were extracted from whole blood using ficoll and attached to plastic culture plates.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | 3' IVT express kit
| | Sample_hyb_protocol | 3' IVT express kit
| | Sample_scan_protocol | 3' IVT express kit
| | Sample_data_processing | Analysis done using R 2.9, bioconductor using affy, gcrma, and dependent packages.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Sean,,McGhee
| | Sample_contact_email | smcghee@stanford.edu
| | Sample_contact_phone | 6504986073
| | Sample_contact_fax | 6504986077
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | Stanford University
| | Sample_contact_address | 269 Campus Drive, CCSR Rm 2115
| | Sample_contact_city | Stanford
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 94304
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM840nnn/GSM840587/suppl/GSM840587_S19.DEP.CEL.gz
| | Sample_series_id | GSE34025
| | Sample_data_row_count | 54675
| | |
|
GSM840588 | GPL570 |
|
S20.0
|
Monocytes exposed to saline
|
cell type: cultured monocytes
|
|
| Sample_geo_accession | GSM840588
| | Sample_status | Public on Mar 01 2012
| | Sample_submission_date | Nov 29 2011
| | Sample_last_update_date | Mar 01 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | DEP or saline was added to culture media as described.
| | Sample_growth_protocol_ch1 | Human monocytes were extracted from whole blood using ficoll and attached to plastic culture plates.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | 3' IVT express kit
| | Sample_hyb_protocol | 3' IVT express kit
| | Sample_scan_protocol | 3' IVT express kit
| | Sample_data_processing | Analysis done using R 2.9, bioconductor using affy, gcrma, and dependent packages.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Sean,,McGhee
| | Sample_contact_email | smcghee@stanford.edu
| | Sample_contact_phone | 6504986073
| | Sample_contact_fax | 6504986077
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | Stanford University
| | Sample_contact_address | 269 Campus Drive, CCSR Rm 2115
| | Sample_contact_city | Stanford
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 94304
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM840nnn/GSM840588/suppl/GSM840588_S20.0.CEL.gz
| | Sample_series_id | GSE34025
| | Sample_data_row_count | 54675
| | |
|
GSM840589 | GPL570 |
|
S20.DEP
|
Monocytes exposed to DEP
|
cell type: cultured monocytes
|
|
| Sample_geo_accession | GSM840589
| | Sample_status | Public on Mar 01 2012
| | Sample_submission_date | Nov 29 2011
| | Sample_last_update_date | Mar 01 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | DEP or saline was added to culture media as described.
| | Sample_growth_protocol_ch1 | Human monocytes were extracted from whole blood using ficoll and attached to plastic culture plates.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | 3' IVT express kit
| | Sample_hyb_protocol | 3' IVT express kit
| | Sample_scan_protocol | 3' IVT express kit
| | Sample_data_processing | Analysis done using R 2.9, bioconductor using affy, gcrma, and dependent packages.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Sean,,McGhee
| | Sample_contact_email | smcghee@stanford.edu
| | Sample_contact_phone | 6504986073
| | Sample_contact_fax | 6504986077
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | Stanford University
| | Sample_contact_address | 269 Campus Drive, CCSR Rm 2115
| | Sample_contact_city | Stanford
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 94304
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM840nnn/GSM840589/suppl/GSM840589_S20.DEP.CEL.gz
| | Sample_series_id | GSE34025
| | Sample_data_row_count | 54675
| | |
|
GSM840590 | GPL570 |
|
S22.0
|
Monocytes exposed to saline
|
cell type: cultured monocytes
|
|
| Sample_geo_accession | GSM840590
| | Sample_status | Public on Mar 01 2012
| | Sample_submission_date | Nov 29 2011
| | Sample_last_update_date | Mar 01 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | DEP or saline was added to culture media as described.
| | Sample_growth_protocol_ch1 | Human monocytes were extracted from whole blood using ficoll and attached to plastic culture plates.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | 3' IVT express kit
| | Sample_hyb_protocol | 3' IVT express kit
| | Sample_scan_protocol | 3' IVT express kit
| | Sample_data_processing | Analysis done using R 2.9, bioconductor using affy, gcrma, and dependent packages.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Sean,,McGhee
| | Sample_contact_email | smcghee@stanford.edu
| | Sample_contact_phone | 6504986073
| | Sample_contact_fax | 6504986077
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | Stanford University
| | Sample_contact_address | 269 Campus Drive, CCSR Rm 2115
| | Sample_contact_city | Stanford
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 94304
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM840nnn/GSM840590/suppl/GSM840590_S22.0.CEL.gz
| | Sample_series_id | GSE34025
| | Sample_data_row_count | 54675
| | |
|
GSM840591 | GPL570 |
|
S22.DEP
|
Monocytes exposed to DEP
|
cell type: cultured monocytes
|
|
| Sample_geo_accession | GSM840591
| | Sample_status | Public on Mar 01 2012
| | Sample_submission_date | Nov 29 2011
| | Sample_last_update_date | Mar 01 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | DEP or saline was added to culture media as described.
| | Sample_growth_protocol_ch1 | Human monocytes were extracted from whole blood using ficoll and attached to plastic culture plates.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | 3' IVT express kit
| | Sample_hyb_protocol | 3' IVT express kit
| | Sample_scan_protocol | 3' IVT express kit
| | Sample_data_processing | Analysis done using R 2.9, bioconductor using affy, gcrma, and dependent packages.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Sean,,McGhee
| | Sample_contact_email | smcghee@stanford.edu
| | Sample_contact_phone | 6504986073
| | Sample_contact_fax | 6504986077
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | Stanford University
| | Sample_contact_address | 269 Campus Drive, CCSR Rm 2115
| | Sample_contact_city | Stanford
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 94304
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM840nnn/GSM840591/suppl/GSM840591_S22.DEP.CEL.gz
| | Sample_series_id | GSE34025
| | Sample_data_row_count | 54675
| | |
|
GSM840592 | GPL570 |
|
S21.0
|
Monocytes exposed to saline
|
cell type: cultured monocytes
|
|
| Sample_geo_accession | GSM840592
| | Sample_status | Public on Mar 01 2012
| | Sample_submission_date | Nov 29 2011
| | Sample_last_update_date | Mar 01 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | DEP or saline was added to culture media as described.
| | Sample_growth_protocol_ch1 | Human monocytes were extracted from whole blood using ficoll and attached to plastic culture plates.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | 3' IVT express kit
| | Sample_hyb_protocol | 3' IVT express kit
| | Sample_scan_protocol | 3' IVT express kit
| | Sample_data_processing | Analysis done using R 2.9, bioconductor using affy, gcrma, and dependent packages.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Sean,,McGhee
| | Sample_contact_email | smcghee@stanford.edu
| | Sample_contact_phone | 6504986073
| | Sample_contact_fax | 6504986077
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | Stanford University
| | Sample_contact_address | 269 Campus Drive, CCSR Rm 2115
| | Sample_contact_city | Stanford
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 94304
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM840nnn/GSM840592/suppl/GSM840592_S21.0.CEL.gz
| | Sample_series_id | GSE34025
| | Sample_data_row_count | 54675
| | |
|
GSM840593 | GPL570 |
|
S21.DEP
|
Monocytes exposed to DEP
|
cell type: cultured monocytes
|
|
| Sample_geo_accession | GSM840593
| | Sample_status | Public on Mar 01 2012
| | Sample_submission_date | Nov 29 2011
| | Sample_last_update_date | Mar 01 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | DEP or saline was added to culture media as described.
| | Sample_growth_protocol_ch1 | Human monocytes were extracted from whole blood using ficoll and attached to plastic culture plates.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | 3' IVT express kit
| | Sample_hyb_protocol | 3' IVT express kit
| | Sample_scan_protocol | 3' IVT express kit
| | Sample_data_processing | Analysis done using R 2.9, bioconductor using affy, gcrma, and dependent packages.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Sean,,McGhee
| | Sample_contact_email | smcghee@stanford.edu
| | Sample_contact_phone | 6504986073
| | Sample_contact_fax | 6504986077
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | Stanford University
| | Sample_contact_address | 269 Campus Drive, CCSR Rm 2115
| | Sample_contact_city | Stanford
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 94304
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM840nnn/GSM840593/suppl/GSM840593_S21.DEP.CEL.gz
| | Sample_series_id | GSE34025
| | Sample_data_row_count | 54675
| | |
|
| |
| |
Make groups for comparisons |
(2 groups will be compared at a time) |
|
| Select GSMs and click on "Add groups" |
Enter the group name here: |
|
|
|
