Search results for the GEO ID: GSE34554  |
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GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM850941 | GPL1261 |
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DP (CD4+/8+) cells from Normal Thymus Replicate 1
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DP (CD4+/8+) cells from Normal Thymus
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genotype: WT
sample type: DP (CD4+/8+) cells from Notch1-IC over-expressing peripheral tumor (thymoma)
genetic background: WT C57/BLACK6
cell type: DP (CD4+/8+) cells
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Gene expression data from DP (CD4+/8+) cells from Normal Thymus Replicate 1
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| Sample_geo_accession | GSM850941
| | Sample_status | Public on Jan 10 2012
| | Sample_submission_date | Dec 19 2011
| | Sample_last_update_date | Jan 10 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Rneasy (QIAGEN) according to manufacturer's protocol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | 100 ng total RNA converted to cRNA using Affymetrix GeneChip® 3' IVT cDNA Synthesis and in vitro transcription kit resulting into biotin-labeled cRNA, fragmented prior to hybridization (Affymetrix Expression Analysis Technical Manual, as described).
| | Sample_hyb_protocol | 10 mcg of cDNA was hybridized for 16 hr to the Affymetrix array as described in the Expression Analysis Technical Manual. GeneChips were washed and stained in the Affymetrix Fluidics Station FS450.
| | Sample_scan_protocol | Affymetrix GeneArray scanner 7G
| | Sample_data_processing | Feature intensity was extracted by GeneChip Operating System as CEL files. The probe-level analysis of the CEL files was done by the RMA algorithm using Agilent GeneSpring GX10 program. N
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Panagiotis,,Ntziachristos
| | Sample_contact_email | panos.ntz@med.nyu.edu
| | Sample_contact_department | PATHOLOGY
| | Sample_contact_institute | NYU MEDICAL SCHOOL
| | Sample_contact_address | 550 FIRST AVENUE
| | Sample_contact_city | NEW YORK
| | Sample_contact_zip/postal_code | 10016
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM850nnn/GSM850941/suppl/GSM850941_DP_R1.CEL.gz
| | Sample_series_id | GSE34554
| | Sample_data_row_count | 45101
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GSM850942 | GPL1261 |
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DP (CD4+/8+) cells from Normal Thymus Replicate 2
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DP (CD4+/8+) cells from Normal Thymus
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genotype: WT
sample type: DP (CD4+/8+) cells from Notch1-IC over-expressing peripheral tumor (thymoma)
genetic background: WT C57/BLACK6
cell type: DP (CD4+/8+) cells
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Gene expression data from DP (CD4+/8+) cells from Normal Thymus Replicate 2
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| Sample_geo_accession | GSM850942
| | Sample_status | Public on Jan 10 2012
| | Sample_submission_date | Dec 19 2011
| | Sample_last_update_date | Jan 10 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Rneasy (QIAGEN) according to manufacturer's protocol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | 100 ng total RNA converted to cRNA using Affymetrix GeneChip® 3' IVT cDNA Synthesis and in vitro transcription kit resulting into biotin-labeled cRNA, fragmented prior to hybridization (Affymetrix Expression Analysis Technical Manual, as described).
| | Sample_hyb_protocol | 10 mcg of cDNA was hybridized for 16 hr to the Affymetrix array as described in the Expression Analysis Technical Manual. GeneChips were washed and stained in the Affymetrix Fluidics Station FS450.
| | Sample_scan_protocol | Affymetrix GeneArray scanner 7G
| | Sample_data_processing | Feature intensity was extracted by GeneChip Operating System as CEL files. The probe-level analysis of the CEL files was done by the RMA algorithm using Agilent GeneSpring GX10 program.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Panagiotis,,Ntziachristos
| | Sample_contact_email | panos.ntz@med.nyu.edu
| | Sample_contact_department | PATHOLOGY
| | Sample_contact_institute | NYU MEDICAL SCHOOL
| | Sample_contact_address | 550 FIRST AVENUE
| | Sample_contact_city | NEW YORK
| | Sample_contact_zip/postal_code | 10016
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM850nnn/GSM850942/suppl/GSM850942_DP_R2.CEL.gz
| | Sample_series_id | GSE34554
| | Sample_data_row_count | 45101
| | |
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GSM850943 | GPL1261 |
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DP (CD4+/8+) cells from Notch1-IC over-expressing peripheral tumor (thymoma) Replicate 1
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DP (CD4+/8+) cells from Notch1-IC over-expressing peripheral tumor (thymoma)
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genotype: T-ALL
sample type: DP (CD4+/8+) cells from Notch1-IC over-expressing peripheral tumor (thymoma)
genetic background: WT C57/BLACK6
cell type: DP (CD4+/8+) cells
|
Gene expression data from DP (CD4+/8+) cells from Notch1-IC over-expressing peripheral tumor (thymoma) Replicate 1
|
| Sample_geo_accession | GSM850943
| | Sample_status | Public on Jan 10 2012
| | Sample_submission_date | Dec 19 2011
| | Sample_last_update_date | Jan 10 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Rneasy (QIAGEN) according to manufacturer's protocol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | 100 ng total RNA converted to cRNA using Affymetrix GeneChip® 3' IVT cDNA Synthesis and in vitro transcription kit resulting into biotin-labeled cRNA, fragmented prior to hybridization (Affymetrix Expression Analysis Technical Manual, as described).
| | Sample_hyb_protocol | 10 mcg of cDNA was hybridized for 16 hr to the Affymetrix array as described in the Expression Analysis Technical Manual. GeneChips were washed and stained in the Affymetrix Fluidics Station FS450.
| | Sample_scan_protocol | Affymetrix GeneArray scanner 7G
| | Sample_data_processing | Feature intensity was extracted by GeneChip Operating System as CEL files. The probe-level analysis of the CEL files was done by the RMA algorithm using Agilent GeneSpring GX10 program.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Panagiotis,,Ntziachristos
| | Sample_contact_email | panos.ntz@med.nyu.edu
| | Sample_contact_department | PATHOLOGY
| | Sample_contact_institute | NYU MEDICAL SCHOOL
| | Sample_contact_address | 550 FIRST AVENUE
| | Sample_contact_city | NEW YORK
| | Sample_contact_zip/postal_code | 10016
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM850nnn/GSM850943/suppl/GSM850943_T-ALL_R1.CEL.gz
| | Sample_series_id | GSE34554
| | Sample_data_row_count | 45101
| | |
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GSM850944 | GPL1261 |
|
DP (CD4+/8+) cells from Notch1-IC over-expressing peripheral tumor (thymoma) Replicate 2
|
DP (CD4+/8+) cells from Notch1-IC over-expressing peripheral tumor (thymoma)
|
genotype: T-ALL
sample type: DP (CD4+/8+) cells from Notch1-IC over-expressing peripheral tumor (thymoma)
genetic background: WT C57/BLACK6
cell type: DP (CD4+/8+) cells
|
Gene expression data from DP (CD4+/8+) cells from Notch1-IC over-expressing peripheral tumor (thymoma) Replicate 2
|
| Sample_geo_accession | GSM850944
| | Sample_status | Public on Jan 10 2012
| | Sample_submission_date | Dec 19 2011
| | Sample_last_update_date | Jan 10 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Rneasy (QIAGEN) according to manufacturer's protocol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | 100 ng total RNA converted to cRNA using Affymetrix GeneChip® 3' IVT cDNA Synthesis and in vitro transcription kit resulting into biotin-labeled cRNA, fragmented prior to hybridization (Affymetrix Expression Analysis Technical Manual, as described).
| | Sample_hyb_protocol | 10 mcg of cDNA was hybridized for 16 hr to the Affymetrix array as described in the Expression Analysis Technical Manual. GeneChips were washed and stained in the Affymetrix Fluidics Station FS450.
| | Sample_scan_protocol | Affymetrix GeneArray scanner 7G
| | Sample_data_processing | Feature intensity was extracted by GeneChip Operating System as CEL files. The probe-level analysis of the CEL files was done by the RMA algorithm using Agilent GeneSpring GX10 program.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Panagiotis,,Ntziachristos
| | Sample_contact_email | panos.ntz@med.nyu.edu
| | Sample_contact_department | PATHOLOGY
| | Sample_contact_institute | NYU MEDICAL SCHOOL
| | Sample_contact_address | 550 FIRST AVENUE
| | Sample_contact_city | NEW YORK
| | Sample_contact_zip/postal_code | 10016
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM850nnn/GSM850944/suppl/GSM850944_T-ALL_R2.CEL.gz
| | Sample_series_id | GSE34554
| | Sample_data_row_count | 45101
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