Search results for the GEO ID: GSE34156  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM843210 | GPL570 |
|
Donor 1 sample1
|
media t0h
|
tissue: healthy human blood
cell type: monocytes
|
141980
|
| Sample_geo_accession | GSM843210
| | Sample_status | Public on Mar 15 2012
| | Sample_submission_date | Dec 05 2011
| | Sample_last_update_date | Mar 15 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Monocytes were activated using the NOD2L (MDP) and/or the TLR2/1L (19kD)
| | Sample_growth_protocol_ch1 | Human monocytes were purified from healthy donors and subsequently cultured in RPMI/ 10% human serum (Vitamin D3 sufficient)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was extracted using trizol method and further purified using RNAeasy mini kit (Qiagen)
| | Sample_label_ch1 | pCp-Biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol by UCLA DNA microarray core facility
| | Sample_hyb_protocol | Standard Affymetrix protocol by UCLA DNA microarray core facility
| | Sample_scan_protocol | Standard Affymetrix protocol by UCLA DNA microarray core facility
| | Sample_data_processing | UCLA DNA microarray core facility, normalized with dCHIP using invariant set normalization method. Data were normalized and present calls used to calculate fold change vs media control.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Mirjam,,Schenk
| | Sample_contact_email | mschenk@mednet.ucla.edu
| | Sample_contact_phone | 310 8256910
| | Sample_contact_institute | UCLA
| | Sample_contact_address | 615 Charles E young Dr S
| | Sample_contact_city | Los Angeles
| | Sample_contact_zip/postal_code | 90095
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM843nnn/GSM843210/suppl/GSM843210_141980.CEL.gz
| | Sample_series_id | GSE34156
| | Sample_data_row_count | 54675
| | |
|
GSM843211 | GPL570 |
|
Donor 1 sample2
|
media t6h
|
tissue: healthy human blood
cell type: monocytes
|
141985
|
| Sample_geo_accession | GSM843211
| | Sample_status | Public on Mar 15 2012
| | Sample_submission_date | Dec 05 2011
| | Sample_last_update_date | Mar 15 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Monocytes were activated using the NOD2L (MDP) and/or the TLR2/1L (19kD)
| | Sample_growth_protocol_ch1 | Human monocytes were purified from healthy donors and subsequently cultured in RPMI/ 10% human serum (Vitamin D3 sufficient)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was extracted using trizol method and further purified using RNAeasy mini kit (Qiagen)
| | Sample_label_ch1 | pCp-Biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol by UCLA DNA microarray core facility
| | Sample_hyb_protocol | Standard Affymetrix protocol by UCLA DNA microarray core facility
| | Sample_scan_protocol | Standard Affymetrix protocol by UCLA DNA microarray core facility
| | Sample_data_processing | UCLA DNA microarray core facility, normalized with dCHIP using invariant set normalization method. Data were normalized and present calls used to calculate fold change vs media control.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Mirjam,,Schenk
| | Sample_contact_email | mschenk@mednet.ucla.edu
| | Sample_contact_phone | 310 8256910
| | Sample_contact_institute | UCLA
| | Sample_contact_address | 615 Charles E young Dr S
| | Sample_contact_city | Los Angeles
| | Sample_contact_zip/postal_code | 90095
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM843nnn/GSM843211/suppl/GSM843211_141985.CEL.gz
| | Sample_series_id | GSE34156
| | Sample_data_row_count | 54675
| | |
|
GSM843212 | GPL570 |
|
Donor 1 sample3
|
NOD2L t6h
|
tissue: healthy human blood
cell type: monocytes
|
141986
|
| Sample_geo_accession | GSM843212
| | Sample_status | Public on Mar 15 2012
| | Sample_submission_date | Dec 05 2011
| | Sample_last_update_date | Mar 15 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Monocytes were activated using the NOD2L (MDP) and/or the TLR2/1L (19kD)
| | Sample_growth_protocol_ch1 | Human monocytes were purified from healthy donors and subsequently cultured in RPMI/ 10% human serum (Vitamin D3 sufficient)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was extracted using trizol method and further purified using RNAeasy mini kit (Qiagen)
| | Sample_label_ch1 | pCp-Biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol by UCLA DNA microarray core facility
| | Sample_hyb_protocol | Standard Affymetrix protocol by UCLA DNA microarray core facility
| | Sample_scan_protocol | Standard Affymetrix protocol by UCLA DNA microarray core facility
| | Sample_data_processing | UCLA DNA microarray core facility, normalized with dCHIP using invariant set normalization method. Data were normalized and present calls used to calculate fold change vs media control.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Mirjam,,Schenk
| | Sample_contact_email | mschenk@mednet.ucla.edu
| | Sample_contact_phone | 310 8256910
| | Sample_contact_institute | UCLA
| | Sample_contact_address | 615 Charles E young Dr S
| | Sample_contact_city | Los Angeles
| | Sample_contact_zip/postal_code | 90095
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM843nnn/GSM843212/suppl/GSM843212_141986.CEL.gz
| | Sample_series_id | GSE34156
| | Sample_data_row_count | 54675
| | |
|
GSM843213 | GPL570 |
|
Donor 1 sample4
|
TLR2/1L t6h
|
tissue: healthy human blood
cell type: monocytes
|
141987
|
| Sample_geo_accession | GSM843213
| | Sample_status | Public on Mar 15 2012
| | Sample_submission_date | Dec 05 2011
| | Sample_last_update_date | Mar 15 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Monocytes were activated using the NOD2L (MDP) and/or the TLR2/1L (19kD)
| | Sample_growth_protocol_ch1 | Human monocytes were purified from healthy donors and subsequently cultured in RPMI/ 10% human serum (Vitamin D3 sufficient)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was extracted using trizol method and further purified using RNAeasy mini kit (Qiagen)
| | Sample_label_ch1 | pCp-Biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol by UCLA DNA microarray core facility
| | Sample_hyb_protocol | Standard Affymetrix protocol by UCLA DNA microarray core facility
| | Sample_scan_protocol | Standard Affymetrix protocol by UCLA DNA microarray core facility
| | Sample_data_processing | UCLA DNA microarray core facility, normalized with dCHIP using invariant set normalization method. Data were normalized and present calls used to calculate fold change vs media control.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Mirjam,,Schenk
| | Sample_contact_email | mschenk@mednet.ucla.edu
| | Sample_contact_phone | 310 8256910
| | Sample_contact_institute | UCLA
| | Sample_contact_address | 615 Charles E young Dr S
| | Sample_contact_city | Los Angeles
| | Sample_contact_zip/postal_code | 90095
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM843nnn/GSM843213/suppl/GSM843213_141987.CEL.gz
| | Sample_series_id | GSE34156
| | Sample_data_row_count | 54675
| | |
|
GSM843214 | GPL570 |
|
Donor 1 sample5
|
NOD2L+ TLR2/1L t6h
|
tissue: healthy human blood
cell type: monocytes
|
141988
|
| Sample_geo_accession | GSM843214
| | Sample_status | Public on Mar 15 2012
| | Sample_submission_date | Dec 05 2011
| | Sample_last_update_date | Mar 15 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Monocytes were activated using the NOD2L (MDP) and/or the TLR2/1L (19kD)
| | Sample_growth_protocol_ch1 | Human monocytes were purified from healthy donors and subsequently cultured in RPMI/ 10% human serum (Vitamin D3 sufficient)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was extracted using trizol method and further purified using RNAeasy mini kit (Qiagen)
| | Sample_label_ch1 | pCp-Biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol by UCLA DNA microarray core facility
| | Sample_hyb_protocol | Standard Affymetrix protocol by UCLA DNA microarray core facility
| | Sample_scan_protocol | Standard Affymetrix protocol by UCLA DNA microarray core facility
| | Sample_data_processing | UCLA DNA microarray core facility, normalized with dCHIP using invariant set normalization method. Data were normalized and present calls used to calculate fold change vs media control.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Mirjam,,Schenk
| | Sample_contact_email | mschenk@mednet.ucla.edu
| | Sample_contact_phone | 310 8256910
| | Sample_contact_institute | UCLA
| | Sample_contact_address | 615 Charles E young Dr S
| | Sample_contact_city | Los Angeles
| | Sample_contact_zip/postal_code | 90095
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM843nnn/GSM843214/suppl/GSM843214_141988.CEL.gz
| | Sample_series_id | GSE34156
| | Sample_data_row_count | 54675
| | |
|
GSM843215 | GPL570 |
|
Donor 1 sample6
|
media t24h
|
tissue: healthy human blood
cell type: monocytes
|
141989
|
| Sample_geo_accession | GSM843215
| | Sample_status | Public on Mar 15 2012
| | Sample_submission_date | Dec 05 2011
| | Sample_last_update_date | Mar 15 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Monocytes were activated using the NOD2L (MDP) and/or the TLR2/1L (19kD)
| | Sample_growth_protocol_ch1 | Human monocytes were purified from healthy donors and subsequently cultured in RPMI/ 10% human serum (Vitamin D3 sufficient)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was extracted using trizol method and further purified using RNAeasy mini kit (Qiagen)
| | Sample_label_ch1 | pCp-Biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol by UCLA DNA microarray core facility
| | Sample_hyb_protocol | Standard Affymetrix protocol by UCLA DNA microarray core facility
| | Sample_scan_protocol | Standard Affymetrix protocol by UCLA DNA microarray core facility
| | Sample_data_processing | UCLA DNA microarray core facility, normalized with dCHIP using invariant set normalization method. Data were normalized and present calls used to calculate fold change vs media control.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Mirjam,,Schenk
| | Sample_contact_email | mschenk@mednet.ucla.edu
| | Sample_contact_phone | 310 8256910
| | Sample_contact_institute | UCLA
| | Sample_contact_address | 615 Charles E young Dr S
| | Sample_contact_city | Los Angeles
| | Sample_contact_zip/postal_code | 90095
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM843nnn/GSM843215/suppl/GSM843215_141989.CEL.gz
| | Sample_series_id | GSE34156
| | Sample_data_row_count | 54675
| | |
|
GSM843216 | GPL570 |
|
Donor 1 sample7
|
NOD2L t24h
|
tissue: healthy human blood
cell type: monocytes
|
141990
|
| Sample_geo_accession | GSM843216
| | Sample_status | Public on Mar 15 2012
| | Sample_submission_date | Dec 05 2011
| | Sample_last_update_date | Mar 15 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Monocytes were activated using the NOD2L (MDP) and/or the TLR2/1L (19kD)
| | Sample_growth_protocol_ch1 | Human monocytes were purified from healthy donors and subsequently cultured in RPMI/ 10% human serum (Vitamin D3 sufficient)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was extracted using trizol method and further purified using RNAeasy mini kit (Qiagen)
| | Sample_label_ch1 | pCp-Biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol by UCLA DNA microarray core facility
| | Sample_hyb_protocol | Standard Affymetrix protocol by UCLA DNA microarray core facility
| | Sample_scan_protocol | Standard Affymetrix protocol by UCLA DNA microarray core facility
| | Sample_data_processing | UCLA DNA microarray core facility, normalized with dCHIP using invariant set normalization method. Data were normalized and present calls used to calculate fold change vs media control.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Mirjam,,Schenk
| | Sample_contact_email | mschenk@mednet.ucla.edu
| | Sample_contact_phone | 310 8256910
| | Sample_contact_institute | UCLA
| | Sample_contact_address | 615 Charles E young Dr S
| | Sample_contact_city | Los Angeles
| | Sample_contact_zip/postal_code | 90095
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM843nnn/GSM843216/suppl/GSM843216_141990.CEL.gz
| | Sample_series_id | GSE34156
| | Sample_data_row_count | 54675
| | |
|
GSM843217 | GPL570 |
|
Donor 1 sample8
|
TLR2/1L t24h
|
tissue: healthy human blood
cell type: monocytes
|
141991
|
| Sample_geo_accession | GSM843217
| | Sample_status | Public on Mar 15 2012
| | Sample_submission_date | Dec 05 2011
| | Sample_last_update_date | Mar 15 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Monocytes were activated using the NOD2L (MDP) and/or the TLR2/1L (19kD)
| | Sample_growth_protocol_ch1 | Human monocytes were purified from healthy donors and subsequently cultured in RPMI/ 10% human serum (Vitamin D3 sufficient)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was extracted using trizol method and further purified using RNAeasy mini kit (Qiagen)
| | Sample_label_ch1 | pCp-Biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol by UCLA DNA microarray core facility
| | Sample_hyb_protocol | Standard Affymetrix protocol by UCLA DNA microarray core facility
| | Sample_scan_protocol | Standard Affymetrix protocol by UCLA DNA microarray core facility
| | Sample_data_processing | UCLA DNA microarray core facility, normalized with dCHIP using invariant set normalization method. Data were normalized and present calls used to calculate fold change vs media control.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Mirjam,,Schenk
| | Sample_contact_email | mschenk@mednet.ucla.edu
| | Sample_contact_phone | 310 8256910
| | Sample_contact_institute | UCLA
| | Sample_contact_address | 615 Charles E young Dr S
| | Sample_contact_city | Los Angeles
| | Sample_contact_zip/postal_code | 90095
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM843nnn/GSM843217/suppl/GSM843217_141991.CEL.gz
| | Sample_series_id | GSE34156
| | Sample_data_row_count | 54675
| | |
|
GSM843218 | GPL570 |
|
Donor 1 sample9
|
NOD2L+ TLR2/1L t24h
|
tissue: healthy human blood
cell type: monocytes
|
141992
|
| Sample_geo_accession | GSM843218
| | Sample_status | Public on Mar 15 2012
| | Sample_submission_date | Dec 05 2011
| | Sample_last_update_date | Mar 15 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Monocytes were activated using the NOD2L (MDP) and/or the TLR2/1L (19kD)
| | Sample_growth_protocol_ch1 | Human monocytes were purified from healthy donors and subsequently cultured in RPMI/ 10% human serum (Vitamin D3 sufficient)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was extracted using trizol method and further purified using RNAeasy mini kit (Qiagen)
| | Sample_label_ch1 | pCp-Biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol by UCLA DNA microarray core facility
| | Sample_hyb_protocol | Standard Affymetrix protocol by UCLA DNA microarray core facility
| | Sample_scan_protocol | Standard Affymetrix protocol by UCLA DNA microarray core facility
| | Sample_data_processing | UCLA DNA microarray core facility, normalized with dCHIP using invariant set normalization method. Data were normalized and present calls used to calculate fold change vs media control.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Mirjam,,Schenk
| | Sample_contact_email | mschenk@mednet.ucla.edu
| | Sample_contact_phone | 310 8256910
| | Sample_contact_institute | UCLA
| | Sample_contact_address | 615 Charles E young Dr S
| | Sample_contact_city | Los Angeles
| | Sample_contact_zip/postal_code | 90095
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM843nnn/GSM843218/suppl/GSM843218_141992.CEL.gz
| | Sample_series_id | GSE34156
| | Sample_data_row_count | 54675
| | |
|
GSM843219 | GPL570 |
|
Donor 2 sample1
|
media t0h
|
tissue: healthy human blood
cell type: monocytes
|
141981
|
| Sample_geo_accession | GSM843219
| | Sample_status | Public on Mar 15 2012
| | Sample_submission_date | Dec 05 2011
| | Sample_last_update_date | Mar 15 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Monocytes were activated using the NOD2L (MDP) and/or the TLR2/1L (19kD)
| | Sample_growth_protocol_ch1 | Human monocytes were purified from healthy donors and subsequently cultured in RPMI/ 10% human serum (Vitamin D3 sufficient)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was extracted using trizol method and further purified using RNAeasy mini kit (Qiagen)
| | Sample_label_ch1 | pCp-Biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol by UCLA DNA microarray core facility
| | Sample_hyb_protocol | Standard Affymetrix protocol by UCLA DNA microarray core facility
| | Sample_scan_protocol | Standard Affymetrix protocol by UCLA DNA microarray core facility
| | Sample_data_processing | UCLA DNA microarray core facility, normalized with dCHIP using invariant set normalization method. Data were normalized and present calls used to calculate fold change vs media control.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Mirjam,,Schenk
| | Sample_contact_email | mschenk@mednet.ucla.edu
| | Sample_contact_phone | 310 8256910
| | Sample_contact_institute | UCLA
| | Sample_contact_address | 615 Charles E young Dr S
| | Sample_contact_city | Los Angeles
| | Sample_contact_zip/postal_code | 90095
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM843nnn/GSM843219/suppl/GSM843219_141981.CEL.gz
| | Sample_series_id | GSE34156
| | Sample_data_row_count | 54675
| | |
|
GSM843220 | GPL570 |
|
Donor 2 sample2
|
media t6h
|
tissue: healthy human blood
cell type: monocytes
|
141993
|
| Sample_geo_accession | GSM843220
| | Sample_status | Public on Mar 15 2012
| | Sample_submission_date | Dec 05 2011
| | Sample_last_update_date | Mar 15 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Monocytes were activated using the NOD2L (MDP) and/or the TLR2/1L (19kD)
| | Sample_growth_protocol_ch1 | Human monocytes were purified from healthy donors and subsequently cultured in RPMI/ 10% human serum (Vitamin D3 sufficient)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was extracted using trizol method and further purified using RNAeasy mini kit (Qiagen)
| | Sample_label_ch1 | pCp-Biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol by UCLA DNA microarray core facility
| | Sample_hyb_protocol | Standard Affymetrix protocol by UCLA DNA microarray core facility
| | Sample_scan_protocol | Standard Affymetrix protocol by UCLA DNA microarray core facility
| | Sample_data_processing | UCLA DNA microarray core facility, normalized with dCHIP using invariant set normalization method. Data were normalized and present calls used to calculate fold change vs media control.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Mirjam,,Schenk
| | Sample_contact_email | mschenk@mednet.ucla.edu
| | Sample_contact_phone | 310 8256910
| | Sample_contact_institute | UCLA
| | Sample_contact_address | 615 Charles E young Dr S
| | Sample_contact_city | Los Angeles
| | Sample_contact_zip/postal_code | 90095
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM843nnn/GSM843220/suppl/GSM843220_141993.CEL.gz
| | Sample_series_id | GSE34156
| | Sample_data_row_count | 54675
| | |
|
GSM843221 | GPL570 |
|
Donor 2 sample3
|
NOD2L t6h
|
tissue: healthy human blood
cell type: monocytes
|
141994
|
| Sample_geo_accession | GSM843221
| | Sample_status | Public on Mar 15 2012
| | Sample_submission_date | Dec 05 2011
| | Sample_last_update_date | Mar 15 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Monocytes were activated using the NOD2L (MDP) and/or the TLR2/1L (19kD)
| | Sample_growth_protocol_ch1 | Human monocytes were purified from healthy donors and subsequently cultured in RPMI/ 10% human serum (Vitamin D3 sufficient)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was extracted using trizol method and further purified using RNAeasy mini kit (Qiagen)
| | Sample_label_ch1 | pCp-Biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol by UCLA DNA microarray core facility
| | Sample_hyb_protocol | Standard Affymetrix protocol by UCLA DNA microarray core facility
| | Sample_scan_protocol | Standard Affymetrix protocol by UCLA DNA microarray core facility
| | Sample_data_processing | UCLA DNA microarray core facility, normalized with dCHIP using invariant set normalization method. Data were normalized and present calls used to calculate fold change vs media control.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Mirjam,,Schenk
| | Sample_contact_email | mschenk@mednet.ucla.edu
| | Sample_contact_phone | 310 8256910
| | Sample_contact_institute | UCLA
| | Sample_contact_address | 615 Charles E young Dr S
| | Sample_contact_city | Los Angeles
| | Sample_contact_zip/postal_code | 90095
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM843nnn/GSM843221/suppl/GSM843221_141994.CEL.gz
| | Sample_series_id | GSE34156
| | Sample_data_row_count | 54675
| | |
|
GSM843222 | GPL570 |
|
Donor 2 sample4
|
TLR2/1L t6h
|
tissue: healthy human blood
cell type: monocytes
|
141995
|
| Sample_geo_accession | GSM843222
| | Sample_status | Public on Mar 15 2012
| | Sample_submission_date | Dec 05 2011
| | Sample_last_update_date | Mar 15 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Monocytes were activated using the NOD2L (MDP) and/or the TLR2/1L (19kD)
| | Sample_growth_protocol_ch1 | Human monocytes were purified from healthy donors and subsequently cultured in RPMI/ 10% human serum (Vitamin D3 sufficient)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was extracted using trizol method and further purified using RNAeasy mini kit (Qiagen)
| | Sample_label_ch1 | pCp-Biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol by UCLA DNA microarray core facility
| | Sample_hyb_protocol | Standard Affymetrix protocol by UCLA DNA microarray core facility
| | Sample_scan_protocol | Standard Affymetrix protocol by UCLA DNA microarray core facility
| | Sample_data_processing | UCLA DNA microarray core facility, normalized with dCHIP using invariant set normalization method. Data were normalized and present calls used to calculate fold change vs media control.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Mirjam,,Schenk
| | Sample_contact_email | mschenk@mednet.ucla.edu
| | Sample_contact_phone | 310 8256910
| | Sample_contact_institute | UCLA
| | Sample_contact_address | 615 Charles E young Dr S
| | Sample_contact_city | Los Angeles
| | Sample_contact_zip/postal_code | 90095
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM843nnn/GSM843222/suppl/GSM843222_141995.CEL.gz
| | Sample_series_id | GSE34156
| | Sample_data_row_count | 54675
| | |
|
GSM843223 | GPL570 |
|
Donor 2 sample5
|
NOD2L+ TLR2/1L t6h
|
tissue: healthy human blood
cell type: monocytes
|
141996
|
| Sample_geo_accession | GSM843223
| | Sample_status | Public on Mar 15 2012
| | Sample_submission_date | Dec 05 2011
| | Sample_last_update_date | Mar 15 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Monocytes were activated using the NOD2L (MDP) and/or the TLR2/1L (19kD)
| | Sample_growth_protocol_ch1 | Human monocytes were purified from healthy donors and subsequently cultured in RPMI/ 10% human serum (Vitamin D3 sufficient)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was extracted using trizol method and further purified using RNAeasy mini kit (Qiagen)
| | Sample_label_ch1 | pCp-Biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol by UCLA DNA microarray core facility
| | Sample_hyb_protocol | Standard Affymetrix protocol by UCLA DNA microarray core facility
| | Sample_scan_protocol | Standard Affymetrix protocol by UCLA DNA microarray core facility
| | Sample_data_processing | UCLA DNA microarray core facility, normalized with dCHIP using invariant set normalization method. Data were normalized and present calls used to calculate fold change vs media control.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Mirjam,,Schenk
| | Sample_contact_email | mschenk@mednet.ucla.edu
| | Sample_contact_phone | 310 8256910
| | Sample_contact_institute | UCLA
| | Sample_contact_address | 615 Charles E young Dr S
| | Sample_contact_city | Los Angeles
| | Sample_contact_zip/postal_code | 90095
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM843nnn/GSM843223/suppl/GSM843223_141996.CEL.gz
| | Sample_series_id | GSE34156
| | Sample_data_row_count | 54675
| | |
|
GSM843224 | GPL570 |
|
Donor 2 sample6
|
media t24h
|
tissue: healthy human blood
cell type: monocytes
|
141997
|
| Sample_geo_accession | GSM843224
| | Sample_status | Public on Mar 15 2012
| | Sample_submission_date | Dec 05 2011
| | Sample_last_update_date | Mar 15 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Monocytes were activated using the NOD2L (MDP) and/or the TLR2/1L (19kD)
| | Sample_growth_protocol_ch1 | Human monocytes were purified from healthy donors and subsequently cultured in RPMI/ 10% human serum (Vitamin D3 sufficient)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was extracted using trizol method and further purified using RNAeasy mini kit (Qiagen)
| | Sample_label_ch1 | pCp-Biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol by UCLA DNA microarray core facility
| | Sample_hyb_protocol | Standard Affymetrix protocol by UCLA DNA microarray core facility
| | Sample_scan_protocol | Standard Affymetrix protocol by UCLA DNA microarray core facility
| | Sample_data_processing | UCLA DNA microarray core facility, normalized with dCHIP using invariant set normalization method. Data were normalized and present calls used to calculate fold change vs media control.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Mirjam,,Schenk
| | Sample_contact_email | mschenk@mednet.ucla.edu
| | Sample_contact_phone | 310 8256910
| | Sample_contact_institute | UCLA
| | Sample_contact_address | 615 Charles E young Dr S
| | Sample_contact_city | Los Angeles
| | Sample_contact_zip/postal_code | 90095
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM843nnn/GSM843224/suppl/GSM843224_141997.CEL.gz
| | Sample_series_id | GSE34156
| | Sample_data_row_count | 54675
| | |
|
GSM843225 | GPL570 |
|
Donor 2 sample7
|
NOD2L t24h
|
tissue: healthy human blood
cell type: monocytes
|
141998
|
| Sample_geo_accession | GSM843225
| | Sample_status | Public on Mar 15 2012
| | Sample_submission_date | Dec 05 2011
| | Sample_last_update_date | Mar 15 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Monocytes were activated using the NOD2L (MDP) and/or the TLR2/1L (19kD)
| | Sample_growth_protocol_ch1 | Human monocytes were purified from healthy donors and subsequently cultured in RPMI/ 10% human serum (Vitamin D3 sufficient)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was extracted using trizol method and further purified using RNAeasy mini kit (Qiagen)
| | Sample_label_ch1 | pCp-Biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol by UCLA DNA microarray core facility
| | Sample_hyb_protocol | Standard Affymetrix protocol by UCLA DNA microarray core facility
| | Sample_scan_protocol | Standard Affymetrix protocol by UCLA DNA microarray core facility
| | Sample_data_processing | UCLA DNA microarray core facility, normalized with dCHIP using invariant set normalization method. Data were normalized and present calls used to calculate fold change vs media control.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Mirjam,,Schenk
| | Sample_contact_email | mschenk@mednet.ucla.edu
| | Sample_contact_phone | 310 8256910
| | Sample_contact_institute | UCLA
| | Sample_contact_address | 615 Charles E young Dr S
| | Sample_contact_city | Los Angeles
| | Sample_contact_zip/postal_code | 90095
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM843nnn/GSM843225/suppl/GSM843225_141998.CEL.gz
| | Sample_series_id | GSE34156
| | Sample_data_row_count | 54675
| | |
|
GSM843226 | GPL570 |
|
Donor 2 sample8
|
TLR2/1L t24h
|
tissue: healthy human blood
cell type: monocytes
|
141999
|
| Sample_geo_accession | GSM843226
| | Sample_status | Public on Mar 15 2012
| | Sample_submission_date | Dec 05 2011
| | Sample_last_update_date | Mar 15 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Monocytes were activated using the NOD2L (MDP) and/or the TLR2/1L (19kD)
| | Sample_growth_protocol_ch1 | Human monocytes were purified from healthy donors and subsequently cultured in RPMI/ 10% human serum (Vitamin D3 sufficient)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was extracted using trizol method and further purified using RNAeasy mini kit (Qiagen)
| | Sample_label_ch1 | pCp-Biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol by UCLA DNA microarray core facility
| | Sample_hyb_protocol | Standard Affymetrix protocol by UCLA DNA microarray core facility
| | Sample_scan_protocol | Standard Affymetrix protocol by UCLA DNA microarray core facility
| | Sample_data_processing | UCLA DNA microarray core facility, normalized with dCHIP using invariant set normalization method. Data were normalized and present calls used to calculate fold change vs media control.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Mirjam,,Schenk
| | Sample_contact_email | mschenk@mednet.ucla.edu
| | Sample_contact_phone | 310 8256910
| | Sample_contact_institute | UCLA
| | Sample_contact_address | 615 Charles E young Dr S
| | Sample_contact_city | Los Angeles
| | Sample_contact_zip/postal_code | 90095
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM843nnn/GSM843226/suppl/GSM843226_141999.CEL.gz
| | Sample_series_id | GSE34156
| | Sample_data_row_count | 54675
| | |
|
GSM843227 | GPL570 |
|
Donor 2 sample9
|
NOD2L+ TLR2/1L t24h
|
tissue: healthy human blood
cell type: monocytes
|
142000
|
| Sample_geo_accession | GSM843227
| | Sample_status | Public on Mar 15 2012
| | Sample_submission_date | Dec 05 2011
| | Sample_last_update_date | Mar 15 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Monocytes were activated using the NOD2L (MDP) and/or the TLR2/1L (19kD)
| | Sample_growth_protocol_ch1 | Human monocytes were purified from healthy donors and subsequently cultured in RPMI/ 10% human serum (Vitamin D3 sufficient)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was extracted using trizol method and further purified using RNAeasy mini kit (Qiagen)
| | Sample_label_ch1 | pCp-Biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol by UCLA DNA microarray core facility
| | Sample_hyb_protocol | Standard Affymetrix protocol by UCLA DNA microarray core facility
| | Sample_scan_protocol | Standard Affymetrix protocol by UCLA DNA microarray core facility
| | Sample_data_processing | UCLA DNA microarray core facility, normalized with dCHIP using invariant set normalization method. Data were normalized and present calls used to calculate fold change vs media control.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Mirjam,,Schenk
| | Sample_contact_email | mschenk@mednet.ucla.edu
| | Sample_contact_phone | 310 8256910
| | Sample_contact_institute | UCLA
| | Sample_contact_address | 615 Charles E young Dr S
| | Sample_contact_city | Los Angeles
| | Sample_contact_zip/postal_code | 90095
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM843nnn/GSM843227/suppl/GSM843227_142000.CEL.gz
| | Sample_series_id | GSE34156
| | Sample_data_row_count | 54675
| | |
|
GSM843228 | GPL570 |
|
Donor 3 sample1
|
media t0h
|
tissue: healthy human blood
cell type: monocytes
|
141982
|
| Sample_geo_accession | GSM843228
| | Sample_status | Public on Mar 15 2012
| | Sample_submission_date | Dec 05 2011
| | Sample_last_update_date | Mar 15 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Monocytes were activated using the NOD2L (MDP) and/or the TLR2/1L (19kD)
| | Sample_growth_protocol_ch1 | Human monocytes were purified from healthy donors and subsequently cultured in RPMI/ 10% human serum (Vitamin D3 sufficient)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was extracted using trizol method and further purified using RNAeasy mini kit (Qiagen)
| | Sample_label_ch1 | pCp-Biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol by UCLA DNA microarray core facility
| | Sample_hyb_protocol | Standard Affymetrix protocol by UCLA DNA microarray core facility
| | Sample_scan_protocol | Standard Affymetrix protocol by UCLA DNA microarray core facility
| | Sample_data_processing | UCLA DNA microarray core facility, normalized with dCHIP using invariant set normalization method. Data were normalized and present calls used to calculate fold change vs media control.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Mirjam,,Schenk
| | Sample_contact_email | mschenk@mednet.ucla.edu
| | Sample_contact_phone | 310 8256910
| | Sample_contact_institute | UCLA
| | Sample_contact_address | 615 Charles E young Dr S
| | Sample_contact_city | Los Angeles
| | Sample_contact_zip/postal_code | 90095
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM843nnn/GSM843228/suppl/GSM843228_141982.CEL.gz
| | Sample_series_id | GSE34156
| | Sample_data_row_count | 54675
| | |
|
GSM843229 | GPL570 |
|
Donor 3 sample2
|
media t6h
|
tissue: healthy human blood
cell type: monocytes
|
142001
|
| Sample_geo_accession | GSM843229
| | Sample_status | Public on Mar 15 2012
| | Sample_submission_date | Dec 05 2011
| | Sample_last_update_date | Mar 15 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Monocytes were activated using the NOD2L (MDP) and/or the TLR2/1L (19kD)
| | Sample_growth_protocol_ch1 | Human monocytes were purified from healthy donors and subsequently cultured in RPMI/ 10% human serum (Vitamin D3 sufficient)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was extracted using trizol method and further purified using RNAeasy mini kit (Qiagen)
| | Sample_label_ch1 | pCp-Biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol by UCLA DNA microarray core facility
| | Sample_hyb_protocol | Standard Affymetrix protocol by UCLA DNA microarray core facility
| | Sample_scan_protocol | Standard Affymetrix protocol by UCLA DNA microarray core facility
| | Sample_data_processing | UCLA DNA microarray core facility, normalized with dCHIP using invariant set normalization method. Data were normalized and present calls used to calculate fold change vs media control.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Mirjam,,Schenk
| | Sample_contact_email | mschenk@mednet.ucla.edu
| | Sample_contact_phone | 310 8256910
| | Sample_contact_institute | UCLA
| | Sample_contact_address | 615 Charles E young Dr S
| | Sample_contact_city | Los Angeles
| | Sample_contact_zip/postal_code | 90095
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM843nnn/GSM843229/suppl/GSM843229_142001.CEL.gz
| | Sample_series_id | GSE34156
| | Sample_data_row_count | 54675
| | |
|
GSM843230 | GPL570 |
|
Donor 3 sample3
|
NOD2L t6h
|
tissue: healthy human blood
cell type: monocytes
|
142002
|
| Sample_geo_accession | GSM843230
| | Sample_status | Public on Mar 15 2012
| | Sample_submission_date | Dec 05 2011
| | Sample_last_update_date | Mar 15 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Monocytes were activated using the NOD2L (MDP) and/or the TLR2/1L (19kD)
| | Sample_growth_protocol_ch1 | Human monocytes were purified from healthy donors and subsequently cultured in RPMI/ 10% human serum (Vitamin D3 sufficient)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was extracted using trizol method and further purified using RNAeasy mini kit (Qiagen)
| | Sample_label_ch1 | pCp-Biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol by UCLA DNA microarray core facility
| | Sample_hyb_protocol | Standard Affymetrix protocol by UCLA DNA microarray core facility
| | Sample_scan_protocol | Standard Affymetrix protocol by UCLA DNA microarray core facility
| | Sample_data_processing | UCLA DNA microarray core facility, normalized with dCHIP using invariant set normalization method. Data were normalized and present calls used to calculate fold change vs media control.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Mirjam,,Schenk
| | Sample_contact_email | mschenk@mednet.ucla.edu
| | Sample_contact_phone | 310 8256910
| | Sample_contact_institute | UCLA
| | Sample_contact_address | 615 Charles E young Dr S
| | Sample_contact_city | Los Angeles
| | Sample_contact_zip/postal_code | 90095
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM843nnn/GSM843230/suppl/GSM843230_142002.CEL.gz
| | Sample_series_id | GSE34156
| | Sample_data_row_count | 54675
| | |
|
GSM843231 | GPL570 |
|
Donor 3 sample4
|
TLR2/1L t6h
|
tissue: healthy human blood
cell type: monocytes
|
142003
|
| Sample_geo_accession | GSM843231
| | Sample_status | Public on Mar 15 2012
| | Sample_submission_date | Dec 05 2011
| | Sample_last_update_date | Mar 15 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Monocytes were activated using the NOD2L (MDP) and/or the TLR2/1L (19kD)
| | Sample_growth_protocol_ch1 | Human monocytes were purified from healthy donors and subsequently cultured in RPMI/ 10% human serum (Vitamin D3 sufficient)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was extracted using trizol method and further purified using RNAeasy mini kit (Qiagen)
| | Sample_label_ch1 | pCp-Biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol by UCLA DNA microarray core facility
| | Sample_hyb_protocol | Standard Affymetrix protocol by UCLA DNA microarray core facility
| | Sample_scan_protocol | Standard Affymetrix protocol by UCLA DNA microarray core facility
| | Sample_data_processing | UCLA DNA microarray core facility, normalized with dCHIP using invariant set normalization method. Data were normalized and present calls used to calculate fold change vs media control.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Mirjam,,Schenk
| | Sample_contact_email | mschenk@mednet.ucla.edu
| | Sample_contact_phone | 310 8256910
| | Sample_contact_institute | UCLA
| | Sample_contact_address | 615 Charles E young Dr S
| | Sample_contact_city | Los Angeles
| | Sample_contact_zip/postal_code | 90095
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM843nnn/GSM843231/suppl/GSM843231_142003.CEL.gz
| | Sample_series_id | GSE34156
| | Sample_data_row_count | 54675
| | |
|
GSM843232 | GPL570 |
|
Donor 3 sample5
|
NOD2L+ TLR2/1L t6h
|
tissue: healthy human blood
cell type: monocytes
|
142004
|
| Sample_geo_accession | GSM843232
| | Sample_status | Public on Mar 15 2012
| | Sample_submission_date | Dec 05 2011
| | Sample_last_update_date | Mar 15 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Monocytes were activated using the NOD2L (MDP) and/or the TLR2/1L (19kD)
| | Sample_growth_protocol_ch1 | Human monocytes were purified from healthy donors and subsequently cultured in RPMI/ 10% human serum (Vitamin D3 sufficient)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was extracted using trizol method and further purified using RNAeasy mini kit (Qiagen)
| | Sample_label_ch1 | pCp-Biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol by UCLA DNA microarray core facility
| | Sample_hyb_protocol | Standard Affymetrix protocol by UCLA DNA microarray core facility
| | Sample_scan_protocol | Standard Affymetrix protocol by UCLA DNA microarray core facility
| | Sample_data_processing | UCLA DNA microarray core facility, normalized with dCHIP using invariant set normalization method. Data were normalized and present calls used to calculate fold change vs media control.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Mirjam,,Schenk
| | Sample_contact_email | mschenk@mednet.ucla.edu
| | Sample_contact_phone | 310 8256910
| | Sample_contact_institute | UCLA
| | Sample_contact_address | 615 Charles E young Dr S
| | Sample_contact_city | Los Angeles
| | Sample_contact_zip/postal_code | 90095
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM843nnn/GSM843232/suppl/GSM843232_142004.CEL.gz
| | Sample_series_id | GSE34156
| | Sample_data_row_count | 54675
| | |
|
GSM843233 | GPL570 |
|
Donor 3 sample6
|
media t24h
|
tissue: healthy human blood
cell type: monocytes
|
142005
|
| Sample_geo_accession | GSM843233
| | Sample_status | Public on Mar 15 2012
| | Sample_submission_date | Dec 05 2011
| | Sample_last_update_date | Mar 15 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Monocytes were activated using the NOD2L (MDP) and/or the TLR2/1L (19kD)
| | Sample_growth_protocol_ch1 | Human monocytes were purified from healthy donors and subsequently cultured in RPMI/ 10% human serum (Vitamin D3 sufficient)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was extracted using trizol method and further purified using RNAeasy mini kit (Qiagen)
| | Sample_label_ch1 | pCp-Biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol by UCLA DNA microarray core facility
| | Sample_hyb_protocol | Standard Affymetrix protocol by UCLA DNA microarray core facility
| | Sample_scan_protocol | Standard Affymetrix protocol by UCLA DNA microarray core facility
| | Sample_data_processing | UCLA DNA microarray core facility, normalized with dCHIP using invariant set normalization method. Data were normalized and present calls used to calculate fold change vs media control.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Mirjam,,Schenk
| | Sample_contact_email | mschenk@mednet.ucla.edu
| | Sample_contact_phone | 310 8256910
| | Sample_contact_institute | UCLA
| | Sample_contact_address | 615 Charles E young Dr S
| | Sample_contact_city | Los Angeles
| | Sample_contact_zip/postal_code | 90095
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM843nnn/GSM843233/suppl/GSM843233_142005.CEL.gz
| | Sample_series_id | GSE34156
| | Sample_data_row_count | 54675
| | |
|
GSM843234 | GPL570 |
|
Donor 3 sample7
|
NOD2L t24h
|
tissue: healthy human blood
cell type: monocytes
|
142006
|
| Sample_geo_accession | GSM843234
| | Sample_status | Public on Mar 15 2012
| | Sample_submission_date | Dec 05 2011
| | Sample_last_update_date | Mar 15 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Monocytes were activated using the NOD2L (MDP) and/or the TLR2/1L (19kD)
| | Sample_growth_protocol_ch1 | Human monocytes were purified from healthy donors and subsequently cultured in RPMI/ 10% human serum (Vitamin D3 sufficient)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was extracted using trizol method and further purified using RNAeasy mini kit (Qiagen)
| | Sample_label_ch1 | pCp-Biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol by UCLA DNA microarray core facility
| | Sample_hyb_protocol | Standard Affymetrix protocol by UCLA DNA microarray core facility
| | Sample_scan_protocol | Standard Affymetrix protocol by UCLA DNA microarray core facility
| | Sample_data_processing | UCLA DNA microarray core facility, normalized with dCHIP using invariant set normalization method. Data were normalized and present calls used to calculate fold change vs media control.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Mirjam,,Schenk
| | Sample_contact_email | mschenk@mednet.ucla.edu
| | Sample_contact_phone | 310 8256910
| | Sample_contact_institute | UCLA
| | Sample_contact_address | 615 Charles E young Dr S
| | Sample_contact_city | Los Angeles
| | Sample_contact_zip/postal_code | 90095
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM843nnn/GSM843234/suppl/GSM843234_142006.CEL.gz
| | Sample_series_id | GSE34156
| | Sample_data_row_count | 54675
| | |
|
GSM843235 | GPL570 |
|
Donor 3 sample8
|
TLR2/1L t24h
|
tissue: healthy human blood
cell type: monocytes
|
142007
|
| Sample_geo_accession | GSM843235
| | Sample_status | Public on Mar 15 2012
| | Sample_submission_date | Dec 05 2011
| | Sample_last_update_date | Mar 15 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Monocytes were activated using the NOD2L (MDP) and/or the TLR2/1L (19kD)
| | Sample_growth_protocol_ch1 | Human monocytes were purified from healthy donors and subsequently cultured in RPMI/ 10% human serum (Vitamin D3 sufficient)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was extracted using trizol method and further purified using RNAeasy mini kit (Qiagen)
| | Sample_label_ch1 | pCp-Biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol by UCLA DNA microarray core facility
| | Sample_hyb_protocol | Standard Affymetrix protocol by UCLA DNA microarray core facility
| | Sample_scan_protocol | Standard Affymetrix protocol by UCLA DNA microarray core facility
| | Sample_data_processing | UCLA DNA microarray core facility, normalized with dCHIP using invariant set normalization method. Data were normalized and present calls used to calculate fold change vs media control.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Mirjam,,Schenk
| | Sample_contact_email | mschenk@mednet.ucla.edu
| | Sample_contact_phone | 310 8256910
| | Sample_contact_institute | UCLA
| | Sample_contact_address | 615 Charles E young Dr S
| | Sample_contact_city | Los Angeles
| | Sample_contact_zip/postal_code | 90095
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM843nnn/GSM843235/suppl/GSM843235_142007.CEL.gz
| | Sample_series_id | GSE34156
| | Sample_data_row_count | 54675
| | |
|
GSM843236 | GPL570 |
|
Donor 3 sample9
|
NOD2L+ TLR2/1L t24h
|
tissue: healthy human blood
cell type: monocytes
|
142008
|
| Sample_geo_accession | GSM843236
| | Sample_status | Public on Mar 15 2012
| | Sample_submission_date | Dec 05 2011
| | Sample_last_update_date | Mar 15 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Monocytes were activated using the NOD2L (MDP) and/or the TLR2/1L (19kD)
| | Sample_growth_protocol_ch1 | Human monocytes were purified from healthy donors and subsequently cultured in RPMI/ 10% human serum (Vitamin D3 sufficient)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was extracted using trizol method and further purified using RNAeasy mini kit (Qiagen)
| | Sample_label_ch1 | pCp-Biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol by UCLA DNA microarray core facility
| | Sample_hyb_protocol | Standard Affymetrix protocol by UCLA DNA microarray core facility
| | Sample_scan_protocol | Standard Affymetrix protocol by UCLA DNA microarray core facility
| | Sample_data_processing | UCLA DNA microarray core facility, normalized with dCHIP using invariant set normalization method. Data were normalized and present calls used to calculate fold change vs media control.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Mirjam,,Schenk
| | Sample_contact_email | mschenk@mednet.ucla.edu
| | Sample_contact_phone | 310 8256910
| | Sample_contact_institute | UCLA
| | Sample_contact_address | 615 Charles E young Dr S
| | Sample_contact_city | Los Angeles
| | Sample_contact_zip/postal_code | 90095
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM843nnn/GSM843236/suppl/GSM843236_142008.CEL.gz
| | Sample_series_id | GSE34156
| | Sample_data_row_count | 54675
| | |
|
GSM843237 | GPL570 |
|
Donor 4 sample1
|
media t0h
|
tissue: healthy human blood
cell type: monocytes
|
141983
|
| Sample_geo_accession | GSM843237
| | Sample_status | Public on Mar 15 2012
| | Sample_submission_date | Dec 05 2011
| | Sample_last_update_date | Mar 15 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Monocytes were activated using the NOD2L (MDP) and/or the TLR2/1L (19kD)
| | Sample_growth_protocol_ch1 | Human monocytes were purified from healthy donors and subsequently cultured in RPMI/ 10% human serum (Vitamin D3 sufficient)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was extracted using trizol method and further purified using RNAeasy mini kit (Qiagen)
| | Sample_label_ch1 | pCp-Biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol by UCLA DNA microarray core facility
| | Sample_hyb_protocol | Standard Affymetrix protocol by UCLA DNA microarray core facility
| | Sample_scan_protocol | Standard Affymetrix protocol by UCLA DNA microarray core facility
| | Sample_data_processing | UCLA DNA microarray core facility, normalized with dCHIP using invariant set normalization method. Data were normalized and present calls used to calculate fold change vs media control.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Mirjam,,Schenk
| | Sample_contact_email | mschenk@mednet.ucla.edu
| | Sample_contact_phone | 310 8256910
| | Sample_contact_institute | UCLA
| | Sample_contact_address | 615 Charles E young Dr S
| | Sample_contact_city | Los Angeles
| | Sample_contact_zip/postal_code | 90095
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM843nnn/GSM843237/suppl/GSM843237_141983.CEL.gz
| | Sample_series_id | GSE34156
| | Sample_data_row_count | 54675
| | |
|
GSM843238 | GPL570 |
|
Donor 4 sample2
|
media t6h
|
tissue: healthy human blood
cell type: monocytes
|
142009
|
| Sample_geo_accession | GSM843238
| | Sample_status | Public on Mar 15 2012
| | Sample_submission_date | Dec 05 2011
| | Sample_last_update_date | Mar 15 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Monocytes were activated using the NOD2L (MDP) and/or the TLR2/1L (19kD)
| | Sample_growth_protocol_ch1 | Human monocytes were purified from healthy donors and subsequently cultured in RPMI/ 10% human serum (Vitamin D3 sufficient)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was extracted using trizol method and further purified using RNAeasy mini kit (Qiagen)
| | Sample_label_ch1 | pCp-Biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol by UCLA DNA microarray core facility
| | Sample_hyb_protocol | Standard Affymetrix protocol by UCLA DNA microarray core facility
| | Sample_scan_protocol | Standard Affymetrix protocol by UCLA DNA microarray core facility
| | Sample_data_processing | UCLA DNA microarray core facility, normalized with dCHIP using invariant set normalization method. Data were normalized and present calls used to calculate fold change vs media control.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Mirjam,,Schenk
| | Sample_contact_email | mschenk@mednet.ucla.edu
| | Sample_contact_phone | 310 8256910
| | Sample_contact_institute | UCLA
| | Sample_contact_address | 615 Charles E young Dr S
| | Sample_contact_city | Los Angeles
| | Sample_contact_zip/postal_code | 90095
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM843nnn/GSM843238/suppl/GSM843238_142009.CEL.gz
| | Sample_series_id | GSE34156
| | Sample_data_row_count | 54675
| | |
|
GSM843239 | GPL570 |
|
Donor 4 sample3
|
NOD2L t6h
|
tissue: healthy human blood
cell type: monocytes
|
142010
|
| Sample_geo_accession | GSM843239
| | Sample_status | Public on Mar 15 2012
| | Sample_submission_date | Dec 05 2011
| | Sample_last_update_date | Mar 15 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Monocytes were activated using the NOD2L (MDP) and/or the TLR2/1L (19kD)
| | Sample_growth_protocol_ch1 | Human monocytes were purified from healthy donors and subsequently cultured in RPMI/ 10% human serum (Vitamin D3 sufficient)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was extracted using trizol method and further purified using RNAeasy mini kit (Qiagen)
| | Sample_label_ch1 | pCp-Biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol by UCLA DNA microarray core facility
| | Sample_hyb_protocol | Standard Affymetrix protocol by UCLA DNA microarray core facility
| | Sample_scan_protocol | Standard Affymetrix protocol by UCLA DNA microarray core facility
| | Sample_data_processing | UCLA DNA microarray core facility, normalized with dCHIP using invariant set normalization method. Data were normalized and present calls used to calculate fold change vs media control.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Mirjam,,Schenk
| | Sample_contact_email | mschenk@mednet.ucla.edu
| | Sample_contact_phone | 310 8256910
| | Sample_contact_institute | UCLA
| | Sample_contact_address | 615 Charles E young Dr S
| | Sample_contact_city | Los Angeles
| | Sample_contact_zip/postal_code | 90095
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM843nnn/GSM843239/suppl/GSM843239_142010.CEL.gz
| | Sample_series_id | GSE34156
| | Sample_data_row_count | 54675
| | |
|
GSM843240 | GPL570 |
|
Donor 4 sample4
|
TLR2/1L t6h
|
tissue: healthy human blood
cell type: monocytes
|
142011
|
| Sample_geo_accession | GSM843240
| | Sample_status | Public on Mar 15 2012
| | Sample_submission_date | Dec 05 2011
| | Sample_last_update_date | Mar 15 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Monocytes were activated using the NOD2L (MDP) and/or the TLR2/1L (19kD)
| | Sample_growth_protocol_ch1 | Human monocytes were purified from healthy donors and subsequently cultured in RPMI/ 10% human serum (Vitamin D3 sufficient)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was extracted using trizol method and further purified using RNAeasy mini kit (Qiagen)
| | Sample_label_ch1 | pCp-Biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol by UCLA DNA microarray core facility
| | Sample_hyb_protocol | Standard Affymetrix protocol by UCLA DNA microarray core facility
| | Sample_scan_protocol | Standard Affymetrix protocol by UCLA DNA microarray core facility
| | Sample_data_processing | UCLA DNA microarray core facility, normalized with dCHIP using invariant set normalization method. Data were normalized and present calls used to calculate fold change vs media control.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Mirjam,,Schenk
| | Sample_contact_email | mschenk@mednet.ucla.edu
| | Sample_contact_phone | 310 8256910
| | Sample_contact_institute | UCLA
| | Sample_contact_address | 615 Charles E young Dr S
| | Sample_contact_city | Los Angeles
| | Sample_contact_zip/postal_code | 90095
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM843nnn/GSM843240/suppl/GSM843240_142011.CEL.gz
| | Sample_series_id | GSE34156
| | Sample_data_row_count | 54675
| | |
|
GSM843241 | GPL570 |
|
Donor 4 sample5
|
NOD2L+ TLR2/1L t6h
|
tissue: healthy human blood
cell type: monocytes
|
142012
|
| Sample_geo_accession | GSM843241
| | Sample_status | Public on Mar 15 2012
| | Sample_submission_date | Dec 05 2011
| | Sample_last_update_date | Mar 15 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Monocytes were activated using the NOD2L (MDP) and/or the TLR2/1L (19kD)
| | Sample_growth_protocol_ch1 | Human monocytes were purified from healthy donors and subsequently cultured in RPMI/ 10% human serum (Vitamin D3 sufficient)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was extracted using trizol method and further purified using RNAeasy mini kit (Qiagen)
| | Sample_label_ch1 | pCp-Biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol by UCLA DNA microarray core facility
| | Sample_hyb_protocol | Standard Affymetrix protocol by UCLA DNA microarray core facility
| | Sample_scan_protocol | Standard Affymetrix protocol by UCLA DNA microarray core facility
| | Sample_data_processing | UCLA DNA microarray core facility, normalized with dCHIP using invariant set normalization method. Data were normalized and present calls used to calculate fold change vs media control.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Mirjam,,Schenk
| | Sample_contact_email | mschenk@mednet.ucla.edu
| | Sample_contact_phone | 310 8256910
| | Sample_contact_institute | UCLA
| | Sample_contact_address | 615 Charles E young Dr S
| | Sample_contact_city | Los Angeles
| | Sample_contact_zip/postal_code | 90095
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM843nnn/GSM843241/suppl/GSM843241_142012.CEL.gz
| | Sample_series_id | GSE34156
| | Sample_data_row_count | 54675
| | |
|
GSM843242 | GPL570 |
|
Donor 4 sample6
|
media t24h
|
tissue: healthy human blood
cell type: monocytes
|
142013
|
| Sample_geo_accession | GSM843242
| | Sample_status | Public on Mar 15 2012
| | Sample_submission_date | Dec 05 2011
| | Sample_last_update_date | Mar 15 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Monocytes were activated using the NOD2L (MDP) and/or the TLR2/1L (19kD)
| | Sample_growth_protocol_ch1 | Human monocytes were purified from healthy donors and subsequently cultured in RPMI/ 10% human serum (Vitamin D3 sufficient)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was extracted using trizol method and further purified using RNAeasy mini kit (Qiagen)
| | Sample_label_ch1 | pCp-Biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol by UCLA DNA microarray core facility
| | Sample_hyb_protocol | Standard Affymetrix protocol by UCLA DNA microarray core facility
| | Sample_scan_protocol | Standard Affymetrix protocol by UCLA DNA microarray core facility
| | Sample_data_processing | UCLA DNA microarray core facility, normalized with dCHIP using invariant set normalization method. Data were normalized and present calls used to calculate fold change vs media control.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Mirjam,,Schenk
| | Sample_contact_email | mschenk@mednet.ucla.edu
| | Sample_contact_phone | 310 8256910
| | Sample_contact_institute | UCLA
| | Sample_contact_address | 615 Charles E young Dr S
| | Sample_contact_city | Los Angeles
| | Sample_contact_zip/postal_code | 90095
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM843nnn/GSM843242/suppl/GSM843242_142013.CEL.gz
| | Sample_series_id | GSE34156
| | Sample_data_row_count | 54675
| | |
|
GSM843243 | GPL570 |
|
Donor 4 sample7
|
NOD2L t24h
|
tissue: healthy human blood
cell type: monocytes
|
142014
|
| Sample_geo_accession | GSM843243
| | Sample_status | Public on Mar 15 2012
| | Sample_submission_date | Dec 05 2011
| | Sample_last_update_date | Mar 15 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Monocytes were activated using the NOD2L (MDP) and/or the TLR2/1L (19kD)
| | Sample_growth_protocol_ch1 | Human monocytes were purified from healthy donors and subsequently cultured in RPMI/ 10% human serum (Vitamin D3 sufficient)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was extracted using trizol method and further purified using RNAeasy mini kit (Qiagen)
| | Sample_label_ch1 | pCp-Biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol by UCLA DNA microarray core facility
| | Sample_hyb_protocol | Standard Affymetrix protocol by UCLA DNA microarray core facility
| | Sample_scan_protocol | Standard Affymetrix protocol by UCLA DNA microarray core facility
| | Sample_data_processing | UCLA DNA microarray core facility, normalized with dCHIP using invariant set normalization method. Data were normalized and present calls used to calculate fold change vs media control.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Mirjam,,Schenk
| | Sample_contact_email | mschenk@mednet.ucla.edu
| | Sample_contact_phone | 310 8256910
| | Sample_contact_institute | UCLA
| | Sample_contact_address | 615 Charles E young Dr S
| | Sample_contact_city | Los Angeles
| | Sample_contact_zip/postal_code | 90095
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM843nnn/GSM843243/suppl/GSM843243_142014.CEL.gz
| | Sample_series_id | GSE34156
| | Sample_data_row_count | 54675
| | |
|
GSM843244 | GPL570 |
|
Donor 4 sample8
|
TLR2/1L t24h
|
tissue: healthy human blood
cell type: monocytes
|
142015
|
| Sample_geo_accession | GSM843244
| | Sample_status | Public on Mar 15 2012
| | Sample_submission_date | Dec 05 2011
| | Sample_last_update_date | Mar 15 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Monocytes were activated using the NOD2L (MDP) and/or the TLR2/1L (19kD)
| | Sample_growth_protocol_ch1 | Human monocytes were purified from healthy donors and subsequently cultured in RPMI/ 10% human serum (Vitamin D3 sufficient)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was extracted using trizol method and further purified using RNAeasy mini kit (Qiagen)
| | Sample_label_ch1 | pCp-Biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol by UCLA DNA microarray core facility
| | Sample_hyb_protocol | Standard Affymetrix protocol by UCLA DNA microarray core facility
| | Sample_scan_protocol | Standard Affymetrix protocol by UCLA DNA microarray core facility
| | Sample_data_processing | UCLA DNA microarray core facility, normalized with dCHIP using invariant set normalization method. Data were normalized and present calls used to calculate fold change vs media control.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Mirjam,,Schenk
| | Sample_contact_email | mschenk@mednet.ucla.edu
| | Sample_contact_phone | 310 8256910
| | Sample_contact_institute | UCLA
| | Sample_contact_address | 615 Charles E young Dr S
| | Sample_contact_city | Los Angeles
| | Sample_contact_zip/postal_code | 90095
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM843nnn/GSM843244/suppl/GSM843244_142015.CEL.gz
| | Sample_series_id | GSE34156
| | Sample_data_row_count | 54675
| | |
|
GSM843245 | GPL570 |
|
Donor 4 sample9
|
NOD2L+ TLR2/1L t24h
|
tissue: healthy human blood
cell type: monocytes
|
142016
|
| Sample_geo_accession | GSM843245
| | Sample_status | Public on Mar 15 2012
| | Sample_submission_date | Dec 05 2011
| | Sample_last_update_date | Mar 15 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Monocytes were activated using the NOD2L (MDP) and/or the TLR2/1L (19kD)
| | Sample_growth_protocol_ch1 | Human monocytes were purified from healthy donors and subsequently cultured in RPMI/ 10% human serum (Vitamin D3 sufficient)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was extracted using trizol method and further purified using RNAeasy mini kit (Qiagen)
| | Sample_label_ch1 | pCp-Biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol by UCLA DNA microarray core facility
| | Sample_hyb_protocol | Standard Affymetrix protocol by UCLA DNA microarray core facility
| | Sample_scan_protocol | Standard Affymetrix protocol by UCLA DNA microarray core facility
| | Sample_data_processing | UCLA DNA microarray core facility, normalized with dCHIP using invariant set normalization method. Data were normalized and present calls used to calculate fold change vs media control.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Mirjam,,Schenk
| | Sample_contact_email | mschenk@mednet.ucla.edu
| | Sample_contact_phone | 310 8256910
| | Sample_contact_institute | UCLA
| | Sample_contact_address | 615 Charles E young Dr S
| | Sample_contact_city | Los Angeles
| | Sample_contact_zip/postal_code | 90095
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM843nnn/GSM843245/suppl/GSM843245_142016.CEL.gz
| | Sample_series_id | GSE34156
| | Sample_data_row_count | 54675
| | |
|
GSM843246 | GPL570 |
|
Donor 5 sample1
|
media t0h
|
tissue: healthy human blood
cell type: monocytes
|
141984
|
| Sample_geo_accession | GSM843246
| | Sample_status | Public on Mar 15 2012
| | Sample_submission_date | Dec 05 2011
| | Sample_last_update_date | Mar 15 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Monocytes were activated using the NOD2L (MDP) and/or the TLR2/1L (19kD)
| | Sample_growth_protocol_ch1 | Human monocytes were purified from healthy donors and subsequently cultured in RPMI/ 10% human serum (Vitamin D3 sufficient)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was extracted using trizol method and further purified using RNAeasy mini kit (Qiagen)
| | Sample_label_ch1 | pCp-Biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol by UCLA DNA microarray core facility
| | Sample_hyb_protocol | Standard Affymetrix protocol by UCLA DNA microarray core facility
| | Sample_scan_protocol | Standard Affymetrix protocol by UCLA DNA microarray core facility
| | Sample_data_processing | UCLA DNA microarray core facility, normalized with dCHIP using invariant set normalization method. Data were normalized and present calls used to calculate fold change vs media control.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Mirjam,,Schenk
| | Sample_contact_email | mschenk@mednet.ucla.edu
| | Sample_contact_phone | 310 8256910
| | Sample_contact_institute | UCLA
| | Sample_contact_address | 615 Charles E young Dr S
| | Sample_contact_city | Los Angeles
| | Sample_contact_zip/postal_code | 90095
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM843nnn/GSM843246/suppl/GSM843246_141984.CEL.gz
| | Sample_series_id | GSE34156
| | Sample_data_row_count | 54675
| | |
|
GSM843247 | GPL570 |
|
Donor 5 sample2
|
media t6h
|
tissue: healthy human blood
cell type: monocytes
|
142017
|
| Sample_geo_accession | GSM843247
| | Sample_status | Public on Mar 15 2012
| | Sample_submission_date | Dec 05 2011
| | Sample_last_update_date | Mar 15 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Monocytes were activated using the NOD2L (MDP) and/or the TLR2/1L (19kD)
| | Sample_growth_protocol_ch1 | Human monocytes were purified from healthy donors and subsequently cultured in RPMI/ 10% human serum (Vitamin D3 sufficient)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was extracted using trizol method and further purified using RNAeasy mini kit (Qiagen)
| | Sample_label_ch1 | pCp-Biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol by UCLA DNA microarray core facility
| | Sample_hyb_protocol | Standard Affymetrix protocol by UCLA DNA microarray core facility
| | Sample_scan_protocol | Standard Affymetrix protocol by UCLA DNA microarray core facility
| | Sample_data_processing | UCLA DNA microarray core facility, normalized with dCHIP using invariant set normalization method. Data were normalized and present calls used to calculate fold change vs media control.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Mirjam,,Schenk
| | Sample_contact_email | mschenk@mednet.ucla.edu
| | Sample_contact_phone | 310 8256910
| | Sample_contact_institute | UCLA
| | Sample_contact_address | 615 Charles E young Dr S
| | Sample_contact_city | Los Angeles
| | Sample_contact_zip/postal_code | 90095
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM843nnn/GSM843247/suppl/GSM843247_142017.CEL.gz
| | Sample_series_id | GSE34156
| | Sample_data_row_count | 54675
| | |
|
GSM843248 | GPL570 |
|
Donor 5 sample3
|
NOD2L t6h
|
tissue: healthy human blood
cell type: monocytes
|
142018
|
| Sample_geo_accession | GSM843248
| | Sample_status | Public on Mar 15 2012
| | Sample_submission_date | Dec 05 2011
| | Sample_last_update_date | Mar 15 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Monocytes were activated using the NOD2L (MDP) and/or the TLR2/1L (19kD)
| | Sample_growth_protocol_ch1 | Human monocytes were purified from healthy donors and subsequently cultured in RPMI/ 10% human serum (Vitamin D3 sufficient)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was extracted using trizol method and further purified using RNAeasy mini kit (Qiagen)
| | Sample_label_ch1 | pCp-Biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol by UCLA DNA microarray core facility
| | Sample_hyb_protocol | Standard Affymetrix protocol by UCLA DNA microarray core facility
| | Sample_scan_protocol | Standard Affymetrix protocol by UCLA DNA microarray core facility
| | Sample_data_processing | UCLA DNA microarray core facility, normalized with dCHIP using invariant set normalization method. Data were normalized and present calls used to calculate fold change vs media control.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Mirjam,,Schenk
| | Sample_contact_email | mschenk@mednet.ucla.edu
| | Sample_contact_phone | 310 8256910
| | Sample_contact_institute | UCLA
| | Sample_contact_address | 615 Charles E young Dr S
| | Sample_contact_city | Los Angeles
| | Sample_contact_zip/postal_code | 90095
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM843nnn/GSM843248/suppl/GSM843248_142018.CEL.gz
| | Sample_series_id | GSE34156
| | Sample_data_row_count | 54675
| | |
|
GSM843249 | GPL570 |
|
Donor 5 sample4
|
TLR2/1L t6h
|
tissue: healthy human blood
cell type: monocytes
|
142019
|
| Sample_geo_accession | GSM843249
| | Sample_status | Public on Mar 15 2012
| | Sample_submission_date | Dec 05 2011
| | Sample_last_update_date | Mar 15 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Monocytes were activated using the NOD2L (MDP) and/or the TLR2/1L (19kD)
| | Sample_growth_protocol_ch1 | Human monocytes were purified from healthy donors and subsequently cultured in RPMI/ 10% human serum (Vitamin D3 sufficient)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was extracted using trizol method and further purified using RNAeasy mini kit (Qiagen)
| | Sample_label_ch1 | pCp-Biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol by UCLA DNA microarray core facility
| | Sample_hyb_protocol | Standard Affymetrix protocol by UCLA DNA microarray core facility
| | Sample_scan_protocol | Standard Affymetrix protocol by UCLA DNA microarray core facility
| | Sample_data_processing | UCLA DNA microarray core facility, normalized with dCHIP using invariant set normalization method. Data were normalized and present calls used to calculate fold change vs media control.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Mirjam,,Schenk
| | Sample_contact_email | mschenk@mednet.ucla.edu
| | Sample_contact_phone | 310 8256910
| | Sample_contact_institute | UCLA
| | Sample_contact_address | 615 Charles E young Dr S
| | Sample_contact_city | Los Angeles
| | Sample_contact_zip/postal_code | 90095
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM843nnn/GSM843249/suppl/GSM843249_142019.CEL.gz
| | Sample_series_id | GSE34156
| | Sample_data_row_count | 54675
| | |
|
GSM843250 | GPL570 |
|
Donor 5 sample5
|
NOD2L+ TLR2/1L t6h
|
tissue: healthy human blood
cell type: monocytes
|
142020
|
| Sample_geo_accession | GSM843250
| | Sample_status | Public on Mar 15 2012
| | Sample_submission_date | Dec 05 2011
| | Sample_last_update_date | Mar 15 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Monocytes were activated using the NOD2L (MDP) and/or the TLR2/1L (19kD)
| | Sample_growth_protocol_ch1 | Human monocytes were purified from healthy donors and subsequently cultured in RPMI/ 10% human serum (Vitamin D3 sufficient)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was extracted using trizol method and further purified using RNAeasy mini kit (Qiagen)
| | Sample_label_ch1 | pCp-Biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol by UCLA DNA microarray core facility
| | Sample_hyb_protocol | Standard Affymetrix protocol by UCLA DNA microarray core facility
| | Sample_scan_protocol | Standard Affymetrix protocol by UCLA DNA microarray core facility
| | Sample_data_processing | UCLA DNA microarray core facility, normalized with dCHIP using invariant set normalization method. Data were normalized and present calls used to calculate fold change vs media control.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Mirjam,,Schenk
| | Sample_contact_email | mschenk@mednet.ucla.edu
| | Sample_contact_phone | 310 8256910
| | Sample_contact_institute | UCLA
| | Sample_contact_address | 615 Charles E young Dr S
| | Sample_contact_city | Los Angeles
| | Sample_contact_zip/postal_code | 90095
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM843nnn/GSM843250/suppl/GSM843250_142020.CEL.gz
| | Sample_series_id | GSE34156
| | Sample_data_row_count | 54675
| | |
|
GSM843251 | GPL570 |
|
Donor 5 sample6
|
media t24h
|
tissue: healthy human blood
cell type: monocytes
|
142021
|
| Sample_geo_accession | GSM843251
| | Sample_status | Public on Mar 15 2012
| | Sample_submission_date | Dec 05 2011
| | Sample_last_update_date | Mar 15 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Monocytes were activated using the NOD2L (MDP) and/or the TLR2/1L (19kD)
| | Sample_growth_protocol_ch1 | Human monocytes were purified from healthy donors and subsequently cultured in RPMI/ 10% human serum (Vitamin D3 sufficient)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was extracted using trizol method and further purified using RNAeasy mini kit (Qiagen)
| | Sample_label_ch1 | pCp-Biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol by UCLA DNA microarray core facility
| | Sample_hyb_protocol | Standard Affymetrix protocol by UCLA DNA microarray core facility
| | Sample_scan_protocol | Standard Affymetrix protocol by UCLA DNA microarray core facility
| | Sample_data_processing | UCLA DNA microarray core facility, normalized with dCHIP using invariant set normalization method. Data were normalized and present calls used to calculate fold change vs media control.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Mirjam,,Schenk
| | Sample_contact_email | mschenk@mednet.ucla.edu
| | Sample_contact_phone | 310 8256910
| | Sample_contact_institute | UCLA
| | Sample_contact_address | 615 Charles E young Dr S
| | Sample_contact_city | Los Angeles
| | Sample_contact_zip/postal_code | 90095
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM843nnn/GSM843251/suppl/GSM843251_142021.CEL.gz
| | Sample_series_id | GSE34156
| | Sample_data_row_count | 54675
| | |
|
GSM843252 | GPL570 |
|
Donor 5 sample7
|
NOD2L t24h
|
tissue: healthy human blood
cell type: monocytes
|
142022
|
| Sample_geo_accession | GSM843252
| | Sample_status | Public on Mar 15 2012
| | Sample_submission_date | Dec 05 2011
| | Sample_last_update_date | Mar 15 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Monocytes were activated using the NOD2L (MDP) and/or the TLR2/1L (19kD)
| | Sample_growth_protocol_ch1 | Human monocytes were purified from healthy donors and subsequently cultured in RPMI/ 10% human serum (Vitamin D3 sufficient)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was extracted using trizol method and further purified using RNAeasy mini kit (Qiagen)
| | Sample_label_ch1 | pCp-Biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol by UCLA DNA microarray core facility
| | Sample_hyb_protocol | Standard Affymetrix protocol by UCLA DNA microarray core facility
| | Sample_scan_protocol | Standard Affymetrix protocol by UCLA DNA microarray core facility
| | Sample_data_processing | UCLA DNA microarray core facility, normalized with dCHIP using invariant set normalization method. Data were normalized and present calls used to calculate fold change vs media control.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Mirjam,,Schenk
| | Sample_contact_email | mschenk@mednet.ucla.edu
| | Sample_contact_phone | 310 8256910
| | Sample_contact_institute | UCLA
| | Sample_contact_address | 615 Charles E young Dr S
| | Sample_contact_city | Los Angeles
| | Sample_contact_zip/postal_code | 90095
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM843nnn/GSM843252/suppl/GSM843252_142022.CEL.gz
| | Sample_series_id | GSE34156
| | Sample_data_row_count | 54675
| | |
|
GSM843253 | GPL570 |
|
Donor 5 sample8
|
TLR2/1L t24h
|
tissue: healthy human blood
cell type: monocytes
|
142023
|
| Sample_geo_accession | GSM843253
| | Sample_status | Public on Mar 15 2012
| | Sample_submission_date | Dec 05 2011
| | Sample_last_update_date | Mar 15 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Monocytes were activated using the NOD2L (MDP) and/or the TLR2/1L (19kD)
| | Sample_growth_protocol_ch1 | Human monocytes were purified from healthy donors and subsequently cultured in RPMI/ 10% human serum (Vitamin D3 sufficient)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was extracted using trizol method and further purified using RNAeasy mini kit (Qiagen)
| | Sample_label_ch1 | pCp-Biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol by UCLA DNA microarray core facility
| | Sample_hyb_protocol | Standard Affymetrix protocol by UCLA DNA microarray core facility
| | Sample_scan_protocol | Standard Affymetrix protocol by UCLA DNA microarray core facility
| | Sample_data_processing | UCLA DNA microarray core facility, normalized with dCHIP using invariant set normalization method. Data were normalized and present calls used to calculate fold change vs media control.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Mirjam,,Schenk
| | Sample_contact_email | mschenk@mednet.ucla.edu
| | Sample_contact_phone | 310 8256910
| | Sample_contact_institute | UCLA
| | Sample_contact_address | 615 Charles E young Dr S
| | Sample_contact_city | Los Angeles
| | Sample_contact_zip/postal_code | 90095
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM843nnn/GSM843253/suppl/GSM843253_142023.CEL.gz
| | Sample_series_id | GSE34156
| | Sample_data_row_count | 54675
| | |
|
GSM843254 | GPL570 |
|
Donor 5 sample9
|
NOD2L+ TLR2/1L t24h
|
tissue: healthy human blood
cell type: monocytes
|
142024
|
| Sample_geo_accession | GSM843254
| | Sample_status | Public on Mar 15 2012
| | Sample_submission_date | Dec 05 2011
| | Sample_last_update_date | Mar 15 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Monocytes were activated using the NOD2L (MDP) and/or the TLR2/1L (19kD)
| | Sample_growth_protocol_ch1 | Human monocytes were purified from healthy donors and subsequently cultured in RPMI/ 10% human serum (Vitamin D3 sufficient)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was extracted using trizol method and further purified using RNAeasy mini kit (Qiagen)
| | Sample_label_ch1 | pCp-Biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol by UCLA DNA microarray core facility
| | Sample_hyb_protocol | Standard Affymetrix protocol by UCLA DNA microarray core facility
| | Sample_scan_protocol | Standard Affymetrix protocol by UCLA DNA microarray core facility
| | Sample_data_processing | UCLA DNA microarray core facility, normalized with dCHIP using invariant set normalization method. Data were normalized and present calls used to calculate fold change vs media control.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Mirjam,,Schenk
| | Sample_contact_email | mschenk@mednet.ucla.edu
| | Sample_contact_phone | 310 8256910
| | Sample_contact_institute | UCLA
| | Sample_contact_address | 615 Charles E young Dr S
| | Sample_contact_city | Los Angeles
| | Sample_contact_zip/postal_code | 90095
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM843nnn/GSM843254/suppl/GSM843254_142024.CEL.gz
| | Sample_series_id | GSE34156
| | Sample_data_row_count | 54675
| | |
|
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Make groups for comparisons |
(2 groups will be compared at a time) |
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| Select GSMs and click on "Add groups" |
Enter the group name here: |
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