Search results for the GEO ID: GSE34189  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM843708 | GPL1261 |
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111 L1 PBS rep1
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lumbar cord of PBS model
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strain: SCID mouse
gender: male
age: 15 weeks old
tissue: lumbar cord
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Gene expression data from lumbar cord of PBS model
|
| Sample_geo_accession | GSM843708
| | Sample_status | Public on Dec 07 2011
| | Sample_submission_date | Dec 06 2011
| | Sample_last_update_date | Dec 07 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_growth_protocol_ch1 | Male severe combined immunodeficiency (SCID) mice (Clea Japan, Tokyo, 9 weeks old) were housed in a light- and temperature-controlled room and fed standard food ad libitum (irradiated CMF; Oriental Yeast, Tokyo, Japan).
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The specimens were dissolved in TRIzol reagent, were homogenized using a Multi-beads shocker (Yasui Kikai), and total RNA was extracted according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Target cRNA was generated from 100 ng total RNA from each sample using Two-Cycle Target Labeling and Control Reagents (Affymetrix).
| | Sample_hyb_protocol | The procedures for target hybridization, washing, and staining with signal amplification were conducted according to the supplier’s protocols (http://www.affymetrix.com/support/technical/manual/expression_manual.affx).
| | Sample_scan_protocol | The arrays were scanned with a GeneChip Scanner 3000 (Affymetrix).
| | Sample_data_processing | The intensity of each feature of the array was calculated using GeneChip Operating Software v1.1.1 (Affymetrix). The mean intensity was standardized to the target intensity, which was set to 1,000, to reliably compare variable multiple arrays.
| | Sample_data_processing | The values were log transformed and median centered. GeneSpring (Agilent Technologies, Inc., Santa Clara, CA, http://www.agilent.com) and Excel (Microsoft, Redmond, WA, http://www.microsoft.com) were used for gene selection.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Akira,,Imoto
| | Sample_contact_email | akiraimoto@hotmail.co.jp
| | Sample_contact_institute | Osaka Medical College
| | Sample_contact_address | Daigakumachi2-7
| | Sample_contact_city | Takatsuki
| | Sample_contact_state | Osaka
| | Sample_contact_zip/postal_code | 569-1124
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM843nnn/GSM843708/suppl/GSM843708.CEL.gz
| | Sample_series_id | GSE34189
| | Sample_data_row_count | 45101
| | |
|
GSM843709 | GPL1261 |
|
112 L1 PBS rep2
|
lumbar cord of PBS model
|
strain: SCID mouse
gender: male
age: 15 weeks old
tissue: lumbar cord
|
Gene expression data from lumbar cord of PBS model
|
| Sample_geo_accession | GSM843709
| | Sample_status | Public on Dec 07 2011
| | Sample_submission_date | Dec 06 2011
| | Sample_last_update_date | Dec 07 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_growth_protocol_ch1 | Male severe combined immunodeficiency (SCID) mice (Clea Japan, Tokyo, 9 weeks old) were housed in a light- and temperature-controlled room and fed standard food ad libitum (irradiated CMF; Oriental Yeast, Tokyo, Japan).
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The specimens were dissolved in TRIzol reagent, were homogenized using a Multi-beads shocker (Yasui Kikai), and total RNA was extracted according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Target cRNA was generated from 100 ng total RNA from each sample using Two-Cycle Target Labeling and Control Reagents (Affymetrix).
| | Sample_hyb_protocol | The procedures for target hybridization, washing, and staining with signal amplification were conducted according to the supplier’s protocols (http://www.affymetrix.com/support/technical/manual/expression_manual.affx).
| | Sample_scan_protocol | The arrays were scanned with a GeneChip Scanner 3000 (Affymetrix).
| | Sample_data_processing | The intensity of each feature of the array was calculated using GeneChip Operating Software v1.1.1 (Affymetrix). The mean intensity was standardized to the target intensity, which was set to 1,000, to reliably compare variable multiple arrays.
| | Sample_data_processing | The values were log transformed and median centered. GeneSpring (Agilent Technologies, Inc., Santa Clara, CA, http://www.agilent.com) and Excel (Microsoft, Redmond, WA, http://www.microsoft.com) were used for gene selection.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Akira,,Imoto
| | Sample_contact_email | akiraimoto@hotmail.co.jp
| | Sample_contact_institute | Osaka Medical College
| | Sample_contact_address | Daigakumachi2-7
| | Sample_contact_city | Takatsuki
| | Sample_contact_state | Osaka
| | Sample_contact_zip/postal_code | 569-1124
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM843nnn/GSM843709/suppl/GSM843709.CEL.gz
| | Sample_series_id | GSE34189
| | Sample_data_row_count | 45101
| | |
|
GSM843710 | GPL1261 |
|
119 L1 N-inv rep1
|
lumbar cord of N-inv model
|
strain: SCID mouse
gender: male
age: 15 weeks old
tissue: lumbar cord
|
Gene expression data from lumbar cord of N-inv model
|
| Sample_geo_accession | GSM843710
| | Sample_status | Public on Dec 07 2011
| | Sample_submission_date | Dec 06 2011
| | Sample_last_update_date | Dec 07 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_growth_protocol_ch1 | Male severe combined immunodeficiency (SCID) mice (Clea Japan, Tokyo, 9 weeks old) were housed in a light- and temperature-controlled room and fed standard food ad libitum (irradiated CMF; Oriental Yeast, Tokyo, Japan).
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The specimens were dissolved in TRIzol reagent, were homogenized using a Multi-beads shocker (Yasui Kikai), and total RNA was extracted according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Target cRNA was generated from 100 ng total RNA from each sample using Two-Cycle Target Labeling and Control Reagents (Affymetrix).
| | Sample_hyb_protocol | The procedures for target hybridization, washing, and staining with signal amplification were conducted according to the supplier’s protocols (http://www.affymetrix.com/support/technical/manual/expression_manual.affx).
| | Sample_scan_protocol | The arrays were scanned with a GeneChip Scanner 3000 (Affymetrix).
| | Sample_data_processing | The intensity of each feature of the array was calculated using GeneChip Operating Software v1.1.1 (Affymetrix). The mean intensity was standardized to the target intensity, which was set to 1,000, to reliably compare variable multiple arrays.
| | Sample_data_processing | The values were log transformed and median centered. GeneSpring (Agilent Technologies, Inc., Santa Clara, CA, http://www.agilent.com) and Excel (Microsoft, Redmond, WA, http://www.microsoft.com) were used for gene selection.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Akira,,Imoto
| | Sample_contact_email | akiraimoto@hotmail.co.jp
| | Sample_contact_institute | Osaka Medical College
| | Sample_contact_address | Daigakumachi2-7
| | Sample_contact_city | Takatsuki
| | Sample_contact_state | Osaka
| | Sample_contact_zip/postal_code | 569-1124
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM843nnn/GSM843710/suppl/GSM843710.CEL.gz
| | Sample_series_id | GSE34189
| | Sample_data_row_count | 45101
| | |
|
GSM843711 | GPL1261 |
|
123 L1 N-inv rep2
|
lumbar cord of N-inv model
|
strain: SCID mouse
gender: male
age: 15 weeks old
tissue: lumbar cord
|
Gene expression data from lumbar cord of N-inv model
|
| Sample_geo_accession | GSM843711
| | Sample_status | Public on Dec 07 2011
| | Sample_submission_date | Dec 06 2011
| | Sample_last_update_date | Dec 07 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_growth_protocol_ch1 | Male severe combined immunodeficiency (SCID) mice (Clea Japan, Tokyo, 9 weeks old) were housed in a light- and temperature-controlled room and fed standard food ad libitum (irradiated CMF; Oriental Yeast, Tokyo, Japan).
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The specimens were dissolved in TRIzol reagent, were homogenized using a Multi-beads shocker (Yasui Kikai), and total RNA was extracted according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Target cRNA was generated from 100 ng total RNA from each sample using Two-Cycle Target Labeling and Control Reagents (Affymetrix).
| | Sample_hyb_protocol | The procedures for target hybridization, washing, and staining with signal amplification were conducted according to the supplier’s protocols (http://www.affymetrix.com/support/technical/manual/expression_manual.affx).
| | Sample_scan_protocol | The arrays were scanned with a GeneChip Scanner 3000 (Affymetrix).
| | Sample_data_processing | The intensity of each feature of the array was calculated using GeneChip Operating Software v1.1.1 (Affymetrix). The mean intensity was standardized to the target intensity, which was set to 1,000, to reliably compare variable multiple arrays.
| | Sample_data_processing | The values were log transformed and median centered. GeneSpring (Agilent Technologies, Inc., Santa Clara, CA, http://www.agilent.com) and Excel (Microsoft, Redmond, WA, http://www.microsoft.com) were used for gene selection.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Akira,,Imoto
| | Sample_contact_email | akiraimoto@hotmail.co.jp
| | Sample_contact_institute | Osaka Medical College
| | Sample_contact_address | Daigakumachi2-7
| | Sample_contact_city | Takatsuki
| | Sample_contact_state | Osaka
| | Sample_contact_zip/postal_code | 569-1124
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM843nnn/GSM843711/suppl/GSM843711.CEL.gz
| | Sample_series_id | GSE34189
| | Sample_data_row_count | 45101
| | |
|
GSM843712 | GPL1261 |
|
130 L1 SC rep1
|
lumbar cord of SC model
|
strain: SCID mouse
gender: male
age: 15 weeks old
tissue: lumbar cord
|
Gene expression data from lumbar cord of SC model
|
| Sample_geo_accession | GSM843712
| | Sample_status | Public on Dec 07 2011
| | Sample_submission_date | Dec 06 2011
| | Sample_last_update_date | Dec 07 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_growth_protocol_ch1 | Male severe combined immunodeficiency (SCID) mice (Clea Japan, Tokyo, 9 weeks old) were housed in a light- and temperature-controlled room and fed standard food ad libitum (irradiated CMF; Oriental Yeast, Tokyo, Japan).
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The specimens were dissolved in TRIzol reagent, were homogenized using a Multi-beads shocker (Yasui Kikai), and total RNA was extracted according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Target cRNA was generated from 100 ng total RNA from each sample using Two-Cycle Target Labeling and Control Reagents (Affymetrix).
| | Sample_hyb_protocol | The procedures for target hybridization, washing, and staining with signal amplification were conducted according to the supplier’s protocols (http://www.affymetrix.com/support/technical/manual/expression_manual.affx).
| | Sample_scan_protocol | The arrays were scanned with a GeneChip Scanner 3000 (Affymetrix).
| | Sample_data_processing | The intensity of each feature of the array was calculated using GeneChip Operating Software v1.1.1 (Affymetrix). The mean intensity was standardized to the target intensity, which was set to 1,000, to reliably compare variable multiple arrays.
| | Sample_data_processing | The values were log transformed and median centered. GeneSpring (Agilent Technologies, Inc., Santa Clara, CA, http://www.agilent.com) and Excel (Microsoft, Redmond, WA, http://www.microsoft.com) were used for gene selection.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Akira,,Imoto
| | Sample_contact_email | akiraimoto@hotmail.co.jp
| | Sample_contact_institute | Osaka Medical College
| | Sample_contact_address | Daigakumachi2-7
| | Sample_contact_city | Takatsuki
| | Sample_contact_state | Osaka
| | Sample_contact_zip/postal_code | 569-1124
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM843nnn/GSM843712/suppl/GSM843712.CEL.gz
| | Sample_series_id | GSE34189
| | Sample_data_row_count | 45101
| | |
|
GSM843713 | GPL1261 |
|
132 L1 SC rep2
|
lumbar cord of SC model
|
strain: SCID mouse
gender: male
age: 15 weeks old
tissue: lumbar cord
|
Gene expression data from lumbar cord of SC model
|
| Sample_geo_accession | GSM843713
| | Sample_status | Public on Dec 07 2011
| | Sample_submission_date | Dec 06 2011
| | Sample_last_update_date | Dec 07 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_growth_protocol_ch1 | Male severe combined immunodeficiency (SCID) mice (Clea Japan, Tokyo, 9 weeks old) were housed in a light- and temperature-controlled room and fed standard food ad libitum (irradiated CMF; Oriental Yeast, Tokyo, Japan).
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The specimens were dissolved in TRIzol reagent, were homogenized using a Multi-beads shocker (Yasui Kikai), and total RNA was extracted according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Target cRNA was generated from 100 ng total RNA from each sample using Two-Cycle Target Labeling and Control Reagents (Affymetrix).
| | Sample_hyb_protocol | The procedures for target hybridization, washing, and staining with signal amplification were conducted according to the supplier’s protocols (http://www.affymetrix.com/support/technical/manual/expression_manual.affx).
| | Sample_scan_protocol | The arrays were scanned with a GeneChip Scanner 3000 (Affymetrix).
| | Sample_data_processing | The intensity of each feature of the array was calculated using GeneChip Operating Software v1.1.1 (Affymetrix). The mean intensity was standardized to the target intensity, which was set to 1,000, to reliably compare variable multiple arrays.
| | Sample_data_processing | The values were log transformed and median centered. GeneSpring (Agilent Technologies, Inc., Santa Clara, CA, http://www.agilent.com) and Excel (Microsoft, Redmond, WA, http://www.microsoft.com) were used for gene selection.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Akira,,Imoto
| | Sample_contact_email | akiraimoto@hotmail.co.jp
| | Sample_contact_institute | Osaka Medical College
| | Sample_contact_address | Daigakumachi2-7
| | Sample_contact_city | Takatsuki
| | Sample_contact_state | Osaka
| | Sample_contact_zip/postal_code | 569-1124
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM843nnn/GSM843713/suppl/GSM843713.CEL.gz
| | Sample_series_id | GSE34189
| | Sample_data_row_count | 45101
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