Search results for the GEO ID: GSE34217  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM844783 | GPL1261 |
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miR-17-92a over-expression rep#1
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miR-17-92a over-expression
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cell type: CD8+ T cells
|
Gene expression data of LCMV specific P14 effector CD8+ T cells with miR-17-92a over-expression
|
| Sample_geo_accession | GSM844783
| | Sample_status | Public on Jun 05 2012
| | Sample_submission_date | Dec 07 2011
| | Sample_last_update_date | Jun 05 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | P14 cells were collected from P14 transgenic mice and tranferred to C57BL6 recipients. Chimera mice were infection with 200,000 pfu LCMV Armstrong i.p.. The P14 CD8+ T cells were sorted on day 8 post-infection.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | According to manual of Qiagen Rneasy plus mini kit.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | In vitro transcription was performed with 50-250 ng of RNA input.
| | Sample_hyb_protocol | After fragmentation, 12.5 ug RNA were incubated with Mouse Genome 430 2.0 at 45C 60 RPM for 16 hrs.
| | Sample_scan_protocol | Samples were scanned using GeneChip Scanner 3000 7G with AutoLoader at Vanderbilt University Microarray core according to manufacturer's instructions
| | Sample_data_processing | Data analysis was performed using GenePattern with the robust multi-chip averaging method (RMA).
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Tuoqi,,Wu
| | Sample_contact_institute | Emory University
| | Sample_contact_address | 1510 Clifton Rd, Room G211
| | Sample_contact_city | ATLANTA
| | Sample_contact_state | GA
| | Sample_contact_zip/postal_code | 30322
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM844nnn/GSM844783/suppl/GSM844783_miR-17-92a_1.CEL.gz
| | Sample_series_id | GSE34217
| | Sample_series_id | GSE34218
| | Sample_data_row_count | 45101
| | |
|
GSM844784 | GPL1261 |
|
miR-17-92a over-expression rep#2
|
miR-17-92a over-expression
|
cell type: CD8+ T cells
|
Gene expression data of LCMV specific P14 effector CD8+ T cells with miR-17-92a over-expression
|
| Sample_geo_accession | GSM844784
| | Sample_status | Public on Jun 05 2012
| | Sample_submission_date | Dec 07 2011
| | Sample_last_update_date | Jun 05 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | P14 cells were collected from P14 transgenic mice and tranferred to C57BL6 recipients. Chimera mice were infection with 200,000 pfu LCMV Armstrong i.p.. The P14 CD8+ T cells were sorted on day 8 post-infection.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | According to manual of Qiagen Rneasy plus mini kit.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | In vitro transcription was performed with 50-250 ng of RNA input.
| | Sample_hyb_protocol | After fragmentation, 12.5 ug RNA were incubated with Mouse Genome 430 2.0 at 45C 60 RPM for 16 hrs.
| | Sample_scan_protocol | Samples were scanned using GeneChip Scanner 3000 7G with AutoLoader at Vanderbilt University Microarray core according to manufacturer's instructions
| | Sample_data_processing | Data analysis was performed using GenePattern with the robust multi-chip averaging method (RMA).
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Tuoqi,,Wu
| | Sample_contact_institute | Emory University
| | Sample_contact_address | 1510 Clifton Rd, Room G211
| | Sample_contact_city | ATLANTA
| | Sample_contact_state | GA
| | Sample_contact_zip/postal_code | 30322
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM844nnn/GSM844784/suppl/GSM844784_miR-17-92a_2.CEL.gz
| | Sample_series_id | GSE34217
| | Sample_series_id | GSE34218
| | Sample_data_row_count | 45101
| | |
|
GSM844785 | GPL1261 |
|
miR-17-92a over-expression rep#3
|
miR-17-92a over-expression
|
cell type: CD8+ T cells
|
Gene expression data of LCMV specific P14 effector CD8+ T cells with miR-17-92a over-expression
|
| Sample_geo_accession | GSM844785
| | Sample_status | Public on Jun 05 2012
| | Sample_submission_date | Dec 07 2011
| | Sample_last_update_date | Jun 05 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | P14 cells were collected from P14 transgenic mice and tranferred to C57BL6 recipients. Chimera mice were infection with 200,000 pfu LCMV Armstrong i.p.. The P14 CD8+ T cells were sorted on day 8 post-infection.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | According to manual of Qiagen Rneasy plus mini kit.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | In vitro transcription was performed with 50-250 ng of RNA input.
| | Sample_hyb_protocol | After fragmentation, 12.5 ug RNA were incubated with Mouse Genome 430 2.0 at 45C 60 RPM for 16 hrs.
| | Sample_scan_protocol | Samples were scanned using GeneChip Scanner 3000 7G with AutoLoader at Vanderbilt University Microarray core according to manufacturer's instructions
| | Sample_data_processing | Data analysis was performed using GenePattern with the robust multi-chip averaging method (RMA).
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Tuoqi,,Wu
| | Sample_contact_institute | Emory University
| | Sample_contact_address | 1510 Clifton Rd, Room G211
| | Sample_contact_city | ATLANTA
| | Sample_contact_state | GA
| | Sample_contact_zip/postal_code | 30322
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM844nnn/GSM844785/suppl/GSM844785_miR-17-92a_3.CEL.gz
| | Sample_series_id | GSE34217
| | Sample_series_id | GSE34218
| | Sample_data_row_count | 45101
| | |
|
GSM844786 | GPL1261 |
|
miR-17-92a over-expression rep#4
|
miR-17-92a over-expression
|
cell type: CD8+ T cells
|
Gene expression data of LCMV specific P14 effector CD8+ T cells with miR-17-92a over-expression
|
| Sample_geo_accession | GSM844786
| | Sample_status | Public on Jun 05 2012
| | Sample_submission_date | Dec 07 2011
| | Sample_last_update_date | Jun 05 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | P14 cells were collected from P14 transgenic mice and tranferred to C57BL6 recipients. Chimera mice were infection with 200,000 pfu LCMV Armstrong i.p.. The P14 CD8+ T cells were sorted on day 8 post-infection.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | According to manual of Qiagen Rneasy plus mini kit.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | In vitro transcription was performed with 50-250 ng of RNA input.
| | Sample_hyb_protocol | After fragmentation, 12.5 ug RNA were incubated with Mouse Genome 430 2.0 at 45C 60 RPM for 16 hrs.
| | Sample_scan_protocol | Samples were scanned using GeneChip Scanner 3000 7G with AutoLoader at Vanderbilt University Microarray core according to manufacturer's instructions
| | Sample_data_processing | Data analysis was performed using GenePattern with the robust multi-chip averaging method (RMA).
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Tuoqi,,Wu
| | Sample_contact_institute | Emory University
| | Sample_contact_address | 1510 Clifton Rd, Room G211
| | Sample_contact_city | ATLANTA
| | Sample_contact_state | GA
| | Sample_contact_zip/postal_code | 30322
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM844nnn/GSM844786/suppl/GSM844786_miR-17-92a_4.CEL.gz
| | Sample_series_id | GSE34217
| | Sample_series_id | GSE34218
| | Sample_data_row_count | 45101
| | |
|
GSM844787 | GPL1261 |
|
non-transduced rep#1
|
non-transduced
|
cell type: CD8+ T cells
|
Gene expression data of LCMV specific P14 effector CD8+ T cells without miR-17-92a over-expression
|
| Sample_geo_accession | GSM844787
| | Sample_status | Public on Jun 05 2012
| | Sample_submission_date | Dec 07 2011
| | Sample_last_update_date | Jun 05 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | P14 cells were collected from P14 transgenic mice and tranferred to C57BL6 recipients. Chimera mice were infection with 200,000 pfu LCMV Armstrong i.p.. The P14 CD8+ T cells were sorted on day 8 post-infection.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | According to manual of Qiagen Rneasy plus mini kit.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | In vitro transcription was performed with 50-250 ng of RNA input.
| | Sample_hyb_protocol | After fragmentation, 12.5 ug RNA were incubated with Mouse Genome 430 2.0 at 45C 60 RPM for 16 hrs.
| | Sample_scan_protocol | Samples were scanned using GeneChip Scanner 3000 7G with AutoLoader at Vanderbilt University Microarray core according to manufacturer's instructions
| | Sample_data_processing | Data analysis was performed using GenePattern with the robust multi-chip averaging method (RMA).
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Tuoqi,,Wu
| | Sample_contact_institute | Emory University
| | Sample_contact_address | 1510 Clifton Rd, Room G211
| | Sample_contact_city | ATLANTA
| | Sample_contact_state | GA
| | Sample_contact_zip/postal_code | 30322
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM844nnn/GSM844787/suppl/GSM844787_Control_1.CEL.gz
| | Sample_series_id | GSE34217
| | Sample_series_id | GSE34218
| | Sample_data_row_count | 45101
| | |
|
GSM844788 | GPL1261 |
|
non-transduced rep#2
|
non-transduced
|
cell type: CD8+ T cells
|
Gene expression data of LCMV specific P14 effector CD8+ T celsl without miR-17-92a over-expression
|
| Sample_geo_accession | GSM844788
| | Sample_status | Public on Jun 05 2012
| | Sample_submission_date | Dec 07 2011
| | Sample_last_update_date | Jun 05 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | P14 cells were collected from P14 transgenic mice and tranferred to C57BL6 recipients. Chimera mice were infection with 200,000 pfu LCMV Armstrong i.p.. The P14 CD8+ T cells were sorted on day 8 post-infection.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | According to manual of Qiagen Rneasy plus mini kit.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | In vitro transcription was performed with 50-250 ng of RNA input.
| | Sample_hyb_protocol | After fragmentation, 12.5 ug RNA were incubated with Mouse Genome 430 2.0 at 45C 60 RPM for 16 hrs.
| | Sample_scan_protocol | Samples were scanned using GeneChip Scanner 3000 7G with AutoLoader at Vanderbilt University Microarray core according to manufacturer's instructions
| | Sample_data_processing | Data analysis was performed using GenePattern with the robust multi-chip averaging method (RMA).
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Tuoqi,,Wu
| | Sample_contact_institute | Emory University
| | Sample_contact_address | 1510 Clifton Rd, Room G211
| | Sample_contact_city | ATLANTA
| | Sample_contact_state | GA
| | Sample_contact_zip/postal_code | 30322
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM844nnn/GSM844788/suppl/GSM844788_Control_2.CEL.gz
| | Sample_series_id | GSE34217
| | Sample_series_id | GSE34218
| | Sample_data_row_count | 45101
| | |
|
GSM844789 | GPL1261 |
|
non-transduced rep#3
|
non-transduced
|
cell type: CD8+ T cells
|
Gene expression data of LCMV specific P14 effector CD8+ T cells without miR-17-92a over-expression
|
| Sample_geo_accession | GSM844789
| | Sample_status | Public on Jun 05 2012
| | Sample_submission_date | Dec 07 2011
| | Sample_last_update_date | Jun 05 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | P14 cells were collected from P14 transgenic mice and tranferred to C57BL6 recipients. Chimera mice were infection with 200,000 pfu LCMV Armstrong i.p.. The P14 CD8+ T cells were sorted on day 8 post-infection.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | According to manual of Qiagen Rneasy plus mini kit.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | In vitro transcription was performed with 50-250 ng of RNA input.
| | Sample_hyb_protocol | After fragmentation, 12.5 ug RNA were incubated with Mouse Genome 430 2.0 at 45C 60 RPM for 16 hrs.
| | Sample_scan_protocol | Samples were scanned using GeneChip Scanner 3000 7G with AutoLoader at Vanderbilt University Microarray core according to manufacturer's instructions
| | Sample_data_processing | Data analysis was performed using GenePattern with the robust multi-chip averaging method (RMA).
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Tuoqi,,Wu
| | Sample_contact_institute | Emory University
| | Sample_contact_address | 1510 Clifton Rd, Room G211
| | Sample_contact_city | ATLANTA
| | Sample_contact_state | GA
| | Sample_contact_zip/postal_code | 30322
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM844nnn/GSM844789/suppl/GSM844789_Control_3.CEL.gz
| | Sample_series_id | GSE34217
| | Sample_series_id | GSE34218
| | Sample_data_row_count | 45101
| | |
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