Search results for the GEO ID: GSE34215  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM844759 | GPL1261 |
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Control-cultured keratinocytes from litter A
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primary keratinocytes derived from skin
|
genetic background: C57BL6/FVB
cell type: primary keratinocytes derived from skin
genotype: control
age: newborn mice
|
Biological replicate 1 of 3.
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| Sample_geo_accession | GSM844759
| | Sample_status | Public on Dec 06 2012
| | Sample_submission_date | Dec 07 2011
| | Sample_last_update_date | Dec 06 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_growth_protocol_ch1 | Primary keratinocytes were isolated from newborn mice and cultured, with all media, both for preparation and culture of primary keratinocytes containing 100 nM sodium selenite.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using Trizol (Invitrogen) following manufacturer's instructions
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | GeneChip® IVT Labeling Kit according to manufacturers instructions
| | Sample_hyb_protocol | Hybridization was done according to the manufacturer’s instructions.
| | Sample_scan_protocol | Arrays were scanned on the GeneChip Scanner 3000 (Affymetrix) and image analysis was performed using GCOS 1.3 (Affymetrix).
| | Sample_data_processing | For data processing, data files (in txt format) and cel files were imported into the microarray database (mAdb) and analyzed by software tools provided by the National Cancer Institute, Center for Cancer Research in collaboration with the National Institutes of Health, Center for Information Technology, Bioinformatics and Molecular Analysis Section. All Absent calls were excluded.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Bradley,A,Carlson
| | Sample_contact_email | carlsonb@mail.nih.gov
| | Sample_contact_phone | 301 402 6432
| | Sample_contact_institute | National Cancer Institute
| | Sample_contact_address | 9000 Rockville Pike
| | Sample_contact_city | Bethesda
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 20892
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM844nnn/GSM844759/suppl/GSM844759_Gpx4_Ctrl_A.CEL.gz
| | Sample_series_id | GSE34215
| | Sample_data_row_count | 45101
| | |
|
GSM844760 | GPL1261 |
|
Control-cultured keratinocytes from litter B
|
primary keratinocytes derived from skin
|
genetic background: C57BL6/FVB
cell type: primary keratinocytes derived from skin
genotype: control
age: newborn mice
|
Biological replicate 2 of 3.
|
| Sample_geo_accession | GSM844760
| | Sample_status | Public on Dec 06 2012
| | Sample_submission_date | Dec 07 2011
| | Sample_last_update_date | Dec 06 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_growth_protocol_ch1 | Primary keratinocytes were isolated from newborn mice and cultured, with all media, both for preparation and culture of primary keratinocytes containing 100 nM sodium selenite.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using Trizol (Invitrogen) following manufacturer's instructions
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | GeneChip® IVT Labeling Kit according to manufacturers instructions
| | Sample_hyb_protocol | Hybridization was done according to the manufacturer’s instructions.
| | Sample_scan_protocol | Arrays were scanned on the GeneChip Scanner 3000 (Affymetrix) and image analysis was performed using GCOS 1.3 (Affymetrix).
| | Sample_data_processing | For data processing, data files (in txt format) and cel files were imported into the microarray database (mAdb) and analyzed by software tools provided by the National Cancer Institute, Center for Cancer Research in collaboration with the National Institutes of Health, Center for Information Technology, Bioinformatics and Molecular Analysis Section. All Absent calls were excluded.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Bradley,A,Carlson
| | Sample_contact_email | carlsonb@mail.nih.gov
| | Sample_contact_phone | 301 402 6432
| | Sample_contact_institute | National Cancer Institute
| | Sample_contact_address | 9000 Rockville Pike
| | Sample_contact_city | Bethesda
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 20892
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM844nnn/GSM844760/suppl/GSM844760_Gpx4_Ctrl_B.CEL.gz
| | Sample_series_id | GSE34215
| | Sample_data_row_count | 45101
| | |
|
GSM844761 | GPL1261 |
|
Control-cultured keratinocytes from litter C
|
primary keratinocytes derived from skin
|
genetic background: C57BL6/FVB
cell type: primary keratinocytes derived from skin
genotype: control
age: newborn mice
|
Biological replicate 3 of 3.
|
| Sample_geo_accession | GSM844761
| | Sample_status | Public on Dec 06 2012
| | Sample_submission_date | Dec 07 2011
| | Sample_last_update_date | Dec 06 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_growth_protocol_ch1 | Primary keratinocytes were isolated from newborn mice and cultured, with all media, both for preparation and culture of primary keratinocytes containing 100 nM sodium selenite.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using Trizol (Invitrogen) following manufacturer's instructions
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | GeneChip® IVT Labeling Kit according to manufacturers instructions
| | Sample_hyb_protocol | Hybridization was done according to the manufacturer’s instructions.
| | Sample_scan_protocol | Arrays were scanned on the GeneChip Scanner 3000 (Affymetrix) and image analysis was performed using GCOS 1.3 (Affymetrix).
| | Sample_data_processing | For data processing, data files (in txt format) and cel files were imported into the microarray database (mAdb) and analyzed by software tools provided by the National Cancer Institute, Center for Cancer Research in collaboration with the National Institutes of Health, Center for Information Technology, Bioinformatics and Molecular Analysis Section. All Absent calls were excluded.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Bradley,A,Carlson
| | Sample_contact_email | carlsonb@mail.nih.gov
| | Sample_contact_phone | 301 402 6432
| | Sample_contact_institute | National Cancer Institute
| | Sample_contact_address | 9000 Rockville Pike
| | Sample_contact_city | Bethesda
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 20892
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM844nnn/GSM844761/suppl/GSM844761_Gpx4_CtrlC.CEL.gz
| | Sample_series_id | GSE34215
| | Sample_data_row_count | 45101
| | |
|
GSM844762 | GPL1261 |
|
Knockout-cultured keratinocytes from litter A
|
primary keratinocytes derived from skin
|
genetic background: C57BL6/FVB
cell type: primary keratinocytes derived from skin
genotype: Gpx4 KO
age: newborn mice
|
Biological replicate 1 of 3.
|
| Sample_geo_accession | GSM844762
| | Sample_status | Public on Dec 06 2012
| | Sample_submission_date | Dec 07 2011
| | Sample_last_update_date | Dec 06 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_growth_protocol_ch1 | Primary keratinocytes were isolated from newborn mice and cultured, with all media, both for preparation and culture of primary keratinocytes containing 100 nM sodium selenite.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using Trizol (Invitrogen) following manufacturer's instructions
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | GeneChip® IVT Labeling Kit according to manufacturers instructions
| | Sample_hyb_protocol | Hybridization was done according to the manufacturer’s instructions.
| | Sample_scan_protocol | Arrays were scanned on the GeneChip Scanner 3000 (Affymetrix) and image analysis was performed using GCOS 1.3 (Affymetrix).
| | Sample_data_processing | For data processing, data files (in txt format) and cel files were imported into the microarray database (mAdb) and analyzed by software tools provided by the National Cancer Institute, Center for Cancer Research in collaboration with the National Institutes of Health, Center for Information Technology, Bioinformatics and Molecular Analysis Section. All Absent calls were excluded.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Bradley,A,Carlson
| | Sample_contact_email | carlsonb@mail.nih.gov
| | Sample_contact_phone | 301 402 6432
| | Sample_contact_institute | National Cancer Institute
| | Sample_contact_address | 9000 Rockville Pike
| | Sample_contact_city | Bethesda
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 20892
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM844nnn/GSM844762/suppl/GSM844762_Gpx4_KO_A.CEL.gz
| | Sample_series_id | GSE34215
| | Sample_data_row_count | 45101
| | |
|
GSM844763 | GPL1261 |
|
Knockout-cultured keratinocytes from litter B
|
primary keratinocytes derived from skin
|
genetic background: C57BL6/FVB
cell type: primary keratinocytes derived from skin
genotype: Gpx4 KO
age: newborn mice
|
Biological replicate 2 of 3.
|
| Sample_geo_accession | GSM844763
| | Sample_status | Public on Dec 06 2012
| | Sample_submission_date | Dec 07 2011
| | Sample_last_update_date | Dec 06 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_growth_protocol_ch1 | Primary keratinocytes were isolated from newborn mice and cultured, with all media, both for preparation and culture of primary keratinocytes containing 100 nM sodium selenite.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using Trizol (Invitrogen) following manufacturer's instructions
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | GeneChip® IVT Labeling Kit according to manufacturers instructions
| | Sample_hyb_protocol | Hybridization was done according to the manufacturer’s instructions.
| | Sample_scan_protocol | Arrays were scanned on the GeneChip Scanner 3000 (Affymetrix) and image analysis was performed using GCOS 1.3 (Affymetrix).
| | Sample_data_processing | For data processing, data files (in txt format) and cel files were imported into the microarray database (mAdb) and analyzed by software tools provided by the National Cancer Institute, Center for Cancer Research in collaboration with the National Institutes of Health, Center for Information Technology, Bioinformatics and Molecular Analysis Section. All Absent calls were excluded.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Bradley,A,Carlson
| | Sample_contact_email | carlsonb@mail.nih.gov
| | Sample_contact_phone | 301 402 6432
| | Sample_contact_institute | National Cancer Institute
| | Sample_contact_address | 9000 Rockville Pike
| | Sample_contact_city | Bethesda
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 20892
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM844nnn/GSM844763/suppl/GSM844763_Gpx4_KO_B.CEL.gz
| | Sample_series_id | GSE34215
| | Sample_data_row_count | 45101
| | |
|
GSM844764 | GPL1261 |
|
Knockout-cultured keratinocytes from litter C
|
primary keratinocytes derived from skin
|
genetic background: C57BL6/FVB
cell type: primary keratinocytes derived from skin
genotype: Gpx4 KO
age: newborn mice
|
Biological replicate 3 of 3.
|
| Sample_geo_accession | GSM844764
| | Sample_status | Public on Dec 06 2012
| | Sample_submission_date | Dec 07 2011
| | Sample_last_update_date | Dec 06 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_growth_protocol_ch1 | Primary keratinocytes were isolated from newborn mice and cultured, with all media, both for preparation and culture of primary keratinocytes containing 100 nM sodium selenite.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using Trizol (Invitrogen) following manufacturer's instructions
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | GeneChip® IVT Labeling Kit according to manufacturers instructions
| | Sample_hyb_protocol | Hybridization was done according to the manufacturer’s instructions.
| | Sample_scan_protocol | Arrays were scanned on the GeneChip Scanner 3000 (Affymetrix) and image analysis was performed using GCOS 1.3 (Affymetrix).
| | Sample_data_processing | For data processing, data files (in txt format) and cel files were imported into the microarray database (mAdb) and analyzed by software tools provided by the National Cancer Institute, Center for Cancer Research in collaboration with the National Institutes of Health, Center for Information Technology, Bioinformatics and Molecular Analysis Section. All Absent calls were excluded.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Bradley,A,Carlson
| | Sample_contact_email | carlsonb@mail.nih.gov
| | Sample_contact_phone | 301 402 6432
| | Sample_contact_institute | National Cancer Institute
| | Sample_contact_address | 9000 Rockville Pike
| | Sample_contact_city | Bethesda
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 20892
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM844nnn/GSM844764/suppl/GSM844764_Gpx4_KO_C.CEL.gz
| | Sample_series_id | GSE34215
| | Sample_data_row_count | 45101
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