Search results for the GEO ID: GSE34065 |
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GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM841210 | GPL1261 |
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T-Cre conditional Tbx1 knockout otic vesicle and periotic mesenchyme tissue at E11.5, biological replicate 1
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E11.5 otic vesicle and periotic mesenchyme, T-Cre conditional Tbx1 knockout
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age: E11.5
genotype: T-Cre conditional Tbx1 knockout
tissue: microdissected otic vesicle and periotic mesenchyme
|
MestKO1_OVPOM
3 pooled embryos.
Gene expression data from E11.5 otic vesicles and periotic mesenchyme at the stage of dorsoventral elongation.
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Sample_geo_accession | GSM841210
| Sample_status | Public on Jan 01 2013
| Sample_submission_date | Nov 30 2011
| Sample_last_update_date | Jan 01 2013
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_growth_protocol_ch1 | Timed matings were dissected at embryonic day 11.5, and periotic tissue was isolated, including otic vesicle and perotic mesenchyme. RNA was isolated from the tissue immediately following dissection.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Qiagen RNeasy Micro kit according to the manufacturer's protocol.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA was prepared according to Affymetrix protocols from 300ng of total RNA.
| Sample_hyb_protocol | 10ug of cRNA was hybridized for 16hrs at 45C on Affymetrix Mouse 430_2 arrays.
| Sample_scan_protocol | Arrays were scanned using the Affymetrix GeneChip 7G Scanner.
| Sample_data_processing | Data was analyzed using Affymetrix Expression Console software version 1.1 using Affymetrix default protocols.
| Sample_platform_id | GPL1261
| Sample_contact_name | Tingwei,,Guo
| Sample_contact_email | tingwei.guo@einstein.yu.edu
| Sample_contact_phone | (718) 678-1122
| Sample_contact_laboratory | Morrow Lab
| Sample_contact_department | Genetics
| Sample_contact_institute | Albert Einstein College of Medicine
| Sample_contact_address | 1301 Morris Park Avenue, Room 408
| Sample_contact_city | Bronx
| Sample_contact_state | NY
| Sample_contact_zip/postal_code | 10461
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM841nnn/GSM841210/suppl/GSM841210.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM841nnn/GSM841210/suppl/GSM841210.CHP.gz
| Sample_series_id | GSE34065
| Sample_series_id | GSE34066
| Sample_data_row_count | 45101
| |
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GSM841211 | GPL1261 |
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T-Cre conditional Tbx1 knockout otic vesicle and periotic mesenchyme tissue at E11.5, biological replicate 2
|
E11.5 otic vesicle and periotic mesenchyme, T-Cre conditional Tbx1 knockout
|
age: E11.5
genotype: T-Cre conditional Tbx1 knockout
tissue: microdissected otic vesicle and periotic mesenchyme
|
MestKO2_OVPOM
3 pooled embryos.
Gene expression data from E11.5 otic vesicles and periotic mesenchyme at the stage of dorsoventral elongation.
|
Sample_geo_accession | GSM841211
| Sample_status | Public on Jan 01 2013
| Sample_submission_date | Nov 30 2011
| Sample_last_update_date | Jan 01 2013
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_growth_protocol_ch1 | Timed matings were dissected at embryonic day 11.5, and periotic tissue was isolated, including otic vesicle and perotic mesenchyme. RNA was isolated from the tissue immediately following dissection.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Qiagen RNeasy Micro kit according to the manufacturer's protocol.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA was prepared according to Affymetrix protocols from 300ng of total RNA.
| Sample_hyb_protocol | 10ug of cRNA was hybridized for 16hrs at 45C on Affymetrix Mouse 430_2 arrays.
| Sample_scan_protocol | Arrays were scanned using the Affymetrix GeneChip 7G Scanner.
| Sample_data_processing | Data was analyzed using Affymetrix Expression Console software version 1.1 using Affymetrix default protocols.
| Sample_platform_id | GPL1261
| Sample_contact_name | Tingwei,,Guo
| Sample_contact_email | tingwei.guo@einstein.yu.edu
| Sample_contact_phone | (718) 678-1122
| Sample_contact_laboratory | Morrow Lab
| Sample_contact_department | Genetics
| Sample_contact_institute | Albert Einstein College of Medicine
| Sample_contact_address | 1301 Morris Park Avenue, Room 408
| Sample_contact_city | Bronx
| Sample_contact_state | NY
| Sample_contact_zip/postal_code | 10461
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM841nnn/GSM841211/suppl/GSM841211.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM841nnn/GSM841211/suppl/GSM841211.CHP.gz
| Sample_series_id | GSE34065
| Sample_series_id | GSE34066
| Sample_data_row_count | 45101
| |
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GSM841212 | GPL1261 |
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T-Cre conditional Tbx1 knockout otic vesicle and periotic mesenchyme tissue at E11.5, biological replicate 3
|
E11.5 otic vesicle and periotic mesenchyme, T-Cre conditional Tbx1 knockout
|
age: E11.5
genotype: T-Cre conditional Tbx1 knockout
tissue: microdissected otic vesicle and periotic mesenchyme
|
MestKO3_OVPOM
3 pooled embryos.
Gene expression data from E11.5 otic vesicles and periotic mesenchyme at the stage of dorsoventral elongation.
|
Sample_geo_accession | GSM841212
| Sample_status | Public on Jan 01 2013
| Sample_submission_date | Nov 30 2011
| Sample_last_update_date | Jan 01 2013
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_growth_protocol_ch1 | Timed matings were dissected at embryonic day 11.5, and periotic tissue was isolated, including otic vesicle and perotic mesenchyme. RNA was isolated from the tissue immediately following dissection.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Qiagen RNeasy Micro kit according to the manufacturer's protocol.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA was prepared according to Affymetrix protocols from 300ng of total RNA.
| Sample_hyb_protocol | 10ug of cRNA was hybridized for 16hrs at 45C on Affymetrix Mouse 430_2 arrays.
| Sample_scan_protocol | Arrays were scanned using the Affymetrix GeneChip 7G Scanner.
| Sample_data_processing | Data was analyzed using Affymetrix Expression Console software version 1.1 using Affymetrix default protocols.
| Sample_platform_id | GPL1261
| Sample_contact_name | Tingwei,,Guo
| Sample_contact_email | tingwei.guo@einstein.yu.edu
| Sample_contact_phone | (718) 678-1122
| Sample_contact_laboratory | Morrow Lab
| Sample_contact_department | Genetics
| Sample_contact_institute | Albert Einstein College of Medicine
| Sample_contact_address | 1301 Morris Park Avenue, Room 408
| Sample_contact_city | Bronx
| Sample_contact_state | NY
| Sample_contact_zip/postal_code | 10461
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM841nnn/GSM841212/suppl/GSM841212.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM841nnn/GSM841212/suppl/GSM841212.CHP.gz
| Sample_series_id | GSE34065
| Sample_series_id | GSE34066
| Sample_data_row_count | 45101
| |
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GSM841213 | GPL1261 |
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T-Cre conditional Tbx1 heterozygous control otic vesicle and periotic mesenchyme tissue at E11.5, biological replicate 1
|
E11.5 otic vesicle and periotic mesenchyme, T-Cre conditional Tbx1 heterozygous control
|
age: E11.5
genotype: T-Cre conditional Tbx1 heterozygote
tissue: microdissected otic vesicle and periotic mesenchyme
|
Control1_OVPOM
3 pooled embryos.
Gene expression data from E11.5 otic vesicles and periotic mesenchyme at the stage of dorsoventral elongation.
|
Sample_geo_accession | GSM841213
| Sample_status | Public on Jan 01 2013
| Sample_submission_date | Nov 30 2011
| Sample_last_update_date | Jan 01 2013
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_growth_protocol_ch1 | Timed matings were dissected at embryonic day 11.5, and periotic tissue was isolated, including otic vesicle and perotic mesenchyme. RNA was isolated from the tissue immediately following dissection.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Qiagen RNeasy Micro kit according to the manufacturer's protocol.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA was prepared according to Affymetrix protocols from 300ng of total RNA.
| Sample_hyb_protocol | 10ug of cRNA was hybridized for 16hrs at 45C on Affymetrix Mouse 430_2 arrays.
| Sample_scan_protocol | Arrays were scanned using the Affymetrix GeneChip 7G Scanner.
| Sample_data_processing | Data was analyzed using Affymetrix Expression Console software version 1.1 using Affymetrix default protocols.
| Sample_platform_id | GPL1261
| Sample_contact_name | Tingwei,,Guo
| Sample_contact_email | tingwei.guo@einstein.yu.edu
| Sample_contact_phone | (718) 678-1122
| Sample_contact_laboratory | Morrow Lab
| Sample_contact_department | Genetics
| Sample_contact_institute | Albert Einstein College of Medicine
| Sample_contact_address | 1301 Morris Park Avenue, Room 408
| Sample_contact_city | Bronx
| Sample_contact_state | NY
| Sample_contact_zip/postal_code | 10461
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM841nnn/GSM841213/suppl/GSM841213.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM841nnn/GSM841213/suppl/GSM841213.CHP.gz
| Sample_series_id | GSE34065
| Sample_series_id | GSE34066
| Sample_data_row_count | 45101
| |
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GSM841214 | GPL1261 |
|
T-Cre conditional Tbx1 heterozygous control otic vesicle and periotic mesenchyme tissue at E11.5, biological replicate 2
|
E11.5 otic vesicle and periotic mesenchyme, T-Cre conditional Tbx1 heterozygous control
|
age: E11.5
genotype: T-Cre conditional Tbx1 heterozygote
tissue: microdissected otic vesicle and periotic mesenchyme
|
Control2_OVPOM
3 pooled embryos.
Gene expression data from E11.5 otic vesicles and periotic mesenchyme at the stage of dorsoventral elongation.
|
Sample_geo_accession | GSM841214
| Sample_status | Public on Jan 01 2013
| Sample_submission_date | Nov 30 2011
| Sample_last_update_date | Jan 01 2013
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_growth_protocol_ch1 | Timed matings were dissected at embryonic day 11.5, and periotic tissue was isolated, including otic vesicle and perotic mesenchyme. RNA was isolated from the tissue immediately following dissection.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Qiagen RNeasy Micro kit according to the manufacturer's protocol.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA was prepared according to Affymetrix protocols from 300ng of total RNA.
| Sample_hyb_protocol | 10ug of cRNA was hybridized for 16hrs at 45C on Affymetrix Mouse 430_2 arrays.
| Sample_scan_protocol | Arrays were scanned using the Affymetrix GeneChip 7G Scanner.
| Sample_data_processing | Data was analyzed using Affymetrix Expression Console software version 1.1 using Affymetrix default protocols.
| Sample_platform_id | GPL1261
| Sample_contact_name | Tingwei,,Guo
| Sample_contact_email | tingwei.guo@einstein.yu.edu
| Sample_contact_phone | (718) 678-1122
| Sample_contact_laboratory | Morrow Lab
| Sample_contact_department | Genetics
| Sample_contact_institute | Albert Einstein College of Medicine
| Sample_contact_address | 1301 Morris Park Avenue, Room 408
| Sample_contact_city | Bronx
| Sample_contact_state | NY
| Sample_contact_zip/postal_code | 10461
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM841nnn/GSM841214/suppl/GSM841214.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM841nnn/GSM841214/suppl/GSM841214.CHP.gz
| Sample_series_id | GSE34065
| Sample_series_id | GSE34066
| Sample_data_row_count | 45101
| |
|
GSM841215 | GPL1261 |
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T-Cre conditional Tbx1 heterozygous control otic vesicle and periotic mesenchyme tissue at E11.5, biological replicate 3
|
E11.5 otic vesicle and periotic mesenchyme, T-Cre conditional Tbx1 heterozygous control
|
age: E11.5
genotype: T-Cre conditional Tbx1 heterozygote
tissue: microdissected otic vesicle and periotic mesenchyme
|
Control3_OVPOM
3 pooled embryos.
Gene expression data from E11.5 otic vesicles and periotic mesenchyme at the stage of dorsoventral elongation.
|
Sample_geo_accession | GSM841215
| Sample_status | Public on Jan 01 2013
| Sample_submission_date | Nov 30 2011
| Sample_last_update_date | Jan 01 2013
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_growth_protocol_ch1 | Timed matings were dissected at embryonic day 11.5, and periotic tissue was isolated, including otic vesicle and perotic mesenchyme. RNA was isolated from the tissue immediately following dissection.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Qiagen RNeasy Micro kit according to the manufacturer's protocol.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA was prepared according to Affymetrix protocols from 300ng of total RNA.
| Sample_hyb_protocol | 10ug of cRNA was hybridized for 16hrs at 45C on Affymetrix Mouse 430_2 arrays.
| Sample_scan_protocol | Arrays were scanned using the Affymetrix GeneChip 7G Scanner.
| Sample_data_processing | Data was analyzed using Affymetrix Expression Console software version 1.1 using Affymetrix default protocols.
| Sample_platform_id | GPL1261
| Sample_contact_name | Tingwei,,Guo
| Sample_contact_email | tingwei.guo@einstein.yu.edu
| Sample_contact_phone | (718) 678-1122
| Sample_contact_laboratory | Morrow Lab
| Sample_contact_department | Genetics
| Sample_contact_institute | Albert Einstein College of Medicine
| Sample_contact_address | 1301 Morris Park Avenue, Room 408
| Sample_contact_city | Bronx
| Sample_contact_state | NY
| Sample_contact_zip/postal_code | 10461
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM841nnn/GSM841215/suppl/GSM841215.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM841nnn/GSM841215/suppl/GSM841215.CHP.gz
| Sample_series_id | GSE34065
| Sample_series_id | GSE34066
| Sample_data_row_count | 45101
| |
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