Search results for the GEO ID: GSE34091  |
(Click on the check boxes provided under "Select for analysis", to initiate grouping) |
(Once the selection is made, click on "Add groups" in "Make groups for comparison", to make a group. Scroll down) |
|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM841698 | GPL1261 |
|
testis-wt-1
|
testis day P23
|
tissue: testis
|
Gene expression data from wildtype testis
|
| Sample_geo_accession | GSM841698
| | Sample_status | Public on Jul 25 2012
| | Sample_submission_date | Dec 02 2011
| | Sample_last_update_date | Jul 25 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix)
| | Sample_hyb_protocol | cRNA was hybridized to the GeneChip Mouse Genome 430 2.0 array. GeneChips were washed and stained in the Affymetrix Fluidics Station Fluidics 450
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneArray scanner 3000
| | Sample_data_processing | The data was normalized by Robust Multi-Array average (RMA) algorithm
| | Sample_platform_id | GPL1261
| | Sample_contact_name | frank,,sleutels
| | Sample_contact_department | cell biology and genetics
| | Sample_contact_institute | ErasmusMC
| | Sample_contact_address | Dr Molewaterplein 50
| | Sample_contact_city | Rotterdam
| | Sample_contact_zip/postal_code | 3015 GE
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM841nnn/GSM841698/suppl/GSM841698_1wt.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM841nnn/GSM841698/suppl/GSM841698_1wt.CHP.gz
| | Sample_series_id | GSE34091
| | Sample_series_id | GSE34093
| | Sample_data_row_count | 45101
| | |
|
GSM841699 | GPL1261 |
|
testis-wt-2
|
testis day P23
|
tissue: testis
|
Gene expression data from wildtype testis
|
| Sample_geo_accession | GSM841699
| | Sample_status | Public on Jul 25 2012
| | Sample_submission_date | Dec 02 2011
| | Sample_last_update_date | Jul 25 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix)
| | Sample_hyb_protocol | cRNA was hybridized to the GeneChip Mouse Genome 430 2.0 array. GeneChips were washed and stained in the Affymetrix Fluidics Station Fluidics 450
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneArray scanner 3000
| | Sample_data_processing | The data was normalized by Robust Multi-Array average (RMA) algorithm
| | Sample_platform_id | GPL1261
| | Sample_contact_name | frank,,sleutels
| | Sample_contact_department | cell biology and genetics
| | Sample_contact_institute | ErasmusMC
| | Sample_contact_address | Dr Molewaterplein 50
| | Sample_contact_city | Rotterdam
| | Sample_contact_zip/postal_code | 3015 GE
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM841nnn/GSM841699/suppl/GSM841699_2wt.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM841nnn/GSM841699/suppl/GSM841699_2wt.CHP.gz
| | Sample_series_id | GSE34091
| | Sample_series_id | GSE34093
| | Sample_data_row_count | 45101
| | |
|
GSM841700 | GPL1261 |
|
testis-ko-3
|
testis day P23
|
tissue: testis
|
Gene expression data from CTCFL mutant testis
|
| Sample_geo_accession | GSM841700
| | Sample_status | Public on Jul 25 2012
| | Sample_submission_date | Dec 02 2011
| | Sample_last_update_date | Jul 25 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix)
| | Sample_hyb_protocol | cRNA was hybridized to the GeneChip Mouse Genome 430 2.0 array. GeneChips were washed and stained in the Affymetrix Fluidics Station Fluidics 450
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneArray scanner 3000
| | Sample_data_processing | The data was normalized by Robust Multi-Array average (RMA) algorithm
| | Sample_platform_id | GPL1261
| | Sample_contact_name | frank,,sleutels
| | Sample_contact_department | cell biology and genetics
| | Sample_contact_institute | ErasmusMC
| | Sample_contact_address | Dr Molewaterplein 50
| | Sample_contact_city | Rotterdam
| | Sample_contact_zip/postal_code | 3015 GE
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM841nnn/GSM841700/suppl/GSM841700_3del.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM841nnn/GSM841700/suppl/GSM841700_3del.CHP.gz
| | Sample_series_id | GSE34091
| | Sample_series_id | GSE34093
| | Sample_data_row_count | 45101
| | |
|
GSM841701 | GPL1261 |
|
testis-wt-4
|
testis day P23
|
tissue: testis
|
Gene expression data from wildtype testis
|
| Sample_geo_accession | GSM841701
| | Sample_status | Public on Jul 25 2012
| | Sample_submission_date | Dec 02 2011
| | Sample_last_update_date | Jul 25 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix)
| | Sample_hyb_protocol | cRNA was hybridized to the GeneChip Mouse Genome 430 2.0 array. GeneChips were washed and stained in the Affymetrix Fluidics Station Fluidics 450
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneArray scanner 3000
| | Sample_data_processing | The data was normalized by Robust Multi-Array average (RMA) algorithm
| | Sample_platform_id | GPL1261
| | Sample_contact_name | frank,,sleutels
| | Sample_contact_department | cell biology and genetics
| | Sample_contact_institute | ErasmusMC
| | Sample_contact_address | Dr Molewaterplein 50
| | Sample_contact_city | Rotterdam
| | Sample_contact_zip/postal_code | 3015 GE
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM841nnn/GSM841701/suppl/GSM841701_4wt.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM841nnn/GSM841701/suppl/GSM841701_4wt.CHP.gz
| | Sample_series_id | GSE34091
| | Sample_series_id | GSE34093
| | Sample_data_row_count | 45101
| | |
|
GSM841702 | GPL1261 |
|
testis-ko-5
|
testis day P23
|
tissue: testis
|
Gene expression data from CTCFL mutant testis
|
| Sample_geo_accession | GSM841702
| | Sample_status | Public on Jul 25 2012
| | Sample_submission_date | Dec 02 2011
| | Sample_last_update_date | Jul 25 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix)
| | Sample_hyb_protocol | cRNA was hybridized to the GeneChip Mouse Genome 430 2.0 array. GeneChips were washed and stained in the Affymetrix Fluidics Station Fluidics 450
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneArray scanner 3000
| | Sample_data_processing | The data was normalized by Robust Multi-Array average (RMA) algorithm
| | Sample_platform_id | GPL1261
| | Sample_contact_name | frank,,sleutels
| | Sample_contact_department | cell biology and genetics
| | Sample_contact_institute | ErasmusMC
| | Sample_contact_address | Dr Molewaterplein 50
| | Sample_contact_city | Rotterdam
| | Sample_contact_zip/postal_code | 3015 GE
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM841nnn/GSM841702/suppl/GSM841702_5del.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM841nnn/GSM841702/suppl/GSM841702_5del.CHP.gz
| | Sample_series_id | GSE34091
| | Sample_series_id | GSE34093
| | Sample_data_row_count | 45101
| | |
|
GSM841703 | GPL1261 |
|
testis-wt-6
|
testis day P23
|
tissue: testis
|
Gene expression data from wildtype testis
|
| Sample_geo_accession | GSM841703
| | Sample_status | Public on Jul 25 2012
| | Sample_submission_date | Dec 02 2011
| | Sample_last_update_date | Jul 25 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix)
| | Sample_hyb_protocol | cRNA was hybridized to the GeneChip Mouse Genome 430 2.0 array. GeneChips were washed and stained in the Affymetrix Fluidics Station Fluidics 450
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneArray scanner 3000
| | Sample_data_processing | The data was normalized by Robust Multi-Array average (RMA) algorithm
| | Sample_platform_id | GPL1261
| | Sample_contact_name | frank,,sleutels
| | Sample_contact_department | cell biology and genetics
| | Sample_contact_institute | ErasmusMC
| | Sample_contact_address | Dr Molewaterplein 50
| | Sample_contact_city | Rotterdam
| | Sample_contact_zip/postal_code | 3015 GE
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM841nnn/GSM841703/suppl/GSM841703_6wt.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM841nnn/GSM841703/suppl/GSM841703_6wt.CHP.gz
| | Sample_series_id | GSE34091
| | Sample_series_id | GSE34093
| | Sample_data_row_count | 45101
| | |
|
GSM841704 | GPL1261 |
|
testis-wt-7
|
testis day P23
|
tissue: testis
|
Gene expression data from wildtype testis
|
| Sample_geo_accession | GSM841704
| | Sample_status | Public on Jul 25 2012
| | Sample_submission_date | Dec 02 2011
| | Sample_last_update_date | Jul 25 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix)
| | Sample_hyb_protocol | cRNA was hybridized to the GeneChip Mouse Genome 430 2.0 array. GeneChips were washed and stained in the Affymetrix Fluidics Station Fluidics 450
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneArray scanner 3000
| | Sample_data_processing | The data was normalized by Robust Multi-Array average (RMA) algorithm
| | Sample_platform_id | GPL1261
| | Sample_contact_name | frank,,sleutels
| | Sample_contact_department | cell biology and genetics
| | Sample_contact_institute | ErasmusMC
| | Sample_contact_address | Dr Molewaterplein 50
| | Sample_contact_city | Rotterdam
| | Sample_contact_zip/postal_code | 3015 GE
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM841nnn/GSM841704/suppl/GSM841704_7wt.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM841nnn/GSM841704/suppl/GSM841704_7wt.CHP.gz
| | Sample_series_id | GSE34091
| | Sample_series_id | GSE34093
| | Sample_data_row_count | 45101
| | |
|
GSM841705 | GPL1261 |
|
testis-ko-8
|
testis day P23
|
tissue: testis
|
Gene expression data from CTCFL mutant testis
|
| Sample_geo_accession | GSM841705
| | Sample_status | Public on Jul 25 2012
| | Sample_submission_date | Dec 02 2011
| | Sample_last_update_date | Jul 25 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix)
| | Sample_hyb_protocol | cRNA was hybridized to the GeneChip Mouse Genome 430 2.0 array. GeneChips were washed and stained in the Affymetrix Fluidics Station Fluidics 450
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneArray scanner 3000
| | Sample_data_processing | The data was normalized by Robust Multi-Array average (RMA) algorithm
| | Sample_platform_id | GPL1261
| | Sample_contact_name | frank,,sleutels
| | Sample_contact_department | cell biology and genetics
| | Sample_contact_institute | ErasmusMC
| | Sample_contact_address | Dr Molewaterplein 50
| | Sample_contact_city | Rotterdam
| | Sample_contact_zip/postal_code | 3015 GE
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM841nnn/GSM841705/suppl/GSM841705_8del.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM841nnn/GSM841705/suppl/GSM841705_8del.CHP.gz
| | Sample_series_id | GSE34091
| | Sample_series_id | GSE34093
| | Sample_data_row_count | 45101
| | |
|
| |
| |
Make groups for comparisons |
(2 groups will be compared at a time) |
|
| Select GSMs and click on "Add groups" |
Enter the group name here: |
|
|
|
